Citrus Sinensis ID: 022127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Secondary Structure (PSIPRED)
cccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccHHHHHccccHHHHEEHHHcccHHHHHHHHHcHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHccHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mpamstltsrwfpsheraSAIGICMGGFHLGNVVGLLLTPImlstigisgPFILFSSLGLLWLstwtskvtndpcnspfvskSELRLIQagksdsvkkrnppslrhllsklpSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAawfsavpwgtmavsGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Flexible Loop (DISEMBL)
mpamstltsrwfpSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAgksdsvkkrnppslRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Low Complexity Region (SEG)
MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFsslgllwlstwtsKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered region (IsUnstruct)
**********WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS*F**************************HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST*****
Disordered Region (DISOPRED)
MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE********************RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered Region (DISEMBL)
*********RWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK********PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Disordered Region (DISPRO)
MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q7XJR2	512	Probable anion transporte	yes	no	1.0	0.589	0.760	1e-134
Q53WP9	535	Probable anion transporte	yes	no	0.996	0.562	0.665	1e-117
Q66GI9	533	Probable anion transporte	no	no	0.996	0.564	0.540	4e-94
Q8W0H5	519	Probable anion transporte	no	no	0.996	0.579	0.527	4e-93
Q9SDI4	529	Probable anion transporte	no	no	0.990	0.565	0.408	1e-61
O82390	512	Sodium-dependent phosphat	no	no	0.990	0.583	0.388	7e-60
Q652N5	591	Probable anion transporte	no	no	0.993	0.507	0.394	1e-59
Q8GX78	541	Probable anion transporte	no	no	0.983	0.548	0.386	1e-58
Q53P54	428	Probable anion transporte	no	no	0.990	0.698	0.277	4e-32
Q2QWW7	439	Probable anion transporte	no	no	0.990	0.681	0.272	4e-31

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  477 bits (1228), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/305 (76%), Positives = 271/305 (88%), Gaps = 3/305 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MP+M+TL SRWFP  ERASA+GI M GFH+GNVVGLLLTP+MLS+IGISGPFILF+SLGL
Sbjct: 208 MPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGL 267

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKS---DSVKKRNPPSLRHLLSKLPSWTVI 117
           LW+STW+S VTN+P +SPF+++SELRLIQAGK     ++  +  PSLR LLSKLP+W +I
Sbjct: 268 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAII 327

Query: 118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
            AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSA+PW TMA+SGY AG ASD LI+ 
Sbjct: 328 FANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRT 387

Query: 178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
           G+S+T VRKIMQSIGF+GPG+SLLCLN+AKSP+ AAV +TIALSLSSFSQAG+LLN+Q+I
Sbjct: 388 GHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDI 447

Query: 238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
           AP  AGFLHGI+N AGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TT+FW L++T
Sbjct: 448 APQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFAT 507

Query: 298 GERVF 302
           GERVF
Sbjct: 508 GERVF 512

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/302 (66%), Positives = 249/302 (82%), Gaps = 1/302 (0%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P MST   +WFP+HERA+A+GI MGGFHLGNV+  L TPI++S IG++G F  F+SLG L
Sbjct: 233 PTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYL 292

Query: 62  WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS-VKKRNPPSLRHLLSKLPSWTVIIAN 120
           WLS W   V +DP +S  +SKSEL+LI AG+S S ++    PSLR +LSK+  W +I+AN
Sbjct: 293 WLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVAN 352

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
           + NNWGYFVLLSWMP+YF TV+NVNLKQAAWFSA+PW  MA+SGY+AG ++D LIK+G+S
Sbjct: 353 VVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFS 412

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           + LVRKIMQSIGFIGPGVSLLCL +A++P+VAAVL+TIALSLSSFSQAGY  N+Q+IAP 
Sbjct: 413 VALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPK 472

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG LHG+ N  GT+AAI+STIGTGYFVQWLGSFQAFLT+TA LYF  T+F+N Y+TG+ 
Sbjct: 473 YAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDL 532

Query: 301 VF 302
           +F
Sbjct: 533 IF 534

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  344 bits (883), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 225/307 (73%), Gaps = 6/307 (1%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P M+ + +RWFP  ER+ A+GI M GF LGNVVGL+L+PI++S  GI GPF++F   G 
Sbjct: 221 LPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGF 280

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP------PSLRHLLSKLPSW 114
           LWL  W S  ++ P   P ++KSEL  I+  K  S  +         P    LLSK+P+W
Sbjct: 281 LWLLVWLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTW 340

Query: 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 174
            VI+AN  ++WG+FV+LSWMPIYFN+V++VNLKQAAWFSAVPW  MA +GY+AG  SD L
Sbjct: 341 AVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLL 400

Query: 175 IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI 234
           I+ G S+TL RKIMQSIGFIGPG++L+ L  AK P VA+  +++A+ L SFS  G+L+N+
Sbjct: 401 IRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINL 460

Query: 235 QEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL 294
           QEIAP+ +G LHG+  +AGTLAAI+ T+G G+FV+ LGSFQ F+ +TA LY ++ +F+N+
Sbjct: 461 QEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFYNI 520

Query: 295 YSTGERV 301
           Y+TGERV
Sbjct: 521 YATGERV 527

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  341 bits (874), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 223/307 (72%), Gaps = 6/307 (1%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P+M+ +  RWFP  ER+SA+GI M GF LGN +GLLL+PI++S  GI GPF++F   G 
Sbjct: 207 LPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGF 266

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK------SDSVKKRNPPSLRHLLSKLPSW 114
           LW+  W S ++  P  +  +S  EL  I  G+      S   + R  P    LLSK P+W
Sbjct: 267 LWVLVWISAISGTPGENAQISAHELDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTW 326

Query: 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 174
            +I AN  ++WGYFV+LSWMP+YF T+++VNL++AAWFSA+PW  MAV GY+AG  SD L
Sbjct: 327 ALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRL 386

Query: 175 IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI 234
           I+ G S+TL RKIMQ+IGF+GPGV+LL LN AKSP +A+  +TIA+ L SF  +G+L+N+
Sbjct: 387 IQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNL 446

Query: 235 QEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL 294
           QEIAP  AG LHG++N+AGT AAI+ T+G G+FV  +GSF+ FL +T+ LYF +T+FW++
Sbjct: 447 QEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDI 506

Query: 295 YSTGERV 301
           ++TGERV
Sbjct: 507 FATGERV 513

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 180/301 (59%), Gaps = 2/301 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P+++   G    F  F SLG+
Sbjct: 229 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGV 288

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
            W STW SK  + P   P +S  E +LI +  +     +  P    +LSK P W +I+++
Sbjct: 289 FWFSTWASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIP-WGLILSKPPVWALIVSH 347

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
             +NWG F+LL+WMP Y+N V   NL ++  F  +PW TMAVS    G  +D+L+  G S
Sbjct: 348 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLS 407

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           +T VRKIMQSIGF+GP   L  L++  SPA+A + +  +    +FSQ+G   N Q+I P 
Sbjct: 408 VTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPR 467

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG L G++N+AG LA +  T  TGY +Q  GS+     V+  LY V T+ WNL+STGE+
Sbjct: 468 YAGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVVLYLVGTLVWNLFSTGEK 526

Query: 301 V 301
           +
Sbjct: 527 I 527

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 179/301 (59%), Gaps = 2/301 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P ++   G    F  F SLG 
Sbjct: 212 MPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 271

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
           +WL+ W +K  + P   P +   E +LI    +     ++ P  R +LSK P W +I  +
Sbjct: 272 VWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIP-WRLILSKPPVWALISCH 330

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
             +NWG F+LL+WMP Y++ V   NL ++   S  PW TMA+S    G  +D+L+  G+S
Sbjct: 331 FCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFS 390

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           +T VRKIMQ+IGF+GP   L  L +  SP +A + +  +    +FSQ+G   N Q+IAP 
Sbjct: 391 VTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPR 450

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            +G L G++N+AG LA ++ T  TG+ +Q  GS+    T++ GLY V T+ WNL+STGE+
Sbjct: 451 YSGVLLGLSNTAGVLAGVLGTAATGHILQ-HGSWDDVFTISVGLYLVGTVIWNLFSTGEK 509

Query: 301 V 301
           +
Sbjct: 510 I 510

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P+++S  G    F  F SLG 
Sbjct: 291 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGS 350

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
           +W + W  K  + P   P +SK+E R I  G +      + P  + +LSK P W +I+++
Sbjct: 351 VWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIP-WKLILSKPPVWALIVSH 409

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
             +NWG F+LL+WMP Y+N V   NL ++     +PW TMA+   + G  +D+L+  G S
Sbjct: 410 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRGVS 469

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           +T VRKIMQSIGF+GP + L  L+  ++PA+A + +  +    +FSQ+G   N Q+I P 
Sbjct: 470 ITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR 529

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG L G++N+AG LA +  T  TGY +Q  GS+ +   V   LY V T+ WN++STGE+
Sbjct: 530 YAGVLLGLSNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVVLYIVGTVVWNVFSTGEK 588

Query: 301 VF 302
           V 
Sbjct: 589 VL 590

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 181/305 (59%), Gaps = 8/305 (2%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P++++  G    F  F SLG 
Sbjct: 241 MPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGS 300

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSL---RHLLSKLPSWTVI 117
           +W   W     + P + P +S+ E ++I  G     K R P ++   + +LSK P W +I
Sbjct: 301 IWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS----KPREPVTVIPWKLILSKPPVWALI 356

Query: 118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
           I++  +NWG F+LL+WMP Y+N V   NL ++     +PW TMAV   + G  +D+L+  
Sbjct: 357 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSR 416

Query: 178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
           G S+T VRKIMQSIGF+GP   L  L++ K+PA+A + +  +    +FSQ+G   N Q+I
Sbjct: 417 GLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDI 476

Query: 238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
            P  AG L G++N+AG LA +  T  TGY +Q  GS+     V   LY + T+ WNL++T
Sbjct: 477 GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVALYLIGTLVWNLFAT 535

Query: 298 GERVF 302
           GE++ 
Sbjct: 536 GEKIL 540

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53P54|PHT46_ORYSJ Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 168/314 (53%), Gaps = 15/314 (4%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P++ T+ ++W P  ER+ ++ +   G +LG   G+LL P ++  +G    F + + LG+ 
Sbjct: 116 PSIHTVLAQWVPPQERSRSVSLTTSGMYLGAACGMLLLPSLVKNMGPQSVFSVEAMLGVA 175

Query: 62  WLSTWTSKVTNDP--CNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIA 119
           WL  W  K  +DP   + P V+  +   +Q G   + +    P  R L S LP W +++ 
Sbjct: 176 WLLIWF-KFASDPPRTDLPKVASKDKMKVQTGGIMAPRTVKIPWARILFS-LPIWAIVVN 233

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLI-KAG 178
           N T ++  +VL++W+P YF     ++L+   +   +P+  M +   + G  +D LI +  
Sbjct: 234 NFTFHYALYVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKI 293

Query: 179 YSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA 238
            S+T  RK++ ++GF+   ++L+ L   ++P+ A    +++L   +  +AG+ +N  ++A
Sbjct: 294 LSVTKTRKLLNTVGFVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNHMDVA 353

Query: 239 PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG---LYFV-------T 288
           P  AG + GI+N+AGTLA I+    TG  ++   +    LT +     ++FV       +
Sbjct: 354 PKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFS 413

Query: 289 TIFWNLYSTGERVF 302
           +  + ++STGE++F
Sbjct: 414 SFIFLIFSTGEKIF 427

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 164/319 (51%), Gaps = 20/319 (6%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           PA+ T+ ++W P  ER+ ++ +   G +LG   G+L  P ++  +G    F + + LG+ 
Sbjct: 122 PAIHTVLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVA 181

Query: 62  WLSTWTSKVTNDPCNS-------PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSW 114
           W   W  K +++P  +       P V+  E    QAG   + +    P  R ++  LP W
Sbjct: 182 WSVIWL-KFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVKIP-WRRIIFSLPVW 239

Query: 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 174
            +++ N T ++  +VL++W+P YF     ++L+       +P+  M +   + G  +D L
Sbjct: 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHL 299

Query: 175 I-KAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLN 233
           I +   S+T  RK++ +IGF+   V+L+ L   ++P+   +  +I+L   +  +AG+ +N
Sbjct: 300 ITRRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVN 359

Query: 234 IQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT----------VTAG 283
             ++AP  AG + G++N+AGTLA I+    TG  ++   +    LT          V   
Sbjct: 360 HMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGY 419

Query: 284 LYFVTTIFWNLYSTGERVF 302
           L   ++I + ++STGE++F
Sbjct: 420 LCIFSSIIFLIFSTGEKIF 438

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
224140369	419	predicted protein [Populus trichocarpa]	1.0	0.720	0.844	1e-144
255573881	501	Sialin, putative [Ricinus communis] gi|2	1.0	0.602	0.821	1e-141
42569720	512	putative anion transporter 3 [Arabidopsi	1.0	0.589	0.760	1e-132
449439924	518	PREDICTED: probable anion transporter 3,	1.0	0.583	0.742	1e-129
356520987	504	PREDICTED: probable anion transporter 3,	0.996	0.597	0.751	1e-128
297827359	517	hypothetical protein ARALYDRAFT_482813 [	1.0	0.584	0.760	1e-127
225440612	507	PREDICTED: probable anion transporter 3,	1.0	0.595	0.745	1e-123
297740248	405	unnamed protein product [Vitis vinifera]	1.0	0.745	0.745	1e-123
115464211	535	Os05g0451100 [Oryza sativa Japonica Grou	0.996	0.562	0.665	1e-116
222631794	443	hypothetical protein OsJ_18751 [Oryza sa	0.996	0.679	0.665	1e-115

>gi|224140369|ref|XP_002323555.1| predicted protein [Populus trichocarpa] gi|222868185|gb|EEF05316.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/303 (84%), Positives = 277/303 (91%), Gaps = 1/303 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P+MSTL+SRWFP+HERASA+GI M GFHLGNV+GLLLTPIMLST+GISGPFILFSSLGL
Sbjct: 117 LPSMSTLSSRWFPTHERASAVGISMAGFHLGNVIGLLLTPIMLSTVGISGPFILFSSLGL 176

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP-PSLRHLLSKLPSWTVIIA 119
           LWL+ W + VT+DP +SPFVSKSELRLIQAGK+DS       P LR LLSK PSW +I A
Sbjct: 177 LWLTRWANGVTSDPRDSPFVSKSELRLIQAGKTDSPASDGQFPPLRLLLSKAPSWAIIFA 236

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY 179
           NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGY+AG  SDSLIKAGY
Sbjct: 237 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYVAGALSDSLIKAGY 296

Query: 180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
           SLT+VRKIMQSIGFIGPGVSLLCLNYAK+P  AA L+TIALSLSSFSQAG+LLN+Q+IAP
Sbjct: 297 SLTIVRKIMQSIGFIGPGVSLLCLNYAKTPVTAAALMTIALSLSSFSQAGFLLNMQDIAP 356

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299
             AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT IFWNLY+TGE
Sbjct: 357 QYAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTAIFWNLYATGE 416

Query: 300 RVF 302
           RVF
Sbjct: 417 RVF 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573881|ref|XP_002527859.1| Sialin, putative [Ricinus communis] gi|223532710|gb|EEF34490.1| Sialin, putative [Ricinus communis]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 275/303 (90%), Gaps = 1/303 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P+MSTL SRWFP++ERASAIG+ M GFHLGNV GLLLTPIMLSTIGI+GPFILFSSLGL
Sbjct: 199 LPSMSTLLSRWFPTNERASAIGLSMAGFHLGNVAGLLLTPIMLSTIGIAGPFILFSSLGL 258

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS-VKKRNPPSLRHLLSKLPSWTVIIA 119
           LW+S WT+ VT+DP +SPFVSKSELRLIQAGK+DS   K   P LR L SKLP+W +I A
Sbjct: 259 LWVSRWTNGVTSDPRDSPFVSKSELRLIQAGKTDSSTNKGQLPPLRLLFSKLPTWAIIFA 318

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY 179
           N+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSAVPWGTMAVSGY+AG ASD LIKAGY
Sbjct: 319 NVTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAVPWGTMAVSGYIAGAASDFLIKAGY 378

Query: 180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
           SLTLVRK+MQSIGFIGPGVSLLCLNYAK+P  AA+ IT ALSLSSFSQAG+LLN+Q+IAP
Sbjct: 379 SLTLVRKVMQSIGFIGPGVSLLCLNYAKTPVTAAIFITAALSLSSFSQAGFLLNMQDIAP 438

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299
             AGFLHGIANSAGTLAAI+STIGTGYFVQWLGSFQAFLTVTAGLYF+TTIFW +Y+TGE
Sbjct: 439 QYAGFLHGIANSAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAGLYFITTIFWIMYATGE 498

Query: 300 RVF 302
           RVF
Sbjct: 499 RVF 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569720|ref|NP_181341.2| putative anion transporter 3 [Arabidopsis thaliana] gi|187470894|sp|Q7XJR2.2|ANTR3_ARATH RecName: Full=Probable anion transporter 3, chloroplastic; AltName: Full=Phosphate transporter PHT4;2; Flags: Precursor gi|330254391|gb|AEC09485.1| putative anion transporter 3 [Arabidopsis thaliana]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/305 (76%), Positives = 271/305 (88%), Gaps = 3/305 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           MP+M+TL SRWFP  ERASA+GI M GFH+GNVVGLLLTP+MLS+IGISGPFILF+SLGL
Sbjct: 208 MPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGL 267

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKS---DSVKKRNPPSLRHLLSKLPSWTVI 117
           LW+STW+S VTN+P +SPF+++SELRLIQAGK     ++  +  PSLR LLSKLP+W +I
Sbjct: 268 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAII 327

Query: 118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
            AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSA+PW TMA+SGY AG ASD LI+ 
Sbjct: 328 FANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRT 387

Query: 178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
           G+S+T VRKIMQSIGF+GPG+SLLCLN+AKSP+ AAV +TIALSLSSFSQAG+LLN+Q+I
Sbjct: 388 GHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDI 447

Query: 238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
           AP  AGFLHGI+N AGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TT+FW L++T
Sbjct: 448 APQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFAT 507

Query: 298 GERVF 302
           GERVF
Sbjct: 508 GERVF 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439924|ref|XP_004137735.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus] gi|449483449|ref|XP_004156595.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/303 (74%), Positives = 266/303 (87%), Gaps = 1/303 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P+MSTL SRWFP HERASA+G+ M GFHLGNV+GLLLTPIMLS+IG++GPF+LFSSLGL
Sbjct: 216 LPSMSTLLSRWFPGHERASAVGMSMAGFHLGNVIGLLLTPIMLSSIGVTGPFLLFSSLGL 275

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIA 119
           +WL++W   VTN+P +S  +S SELRLI+AGK DS +       L  LLSKLP+W +I A
Sbjct: 276 VWLTSWIPGVTNNPRDSQNISTSELRLIEAGKVDSSRHNATHLPLSRLLSKLPTWAIIFA 335

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY 179
           N+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSA+PWGTMAVSGY AG  SD+LIK+GY
Sbjct: 336 NMTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAIPWGTMAVSGYFAGTMSDALIKSGY 395

Query: 180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
            +TLVRKIMQSIGFIGPG+ LLCLN+A +P VAAVL+T+ALSLSSFSQAG+LLN+Q+IAP
Sbjct: 396 PVTLVRKIMQSIGFIGPGLGLLCLNFATTPTVAAVLMTVALSLSSFSQAGFLLNMQDIAP 455

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299
             AGFLHGI+NSAGTLAAI+STIGTGYFV+WLGSFQAFLTVTA +YF+  IFWNL++TGE
Sbjct: 456 QHAGFLHGISNSAGTLAAIVSTIGTGYFVEWLGSFQAFLTVTAMVYFMAAIFWNLFATGE 515

Query: 300 RVF 302
           +VF
Sbjct: 516 QVF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520987|ref|XP_003529140.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Glycine max]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/302 (75%), Positives = 261/302 (86%), Gaps = 1/302 (0%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P+MSTL SRWFP++ERASA+G+ M GFHLGNV+GLLLTPIMLST+GISGPFILFSSLGLL
Sbjct: 203 PSMSTLLSRWFPTNERASALGMSMAGFHLGNVIGLLLTPIMLSTMGISGPFILFSSLGLL 262

Query: 62  WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP-PSLRHLLSKLPSWTVIIAN 120
           W+ TW  +VT+DP  S F+S+ E RLIQAGK+ S KK N  P +R LLSKLPSW +I AN
Sbjct: 263 WVITWAYRVTDDPTESNFISRLEQRLIQAGKTGSPKKSNKFPPIRLLLSKLPSWAIIFAN 322

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
            TNNWGYFVLLSWMP+YF +V+NVNLKQAAWFSAVPW TMA+SGY+AG ASD LI AGY 
Sbjct: 323 ATNNWGYFVLLSWMPVYFKSVYNVNLKQAAWFSAVPWATMAMSGYLAGVASDFLINAGYP 382

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
              VRK MQ+IGFIGP V+LLCLNYA +PAVAA L+TIALSLSSFSQAG++LNIQ+IAP 
Sbjct: 383 TIFVRKFMQTIGFIGPAVTLLCLNYANTPAVAATLMTIALSLSSFSQAGFMLNIQDIAPQ 442

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG LHGI+N AGT+AAIISTIGTGYFVQWLGSFQAFLT+TA LYFVTTIFWNL++T E+
Sbjct: 443 YAGILHGISNCAGTIAAIISTIGTGYFVQWLGSFQAFLTITACLYFVTTIFWNLFATSEQ 502

Query: 301 VF 302
           + 
Sbjct: 503 IL 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827359|ref|XP_002881562.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata] gi|297327401|gb|EFH57821.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/305 (76%), Positives = 272/305 (89%), Gaps = 3/305 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +P+M+TL SRWFP+ ERASA+GI M GFH+GNVVGLLLTP++LS+IGISGPFILF+SLGL
Sbjct: 213 LPSMTTLLSRWFPTDERASAVGISMAGFHMGNVVGLLLTPLLLSSIGISGPFILFASLGL 272

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK--SDSVKKRNP-PSLRHLLSKLPSWTVI 117
           LW+STW+S VTN+P +SPF+++SELRLIQAGK    S     P PSLR LLSKLP+W +I
Sbjct: 273 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTNSTKPNPSLRLLLSKLPTWAII 332

Query: 118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
           +AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSA+PW TMA+SGY AG ASD LI+ 
Sbjct: 333 LANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRT 392

Query: 178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
           G+S+T VRKIMQSIGF+GPG+SLLCLN+AKSP+ AAV +TIALSLSSFSQAG+LLN+Q+I
Sbjct: 393 GHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDI 452

Query: 238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
           AP  AGFLHGI+N AGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TT+FW L++T
Sbjct: 453 APQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWILFAT 512

Query: 298 GERVF 302
           GERVF
Sbjct: 513 GERVF 517

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440612|ref|XP_002273820.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Vitis vinifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/303 (74%), Positives = 260/303 (85%), Gaps = 1/303 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +PAMSTL SRWFP +ERASA+GI M GFHLGNV GLL+TPI++S+IGISGPF+LFSSLGL
Sbjct: 204 LPAMSTLVSRWFPINERASAVGISMAGFHLGNVTGLLVTPIVISSIGISGPFVLFSSLGL 263

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP-PSLRHLLSKLPSWTVIIA 119
           LWL+ W    T+DP  S  +S+SELRLIQAGK++S  +      LR LLSKLP+W +I A
Sbjct: 264 LWLTMWGYGATSDPRESHLISQSELRLIQAGKTESSARNGKFLPLRLLLSKLPTWAIIFA 323

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY 179
           NITNNWGYFVLLSWMP+YF +VF++NLKQAAWFSA PWG MA+SGY+AG  SD LIK GY
Sbjct: 324 NITNNWGYFVLLSWMPVYFKSVFDINLKQAAWFSAAPWGMMAISGYIAGVVSDYLIKVGY 383

Query: 180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
            LTLVRKIMQSIGFIGPGVSLLCLN+AK+P  AA+ +T  LSLSSFSQAG+LLN+Q+IAP
Sbjct: 384 PLTLVRKIMQSIGFIGPGVSLLCLNHAKTPVTAAMFLTAGLSLSSFSQAGFLLNMQDIAP 443

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299
             AGFLHGI+NSAGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TTIFWN ++TGE
Sbjct: 444 QYAGFLHGISNSAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTALLYFATTIFWNAFATGE 503

Query: 300 RVF 302
           RVF
Sbjct: 504 RVF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740248|emb|CBI30430.3| unnamed protein product [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/303 (74%), Positives = 260/303 (85%), Gaps = 1/303 (0%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
           +PAMSTL SRWFP +ERASA+GI M GFHLGNV GLL+TPI++S+IGISGPF+LFSSLGL
Sbjct: 102 LPAMSTLVSRWFPINERASAVGISMAGFHLGNVTGLLVTPIVISSIGISGPFVLFSSLGL 161

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP-PSLRHLLSKLPSWTVIIA 119
           LWL+ W    T+DP  S  +S+SELRLIQAGK++S  +      LR LLSKLP+W +I A
Sbjct: 162 LWLTMWGYGATSDPRESHLISQSELRLIQAGKTESSARNGKFLPLRLLLSKLPTWAIIFA 221

Query: 120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY 179
           NITNNWGYFVLLSWMP+YF +VF++NLKQAAWFSA PWG MA+SGY+AG  SD LIK GY
Sbjct: 222 NITNNWGYFVLLSWMPVYFKSVFDINLKQAAWFSAAPWGMMAISGYIAGVVSDYLIKVGY 281

Query: 180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
            LTLVRKIMQSIGFIGPGVSLLCLN+AK+P  AA+ +T  LSLSSFSQAG+LLN+Q+IAP
Sbjct: 282 PLTLVRKIMQSIGFIGPGVSLLCLNHAKTPVTAAMFLTAGLSLSSFSQAGFLLNMQDIAP 341

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299
             AGFLHGI+NSAGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TTIFWN ++TGE
Sbjct: 342 QYAGFLHGISNSAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTALLYFATTIFWNAFATGE 401

Query: 300 RVF 302
           RVF
Sbjct: 402 RVF 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115464211|ref|NP_001055705.1| Os05g0451100 [Oryza sativa Japonica Group] gi|75270188|sp|Q53WP9.1|PHT42_ORYSJ RecName: Full=Probable anion transporter 2, chloroplastic; AltName: Full=Phosphate transporter 4;2; Flags: Precursor gi|55733842|gb|AAV59349.1| putative anion/sugar transporter [Oryza sativa Japonica Group] gi|113579256|dbj|BAF17619.1| Os05g0451100 [Oryza sativa Japonica Group]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/302 (66%), Positives = 249/302 (82%), Gaps = 1/302 (0%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P MST   +WFP+HERA+A+GI MGGFHLGNV+  L TPI++S IG++G F  F+SLG L
Sbjct: 233 PTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYL 292

Query: 62  WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS-VKKRNPPSLRHLLSKLPSWTVIIAN 120
           WLS W   V +DP +S  +SKSEL+LI AG+S S ++    PSLR +LSK+  W +I+AN
Sbjct: 293 WLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVAN 352

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
           + NNWGYFVLLSWMP+YF TV+NVNLKQAAWFSA+PW  MA+SGY+AG ++D LIK+G+S
Sbjct: 353 VVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFS 412

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           + LVRKIMQSIGFIGPGVSLLCL +A++P+VAAVL+TIALSLSSFSQAGY  N+Q+IAP 
Sbjct: 413 VALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPK 472

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG LHG+ N  GT+AAI+STIGTGYFVQWLGSFQAFLT+TA LYF  T+F+N Y+TG+ 
Sbjct: 473 YAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDL 532

Query: 301 VF 302
           +F
Sbjct: 533 IF 534

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222631794|gb|EEE63926.1| hypothetical protein OsJ_18751 [Oryza sativa Japonica Group]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/302 (66%), Positives = 249/302 (82%), Gaps = 1/302 (0%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P MST   +WFP+HERA+A+GI MGGFHLGNV+  L TPI++S IG++G F  F+SLG L
Sbjct: 141 PTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYL 200

Query: 62  WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS-VKKRNPPSLRHLLSKLPSWTVIIAN 120
           WLS W   V +DP +S  +SKSEL+LI AG+S S ++    PSLR +LSK+  W +I+AN
Sbjct: 201 WLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVAN 260

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
           + NNWGYFVLLSWMP+YF TV+NVNLKQAAWFSA+PW  MA+SGY+AG ++D LIK+G+S
Sbjct: 261 VVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFS 320

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
           + LVRKIMQSIGFIGPGVSLLCL +A++P+VAAVL+TIALSLSSFSQAGY  N+Q+IAP 
Sbjct: 321 VALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPK 380

Query: 241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
            AG LHG+ N  GT+AAI+STIGTGYFVQWLGSFQAFLT+TA LYF  T+F+N Y+TG+ 
Sbjct: 381 YAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDL 440

Query: 301 VF 302
           +F
Sbjct: 441 IF 442

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	1.0	0.589	0.727	1.3e-118
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.990	0.583	0.368	2.1e-54
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.980	0.547	0.371	8.9e-54
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.966	0.564	0.301	7.6e-32
UNIPROTKB|Q9BYT1	436	SLC17A9 "Solute carrier family	0.622	0.431	0.338	2.6e-30
UNIPROTKB|A6QPJ4	453	SLC17A9 "SLC17A9 protein" [Bos	0.642	0.428	0.328	3.3e-30
FB|FBgn0028513	481	CG9254 [Drosophila melanogaste	0.983	0.617	0.260	4.9e-30
UNIPROTKB|E2RM55	437	SLC17A9 "Uncharacterized prote	0.642	0.443	0.328	6.8e-30
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.986	0.615	0.268	1.2e-29
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.986	0.602	0.261	1.9e-29

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 222/305 (72%), Positives = 258/305 (84%)

Query:     1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXX 60
             MP+M+TL SRWFP  ERASA+GI M GFH+GNVVGLLLTP+MLS+IGISGPFILF     
Sbjct:   208 MPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGL 267

Query:    61 XXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKS---DSVKKRNPPSLRHLLSKLPSWTVI 117
                      VTN+P +SPF+++SELRLIQAGK     ++  +  PSLR LLSKLP+W +I
Sbjct:   268 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAII 327

Query:   118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
              AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAAWFSA+PW TMA+SGY AG ASD LI+ 
Sbjct:   328 FANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRT 387

Query:   178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
             G+S+T VRKIMQSIGF+GPG+SLLCLN+AKSP+ AAV +TIALSLSSFSQAG+LLN+Q+I
Sbjct:   388 GHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDI 447

Query:   238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
             AP  AGFLHGI+N AGTLAAI+STIGTGYFVQWLGSFQAFLTVTA LYF TT+FW L++T
Sbjct:   448 APQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFAT 507

Query:   298 GERVF 302
             GERVF
Sbjct:   508 GERVF 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 111/301 (36%), Positives = 170/301 (56%)

Query:     1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXX 60
             MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P ++   G    F  F     
Sbjct:   212 MPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 271

Query:    61 XXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
                     K  + P   P +   E +LI    +     ++ P  R +LSK P W +I  +
Sbjct:   272 VWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIP-WRLILSKPPVWALISCH 330

Query:   121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
               +NWG F+LL+WMP Y++ V   NL ++   S  PW TMA+S    G  +D+L+  G+S
Sbjct:   331 FCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFS 390

Query:   181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD 240
             +T VRKIMQ+IGF+GP   L  L +  SP +A + +  +    +FSQ+G   N Q+IAP 
Sbjct:   391 VTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPR 450

Query:   241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER 300
              +G L G++N+AG LA ++ T  TG+ +Q  GS+    T++ GLY V T+ WNL+STGE+
Sbjct:   451 YSGVLLGLSNTAGVLAGVLGTAATGHILQH-GSWDDVFTISVGLYLVGTVIWNLFSTGEK 509

Query:   301 V 301
             +
Sbjct:   510 I 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 113/304 (37%), Positives = 175/304 (57%)

Query:     1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXX 60
             MPAM+ + S+W P  ER+ ++ +   G +LG+V GL  +P++++  G    F  F     
Sbjct:   241 MPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGS 300

Query:    61 XXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSL---RHLLSKLPSWTVI 117
                        + P + P +S+ E ++I  G     K R P ++   + +LSK P W +I
Sbjct:   301 IWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS----KPREPVTVIPWKLILSKPPVWALI 356

Query:   118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 177
             I++  +NWG F+LL+WMP Y+N V   NL ++     +PW TMAV   + G  +D+L+  
Sbjct:   357 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSR 416

Query:   178 GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI 237
             G S+T VRKIMQSIGF+GP   L  L++ K+PA+A + +  +    +FSQ+G   N Q+I
Sbjct:   417 GLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDI 476

Query:   238 APDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
              P  AG L G++N+AG LA +  T  TGY +Q  GS+     V   LY + T+ WNL++T
Sbjct:   477 GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVALYLIGTLVWNLFAT 535

Query:   298 GERV 301
             GE++
Sbjct:   536 GEKI 539

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 7.6e-32, P = 7.6e-32
 Identities = 93/308 (30%), Positives = 151/308 (49%)

Query:     2 PAMST-LTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXX 60
             P+ +T L +R  P  ER+ A+G   GG  LG+V+GLLL P ++ T      F LF     
Sbjct:   207 PSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGV 266

Query:    61 XXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRN-PPSLRHLLSKL----PS-W 114
                            N   VS     +  + KS++  K     SL+ +  K     P+ W
Sbjct:   267 GWFVGFQF------LNEEEVSYKGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVW 320

Query:   115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 174
              +I  +   +WG++  LSW+P YF+   ++NL +AAW S +P     V   +A + +D L
Sbjct:   321 AMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYL 380

Query:   175 IKAGYSLTLVRKIMQSIGFIGPGV--SLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL 232
             I  G   T VRKI Q+I F+ P +  +L  ++    P     ++T  L+LSSF+ +G   
Sbjct:   381 ITNGVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYC 440

Query:   233 NIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT-TIF 291
               Q+I+P+ A  L GI N+ G +  I+    TG+ +    S+   L V +  +++T T+ 
Sbjct:   441 THQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVV 500

Query:   292 WNLYSTGE 299
             W  +++ E
Sbjct:   501 WLAFASSE 508

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q9BYT1 SLC17A9 "Solute carrier family 17 member 9" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 65/192 (33%), Positives = 101/192 (52%)

Query:    92 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 151
             +S  V + N    R L  K   W  +++ ++    +F+LLSW+P +F   F  + K   W
Sbjct:   220 QSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFP-DAK--GW 276

Query:   152 -FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 210
              F+ VPW     +   +G  SD LI  GY    VRK+MQ +G     V  LCL +  S  
Sbjct:   277 IFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFC 336

Query:   211 VAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW 270
              + V  + ++ L +F+ +G  +NIQ++AP CAGFL G+AN+AG LA ++     GY ++ 
Sbjct:   337 ESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMET 396

Query:   271 LGSFQAFLTVTA 282
              GS+     + A
Sbjct:   397 TGSWTCLFNLVA 408

GO:0005215 "transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A6QPJ4 SLC17A9 "SLC17A9 protein" [Bos taurus (taxid:9913)]

 Score = 310 (114.2 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 65/198 (32%), Positives = 103/198 (52%)

Query:   105 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW-FSAVPWGTMAVS 163
             R L  K   W  II+ ++    +F+LLSW+P +F   F        W F+ VPW     +
Sbjct:   250 RQLFRKPSVWAAIISQLSAACSFFILLSWLPTFFKETFP---SSKGWVFNVVPWLVAIPA 306

Query:   164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS 223
               ++G  SD LI  GY    VRK MQ +G     V  LCL +  S   + V  + ++ L 
Sbjct:   307 SLLSGLLSDHLINQGYRTITVRKFMQVMGLGLSSVFALCLGHTSSFCNSVVFASASIGLQ 366

Query:   224 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG 283
             +F+ +G  +NIQ++AP CAGFL G+AN+AG LA ++     GY ++  GS+ +   + A 
Sbjct:   367 TFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLIETTGSWTSVFNLVAA 426

Query:   284 LYFVTTIFWNLYSTGERV 301
             +  +    + ++   +RV
Sbjct:   427 ISSLGLCTFLVFGKAQRV 444

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 79/303 (26%), Positives = 148/303 (48%)

Query:     2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXXX 61
             PA+S L + W P++ER     + +GG  +G++ G +++  +LS++     F +F      
Sbjct:   163 PALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGYVLSSMDWPWVFYVFAIIALV 222

Query:    62 XXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPS-LRHLLSKLPSWTVIIAN 120
                       + P   P++ K E R   A +     K  P +    +L+ +P W +I A 
Sbjct:   223 WFVVFTLVCFSSPFTHPYI-KPEERAFLAQEVPPPDKNKPKTPFFAILTSIPMWALISAQ 281

Query:   121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAG-Y 179
             I ++WG+++++S++P Y + V   ++K    +S++P+ TM +   ++G  +D +IK    
Sbjct:   282 IGHDWGFYIMVSYLPKYMSDVLRFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCM 341

Query:   180 SLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIA 238
             S T  RKIM  +   GP V ++  +YA  +  +   L TI + L     AG  L   +++
Sbjct:   342 STTNTRKIMTGVAAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDMS 401

Query:   239 PDCAGFLHGIANSAGTLAAIISTIGTGYFVQ--WLGSFQAFLTVTAGLYFVTTIFWNLYS 296
             P+ AG L  I N  G +  ++S    G       L  ++    V  G+  VT I + +++
Sbjct:   402 PNYAGTLMAITNGIGAITGVVSPYLVGVMTPNATLLEWRLVFWVAFGVLVVTAIVYCIWA 461

Query:   297 TGE 299
             +G+
Sbjct:   462 SGD 464

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RM55 SLC17A9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 65/198 (32%), Positives = 102/198 (51%)

Query:   105 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW-FSAVPWGTMAVS 163
             R L  K   W  I + +++   +F+LLSW+P +F   F        W F+ VPW     +
Sbjct:   234 RQLFRKPSVWAAISSQLSSACSFFILLSWLPTFFQETFP---SSKGWVFNVVPWLVAIPA 290

Query:   164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS 223
                +G  SD LI  GY    VRK MQ +G     V  LCL +  S   + V  + ++ L 
Sbjct:   291 SLFSGFLSDHLINQGYRTIAVRKFMQVMGLGLSSVFALCLGHTSSFCKSVVFASASIGLQ 350

Query:   224 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG 283
             +F+ +G  +NIQ++AP CAGFL G+AN+AG LA ++     GY ++  GS+ +   + A 
Sbjct:   351 TFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLIETTGSWTSMFNLVAA 410

Query:   284 LYFVTTIFWNLYSTGERV 301
             +  +    + L+   +RV
Sbjct:   411 ISGLGLCTFLLFGEAQRV 428

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 81/302 (26%), Positives = 142/302 (47%)

Query:     2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXXX 61
             PAM ++ S W P  ER+  + I   G  LG VV L L+ ++   +     F +F      
Sbjct:   169 PAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLICYYMNWVYVFYIFGALGVL 228

Query:    62 XXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI 121
                     V++ P     +S+ E   I +   D +  +     R +L  LP W +++A+ 
Sbjct:   229 WFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKSVPWRPILESLPLWAIVVAHF 288

Query:   122 TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLI-KAGYS 180
             + NW ++ LL+ +P Y   +   + ++  + SA+P+    +   ++G+ +D L  K  +S
Sbjct:   289 SYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCWLCIILSGQIADHLREKQNFS 348

Query:   181 LTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
                VRK    IG IGP V L+   +   +  +A   +TI+ +L  F  +GY +N  +IAP
Sbjct:   349 TVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTISTTLGGFCTSGYSINHLDIAP 408

Query:   240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQ--WLGSFQAFLTVTAGLYFVTTIFWNLYST 297
               AG L GI NS  T+  ++  +          +G +Q    + A +     IF+ L+++
Sbjct:   409 SYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEWQTVFYIAASINLFGAIFFALFAS 468

Query:   298 GE 299
             GE
Sbjct:   469 GE 470

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 79/302 (26%), Positives = 143/302 (47%)

Query:     2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFXXXXXX 61
             PAM  + S W P  ER+  + I   G  LG V+ L L+ I+   +  +  F LF      
Sbjct:   180 PAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICFYMNWTYVFYLFGIVGII 239

Query:    62 XXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI 121
                     V+  P     +S+ E   I +   + +  +       +L  LP W +++A+ 
Sbjct:   240 WFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKSVPWIPMLKSLPLWAIVVAHF 299

Query:   122 TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYS 180
             + NW ++ LL+ +P Y   +   N+++    SA+P+    +   ++G+A+D+L  K  +S
Sbjct:   300 SYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCWLCMILSGQAADNLRAKWNFS 359

Query:   181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIALSLSSFSQAGYLLNIQEIAP 239
                VR++   IG IGP V L+   +     ++A V +TI+ +L  F  +G+ +N  +IAP
Sbjct:   360 TICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTISTTLGGFCSSGFSINHLDIAP 419

Query:   240 DCAGFLHGIANSAGTLAAIISTIGTGYFV--QWLGSFQAFLTVTAGLYFVTTIFWNLYST 297
               AG L GI N+  T+  ++  +          +  +Q    + A +     IF++L++ 
Sbjct:   420 SYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQTVFYIAAAINVFGAIFFSLFAK 479

Query:   298 GE 299
             GE
Sbjct:   480 GE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJR2	ANTR3_ARATH	No assigned EC number	0.7606	1.0	0.5898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.3501.1 hypothetical protein (413 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-33
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-10
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-04
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  127 bits (322), Expect = 1e-33
 Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 12/312 (3%)

Query: 2   PAMSTLTS----RWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIGISGPFILFS 56
            ++S  T     +W P  ER+  +G+   GF LG  + L ++  +  S  G    F +F 
Sbjct: 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205

Query: 57  SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG--KSDSVKKRNPPSLRHLLSKLPSW 114
            +G  W   W     +DP   P +SK E + I +         +++ P ++ +   LP W
Sbjct: 206 IVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLP-IKAIPKSLPVW 264

Query: 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 174
            +  A   + W Y +L +++P + + V  V+ K+    S++P+    +    AG  +D L
Sbjct: 265 AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL 324

Query: 175 IKAGY-SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLI-TIALSLSSFSQAGYLL 232
             +   SLT  RKI   IG +GPG+    L Y  +     ++I T+A ++SS   AG L+
Sbjct: 325 KSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLI 384

Query: 233 NIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT--VTAGLYFVTTI 290
           N  ++AP   GF+ GI    G +  +I++   G  +         +   + A +  +  I
Sbjct: 385 NSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI 444

Query: 291 FWNLYSTGERVF 302
           F+ ++ + ER  
Sbjct: 445 FYLIFGSAERQD 456

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 10/296 (3%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL 61
           P +  + + WFP+ ERA+A+ I      LG ++G  L   +L        FI+   LG++
Sbjct: 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160

Query: 62  WLSTWTSKVTNDPCNSPFVSKSELRLI--QAGKSDSVKKRNPPSLRH----LLSKLPSWT 115
           W   W  K   DP         E + I      ++   K      ++    LL     W 
Sbjct: 161 WGVLWL-KFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWG 219

Query: 116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLI 175
           + +     N G    L+W P Y      +++ +A + +++P     +   + G+ SD L+
Sbjct: 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL 279

Query: 176 KAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ 235
           + G SL   RK    I  +   + +   NY   P  A  L+ +       + A     I 
Sbjct: 280 RRGKSLVFARK-TAIIAGLVLSLLMFATNYVNIPYAALALVALGFF-GLGAGAIGWALIS 337

Query: 236 EIAPD-CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI 290
           + AP   AG   G+ NS G L  I+  I  G      GSF   L V A L  +  +
Sbjct: 338 DNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL 393

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 19/262 (7%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
            PA + L + WFP  ER  A+G+   GF LG  +G LL  ++ S  G    F++ + L L
Sbjct: 103 FPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILAL 162

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
           L        +   P  S     +E        +  +  R+P              +++A 
Sbjct: 163 LAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLW-----------LLLAL 211

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
           +   + +F LL+++P+Y   V  ++   A     +     A+   + G+ SD L +    
Sbjct: 212 LLFGFAFFALLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGR---- 266

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP- 239
               R ++  +  I   + L  L+  +S     V + +    +          + ++AP 
Sbjct: 267 --RRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324

Query: 240 DCAGFLHGIANSAGTLAAIIST 261
           +  G   G+ N+AG+L   +  
Sbjct: 325 EERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 61/293 (20%), Positives = 111/293 (37%), Gaps = 50/293 (17%)

Query: 1   MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGL 60
            PA + L + WFP  ER  A+G+   GF LG ++G LL  ++  ++G    F++ + LGL
Sbjct: 105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN 120
           L                                             L        + +A 
Sbjct: 165 LLALLL----------------------------------------LFLLRLLLLLALAF 184

Query: 121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS 180
              ++GY+ LL+++P+Y   V  ++  +A    ++      +   + G  SD L +    
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR---- 240

Query: 181 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAV-LITIALSLSSFSQAGYLLNIQEIAP 239
               R+++  IG +   + LL L  A S A+  V L+ +   L     A   L  +   P
Sbjct: 241 ----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW 292
           +  G   G+ N+ G+L   +  +  G  +   G +     + A L  +  +  
Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 59/291 (20%), Positives = 102/291 (35%), Gaps = 32/291 (10%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGP----FILFSS 57
           P   T+T  WF   ER + +          NV G LL P++L  I         FI+   
Sbjct: 103 PCGRTVTK-WFSRSERGTWVSFWNCSH---NVGGGLLPPLVLFGIAELYSWHWVFIVPGI 158

Query: 58  LGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPS-----LRHLLSKLP 112
           + ++        + + P  S  +  +E    +    D+ KK    +     L+++L    
Sbjct: 159 IAIIVSLICFLLLRDSP-QSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKV 217

Query: 113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD 172
            W + +  +        +L W P+Y       + ++A+W   +      V   +AG  SD
Sbjct: 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD 277

Query: 173 SLIKA-GYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL 231
            L       L +    +  +  +          Y  +PA   ++  I L    F   G  
Sbjct: 278 KLFNGRRGPLAVFFMALIIVSLLV---------YWLNPAANPLMDLICLFALGFLVYGPQ 328

Query: 232 LNIQEIAPDCA-----GFLHGIANSAGTLAAIISTIGTGYFVQ---WLGSF 274
           + I  IA + A     G   G       L  I++ +  GY      W G+F
Sbjct: 329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 26/184 (14%)

Query: 114 WTVIIANITNNWGYFV---LLSWMPIYFNTVFNVNLKQAAW-FSAVPWGTMAVSGYMAGK 169
           W + +AN+   + Y V   +  W P+Y + V   +L +A W  S      +     +AG 
Sbjct: 255 WLLALANV---FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLP-GTLLAGW 310

Query: 170 ASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG 229
            SD L K        R  M  I  +    SL+   Y  +P  + +L  I L +  F   G
Sbjct: 311 LSDKLFKGR------RGPMALIFMLLITASLVL--YWLAPNGSYLLDAILLFIIGFLIYG 362

Query: 230 YLLNIQEIAPDC-----AGFLHGIANSAGTLA-AIISTIGTGYFVQ---WLGSFQAFLTV 280
             + I   A +      AG   G       L  A ++ +  GY      W G F   L++
Sbjct: 363 PQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGF-IVLSI 421

Query: 281 TAGL 284
            A L
Sbjct: 422 AALL 425

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG2532	466	consensus Permease of the major facilitator superf	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
PRK09952	438	shikimate transporter; Provisional	99.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.95
PRK10091	382	MFS transport protein AraJ; Provisional	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.94
PRK03699	394	putative transporter; Provisional	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK12307	426	putative sialic acid transporter; Provisional	99.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
PRK10504	471	putative transporter; Provisional	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
PRK12382	392	putative transporter; Provisional	99.92
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
PRK11043	401	putative transporter; Provisional	99.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.91
TIGR00901	356	2A0125 AmpG-related permease.	99.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
PRK10054	395	putative transporter; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
PRK10133	438	L-fucose transporter; Provisional	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.87
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.86
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.85
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.82
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.82
TIGR00805	633	oat sodium-independent organic anion transporter.	99.82
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.81
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.8
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.79
PF13347	428	MFS_2: MFS/sugar transport protein	99.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
PRK09669	444	putative symporter YagG; Provisional	99.77
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.76
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.74
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.73
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.72
COG2211	467	MelB Na+/melibiose symporter and related transport	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PRK09848	448	glucuronide transporter; Provisional	99.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.71
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.7
PRK11663	434	regulatory protein UhpC; Provisional	99.68
PRK10054	395	putative transporter; Provisional	99.68
PRK10429	473	melibiose:sodium symporter; Provisional	99.68
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.67
PRK11462	460	putative transporter; Provisional	99.66
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.65
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.65
KOG0254	513	consensus Predicted transporter (major facilitator	99.64
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.64
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.64
PTZ00207	591	hypothetical protein; Provisional	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.61
PRK10504	471	putative transporter; Provisional	99.61
PRK03545	390	putative arabinose transporter; Provisional	99.6
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.59
TIGR00900	365	2A0121 H+ Antiporter protein.	99.59
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.59
PRK10091	382	MFS transport protein AraJ; Provisional	99.59
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.59
KOG2563	480	consensus Permease of the major facilitator superf	99.58
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.58
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.58
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.57
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.56
PRK03699	394	putative transporter; Provisional	99.56
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.55
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.55
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.55
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.55
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
TIGR00893	399	2A0114 d-galactonate transporter.	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.54
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.54
PRK11043	401	putative transporter; Provisional	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.53
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.53
TIGR00895	398	2A0115 benzoate transport.	99.52
PRK12382	392	putative transporter; Provisional	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.52
PLN00028	476	nitrate transmembrane transporter; Provisional	99.52
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.5
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.5
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.49
PRK09874	408	drug efflux system protein MdtG; Provisional	99.49
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.49
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.48
PRK03633	381	putative MFS family transporter protein; Provision	99.48
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.48
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.47
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
PRK12307	426	putative sialic acid transporter; Provisional	99.46
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.44
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.44
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.43
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.41
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.41
KOG3626	735	consensus Organic anion transporter [Secondary met	99.41
PRK11902	402	ampG muropeptide transporter; Reviewed	99.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.38
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.36
PRK10133	438	L-fucose transporter; Provisional	99.35
PRK11010	491	ampG muropeptide transporter; Validated	99.35
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.35
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.34
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.34
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.34
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.3
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.3
TIGR00901	356	2A0125 AmpG-related permease.	99.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.29
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.27
TIGR00805	633	oat sodium-independent organic anion transporter.	99.26
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.26
PTZ00207	591	hypothetical protein; Provisional	99.25
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.25
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.21
PRK09952	438	shikimate transporter; Provisional	99.2
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.2
PRK10642	490	proline/glycine betaine transporter; Provisional	99.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.18
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.18
PRK15075	434	citrate-proton symporter; Provisional	99.17
PRK09669	444	putative symporter YagG; Provisional	99.17
TIGR00898	505	2A0119 cation transport protein.	99.16
PRK11462	460	putative transporter; Provisional	99.13
KOG2532	466	consensus Permease of the major facilitator superf	99.1
KOG2615	451	consensus Permease of the major facilitator superf	99.1
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.08
PRK10429	473	melibiose:sodium symporter; Provisional	99.07
PF13347	428	MFS_2: MFS/sugar transport protein	99.07
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.04
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.9
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.89
COG2211	467	MelB Na+/melibiose symporter and related transport	98.85
PRK09848	448	glucuronide transporter; Provisional	98.83
KOG0254	513	consensus Predicted transporter (major facilitator	98.83
KOG2533	495	consensus Permease of the major facilitator superf	98.83
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.82
KOG3810	433	consensus Micronutrient transporters (folate trans	98.8
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.79
KOG0569	485	consensus Permease of the major facilitator superf	98.75
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.74
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.69
KOG3762	618	consensus Predicted transporter [General function	98.66
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.56
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	98.55
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.47
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.46
PF12832	77	MFS_1_like: MFS_1 like family	98.44
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.37
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.37
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.33
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.28
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.27
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.22
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.19
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.04
KOG2563	480	consensus Permease of the major facilitator superf	97.92
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.86
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.85
PRK03612	521	spermidine synthase; Provisional	97.84
KOG0637	498	consensus Sucrose transporter and related proteins	97.76
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.65
KOG0637	498	consensus Sucrose transporter and related proteins	97.62
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.62
COG3202	509	ATP/ADP translocase [Energy production and convers	97.6
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.48
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.46
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.46
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.41
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.39
COG0477	338	ProP Permeases of the major facilitator superfamil	97.39
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.1
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.95
KOG3626	735	consensus Organic anion transporter [Secondary met	96.94
KOG3762	618	consensus Predicted transporter [General function	96.65
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.37
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.32
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.26
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.19
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.19
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.86
KOG3880	409	consensus Predicted small molecule transporter inv	95.65
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.85
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.66
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.9
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.73
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.51
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.9
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.88
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.09
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.04
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	89.7
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	88.58
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.5
COG0477	338	ProP Permeases of the major facilitator superfamil	88.41
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.47

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-36  Score=251.19  Aligned_cols=300  Identities=32%  Similarity=0.660  Sum_probs=272.3

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      +|+...+.++|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.+.++++..++++.+..|+|++++.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            588899999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCcccccC-CCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH
Q 022127           80 VSKSELRLIQAGKSDSVKK-RNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG  158 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  158 (302)
                      .+++|++.++++..+++.+ +.+.+++++++++.+|...+..++.++..+.+..|.|.|+++++|+|..+.|++.++..+
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            9999999999887765333 367899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      ...+..+++|.++||+.+|....+..||....++....++.++.+.+.+  +.+..+.++.+.....++..+..+....+
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~  385 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD  385 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence            9999999999999999888777777899999999999999998888876  34456677777777888888888888888


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc--ccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 022127          237 IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW--LGSFQAFLTVTAGLYFVTTIFWNLYSTGER  300 (302)
Q Consensus       237 ~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (302)
                      ..|++.+..+|+.+....+.++++|.+.|.+...  ..+|+.+|.+.+++.+++.+++.++.+.|+
T Consensus       386 ~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~  451 (466)
T KOG2532|consen  386 IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP  451 (466)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence            8999999999999999999999999999999842  236999999999999999988888765544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-34  Score=228.80  Aligned_cols=290  Identities=19%  Similarity=0.190  Sum_probs=224.9

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHH--HHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT--PIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP   78 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~   78 (302)
                      +|++...+.+|+|++|||+..++++++.++|..+.|++.  +++..+.+||..|++.++++++..++.++..+|+|++..
T Consensus       135 wpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G  214 (448)
T COG2271         135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG  214 (448)
T ss_pred             CcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            589999999999999999999999999999999999999  899889999999999999999999999999999999765


Q ss_pred             CCChHHHHHHHhcCcccccCC-----CCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHh
Q 022127           79 FVSKSELRLIQAGKSDSVKKR-----NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  153 (302)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  153 (302)
                      -.+.+|......+..+++++.     ...-.+.+++||.+|.+++...+.+...+++..|.|.|+.|..|+|..+++...
T Consensus       215 LP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~  294 (448)
T COG2271         215 LPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAI  294 (448)
T ss_pred             CCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHH
Confidence            544333221111111111111     112355678999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch--HHHHHHHHHHHHHhhhhhhhhh
Q 022127          154 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVLITIALSLSSFSQAGYL  231 (302)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  231 (302)
                      +.+..+++.|++++|+++||+-+.+      |.....+.++...+++......++.  ....+++...+++...-....-
T Consensus       295 ~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiG  368 (448)
T COG2271         295 SLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIG  368 (448)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999986432      2333345555555555555555433  4433333333333222223334


Q ss_pred             hHHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          232 LNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       232 ~~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ....|..| +..|++.|+...+.++ |.+.+....|++.|.+| |...|++..+.++++.++++...+
T Consensus       369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHHHHh
Confidence            45578888 6789999999999999 88999999999999987 999999988888888777655443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.5e-31  Score=228.70  Aligned_cols=299  Identities=25%  Similarity=0.455  Sum_probs=228.0

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      +|+..+++.||+|+++|++++++...+..+|.++++++++.+.+.. |||+.|++.++++++..++++...+|+|+++++
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~  228 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC  228 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC
Confidence            4677899999999999999999999999999999999999999884 999999999998888877777777888876665


Q ss_pred             CChHHHHHHHhcCcccc-cCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH
Q 022127           80 VSKSELRLIQAGKSDSV-KKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG  158 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  158 (302)
                      .+++|++..++..++++ +++.+.++++++++|.+|...+..++.+...+.+..|+|.|+++.+|.+..+.++..+...+
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~  308 (465)
T TIGR00894       229 ISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL  308 (465)
T ss_pred             CCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence            55555555444322221 22234568999999999999999999999999999999999999899999999999999999


Q ss_pred             HHHhhhhhhhcccchhhccCCchhH-HHHHHHHHhhhhhHHHHHHhhc-ccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTL-VRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      +..++.++.|+++||+++|+..... .++....++.....+..+.... ..+....+..+.+..++.+...+.......+
T Consensus       309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  388 (465)
T TIGR00894       309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLD  388 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhh
Confidence            9999999999999999876543221 2233333333222222222222 2333333444445444444444555566678


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccc--cchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          237 IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL--GSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       237 ~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ..|+.+|.+.|+.+..+++++.++|.+.|.+.|..  ++|...|.+.++..+++.++...+.+.+
T Consensus       389 ~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  453 (465)
T TIGR00894       389 LAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAE  453 (465)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecce
Confidence            88899999999999999999999999999988754  4588899999888888887766655444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=3.3e-29  Score=210.08  Aligned_cols=291  Identities=24%  Similarity=0.406  Sum_probs=214.2

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+|+|++++++.+...++|..+++.+++.+.+..+||+.|++.+++.++..+...+..||+|++++..+
T Consensus       101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (399)
T TIGR00893       101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT  180 (399)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCC
Confidence            56778999999999999999999999999999999999999999999999999888888777666666777665443333


Q ss_pred             hHHHHHHHhcC-----cccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           82 KSELRLIQAGK-----SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      +++++...+..     +++++++.+...++.+++|+++...+..++..........+.|.|+++.+|.++.+.+...+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (399)
T TIGR00893       181 EEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP  260 (399)
T ss_pred             HHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHH
Confidence            33322211110     1112223344677889999999999999998889999999999999988999999999999999


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      .++..++.+..|++.||+++|+..... .......+..............++.+.......+..+..+ ..+.......|
T Consensus       261 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  338 (399)
T TIGR00893       261 GIVGFIGMILGGRLSDLLLRRGKSLVF-ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISD  338 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHh
Confidence            999999999999999999988522111 1111111111112222222222233333333333333333 56677788888


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ..| ++|+++.|+.+...++|+.++|.+.|.+.|..|+++..+.+.++..+++.+..+.
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       339 NAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            887 8899999999999999999999999999998877888998888887777665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=3.6e-29  Score=211.84  Aligned_cols=295  Identities=14%  Similarity=0.108  Sum_probs=199.5

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      +|...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+.+|||+.|++.+++.++..+...+.+||+|++.+..
T Consensus       129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~  208 (434)
T PRK11663        129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLP  208 (434)
T ss_pred             chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCC
Confidence            35677899999999999999999999999999999999999999999999999988877766655555677776533211


Q ss_pred             ChHHHHHHHhcCccccc--CCCCcc-h-HHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           81 SKSELRLIQAGKSDSVK--KRNPPS-L-RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      +.++.+...++.+++++  +.+..+ . +..+++|.+|...+..++.......+..|+|.|+++.+|++..+++...+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~  288 (434)
T PRK11663        209 SVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMF  288 (434)
T ss_pred             CcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            11100000000000000  001111 1 2367789999888888877777788889999999877899999999999999


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      .+++.+++++.|+++||+.+++...   .......+............ ..+...........+++.............|
T Consensus       289 ~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  364 (434)
T PRK11663        289 ELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAE  364 (434)
T ss_pred             HHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            9999999999999999995432110   11111122222222222222 2222221111111111111111122344567


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  300 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (302)
                      ..| ++++++.|+.+...++|++++|.+.|++.|+.| |...|...+++.+++.+..+...|+++
T Consensus       365 ~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        365 CSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             cccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            776 889999999999999999999999999999987 999999998888887776665555544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.9e-29  Score=199.57  Aligned_cols=269  Identities=19%  Similarity=0.237  Sum_probs=211.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      +...++..|..||++|++++++...+..++.++|.+++.++.+.+|||+.|++.+.++++..+..+..+|  |++.++..
T Consensus       120 ~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~  197 (394)
T COG2814         120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSL  197 (394)
T ss_pred             HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCC
Confidence            4567788999999999999999999999999999999999999999999999999999998888888888  22111111


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      +.                +..+..+.+|+|+++...+..++...+.+...+|+.+++++..|+|....++....++++..
T Consensus       198 ~~----------------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~  261 (394)
T COG2814         198 PG----------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGF  261 (394)
T ss_pred             Cc----------------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHH
Confidence            01                01124678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc-ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (302)
                      +|+.++|++.|| +.|        +.+. ....+..+.+..+.+ ..+.+.......+.++..............+..||
T Consensus       262 ~Gn~~gGrl~dr-~~~--------~~l~-~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~  331 (394)
T COG2814         262 IGNLLGGRLADR-GPR--------RALI-AALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPD  331 (394)
T ss_pred             HHHHHHhhhccc-cch--------hHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence            999999999999 543        2222 232333333333333 34444444444444443333333444445556679


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      .+..+.+++....|+|..+|..++|.+.|+.| +....++.+...+++.++.+...+.+
T Consensus       332 ~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         332 AADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999976 99999999999888888776655543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=1.5e-29  Score=216.21  Aligned_cols=285  Identities=15%  Similarity=0.088  Sum_probs=200.8

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc---CCchHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTWTSKVTNDPCNS   77 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~   77 (302)
                      +|+..++++||+|++||++++|+...+.++|.++++.+..++.+..   +||..|.+.+++.++..++.+++.+|+|+++
T Consensus       140 ~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~  219 (467)
T PRK09556        140 GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL  219 (467)
T ss_pred             chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc
Confidence            3677889999999999999999999999999999999988777653   6999999988888887777777778877654


Q ss_pred             CCCChHHHHHHHhcCc-cc-ccCCCCcc-----hHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           78 PFVSKSELRLIQAGKS-DS-VKKRNPPS-----LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                      +..++++.  ..+... ++ .+++++.+     .++.+|||.+|...+..++.+...+....|+|.|+++.+|+|..+++
T Consensus       220 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~  297 (467)
T PRK09556        220 GWGKAEEI--FGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI  297 (467)
T ss_pred             CCCChhhc--ccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence            43332221  000000 00 00001111     22378999999999999988888888899999999988999999999


Q ss_pred             HHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhh
Q 022127          151 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  230 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
                      ...+...++..++.+..|+++||+++|+...       ..................++.........+.+..........
T Consensus       298 ~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  370 (467)
T PRK09556        298 NTFTLFEIGALVGSLLWGWLSDLANGRRALV-------ACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLI  370 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCchHH-------HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999874321       111111111111222222333332222222222211111222


Q ss_pred             hhHHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhc------------cccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          231 LLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQ------------WLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       231 ~~~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .....|..| +.+|++.|+.+...++ |++++|.+.|.+.|            ..| |+..|.+..++.+++.+..+.+
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            345568778 7899999999999997 77999999999999            455 9999999888888877766554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=1.8e-28  Score=202.18  Aligned_cols=264  Identities=13%  Similarity=0.041  Sum_probs=194.3

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK   82 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (302)
                      +..+.++|++|+|||++++++.+.+..+|..+++++++++.+++|||+.|++.++++++..+++++.+||+|+++++..+
T Consensus        98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~  177 (368)
T TIGR00903        98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG  177 (368)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Confidence            34566799999999999999999999999999999999999999999999999999888887788888988764321110


Q ss_pred             HHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHh
Q 022127           83 SELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAV  162 (302)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~  162 (302)
                      .+ +             ...++++++|||.+|...+..++.....+.+.+|+|.|+++ .|++.. .+.......+.+.+
T Consensus       178 ~~-~-------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~  241 (368)
T TIGR00903       178 FK-D-------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLI  241 (368)
T ss_pred             hH-H-------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHH
Confidence            00 0             01147789999999999999999999999999999999987 678864 56555555555554


Q ss_pred             hhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-ch
Q 022127          163 SGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DC  241 (302)
Q Consensus       163 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~  241 (302)
                      +   .++++||..||+.     |+..........++.........+.........+.+++.....+..+.+.+|..| +.
T Consensus       242 g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~  313 (368)
T TIGR00903       242 G---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL  313 (368)
T ss_pred             H---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh
Confidence            4   5788998876532     1221111222223333333333334333444444555555555667788899998 78


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          242 AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       242 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      |+++.|+.+..+++++..+|.+.+.+..  + ....|.+.++..+++.+...
T Consensus       314 rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       314 HGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998874  3 67778888887777776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=1.3e-28  Score=206.87  Aligned_cols=275  Identities=15%  Similarity=0.149  Sum_probs=192.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh------hcCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTWTSKVTNDPC   75 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~   75 (302)
                      |+..+++.||+|+++|++++++++.+.++|..+++.+++++.+      ..|||+.|++.++++++..++.++++||+|+
T Consensus       115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            5667889999999999999999999999999999999998874      3699999999988888877777777899887


Q ss_pred             CCCCCChHHHHHHHhcCc------c-ccc--CCC----CcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh-
Q 022127           76 NSPFVSKSELRLIQAGKS------D-SVK--KRN----PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV-  141 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~------~-~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  141 (302)
                      +.+..++++++..++..+      + .++  ++.    +..+++++ +|.+|...+..++.....+.+.+|+|.|+++. 
T Consensus       195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~  273 (412)
T TIGR02332       195 KAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFN  273 (412)
T ss_pred             cCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            655444433332211100      0 000  011    11234444 58888888888888888889999999999882 


Q ss_pred             hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q 022127          142 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALS  221 (302)
Q Consensus       142 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
                      .|.+..+++.......++..++.+..|+++||+++|+.       .. ........+.+......++.........+...
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-------HT-ALPYLFAAAGWLLASATDHNLIQLLGIIMASM  345 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-------HH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            46788888999999999999999999999999987632       11 11222222222222222222222222222222


Q ss_pred             HhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHH
Q 022127          222 LSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  285 (302)
Q Consensus       222 ~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~  285 (302)
                      +.....+.......|..| ++|+++.|+.+...++|++++|.+.|.+.|..|+|+..+.+.++..
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            121222223344455566 8899999999999999999999999999999888998888776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=7.7e-28  Score=201.36  Aligned_cols=266  Identities=16%  Similarity=0.124  Sum_probs=200.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+|||++++|+...+.++|..++|++++.+.++.|||+.|++.++++++..+..+...||+|++++   
T Consensus       116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---  192 (390)
T PRK03545        116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS---  192 (390)
T ss_pred             HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---
Confidence            56678899999999999999999999999999999999999999999999999998887766665555665443211   


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                       ++                ..+.++.+|+|.++......++.....+....+.|.|+++..|.|+.+.+...+...+++.
T Consensus       193 -~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~  255 (390)
T PRK03545        193 -GS----------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGI  255 (390)
T ss_pred             -ch----------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence             00                1135678899988877666666666666667788888888789999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHH-HhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL-CLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (302)
                      ++++..|++.||.++|.        ..  .+..+...... .....++.+.......+.+.......+.......+..|+
T Consensus       256 ~g~~~~g~l~dr~~~~~--------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  325 (390)
T PRK03545        256 IGSVLFSRLGNRHPSGF--------LL--IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD  325 (390)
T ss_pred             HHHHHHHHHhhccchhH--------HH--HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC
Confidence            99999999999997542        11  22222222222 222334444433444444444444344556666777888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      ++++++|+.+...++|..+||.+.|.+.|+.| ++..+...+.+.+++.+......++
T Consensus       326 ~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        326 ATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHccc
Confidence            89999999999999999999999999999987 9999999998888888776665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.9e-28  Score=193.23  Aligned_cols=270  Identities=17%  Similarity=0.217  Sum_probs=223.2

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGPFILFSSLGLLWLSTWTSKVTNDPCNS   77 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~   77 (302)
                      |...+..+++|+|||++|.++|+.. ..|+|..+...++..+....|   ||....+..+..++..+..++...|.|+.+
T Consensus       122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r  200 (417)
T COG2223         122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR  200 (417)
T ss_pred             ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence            3467788999999999999999999 999999999999999999999   999999988888888888888888888743


Q ss_pred             CCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHH
Q 022127           78 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  157 (302)
                      +..++.+.                ...+.+++||+.|.+.+.++....++.++..++|.|+++++|.++.+++.......
T Consensus       201 ~~~~~~~~----------------~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~  264 (417)
T COG2223         201 ASVKPQLP----------------AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP  264 (417)
T ss_pred             ccccccch----------------hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            32222110                24678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-------cchHHHHHHHHHHHHHhhhhhhhh
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-------KSPAVAAVLITIALSLSSFSQAGY  230 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
                      +.+.+.++.+|+++||+|.+|..       .  .....+.++.......       .+.......+.....+.+......
T Consensus       265 ~~g~l~Rp~GG~LsDR~Gg~rv~-------~--~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv  335 (417)
T COG2223         265 LIGALARPLGGWLSDRIGGRRVT-------L--AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV  335 (417)
T ss_pred             HHHHHHHhccchhhhhccchhHH-------H--HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh
Confidence            99999999999999999987432       1  2222223332222222       334445555556667788888888


Q ss_pred             hhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          231 LLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       231 ~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      +..+...+|++.|.+.|+...++.+|+..-|...|...|.+|++...|++...+.+++.+......
T Consensus       336 fk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         336 FKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             eeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888887655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=4.6e-27  Score=200.10  Aligned_cols=291  Identities=17%  Similarity=0.208  Sum_probs=191.2

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHH-HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNV-VGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |...+.+.|++|+++|++++++.+.+.++|.. .++..+..+....|||+.|++.+++.++..++..+++||+|++....
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP  218 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence            55667889999999999999999999999874 45554444444559999999988888877777777778877653222


Q ss_pred             ChHHHHH-HHhcCcccccCC--CCcc-hHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           81 SKSELRL-IQAGKSDSVKKR--NPPS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      ++++.+. ..++.+++++++  .+.. .+.++|+|.+|...+..++.+...+....++|.|++++.|++..+.+......
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~  298 (452)
T PRK11273        219 PIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  298 (452)
T ss_pred             ChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            2211110 000000000000  0111 13467899999988888888888888889999999998899999999888888


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHH--hhcccchHHHHHHHHHHHHHhhhhhhhhhhHH
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC--LNYAKSPAVAAVLITIALSLSSFSQAGYLLNI  234 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
                      .++..++.++.|+++||+++++..     ... .....+..+....  .....+...........+..............
T Consensus       299 ~~~~~~g~~~~G~l~dr~~~~r~~-----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  372 (452)
T PRK11273        299 EYAGIPGTLLCGWMSDKVFRGNRG-----ATG-VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHA  372 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcc-----hHH-HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            899999999999999999543211     011 1111111122211  11122332222222222221111112223345


Q ss_pred             hhhcc-chhhhHHHHHHHHHHHHHHH-HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          235 QEIAP-DCAGFLHGIANSAGTLAAII-STIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       235 ~~~~p-~~~~~~~g~~~~~~~~g~~i-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      .|..| +.+|+++|+.+...++|+.+ +|.+.|.+.|+.| |+..|.++++.++++.+....+.+.|
T Consensus       373 ~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  438 (452)
T PRK11273        373 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGE  438 (452)
T ss_pred             HHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHhccc
Confidence            67777 78999999999999998765 7999999999987 99999988888888777666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1.5e-27  Score=202.28  Aligned_cols=293  Identities=16%  Similarity=0.210  Sum_probs=197.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |.....+.|++|+++|++++++.+.+.++|..+++.+.+...+ +.+||+.|++.+++.++..+..++.+||+|++++..
T Consensus       137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  216 (438)
T TIGR00712       137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP  216 (438)
T ss_pred             HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC
Confidence            4566788999999999999999999999999999888776444 579999999999888887767677778776543211


Q ss_pred             ChHHH-H-HHHhcCcccccCC-CCcc-hHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           81 SKSEL-R-LIQAGKSDSVKKR-NPPS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        81 ~~~~~-~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      +.++. + ..++..++++++. .+.. .+.++|++.+|...+..++.+...+....+.|.|+++..|+|+.+++......
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~  296 (438)
T TIGR00712       217 PIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLY  296 (438)
T ss_pred             CchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHH
Confidence            11110 0 0000000000000 0111 22478899999988888887888888889999999998899999999999999


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHH
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNI  234 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
                      .+.++++++..|+++||+++++...      ..........+.......  ..+.+.........+..............
T Consensus       297 ~~~~~ig~~~~g~l~dr~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  370 (438)
T TIGR00712       297 EYAGIPGTLLCGWMSDKVFKGNRGA------TGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHA  370 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccH------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            9999999999999999997553221      101111111111111111  12222222211111111111111112345


Q ss_pred             hhhcc-chhhhHHHHHHHHHHHHH-HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 022127          235 QEIAP-DCAGFLHGIANSAGTLAA-IISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  301 (302)
Q Consensus       235 ~~~~p-~~~~~~~g~~~~~~~~g~-~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (302)
                      .|..| ++|+++.|+.+...++++ +++|.+.|.+.|+.| |...+.+..+..+++.+..+++.++||+
T Consensus       371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            67777 789999999999988875 689999999999887 9999999888888888888888887764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.95  E-value=1.3e-26  Score=198.02  Aligned_cols=281  Identities=16%  Similarity=0.077  Sum_probs=195.0

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh---------hcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------TIGISGPFILFSSLGLLWLSTWTSKVTNDP   74 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p   74 (302)
                      ...+++|++|+++|++++++.+...++|..+++.+.+.+..         ..|||+.|++.+++.++..++.+++.+|.|
T Consensus       144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            45578999999999999999988888888877766655432         258999999999988887766666544444


Q ss_pred             CCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhh
Q 022127           75 CNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  154 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  154 (302)
                      +++    .++.   +++.+. +++.....+++.++++++|...+..+......+....+.|.|+.+.+|+++.+++.+.+
T Consensus       224 ~~~----~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~  295 (476)
T PLN00028        224 DGN----YREL---KKSGTM-PKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAA  295 (476)
T ss_pred             CCc----hhhH---HhcCcc-ccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHH
Confidence            321    0110   000000 00111123566788999988888777766666777889999998888999999999999


Q ss_pred             HHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHH
Q 022127          155 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI  234 (302)
Q Consensus       155 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
                      ...+++.+++++.|+++||+++|+...  .|+........+.++....+...++.........+...+.+...+..+...
T Consensus       296 ~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  373 (476)
T PLN00028        296 SFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIV  373 (476)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            999999999999999999999875322  134443344444444444444444443333333444444444455566666


Q ss_pred             hhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          235 QEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       235 ~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .+..|+++|+..|+.+...++|+.++|.+.+  .+..++|+..|.+.+++.+++.++.++.+
T Consensus       374 ~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        374 PFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             cccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            7778899999999998888888888887765  22334699999999988888887776664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=3.6e-26  Score=190.51  Aligned_cols=266  Identities=15%  Similarity=0.072  Sum_probs=194.1

Q ss_pred             chhhhhhhcccCccchhhH--HHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASA--IGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      |...++..|+.|+++|++.  .+....+.++|..+++.+++.+.+.+|||+.|++.+++.++..+..++.+||+|+++++
T Consensus       106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (375)
T TIGR00899       106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG  185 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence            5566778888887777754  68888889999999999999999999999999999888777766666667776543221


Q ss_pred             CChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHH
Q 022127           80 VSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT  159 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~  159 (302)
                      .+                  .+.+.++.+++|+++......++..........+.|.|+++++|.++.+.+.........
T Consensus       186 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~  247 (375)
T TIGR00899       186 AL------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGL  247 (375)
T ss_pred             cc------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            00                  011234467778777666666555555555667889999888999999999888777777


Q ss_pred             HHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc
Q 022127          160 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP  239 (302)
Q Consensus       160 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (302)
                      ..++.+..|++.||+++|+..         ..+.....+........++.+.......+.+.+.+...+......+|..|
T Consensus       248 ~~~~~~~~g~l~~r~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  318 (375)
T TIGR00899       248 EIPFMLLAGYLIKRFGKRRLM---------LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP  318 (375)
T ss_pred             HHHHHHhHHHHHHHhcchhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            888889999999999976321         12233333333333333444444444444445555556666777788889


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ++++++.|+.+...++|..++|.+.|.+.|..| ++..+.+.+++.+++.++....
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       319 GRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence            888899999999999999999999999999876 8999998888888777665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.95  E-value=1.8e-25  Score=191.99  Aligned_cols=280  Identities=14%  Similarity=0.118  Sum_probs=178.9

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH--------hhcCCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      +|+..++++|++|+++|+++.++...+..+|..+++.+...+.        +.+|||+.|++.++++++ .++....+||
T Consensus       136 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~e  214 (490)
T PRK10642        136 YTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEE  214 (490)
T ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCC
Confidence            3677889999999999999999999999999988887765543        257999999997665554 3334455677


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcC-ccHHH-HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWT-VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                      +|+..+.     ++..++...++.+++++.++++++++ ++.+. .....++....++....|+|.|+++.+|++..+.+
T Consensus       215 sp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~  289 (490)
T PRK10642        215 TPAFQQH-----VDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV  289 (490)
T ss_pred             ChhHHHH-----HHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            6642110     00000000000011123356667653 33322 22333445667788889999999887899988888


Q ss_pred             HHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhh-hH--HHHHHhhcccchHHHHHHHHHHHHHhhhhh
Q 022127          151 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG-PG--VSLLCLNYAKSPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (302)
                      .......++..++.++.|+++||+|||+.        + ..+.+. ..  .........++.........+.++..+...
T Consensus       290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  360 (490)
T PRK10642        290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPF--------V-ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT  360 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHH--------H-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            77778888899999999999999998632        1 122211 11  111111122233333333333333334444


Q ss_pred             hhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          228 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +.......+.+| +.|+++.|..+....+++.++|.+.+++.+..+++...+....+..+++.+..++.
T Consensus       361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            555666678888 88999999877777788899999999998876656666655555555555554444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=6.7e-26  Score=190.82  Aligned_cols=270  Identities=17%  Similarity=0.126  Sum_probs=190.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+||+.|++.+++.++..+.....+||+|+..+..+
T Consensus       122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  201 (406)
T PRK11551        122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG  201 (406)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC
Confidence            55678899999999999999999999999999999999988888999999999887766666556666777654321110


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcC---ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSK---LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG  158 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  158 (302)
                      +++.              .+...++.+++   ++.+......+......+....|.|.|+++ .|.++.+.+...+...+
T Consensus       202 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~  266 (406)
T PRK11551        202 AGKQ--------------RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNI  266 (406)
T ss_pred             cchh--------------hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHH
Confidence            0000              00011222222   233444444555555666777889999988 79999999999999999


Q ss_pred             HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA  238 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (302)
                      +..++.++.|++.||+++|+.        + ..+.....++.......++.+.......+.++......+.......|..
T Consensus       267 ~~~~~~~~~g~l~dr~g~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  337 (406)
T PRK11551        267 GGALGSLLIGALMDRLRPRRV--------V-LLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY  337 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH--------H-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            999999999999999987532        1 1233333333333344444443333333333334444566677778887


Q ss_pred             c-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          239 P-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       239 p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      | ++|+++.|+.+...+++..++|.+.|.+.|+.+++...+.....+.+++.+..+..
T Consensus       338 p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        338 PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7 88999999999999999999999999999987767777777776666666555544

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=1.9e-25  Score=187.46  Aligned_cols=274  Identities=14%  Similarity=0.088  Sum_probs=187.8

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGN-VVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |...+.+.|++|+|+|++++|+.+++.++|. .+++.+++.+.+.+||+..++......++..++..+..+|.+++++..
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (402)
T TIGR00897       124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ  203 (402)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc
Confidence            3455677899999999999999999999997 689999999988889776666544433333334444444433211110


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      ++++            .++....+++++|+|+++...+..++.....+....+.|.|+++ +|+++.+.+.......+++
T Consensus       204 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~  270 (402)
T TIGR00897       204 TREK------------FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTN  270 (402)
T ss_pred             CCcc------------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHH
Confidence            0000            00111246678999999988888888888888889999999977 8999999998888889999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh--cccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN--YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA  238 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (302)
                      .++++..|+++||+++|+...     ........+....+....  ..++.+.......+.+.+.+.. .+......+..
T Consensus       271 ~ig~~~~g~l~dr~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~  344 (402)
T TIGR00897       271 IVFNVIFGIVGDKLGWMNTVR-----WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VPLAAVFPTLA  344 (402)
T ss_pred             HHHHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhC
Confidence            999999999999999764210     010111111111111111  1223333333333333333332 23345567777


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          239 PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       239 p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      |++|+++.|+.+...++++.++|.+.|.+.|..| +...+++.+++.+++.++..+.
T Consensus       345 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       345 PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999987 8888888888887777665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=1.2e-25  Score=190.47  Aligned_cols=272  Identities=15%  Similarity=0.145  Sum_probs=181.1

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH--------hhcCCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      +|...++++|++|+++|+++.++...+...|..+++.+...+.        +.+|||+.|++.++++++.. ......||
T Consensus       142 ~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e  220 (432)
T PRK10406        142 YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDE  220 (432)
T ss_pred             HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCC
Confidence            4778899999999999999999999999999888887765554        25799999998777666543 22333444


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHh-hhHHHHHHHhhhhHHHHHhhccchhhhhH
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFVLLSWMPIYFNTVFNVNLKQAAW  151 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  151 (302)
                      +|+.       |++..          ++..++++++|+|+.+...+...+ .....+....|+|.|+++.+|.+..+.+.
T Consensus       221 ~~~~-------~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~  283 (432)
T PRK10406        221 TSQQ-------ETRAL----------KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG  283 (432)
T ss_pred             CchH-------HHhhh----------cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            3321       11000          012257888999988876665554 36677888899999998888999988888


Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH--HHH-hhcccchHHHHHHHHHHHHHhhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS--LLC-LNYAKSPAVAAVLITIALSLSSFSQA  228 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ......+...++.++.|+++||++||+.        ....+.+.....  ... ....++.........+..+..+...+
T Consensus       284 ~~~i~~~~~~i~~~~~G~l~Dr~grr~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (432)
T PRK10406        284 IMTAALFVFMLIQPLIGALSDKIGRRTS--------MLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTS  355 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHH--------HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888889999999999998732        111111111111  111 11122333222222323333333344


Q ss_pred             hhhhHHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          229 GYLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       229 ~~~~~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ......+|.+| +.|+++.|+.+...++ .+...|.+.+.+ +..|++...++..++..+++.+..+++.++.
T Consensus       356 ~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~  427 (432)
T PRK10406        356 ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLHRKG  427 (432)
T ss_pred             HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            55677789998 8899999999988775 345578877754 5566677777777777777666655554443

>PRK09952 shikimate transporter; Provisional

Probab=99.95  E-value=3.1e-25  Score=187.93  Aligned_cols=277  Identities=11%  Similarity=0.060  Sum_probs=182.0

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh--------hcCCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--------TIGISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      +|+..+++.|++|+|+|++..+..+.+..+|..++..+...+.+        .+|||+.|++.+++.++. .......||
T Consensus       143 ~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~e  221 (438)
T PRK09952        143 WGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEE  221 (438)
T ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCC
Confidence            36677899999999999999999999999999999887776653        579999999877655442 222223344


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHH-HHHhhhHHHHHHHhhhhHHHHHhhccchhhhhH
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVII-ANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  151 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  151 (302)
                      +|+..     ++++   +. +++  +++....+.++++|+.+.... ..++.....+....|.|.|+++.+|.+......
T Consensus       222 s~~~~-----~~~~---~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~  290 (438)
T PRK09952        222 SAEFE-----QQQH---EQ-AAA--KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN  290 (438)
T ss_pred             ChhHH-----HHHh---hc-ccc--cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            43210     0000   00 000  001112334667777766544 455556677778899999998888988876655


Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHH--h-hccc-chHHHHHHHHHHHHHhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC--L-NYAK-SPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~  227 (302)
                      .....+....++.++.|+++||++||+..       .  .+.++..+....  . .... +.........+..+..+...
T Consensus       291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  361 (438)
T PRK09952        291 IGLLVGGLSCLTIPCFAWLADRFGRRRVY-------I--TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV  361 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHH-------H--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence            55566777888889999999999987422       1  222222221111  1 1122 22222333344444555556


Q ss_pred             hhhhhHHhhhcc-chhhhHHHHHHHHHH-HHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          228 AGYLLNIQEIAP-DCAGFLHGIANSAGT-LAAIISTIGTGYFVQWL-GSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~~~~~g~~~~~~~-~g~~i~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +..++...|..| +.|+++.|+.+.... +++.++|.+.+++.|.. ++|...+...+++.+++.+..+..+++
T Consensus       362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            667788899888 889999999766654 89999999999998854 458888888888888877776655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.95  E-value=7e-25  Score=183.29  Aligned_cols=259  Identities=15%  Similarity=0.136  Sum_probs=184.8

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+|+|++++++...+.++|..++|++++.+.+.+|||+.|++.++++++..+......||+|++++   
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~---  203 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS---  203 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc---
Confidence            56778899999999999999999999999999999999999999999999999887776655444444555432110   


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      +                 ...+.++.+|+|.++...+..++.....+....+.+.++.+++|+++.+.+......+++..
T Consensus       204 ~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~i  266 (394)
T PRK10213        204 H-----------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASF  266 (394)
T ss_pred             c-----------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            0                 01134578899999887776666666666666676444444589999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccch
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDC  241 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (302)
                      ++.++.+++.||.++         +.+.....+.....+.+....++.+.......+.+.+.+...+...+..++..|++
T Consensus       267 ig~~~~~~l~~r~~~---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  337 (394)
T PRK10213        267 VGTSLSSFILKRSVK---------LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ  337 (394)
T ss_pred             HHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc
Confidence            999999999998532         21112222222222333233344444444445555555666666666777777877


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q 022127          242 AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  290 (302)
Q Consensus       242 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  290 (302)
                      +++..+......++|..+||.+.|.+.|..| +...+...+.+.++..+
T Consensus       338 ~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        338 AEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHH
Confidence            7788888888889999999999999999886 77777776655544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.95  E-value=6.9e-25  Score=182.97  Aligned_cols=267  Identities=15%  Similarity=0.129  Sum_probs=181.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|++++++...+..+|..+++++++.+.+..|||+.|++.+++.++..+..++.+||.+++++   
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~---  186 (382)
T PRK10091        110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK---  186 (382)
T ss_pred             HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc---
Confidence            34466789999999999999999999999999999999999999999999999988877766655565666542211   


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      .+.+                 +..+.+|+++.|......++.....+....+.+.++++.+|.++.+.+...+...++..
T Consensus       187 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  249 (382)
T PRK10091        187 GGLR-----------------EQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMV  249 (382)
T ss_pred             cCHH-----------------HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            0000                 11245677777776666555555555666777888887789999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc-ccchHHHHHHHHHHHHHhhhhhhhhh-hHHhhhcc
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYL-LNIQEIAP  239 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p  239 (302)
                      +++++.|++.||+++|+..         ..+..+..++.+.... .++.+.......+...+.....++.. ....+..|
T Consensus       250 ig~~~~g~l~~r~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  320 (382)
T PRK10091        250 LGNLLSGRLSGRYSPLRIA---------AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKG  320 (382)
T ss_pred             HHhHHHheeccccCchhHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc
Confidence            9999999999999876432         1333333333332222 23333222322222222222222222 23334333


Q ss_pred             -chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          240 -DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       240 -~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                       +.++.+  ..+...++|.++||.+.|.+.|..++|+..+.+.++...+.......+.++|
T Consensus       321 ~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (382)
T PRK10091        321 GELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYK  379 (382)
T ss_pred             chHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhh
Confidence             445544  3467788999999999999999866799999988777776665554444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=5.5e-25  Score=184.21  Aligned_cols=264  Identities=13%  Similarity=0.050  Sum_probs=183.8

Q ss_pred             chhhhhhhcccCccch--hhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      |...+++.|+.++++|  +...++.+.+.++|.+++|++++.+.+++|||..|+..++..++..+..+..+||++++++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (393)
T PRK15011        124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPL  203 (393)
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc
Confidence            4566777888776655  34568889999999999999999999999999999999888887777766667776543221


Q ss_pred             CChHHHHHHHhcCcccccCCCCcchHHhhcC-ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH
Q 022127           80 VSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG  158 (302)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  158 (302)
                      .+ ++       . +        ..   .++ +..+......+...........+.|.|+++.+|.++.+.+.+.+...+
T Consensus       204 ~~-~~-------~-~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~  263 (393)
T PRK15011        204 AT-GT-------L-E--------AP---RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAG  263 (393)
T ss_pred             cc-cc-------c-c--------cc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            10 00       0 0        00   112 223333333344444555566789999988899999999988887778


Q ss_pred             HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA  238 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (302)
                      ..+++.++.|+++||+++|+.        + ..+..............++.+.......+.....+...+......+|..
T Consensus       264 ~~i~~~~~~G~l~dr~g~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~  334 (393)
T PRK15011        264 LEIPTMLIAGYFAKRLGKRFL--------M-RVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM  334 (393)
T ss_pred             HHHHHHHHHHHHHHHhChHHH--------H-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            888899999999999997632        1 1222222222222223344444344444444444444455556678888


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          239 PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       239 p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      |++++++.++.+...++|..++|.+.|.+.|+.| |+..+.+.+++.+++.+..+..
T Consensus       335 p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        335 PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhh
Confidence            9889999999999999999999999999999876 9989988888877777665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=6.1e-25  Score=185.51  Aligned_cols=268  Identities=15%  Similarity=0.073  Sum_probs=188.7

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+++|+++.++.....++|..+||.+++.+.+..+||+.|++.++..++..++. ..+|++++++++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~  207 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPALPPPPQPRE  207 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcccc
Confidence            45677889999999999999999999999999999999999998999999998777666544443 44565543221111


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      + +.+.            ....++..+++|.++...+..++.. .......++|.|.++.+|.++.+.+++.+...++..
T Consensus       208 ~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~  273 (417)
T PRK10489        208 H-PLRS------------LLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAA  273 (417)
T ss_pred             c-chHH------------HHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHH
Confidence            0 0000            1123566778888766655554433 345667889999999889999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++.++.+++.||.++++        .+ ..+..+..+....+...++.+.......+.+.+.+...+...+..++..| +
T Consensus       274 ig~~~~~~l~~~~~~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  344 (417)
T PRK10489        274 LGALTSGWLAHSARPGL--------LM-LLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE  344 (417)
T ss_pred             HHHHHHHHhhhccCcch--------HH-HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence            99999999999854432        11 23333444444444445554444444444444445445555677788877 7


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +||+++|+.+...++|..++|.+.|.+.|..| +...+...+++.++..++...
T Consensus       345 ~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        345 MLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999887 666666555554444443333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=1e-25  Score=191.64  Aligned_cols=283  Identities=14%  Similarity=0.076  Sum_probs=195.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      +...+++.++++ ++|++++++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..++..++.+.++...+
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  205 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS  205 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            445677889996 7899999999999999999999999999999999999999998877655544443332221110000


Q ss_pred             h-HHHHHHHhcCcc---c--ccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhH
Q 022127           82 K-SELRLIQAGKSD---S--VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  155 (302)
Q Consensus        82 ~-~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  155 (302)
                      + ++........++   +  .++..+....+++++|+++......++.....+....++|.|.++ .|+++.+++...+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~  284 (455)
T TIGR00892       206 KSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSI  284 (455)
T ss_pred             cccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence            0 000000000000   0  000001111357899999988888887777777788899999987 79999999999999


Q ss_pred             HHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHh
Q 022127          156 PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ  235 (302)
Q Consensus       156 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
                      .+++.+++++..|++.||.+.++.     ++.....+....++..+.....++.+.......+.+...+...+...+...
T Consensus       285 ~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~  359 (455)
T TIGR00892       285 IGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLM  359 (455)
T ss_pred             HHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            999999999999999997432210     222222333333333333344455554444444555555556666677777


Q ss_pred             hhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022127          236 EIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       236 ~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  291 (302)
                      |..| ++++++.|+++...++|++++|.+.|.+.|..|+|+..|++.+++.+++.+.
T Consensus       360 ~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       360 DLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            7776 7899999999999999999999999999998877988888888777666553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.95  E-value=2.8e-26  Score=191.27  Aligned_cols=270  Identities=17%  Similarity=0.170  Sum_probs=186.6

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHH-HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL-LLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      +|...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+||+.|++.+++.++..++.++..||+|++++.
T Consensus       101 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (379)
T TIGR00881       101 WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGL  180 (379)
T ss_pred             CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccccc
Confidence            367788999999999999999999999999999999 5777777788999999998888877777777667776654322


Q ss_pred             CChHHHH--HHHhcCc--ccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhH
Q 022127           80 VSKSELR--LIQAGKS--DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  155 (302)
Q Consensus        80 ~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  155 (302)
                      .++++.+  +.+++.+  +++.+..+...++++++|.++...+..++..........+.|.|+++.+|.++.+.+...+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (379)
T TIGR00881       181 PPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTL  260 (379)
T ss_pred             CccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            1111100  0000000  00111122345678899999999888888888888899999999998899999999999999


Q ss_pred             HHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhH
Q 022127          156 PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLN  233 (302)
Q Consensus       156 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
                      ..++..++.++.|++.||..+++..      ...................  ..+...........+.......+.....
T Consensus       261 ~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  334 (379)
T TIGR00881       261 YELGGLVGTLLAGWLSDKLFNGRRG------PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVI  334 (379)
T ss_pred             HHHHcchhHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999999999999987544321      1111111111222222222  1222222222222222222223344556


Q ss_pred             Hhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHH
Q 022127          234 IQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  277 (302)
Q Consensus       234 ~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  277 (302)
                      ..|..| ++|+++.|+.+...++++.++|.+.|.+.|+.| |+..
T Consensus       335 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~  378 (379)
T TIGR00881       335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGA  378 (379)
T ss_pred             HHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cccc
Confidence            677777 889999999999999999999999999999876 6643

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=1.4e-24  Score=186.01  Aligned_cols=272  Identities=11%  Similarity=0.164  Sum_probs=194.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      ++..+++.|++|+|||+++.++...+..+|.++++.+++++.+ ..|||..|++.+++.++..+..++ .||++++.+. 
T Consensus       126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-  203 (491)
T PRK11010        126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPV-  203 (491)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc-
Confidence            3456888999999999999999999999999999999999988 579999999988877766544443 6664432111 


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhh-HHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA-VPWGT  159 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~  159 (302)
                      ++++++            +...++++.+++++.|...+..++..........+.+.|+.+..|+|+.+.+.... ...++
T Consensus       204 ~~~~~~------------~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~  271 (491)
T PRK11010        204 PKTLEQ------------AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLA  271 (491)
T ss_pred             ccchhh------------hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            000000            01124677888888887776666666666666778888887778999999999874 55679


Q ss_pred             HHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh--hhHHHHHHhhcc-cchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          160 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI--GPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       160 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      .+++.+++|+++||+++|+        .+...+..  +........... ++.........+..+..+...+...+...+
T Consensus       272 ~iiG~ll~G~L~dr~g~~~--------~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~  343 (491)
T PRK11010        272 TIVGALYGGILMQRLSLFR--------ALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMT  343 (491)
T ss_pred             HHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999753        22112211  111111222222 233222323333333445555666777788


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ..+ +..++..|+.+...++|..+++.+.|.+.|..| |+..|.+.+++.+.+.+.....+
T Consensus       344 l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        344 LCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            777 778999999999999999999999999999887 99999999988888877766554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=6.7e-25  Score=182.11  Aligned_cols=252  Identities=14%  Similarity=0.084  Sum_probs=185.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..|||+.|++.++..++..+..+...+++++++++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (365)
T TIGR00900       111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQA  190 (365)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccc
Confidence            56778999999999999999999999999999999999999999999999998777665544443332222221111111


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHH-hhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      .++ +..+         +.....++++|+|.++......+.......... .+.|.|.++.+|.++.+.+.......++.
T Consensus       191 ~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (365)
T TIGR00900       191 LSN-AVLR---------DTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGA  260 (365)
T ss_pred             cch-hHHH---------HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            010 0000         011246778899999888887777777776666 88899998878999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccc-hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-PAVAAVLITIALSLSSFSQAGYLLNIQEIAP  239 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (302)
                      .++.+..+++.||.++|+.         ...+....++........++ .+.......+.+.+.+...+.......|..|
T Consensus       261 ~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  331 (365)
T TIGR00900       261 LLGALLLGLLGRYFKRMAL---------MTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVP  331 (365)
T ss_pred             HHHHHHHHHHHHHhchhHH---------HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999986521         12334444444444444442 4444455555556666666777788888877


Q ss_pred             -chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          240 -DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       240 -~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                       ++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       332 ~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       332 AELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             889999999999999999999999999988653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.94  E-value=5e-25  Score=183.62  Aligned_cols=263  Identities=15%  Similarity=0.152  Sum_probs=189.7

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      +.....+.|++| |+|++++++...+.++|..+++++.+.+.+..|||+.|++.+++.++..+..++..+|+|+++++.+
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (377)
T TIGR00890       110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN  188 (377)
T ss_pred             HhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC
Confidence            345567788887 5799999999999999998888788888888899999999998888877776666655443211100


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ++             .++++.+.++.+|+|+++......++..........+.+.|.++ +|.+..+.+...+...++..
T Consensus       189 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  254 (377)
T TIGR00890       189 IE-------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNG  254 (377)
T ss_pred             cc-------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence            00             00111245678899999888777777666666666777777766 78888889999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch--HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVLITIALSLSSFSQAGYLLNIQEIAP  239 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (302)
                      ++++..|++.||++||+..         ..+.....++.......++.  ........+.+...+...+.......|..|
T Consensus       255 ~~~~~~g~l~dr~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~  325 (377)
T TIGR00890       255 GGRPFLGALSDKIGRQKTM---------SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFG  325 (377)
T ss_pred             HHHHHHHHHHHHHhhhhhh---------hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhh
Confidence            9999999999999876432         23334444444433333321  222222333334444444555667788777


Q ss_pred             -chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          240 -DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       240 -~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                       ++|+++.|+.+...++|..++|.+.|.+.|+.| |+..|.+.+++.+++.
T Consensus       326 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       326 PANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence             889999999999999999999999999999887 9999988887776654

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=8.9e-25  Score=183.04  Aligned_cols=267  Identities=15%  Similarity=0.109  Sum_probs=187.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |...+++.|++|+++|+++++..+....+|..++|.+.+.+.+ ..|||+.|.+.+++.++..++.++  ++.|+.+++.
T Consensus       114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~  191 (394)
T PRK03699        114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHA  191 (394)
T ss_pred             cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccC
Confidence            4567888999999999999999999999999999999888764 579999999988877665544332  2333211110


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      ++       +    + ++.    .++ ..++.++...+..++.....+.+..|.|.|+++.+|+|+.+.+...+...++.
T Consensus       192 ~~-------~----~-~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~  254 (394)
T PRK03699        192 PK-------A----D-KPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAY  254 (394)
T ss_pred             cc-------c----c-Ccc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHH
Confidence            00       0    0 000    011 12466777777777777777888899999998889999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD  240 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (302)
                      .+++++.|+++||+++|+..         .....+..+....+...++...........+++.+...+...+...+..|+
T Consensus       255 ~ig~~~~g~l~dr~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  325 (394)
T PRK03699        255 MVGMWIFSFIVRFFDLQRIL---------TVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV  325 (394)
T ss_pred             HHHHHHHHHHHHHhchhhHH---------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999876432         122223333333333344443333333334444444455555666677776


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ++++..|......++|..++|.+.|++.|..| ++..++..+++.+++.+..+...+
T Consensus       326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHHH
Confidence            67888899999999999999999999999887 888888877777777655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=2.5e-24  Score=180.09  Aligned_cols=265  Identities=13%  Similarity=0.109  Sum_probs=187.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      +...+++.|++| ++|+++++.+..+...|..+++.+++++.++. +||+.+.+.++..++.....+...+++|++++  
T Consensus       116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  192 (393)
T PRK09705        116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSH--  192 (393)
T ss_pred             hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--
Confidence            456678899997 78999999999999999999999999998875 89999877666554433333222222222110  


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                        ++                +...++.+++|+.|...+..++....++....|.|.|+++ +|.+..+++...+...++.
T Consensus       193 --~~----------------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~  253 (393)
T PRK09705        193 --KT----------------TTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQ  253 (393)
T ss_pred             --CC----------------CcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHH
Confidence              00                0012345677888887777777777888889999999988 7999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh-cccchHHHHHHHHHHHHHhhhhhhhhhhHHhhh-c
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN-YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI-A  238 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (302)
                      +++++..+++.||.++|+..         ..+..+..++...+. ..++... . ...+.+.+.+...+.......+. .
T Consensus       254 i~g~~~~g~l~~r~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~-~-~~~l~g~g~g~~~~~~~~~~~~~~~  322 (393)
T PRK09705        254 AAGALLMPAMARHQDRRKLL---------MLALVLQLVGFCGFIWLPLQLPV-L-WAMVCGLGLGGAFPLCLLLALDHSV  322 (393)
T ss_pred             HHHHHHHHHHHhhccchHHH---------HHHHHHHHHHHHHHHHccchHHH-H-HHHHHHHhccchHHHHHHHHHhhcC
Confidence            99999999999999876321         123333333333222 2222221 1 12223333344444444444444 3


Q ss_pred             c-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          239 P-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       239 p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      | +++++..|+.+...++++.++|.+.|++.|+.|++...|.+.+++.+++.+....+.+++
T Consensus       323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4 678999999999999999999999999999998899999988888887777666665554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.93  E-value=1.4e-23  Score=175.54  Aligned_cols=245  Identities=16%  Similarity=0.102  Sum_probs=176.7

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.+++.++..+..++..||+++++++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (385)
T TIGR00710       112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ  191 (385)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC
Confidence            45678899999999999999999999999999999999999999999999999888877766666665666544322111


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      +++               ...+.++.+|+|+++...+.........+....+.|.++++.+|.++.+.+...+...++..
T Consensus       192 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  256 (385)
T TIGR00710       192 IST---------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMI  256 (385)
T ss_pred             HHH---------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            110               01245678899999888877777777777888889999988899999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc---cc--chHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---AK--SPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      ++.++.|++.||+++|+..       .  .+.....++...+..   ..  ..........+.+.+.+...+.......|
T Consensus       257 ~~~~~~g~l~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  327 (385)
T TIGR00710       257 FGGFLNGRFIKKWGAKSLL-------R--MGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALE  327 (385)
T ss_pred             HHHHHHHHHHHhcCHHHHH-------H--HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999876321       1  222222222222111   11  12222223333444455555666666677


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          237 IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       237 ~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      ..|++++++.++.+.....++.+.+.+.+.+.+.
T Consensus       328 ~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       328 DFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             cCcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7788899999999999887777777677755443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.93  E-value=2.3e-23  Score=175.34  Aligned_cols=251  Identities=9%  Similarity=0.008  Sum_probs=180.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+.+.|++|+++|.+.+++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||+++++++..
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL  199 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc
Confidence            45667889999999999999999999999999999999999999999999999888887766655555666543221110


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      +  .+.            ...+++++++||+++...+..++..........+.|.|+++.+|.++.+.+.......++..
T Consensus       200 ~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~  265 (406)
T PRK15402        200 S--LKE------------LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALI  265 (406)
T ss_pred             c--HHH------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            0  000            11246788999999888877777666666677778999888899999999988877788889


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc-----ccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-----AKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      ++.++.+++.||+++|+.        + ..+.+...++......     ..+.+.......+.+.+.+...+........
T Consensus       266 ~g~~~~g~l~~r~~~~~~--------~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~  336 (406)
T PRK15402        266 AGNLTLARLTSRRPLRSL--------I-RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF  336 (406)
T ss_pred             HHHHHHHHHHHhcCHHHH--------H-HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence            999999999999987532        1 2333333333222221     1223333333444444444444555454555


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Q 022127          237 IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  275 (302)
Q Consensus       237 ~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~  275 (302)
                      ..|+++|+..+..+....++..+|+.+.+.+.+..+.+.
T Consensus       337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        337 SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            556889999999999999999999999999998877444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.93  E-value=2.6e-23  Score=173.45  Aligned_cols=274  Identities=12%  Similarity=0.058  Sum_probs=181.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.+.+.++..+...+..||+++++++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQP  177 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCC
Confidence            45678899999999999999999999999999999999999999999999999888887766666666666543321111


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      .+.++             ...+.++.+++|+++...+..++.....+....+.|.++.+.+|.++.+.+.......++..
T Consensus       178 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~  244 (377)
T PRK11102        178 FHLRT-------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLF  244 (377)
T ss_pred             CChHH-------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            10000             11245678889988887777777777777777888888888889999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhh---hHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhh
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG---PGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEI  237 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
                      ++.+..|++.||+++|+..         ..+...   ..+........+ +.+.......+.....+...........|.
T Consensus       245 ~~~~~~g~l~~r~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (377)
T PRK11102        245 VMTIINSRFVRRVGALNML---------RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDE  315 (377)
T ss_pred             HHHHHHHHHHHHhCHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence            9999999999999976321         122211   122222222222 222222222222233333334444556777


Q ss_pred             ccchhhhHHHHHHHHHH-HHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 022127          238 APDCAGFLHGIANSAGT-LAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  300 (302)
Q Consensus       238 ~p~~~~~~~g~~~~~~~-~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (302)
                      .|++++++.++.+.... ++..+++.+.+. .+.  ++...+...+++.+++.+..++..++++
T Consensus       316 ~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (377)
T PRK11102        316 FPHMAGTASSLAGTLRFGIGAIVGALLSLA-PFT--SAWPMVWSMAFCSILSILFYLYASRPKK  376 (377)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHhc-cCC--ChHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            78889999999877654 556666665443 222  2333444444444555555555555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.93  E-value=1.6e-23  Score=174.73  Aligned_cols=261  Identities=10%  Similarity=0.009  Sum_probs=196.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...++..|+  ++||++..|......++|.+++|++++.+.+++|||..|++.+... +..+.... .+|+++++++.+
T Consensus       113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~  188 (382)
T TIGR00902       113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL-AFMLIGFL-IKPTIPPKDAIP  188 (382)
T ss_pred             hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH-HHHHHHHH-cCCCCCCCcccc
Confidence            4555666554  4778999999999999999999999999999999999998876543 22223333 333322111100


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ++             +++...+.++++|||+++...+..++..........+.|.|+++ .|.++.+.|.......++.+
T Consensus       189 ~~-------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i  254 (382)
T TIGR00902       189 ED-------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEI  254 (382)
T ss_pred             cc-------------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHH
Confidence            00             00112246789999999999998888888888899999999988 89999999999998889999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccch
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDC  241 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (302)
                      ++.+..+++.||+++|        + .+..+.+...+........++.+.......+-+...+...+....++++..+++
T Consensus       255 ~~~~~~~~l~~r~g~~--------~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~  325 (382)
T TIGR00902       255 IIFAFSNKLFQNCSAR--------D-LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSE  325 (382)
T ss_pred             HHHHHhHHHHhhCCHH--------H-HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh
Confidence            9999999999999864        2 224666666766666676777776666677777777777777777788773378


Q ss_pred             hhhHHHHHHH-HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022127          242 AGFLHGIANS-AGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       242 ~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  291 (302)
                      +++..++++. ...+|..++|.+.|++.|+.| + ..|...+++.+++.++
T Consensus       326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            8999999874 567899999999999999986 4 6677777777665433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=4.4e-24  Score=183.62  Aligned_cols=259  Identities=15%  Similarity=0.057  Sum_probs=188.0

Q ss_pred             chhhhhhhccc-CccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |.....+.+++ |+++|++++|+......+|..+||.+++.+.++.|||+.|++...+.++..++..+.+||+++++++.
T Consensus       113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~  192 (495)
T PRK14995        113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP  192 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666665 67899999999999999999999999999999999999999988888877777777777765433221


Q ss_pred             ChHHHH------------HHHhcCc------------------------ccccCCCCcchHHhhcCccHHHHHHHHHhhh
Q 022127           81 SKSELR------------LIQAGKS------------------------DSVKKRNPPSLRHLLSKLPSWTVIIANITNN  124 (302)
Q Consensus        81 ~~~~~~------------~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (302)
                      .+....            ..++..+                        .|.+.+.+.-..+++|+|.+....+..++..
T Consensus       193 ~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~  272 (495)
T PRK14995        193 LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAM  272 (495)
T ss_pred             CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHH
Confidence            111100            0000000                        0111122223357899999988888888888


Q ss_pred             HHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh
Q 022127          125 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  204 (302)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (302)
                      ...+....+.|.|+++.+|+|+.++|.......++..+++++.|++.||+++|+.         ...+..+..++...+.
T Consensus       273 ~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~---------~~~g~~~~~~~~~~l~  343 (495)
T PRK14995        273 ITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV---------ATGGMALSALSFYGLA  343 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH---------HHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999999999999997532         1234444443333322


Q ss_pred             c---ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          205 Y---AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       205 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .   .++.+.......+.+.+.+...+.......+..| ++++.+.++.++.+++|+.+|+.+.|.+.+
T Consensus       344 ~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        344 MTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   2233333444555556666666666666666666 889999999999999999999999998864

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.93  E-value=7.1e-24  Score=176.52  Aligned_cols=263  Identities=16%  Similarity=0.127  Sum_probs=186.4

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH-----h-------------hcCCchHHHHHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-----S-------------TIGISGPFILFSSLGLLW   62 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----~-------------~~gwr~~f~~~~~~~~~~   62 (302)
                      |++.++.+++|+|++|||+++|+.....++|..+++.+...+.     +             ..+||...++..++.++.
T Consensus       145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~  224 (462)
T PRK15034        145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIA  224 (462)
T ss_pred             HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999998777788877766665433     2             233677777777777776


Q ss_pred             HHHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 022127           63 LSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF  142 (302)
Q Consensus        63 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (302)
                      .++.++..+|.|+++.  +                   ..+.++.+|+|+.|.+.+.+++.+..+.++..++|.|.++.+
T Consensus       225 ~i~~~~~~~~~~~~~~--~-------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~  283 (462)
T PRK15034        225 TIAAWSGMNDIASSRA--S-------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF  283 (462)
T ss_pred             HHHHHHhCCCcccccc--C-------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6666665544332110  1                   113567899999999999999999999999999999998855


Q ss_pred             ccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHH----HHhhcc--cchHHHHHHH
Q 022127          143 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSL----LCLNYA--KSPAVAAVLI  216 (302)
Q Consensus       143 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~  216 (302)
                        +............+...+.++++|+++||+|+++..       .  .+.+...+..    ......  .+.+.....+
T Consensus       284 --~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl-------~--~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~  352 (462)
T PRK15034        284 --PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT-------L--INFIFMAIFSALLFLTLPGTGSGNFIAFYAVF  352 (462)
T ss_pred             --ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH-------H--HHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence              333333334445678888999999999999986432       1  2222111111    111111  1233344444


Q ss_pred             HHHHHHhhhhhhhhhhHHhhhccc----------------------hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q 022127          217 TIALSLSSFSQAGYLLNIQEIAPD----------------------CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSF  274 (302)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~----------------------~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~  274 (302)
                      .......+......+.++.+.+|+                      +.|.+.|+....+.+|+++-|.+.|...+.+|++
T Consensus       353 ~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~  432 (462)
T PRK15034        353 MGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP  432 (462)
T ss_pred             HHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc
Confidence            444456677777777777666653                      6788999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 022127          275 QAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ...|+...+..+++.++.+..
T Consensus       433 ~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        433 VGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888887765443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=1.1e-23  Score=177.61  Aligned_cols=269  Identities=13%  Similarity=0.112  Sum_probs=187.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||++++.++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (408)
T PRK09874        125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE  204 (408)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence            45567888999999999999999999999999999999999999999999999888877766666666666543211110


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHH-HHHHhhhHHHHHHHhhhhHHHHHhhccchh---hhhHHhhHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVI-IANITNNWGYFVLLSWMPIYFNTVFNVNLK---QAAWFSAVPW  157 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~  157 (302)
                      +.+   .             .+..+.+++|+++... ...+...........++|.|.++..+....   ..+.+.....
T Consensus       205 ~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  268 (408)
T PRK09874        205 MLH---M-------------REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPG  268 (408)
T ss_pred             hhH---H-------------HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            000   0             0123456777765433 333333444455667788888874432221   2345556667


Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhh
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEI  237 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
                      ++..++.+..|++.||+++|+..         ..+.....+........++.+.......+.+.+.+...+.......+.
T Consensus       269 l~~~~~~~~~g~l~dr~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        269 VAALLSAPRLGKLGDRIGPEKIL---------ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHhccccchhH---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            88888899999999999976432         133333333333334444444444444445555566666666666776


Q ss_pred             cc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          238 AP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       238 ~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .| +++|+.++..+...++|..++|.+.|.+.|..| |+..|.+.+++.+++.+......
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            66 789999999999999999999999999999886 99999999988888777665433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=4.4e-24  Score=179.00  Aligned_cols=262  Identities=15%  Similarity=0.141  Sum_probs=182.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH--------hhcCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILFSSLGLLWLSTWTSKVTND   73 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~   73 (302)
                      |+..+++.|++|+++|++..++.+.+..+|..+++.++..+.        +.++||+.|.+.+++.++.. ......||+
T Consensus       115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~  193 (394)
T TIGR00883       115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEET  193 (394)
T ss_pred             cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence            566788999999999999999999999999999998877664        35799999998766555433 222334443


Q ss_pred             CCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCcc--HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhH
Q 022127           74 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP--SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  151 (302)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  151 (302)
                      |+.++     +++         ++++.+.+.++.+++++  ++......++.....+....+.|.|+++.+|.++.+.+.
T Consensus       194 ~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  259 (394)
T TIGR00883       194 PVFEK-----AQE---------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALL  259 (394)
T ss_pred             hhHHH-----HHh---------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence            32110     000         01112335677777766  777777777777777788899999998878999999999


Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH--HH-HhhcccchHHHHHHHHHHHHHhhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS--LL-CLNYAKSPAVAAVLITIALSLSSFSQA  228 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      ......+...++.++.|++.||+++|+.        ....+.......  .. .....++.+.......+.+...+...+
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  331 (394)
T TIGR00883       260 VLMLSLILFFITIPLSGALSDRIGRRPV--------LIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTG  331 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHH--------HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999997632        111222221111  11 111123334434444445555556677


Q ss_pred             hhhhHHhhhcc-chhhhHHHHH-HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Q 022127          229 GYLLNIQEIAP-DCAGFLHGIA-NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  286 (302)
Q Consensus       229 ~~~~~~~~~~p-~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  286 (302)
                      .......|..| ++|+++.|+. +....+|..++|.+.|.+.|+.|.++..++......+
T Consensus       332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            77888889888 7899999985 4455678889999999999988767666665555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=5.7e-25  Score=181.69  Aligned_cols=245  Identities=24%  Similarity=0.343  Sum_probs=179.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+|+|++++++.+...++|..+++.+++.+.+..+||+.|++.+++.++..++.....+++|++++..+
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  183 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES  183 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc
Confidence            56788999999999999999999999999999999999999989999999999999888877654455555554433322


Q ss_pred             hHHHH-HHHhcCcccccCCCCc-chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccc-hhhhhHHhhHHHH
Q 022127           82 KSELR-LIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN-LKQAAWFSAVPWG  158 (302)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~  158 (302)
                      +++++ ..+         ++.. .+++++++|.+|......+...........+.|.|+++.+|.+ ..+.+...+...+
T Consensus       184 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  254 (352)
T PF07690_consen  184 PKESESKKP---------KPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGI  254 (352)
T ss_dssp             STTTT--HH---------HCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHH
T ss_pred             ccccccccc---------cccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHH
Confidence            22210 000         1111 3677888888886666666666677788999999988889999 8899999999999


Q ss_pred             HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA  238 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (302)
                      ...++.++.|++.||+++++      +.........+....+......++.........+.+.+.+...+.......+..
T Consensus       255 ~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  328 (352)
T PF07690_consen  255 VGIIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999998752      122222222222222222222333444444455555567777888888889988


Q ss_pred             c-chhhhHHHHHHHHHHHHHHHHH
Q 022127          239 P-DCAGFLHGIANSAGTLAAIIST  261 (302)
Q Consensus       239 p-~~~~~~~g~~~~~~~~g~~i~~  261 (302)
                      | +++|++.|+.+...++++.++|
T Consensus       329 ~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7 8999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=1.4e-23  Score=175.81  Aligned_cols=268  Identities=13%  Similarity=0.089  Sum_probs=181.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+|+|++++++.....++|..+||.+++.+. .+|||+.|++.++..++..++..+..||.+++ +.  
T Consensus       118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~--  193 (400)
T PRK11646        118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TV--  193 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-cc--
Confidence            566788999999999999999999999999999999999998 77999999998877776655544545542211 00  


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ++               +.+.++++.+++|+++...+..+...........+.|.|+++..+ ++.+.+...+...+...
T Consensus       194 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~  257 (400)
T PRK11646        194 RT---------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSL  257 (400)
T ss_pred             ch---------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHH
Confidence            00               011246778899988766655554444444456788999988544 77788888777776666


Q ss_pred             hhhhhhhcccch-hhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-
Q 022127          162 VSGYMAGKASDS-LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-  239 (302)
Q Consensus       162 ~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  239 (302)
                      .+....+++.|| .+.+        +.+ ..+..+..++...+...++.+.......+...+.+...+...+...+..| 
T Consensus       258 ~~~~~~~~~~~~r~~~~--------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~  328 (400)
T PRK11646        258 TLLYPIARWSEKRFRLE--------HRL-MAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADA  328 (400)
T ss_pred             HHHHHHHHHHHHhcchh--------HHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc
Confidence            555555555554 4322        211 24444444455444445554443333334444455556666777888777 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS---FQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +++|++.|+.+...++|..+||.+.|.+.|+.++   ....+...+.+.+++.+......|+
T Consensus       329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (400)
T PRK11646        329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQ  390 (400)
T ss_pred             ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999998542   3456666666666665554443333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=8.1e-25  Score=183.64  Aligned_cols=273  Identities=17%  Similarity=0.090  Sum_probs=192.0

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh------hcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTWTSKVTNDP   74 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p   74 (302)
                      ||+...+++.|+.++||++.++++.+..++|.++|.+++..+.+      ..||||.|.+.|++.++..++.++++|++|
T Consensus       152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            68999999999999999999999999999999999999988643      469999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhcCc----cc-ccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhh
Q 022127           75 CNSPFVSKSELRLIQAGKS----DS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  149 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  149 (302)
                      ++.+..+++|++...++.+    .+ .++.++..+++.+++|++|...+..++.....+++.+|+|.|+++..|+|..++
T Consensus       232 ~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a  311 (495)
T KOG2533|consen  232 SKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA  311 (495)
T ss_pred             hhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh
Confidence            9887777777543322222    11 122455678899999999999999999999999999999999999667999999


Q ss_pred             hHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhh
Q 022127          150 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      ..+..+..++++++.+++|.++||+..-    ...|........+...++...+...............+........+.
T Consensus       312 ~~ls~~~~~~g~v~~i~ag~lsdr~~~~----~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (495)
T KOG2533|consen  312 NLLSTPYDVGGIVGLILAGYLSDRLKTI----FARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAII  387 (495)
T ss_pred             ccccchHHhhhHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHH
Confidence            9999999999999999999999996400    001222222333333444333333332332222222222333333344


Q ss_pred             hhhHHhhhc-c-chhhhHHHHHHHHHHHHHHHHHHHhhh-hhccccchhHHH
Q 022127          230 YLLNIQEIA-P-DCAGFLHGIANSAGTLAAIISTIGTGY-FVQWLGSFQAFL  278 (302)
Q Consensus       230 ~~~~~~~~~-p-~~~~~~~g~~~~~~~~g~~i~~~i~g~-l~~~~g~~~~~~  278 (302)
                      .....++.. + .++-+..+......+.++.++|.+.-. .....+ +...|
T Consensus       388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~-~~~~f  438 (495)
T KOG2533|consen  388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG-WGAVF  438 (495)
T ss_pred             HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh-hhhHH
Confidence            444444433 3 334455555555666666666555433 333333 55555

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=7.2e-24  Score=178.44  Aligned_cols=270  Identities=13%  Similarity=0.094  Sum_probs=172.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF   79 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~   79 (302)
                      |...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+  ||+.|.+.++..++. ++.....||+++.++.
T Consensus       119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~  197 (405)
T TIGR00891       119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEK  197 (405)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHH
Confidence            5667889999999999999999999999999999999999988776  999998865544443 3344445665432111


Q ss_pred             CChHH--HHHHHhcCcccc-cCC----CCcchHHhhcCc--cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           80 VSKSE--LRLIQAGKSDSV-KKR----NPPSLRHLLSKL--PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        80 ~~~~~--~~~~~~~~~~~~-~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                      .++++  ++..++..++++ .+.    .....++..+++  .+...................++|.|+++.+|++..+.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  277 (405)
T TIGR00891       198 HAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA  277 (405)
T ss_pred             hhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH
Confidence            11000  000000000000 000    000011111111  122233333334445556667899999888999999999


Q ss_pred             HHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHH-HHHHhhcccchHHHHHHHHHHHHHhhhhhhh
Q 022127          151 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCLNYAKSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      ...+...++..++.++.|++.||+++|+...         .+.....+ ........++.+.......+.+.......+.
T Consensus       278 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (405)
T TIGR00891       278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV---------CSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGI  348 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchhhhH---------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhh
Confidence            9999999999999999999999999874321         22222211 1222222333333333323333333444455


Q ss_pred             hhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHH
Q 022127          230 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVT  281 (302)
Q Consensus       230 ~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~  281 (302)
                      ......|..| ++|+++.|+.+...++++.++|.+.|.+.|+.|+|+..+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            6677788887 889999999999999999999999999999988777666543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=1.9e-23  Score=174.60  Aligned_cols=279  Identities=16%  Similarity=0.085  Sum_probs=189.4

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      +|+..+++.|++|+|||++++++.+...++|.++||.+++.+.+. .|+..+.+.+...++. .+..+.+||+|+++++.
T Consensus       106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~  183 (393)
T PRK11195        106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQ  183 (393)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccccc
Confidence            478899999999999999999999999999999999999999875 4777777765544333 33445577765433221


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      ++++....++         .....++++++|.+........+............|.|+++.+|.++.+.|...+...++.
T Consensus       184 ~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~  254 (393)
T PRK11195        184 SWNPIALLRD---------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGI  254 (393)
T ss_pred             CCCHHHHHHH---------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            1111111110         0113467788888776555555545555566677788888889999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD  240 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (302)
                      .++++..+++.||.++++..         ..+... +.....+...++.+.......+.+.+.+...++..+..++..|+
T Consensus       255 i~g~~~~~~l~~~~~~~~~~---------~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~  324 (393)
T PRK11195        255 AVGAGAAARLVTLETVLRVL---------PAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHV  324 (393)
T ss_pred             HHHHHHHHHHhcCCcccchH---------HHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc
Confidence            99999999999987765321         123222 22222333334444344444455555666666677777887775


Q ss_pred             h--hhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc---cCcccC
Q 022127          241 C--AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS---TGERVF  302 (302)
Q Consensus       241 ~--~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  302 (302)
                      +  +|++.++.+..++++..++..+.+.+ +..| .+..+.+.+...+++..+.+.++   +++|||
T Consensus       325 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK11195        325 LVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLWRWHRRNQRQF  389 (393)
T ss_pred             cccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            3  69999999999999999999999966 5555 66666666655556555544443   344554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=1e-23  Score=181.63  Aligned_cols=260  Identities=13%  Similarity=0.027  Sum_probs=188.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|++++++...+..+|..++|.+++++.++.|||+.|++.+.++++..++..+..||+++++++..
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENF  188 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCC
Confidence            56778999999999999999999999999999999999999999999999999888887776666666666543322111


Q ss_pred             hHHHH------------HHHhcCcc-------------------------cccCCCCcchHHhhcCccHHHHHHHHHhhh
Q 022127           82 KSELR------------LIQAGKSD-------------------------SVKKRNPPSLRHLLSKLPSWTVIIANITNN  124 (302)
Q Consensus        82 ~~~~~------------~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (302)
                      +....            ...+..+.                         +.+++++....+++++|+++...+..++..
T Consensus       189 d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (485)
T TIGR00711       189 DFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLG  268 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHH
Confidence            11000            00000000                         011112222346889999998888888888


Q ss_pred             HHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh
Q 022127          125 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  204 (302)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (302)
                      ...+....++|.|+++.+|.++.+++.......++..++.++.|++.||+++|+.         ...+..+..++...+.
T Consensus       269 ~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---------~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       269 LGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL---------VTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH---------HHHHHHHHHHHHHHHh
Confidence            8888888999999999899999999999999999999999999999999987532         2244444444444433


Q ss_pred             --cc--cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          205 --YA--KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       205 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                        ..  .+.+.......+.+++.+...++......+..| ++++++.|+.+..+++|+.+|+.+.+.+.++
T Consensus       340 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       340 FTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11  123333334444555555555555555555555 8999999999999999999999999998764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.92  E-value=3e-23  Score=175.88  Aligned_cols=247  Identities=11%  Similarity=0.059  Sum_probs=157.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH--------hhcCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILFSSLGLLWLSTWTSKVTND   73 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~   73 (302)
                      |+..++++|++|+++|++++++...+.++|..+++.+++.+.        +.+|||+.|++..... ...    +..++.
T Consensus       136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~----~~~~~~  210 (434)
T PRK15075        136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFI----FLIRRS  210 (434)
T ss_pred             HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHH----HHHHHh
Confidence            556788999999999999999999999999888888887763        4689999999744322 111    112222


Q ss_pred             CCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHH-HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHH
Q 022127           74 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTV-IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  152 (302)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  152 (302)
                      +++.+   +.+++  ++      +.+.+..+++..++++.+.. ....+......+....|.|.|+++.+|++..+.++.
T Consensus       211 ~~e~~---~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~  279 (434)
T PRK15075        211 LEETE---EFLAR--KH------RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV  279 (434)
T ss_pred             cCCCH---HHHHh--hh------ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            22111   00000  00      00111224445566555543 333444556677788999999998889999999888


Q ss_pred             hhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHH---HhhcccchHHHHHHHHHHHHHhhhhhhh
Q 022127          153 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL---CLNYAKSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      .....+++.++.++.|+++||++||+..        .............   .....++.........+.+.+.+...+.
T Consensus       280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  351 (434)
T PRK15075        280 TLCVGVSNFIWLPIGGALSDRIGRRPVL--------IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGA  351 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999999999999986421        1111111111111   1111222222222222233344444455


Q ss_pred             hhhHHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhcccc
Q 022127          230 YLLNIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLG  272 (302)
Q Consensus       230 ~~~~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g  272 (302)
                      ......|..| +.|+++.|+.+..... ++.++|.+.|++.|+.|
T Consensus       352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            5667788888 8899999997665554 58899999999999877

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=2.3e-22  Score=169.00  Aligned_cols=270  Identities=13%  Similarity=0.117  Sum_probs=177.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |+..+++.|++|+|||+++.++...+.++|..+++.+++.+.+. .|||..|++.+++.++..+. .+..||+++++++ 
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~-  190 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARP-  190 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccc-
Confidence            56678899999999999999999999999999999999999885 59999999988877665443 3445554332211 


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHH-HH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW-GT  159 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~  159 (302)
                      +++.++.            .+.++++++|||.++...+..++..........+.+.++.+.+|+++.+.+......+ .+
T Consensus       191 ~~~~~~~------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~  258 (402)
T PRK11902        191 PRSLGEA------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAA  258 (402)
T ss_pred             cchhHHH------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHH
Confidence            1111000            1225778999999988777766665554444445556666768999999999876554 46


Q ss_pred             HHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhH---HHHHHhhcc-cchHHHHHHHHHHHHHhhhhhhhhhhHHh
Q 022127          160 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG---VSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQ  235 (302)
Q Consensus       160 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
                      .+++.+++|++.||+++|+.        . ..+.....   +........ ++.+.......+..+..+...........
T Consensus       259 ~i~g~~~~g~l~~r~g~~~~--------l-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  329 (402)
T PRK11902        259 TIVGALAGGTLMVRLGLYRS--------L-MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLM  329 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHH--------H-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999987532        1 12222212   222222232 33333333332222333333333344333


Q ss_pred             hhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          236 EIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       236 ~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ...+ +..++..+..+...+++..+++.+.|.+.|+.| |+..|.+.+.+.+++.++....
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        330 ALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3333 333445566666777888877789999999997 9999999888887776655433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.92  E-value=4e-23  Score=175.12  Aligned_cols=259  Identities=13%  Similarity=0.118  Sum_probs=164.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |....++.|++|+|+|++++++...+.++|.++++.+.+.+.+..|||+.|++.....++ .+......||+++   .  
T Consensus       125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~---~--  198 (426)
T PRK12307        125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKE---W--  198 (426)
T ss_pred             HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChH---H--
Confidence            566788999999999999999999999999999999999998889999999885433222 2211111222211   0  


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHH---hhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI---TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG  158 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  158 (302)
                      ++++...+++.+++..+....++++++++|.++.......   ......+....++|.|+++ .|.++.+.+...+...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~  277 (426)
T PRK12307        199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAF  277 (426)
T ss_pred             HHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence            0000000000000000111225678888888765443322   2233334467789999988 69999999998899999


Q ss_pred             HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc-ccchHHHHHHHHHHHHHh-hhhhhhhhhHHhh
Q 022127          159 TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLS-SFSQAGYLLNIQE  236 (302)
Q Consensus       159 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  236 (302)
                      +..++.++.|++.||+++|+.        . ..+.++..+....... ..+..........+.... ....+.......|
T Consensus       278 ~~~~g~~~~g~l~dr~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (426)
T PRK12307        278 GTVLGNIVWGLCADRIGLKKT--------F-SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYD  348 (426)
T ss_pred             HHHHHHHHHHHHHHHhccHHH--------H-HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            999999999999999987632        1 2333333333222222 222222121112221111 1122334556678


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHH
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  277 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  277 (302)
                      ..| ++++++.|+.+...++++.++|.+.|++.|+.| +...
T Consensus       349 ~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        349 YFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             hCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            888 789999999999999999999999999999886 5443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.92  E-value=8.6e-23  Score=179.65  Aligned_cols=283  Identities=12%  Similarity=0.094  Sum_probs=191.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-------------CCchHHHHHHHHHHHHHHHHHh
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------------GISGPFILFSSLGLLWLSTWTS   68 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------gwr~~f~~~~~~~~~~~~~~~~   68 (302)
                      |...+++.|++|+++|++.+++...+..+|.++++.++..+...+             +||+.+++.++..++. ++..+
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~  352 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALT  352 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHH
Confidence            667889999999999999999999999999999999887776543             5889888876655544 45556


Q ss_pred             hhcCCCCC---CCCCCh------------------HHHH----HHHhc-Ccc-----cccCCC----------------C
Q 022127           69 KVTNDPCN---SPFVSK------------------SELR----LIQAG-KSD-----SVKKRN----------------P  101 (302)
Q Consensus        69 ~~~~~p~~---~~~~~~------------------~~~~----~~~~~-~~~-----~~~~~~----------------~  101 (302)
                      ++||+|+.   +.+.++                  .++.    ..+.. ..+     ++++..                .
T Consensus       353 ~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (742)
T TIGR01299       353 FMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIW  432 (742)
T ss_pred             HcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHH
Confidence            68999862   111000                  0000    00000 000     000000                0


Q ss_pred             cchHHhhcCc---cHHHHHHHHHhhhHHHHHHHhhhhHHHHHh----h-----------------ccch-----------
Q 022127          102 PSLRHLLSKL---PSWTVIIANITNNWGYFVLLSWMPIYFNTV----F-----------------NVNL-----------  146 (302)
Q Consensus       102 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------------g~s~-----------  146 (302)
                      .+++++++.+   +.+.+.+.+++..++++++..|+|.++++.    +                 +++.           
T Consensus       433 ~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (742)
T TIGR01299       433 GNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYD  512 (742)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccc
Confidence            1244455543   456788888999999999999999886541    0                 0000           


Q ss_pred             --------------------------------------------------------------------------------
Q 022127          147 --------------------------------------------------------------------------------  146 (302)
Q Consensus       147 --------------------------------------------------------------------------------  146 (302)
                                                                                                      
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  592 (742)
T TIGR01299       513 NDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDE  592 (742)
T ss_pred             cchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccch
Confidence                                                                                            


Q ss_pred             --hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhh
Q 022127          147 --KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSS  224 (302)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (302)
                        ........+..++.+++.++.|+++||+|||+.         +..+.++.+++.+++...++....++..++.+++.+
T Consensus       593 ~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~---------l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~  663 (742)
T TIGR01299       593 GAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM---------LAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSI  663 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence              011233456678889999999999999997632         245566666666555555554444444455555555


Q ss_pred             hhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          225 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       225 ~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ...+....++.|++| +.|++++|+.+...++|++++|.+.+.+.+. + ...+|++.+++.+++.++.++++
T Consensus       664 ~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~~~LP  734 (742)
T TIGR01299       664 AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLALKLP  734 (742)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHHhCC
Confidence            667778888999999 8899999999999999999999999988775 2 56778877777777766665553

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=7.5e-24  Score=182.10  Aligned_cols=286  Identities=17%  Similarity=0.112  Sum_probs=180.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHH---HHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC-
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT---PIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS-   77 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-   77 (302)
                      |...+++.|++|+++|++++++.+.+..+|..+++.++   ....+..+||+.|++.++..++. ++..+++||+|+.. 
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~  224 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLV  224 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHH
Confidence            55678899999999999999999999999999999998   66667789999999966555444 34445577776421 


Q ss_pred             -CCCChHHHHHHHhc---Cccc----------------ccCCCCcchHHhhcC------ccHHHHHHHHHhhhHHHHHHH
Q 022127           78 -PFVSKSELRLIQAG---KSDS----------------VKKRNPPSLRHLLSK------LPSWTVIIANITNNWGYFVLL  131 (302)
Q Consensus        78 -~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  131 (302)
                       +...++.++...+.   .+++                +.+..+..+++.++.      +.++...+..+..........
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (481)
T TIGR00879       225 GKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM  304 (481)
T ss_pred             HcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehH
Confidence             11111111111000   0000                000001113333332      222333333333333334455


Q ss_pred             hhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh-----cc
Q 022127          132 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN-----YA  206 (302)
Q Consensus       132 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  206 (302)
                      .+.|.+.++ .|++..+.+.......++..++.++.|+++||+++|+..         ..+..+..++...+.     ..
T Consensus       305 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  374 (481)
T TIGR00879       305 YYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL---------LIGAAGMAICLFVLGILGASFV  374 (481)
T ss_pred             HHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---------HHHHHHHHHHHHHHHHHhhccc
Confidence            667776666 799998888888899999999999999999999976422         122333333332222     11


Q ss_pred             cc-----hHHHHHHHHHHHHHhhh-hhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Q 022127          207 KS-----PAVAAVLITIALSLSSF-SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  279 (302)
Q Consensus       207 ~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  279 (302)
                      ++     .........+...+.+. ..+.......|..| ++|+++.|+.+...+++++++|.+.+.+.++.+ +...|+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~  453 (481)
T TIGR00879       375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFI  453 (481)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceeh
Confidence            11     22222222222222332 23444566688888 789999999999999999999999999998876 888888


Q ss_pred             HHHHHHHHHHHHHHhhccCc
Q 022127          280 VTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~  299 (302)
                      +.+++++++.++.+++.+++
T Consensus       454 ~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       454 FFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             hHHHHHHHHHHHHheecccC
Confidence            88888887777665554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=99.92  E-value=1.6e-22  Score=173.48  Aligned_cols=262  Identities=10%  Similarity=0.025  Sum_probs=183.0

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|+++.++.....++|..++|.+++.+.++.|||+.|++......+..+......|+++.+.++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  196 (471)
T PRK10504        117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFD  196 (471)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCC
Confidence            56678889999999999999999999999999999999999999999999999887777666665555555443322222


Q ss_pred             hHHHHH-----------HHhcCc------------------------ccccCCCCcchHHhhcCccHHHHHHHHHhhhHH
Q 022127           82 KSELRL-----------IQAGKS------------------------DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWG  126 (302)
Q Consensus        82 ~~~~~~-----------~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (302)
                      ......           .++...                        +++..+++....+++|||+++......++....
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  276 (471)
T PRK10504        197 LSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIG  276 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHH
Confidence            111000           000000                        011111122223588999999888888888777


Q ss_pred             HHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc
Q 022127          127 YFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA  206 (302)
Q Consensus       127 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (302)
                      ......+.|.|+++..|.++.+.++......++..++.++.+++.||+++|+.        + ..+..+..+....+...
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~--------~-~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV--------L-VATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--------H-HHHHHHHHHHHHHHHhc
Confidence            77777889999998789999999999888888888888999999999987632        2 23333333332222221


Q ss_pred             ---cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          207 ---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       207 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                         ++.+.......+.+.+.+...+.......+..| +++++++|+.++..++|..+|+.+.|.+.+..|
T Consensus       348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        348 ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               222222222333334455556666666666666 889999999999999999999999999987654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=2.1e-23  Score=176.27  Aligned_cols=265  Identities=15%  Similarity=0.113  Sum_probs=178.5

Q ss_pred             cchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcc
Q 022127           15 HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSD   94 (302)
Q Consensus        15 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   94 (302)
                      +++++.+|......++|..++|.+++.+.+ .+|++.|++.+++.++..++.++..+|++++.+. +++++        +
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~  206 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKV-ANALG--------A  206 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhh-ccchh--------c
Confidence            456778889999999999999999998875 5999999998877776665555544443322110 00000        0


Q ss_pred             cccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh---ccchhhhhHHhhHHHHHHHhhhhhhhccc
Q 022127           95 SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVNLKQAAWFSAVPWGTMAVSGYMAGKAS  171 (302)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  171 (302)
                      ++++....+.++.+|||+++...+..+...........+.|.|+.+.+   +.+..+.+...+...+...++.+..|++.
T Consensus       207 ~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~  286 (420)
T PRK09528        207 NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFII  286 (420)
T ss_pred             ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111234556888998877666555555555555567788876643   45666778888888899999999999999


Q ss_pred             chhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHH-H
Q 022127          172 DSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGI-A  249 (302)
Q Consensus       172 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~-~  249 (302)
                      ||+++|+..         ..+.++..+........++++.......+.+...+...........+..| +.+++..+. .
T Consensus       287 dr~g~~~~~---------~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  357 (420)
T PRK09528        287 NRIGAKNAL---------LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGF  357 (420)
T ss_pred             HHhCcchhh---------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehH
Confidence            999987432         23444444455555556666554444444444444444444556666666 778877665 6


Q ss_pred             HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          250 NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       250 ~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      +....+|.+++|.+.|++.|..| |+..|...+++.++..++.....+++
T Consensus       358 ~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        358 QFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77888999999999999999887 99999988888777666655554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=7.3e-23  Score=176.58  Aligned_cols=286  Identities=14%  Similarity=0.106  Sum_probs=174.2

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-----------------------hcCCchHHHHHHHH
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-----------------------TIGISGPFILFSSL   58 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----------------------~~gwr~~f~~~~~~   58 (302)
                      |....+++|++|+++|++++++.+....+|..+++.++..+..                       .++||+.|.+.+++
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            6678999999999999999999999999999999988876542                       24799999887766


Q ss_pred             HHHHHHHHHhhhcCCCCC---CCCCChHHHHHHHh----cCc---cc----c--cCCCCcchHHhhcC---ccH----HH
Q 022127           59 GLLWLSTWTSKVTNDPCN---SPFVSKSELRLIQA----GKS---DS----V--KKRNPPSLRHLLSK---LPS----WT  115 (302)
Q Consensus        59 ~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~----~~~---~~----~--~~~~~~~~~~~~~~---~~~----~~  115 (302)
                      +++.. +..+++||+|+-   +++.+++.++...+    +.+   ++    +  ++..+.++++++++   ++.    +.
T Consensus       214 ~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (502)
T TIGR00887       214 ALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG  292 (502)
T ss_pred             HHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence            65544 445668999872   22221111111110    000   00    0  01112357777753   222    12


Q ss_pred             HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhH------------HhhHHHHHHHhhhhhhhcccchhhccCCchhH
Q 022127          116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW------------FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL  183 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  183 (302)
                      .....+......++...+.|.++++ .|++..+.+.            ......++.+++.++.++++||+|||+..   
T Consensus       293 ~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l---  368 (502)
T TIGR00887       293 TAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ---  368 (502)
T ss_pred             HHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH---
Confidence            2233444455666777888999976 7876543221            12334456677888999999999987432   


Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcc--c-chHHHHHHHHHHHHHh-hhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHH
Q 022127          184 VRKIMQSIGFIGPGVSLLCLNYA--K-SPAVAAVLITIALSLS-SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~  258 (302)
                            ..+..+..++...+...  . +.........+...+. ....+..+....|.+| +.|+++.|+.+...+++++
T Consensus       369 ------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~  442 (502)
T TIGR00887       369 ------LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI  442 (502)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH
Confidence                  12333323222222211  1 1111112222222222 2233455667789998 8899999999999999999


Q ss_pred             HHHHHhhhhhcccc---------chhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          259 ISTIGTGYFVQWLG---------SFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       259 i~~~i~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ++|.+.+.+.|..+         ++...+.+.+++.+++.+..+ +.+++
T Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~-~lpEt  491 (502)
T TIGR00887       443 IGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPET  491 (502)
T ss_pred             HHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHhe-EeccC
Confidence            99999999988431         245677777777777665543 33443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=2.1e-22  Score=168.03  Aligned_cols=260  Identities=12%  Similarity=0.055  Sum_probs=184.7

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.++  +++|+++++......++|..+||++++++.+++|||..|++.++..++.. +.....||++++.   +
T Consensus       113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~---~  186 (382)
T PRK11128        113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLLRPTIMPQG---E  186 (382)
T ss_pred             cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHccCCCCCcc---c
Confidence            4555666666  45678888999999999999999999999999999999998776444433 3333334322111   0


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                       ++++          .++...++++++|+|+++...+..++..........+.|.|+++ .|.++.+.|...+...+...
T Consensus       187 -~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~  254 (382)
T PRK11128        187 -SRQQ----------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEV  254 (382)
T ss_pred             -cccc----------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHH
Confidence             0000          00112367899999999988887777777777778888999977 89999999999998888899


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccch
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDC  241 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (302)
                      +..+..+++.||+++|+        . +..+.....+........++.+.......+.+...+...+.......+..+++
T Consensus       255 ~~~~~~g~l~~r~~~~~--------~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  325 (382)
T PRK11128        255 LIFAFSNRLFRRWSARD--------L-LLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSE  325 (382)
T ss_pred             HHHHHHHHHHHHCCHHH--------H-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhh
Confidence            99999999999998652        2 23455555555555555666665555555556656666666666666766677


Q ss_pred             hhhHHHHHHHH-HHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q 022127          242 AGFLHGIANSA-GTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  290 (302)
Q Consensus       242 ~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  290 (302)
                      +++..+..+.. ...|..++|.+.|.+.|+.| + ..++..+++.+++.+
T Consensus       326 ~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        326 VIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF  373 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            78888888744 45677899999999999987 4 456666655554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=2.6e-22  Score=168.66  Aligned_cols=260  Identities=15%  Similarity=0.103  Sum_probs=175.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+|+|++++++...+..+|..+++.+++.+.+.+|||+.+++..++.++....    .++.|++++.. 
T Consensus       131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-  205 (399)
T PRK05122        131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL----ARPRPAVPPVK-  205 (399)
T ss_pred             chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH----HhcCCCCCCCC-
Confidence            5566778899999999999999999999999999999999999999999988766554433222    22222211110 


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                       ++                +.++++.++  +.+.......+..........+.|.|+++ .|.+  +.+...+...++..
T Consensus       206 -~~----------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~  263 (399)
T PRK05122        206 -GE----------------RLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFV  263 (399)
T ss_pred             -cc----------------chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHH
Confidence             00                011223332  22222233333444555666788888876 5653  45666677788889


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++.+..|++.||+++|+.        . ..+..+..++.......++.+.......+.+++.+...+.......+..| +
T Consensus       264 ~~~~~~g~l~~r~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  334 (399)
T PRK05122        264 GARLLFGNLINRLGGLRV--------A-IVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ  334 (399)
T ss_pred             HHHHHHHHHHHHhccHHH--------H-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH
Confidence            999999999999986532        1 23334444444444444555444444444445555555555555556666 8


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +++++.|+.+...++|..++|.+.|.+.|+.| ++..+.+.+++.+++.+....+.++
T Consensus       335 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        335 NRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            89999999999999999999999999999886 9999999888888877666555443

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=2.8e-22  Score=168.08  Aligned_cols=259  Identities=15%  Similarity=0.092  Sum_probs=172.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+..+++.|++|+|+|++++++.+.+.+.|..++|++++.+.+..|||+.+.+..+..++...    ..++.|+++++.+
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  206 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA----FNGTVRKVPAHAG  206 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH----HHHhccCCCCCcc
Confidence            455678889999999999999999999999999999999999999999877765444333221    1222222111000


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                        +                +.+.++..+  .++...+..++..........+.|.|+++ .|.+.  .+.......++.+
T Consensus       207 --~----------------~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~  263 (392)
T PRK12382        207 --E----------------RPSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFV  263 (392)
T ss_pred             --c----------------CchHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHH
Confidence              0                001122221  11221222223334455566778888877 56553  4555666777888


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++++..|++.||+++|+...         .+..+..+........++.+.......+.+.+.+...+.......+..| +
T Consensus       264 ~~~~~~g~l~~r~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  334 (392)
T PRK12382        264 LMRVLFGWMPDRFGGVKVAI---------VSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ  334 (392)
T ss_pred             HHHHHHHHHHHhcCCCeehH---------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH
Confidence            99999999999999875431         2333333344344444554444444444445455555555566666665 8


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      +||++.|+.+...++|..++|.+.|.+.|+.| |+..|.+.+++.+++.++.+...+
T Consensus       335 ~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        335 VRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999887 999999999888888776665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=6.8e-23  Score=176.26  Aligned_cols=286  Identities=14%  Similarity=0.099  Sum_probs=170.4

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH--------hhcCCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      +|...++++|++|+++|++++++.+.+..+|..+++.+++.+.        +.+|||+.|++.+++.++..+ ..+++||
T Consensus       138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~  216 (479)
T PRK10077        138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPE  216 (479)
T ss_pred             hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCC
Confidence            3667889999999999999999999999999999988776554        356999999998877777554 4556888


Q ss_pred             CCCCCCCC-ChHHHHH-HHhcCcccccCCCCcchHHhhc-----CccHH-----HH----HHHHHhhhHHHHHHHhhhhH
Q 022127           73 DPCNSPFV-SKSELRL-IQAGKSDSVKKRNPPSLRHLLS-----KLPSW-----TV----IIANITNNWGYFVLLSWMPI  136 (302)
Q Consensus        73 ~p~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~  136 (302)
                      +|+..... ++++.+. .++....++.++...+.++..+     .+..+     ..    ....+......+....+.|.
T Consensus       217 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  296 (479)
T PRK10077        217 TPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPE  296 (479)
T ss_pred             CcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            87531111 1111111 1110000000000001111111     01110     00    11111112223334456677


Q ss_pred             HHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc---ccch-HHH
Q 022127          137 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---AKSP-AVA  212 (302)
Q Consensus       137 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~  212 (302)
                      +.++ .|.+...........++...++.++.++++||++||+..         ..+..+..++...+..   .+.. ...
T Consensus       297 i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~---------i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        297 IFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ---------IIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH---------HHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            7666 788877777777788889999999999999999976322         2333333333333221   1111 112


Q ss_pred             HHHHHHHHHHhhh-hhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh------ccccchhHHHHHHHHH
Q 022127          213 AVLITIALSLSSF-SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV------QWLGSFQAFLTVTAGL  284 (302)
Q Consensus       213 ~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~------~~~g~~~~~~~~~~~~  284 (302)
                      .....+...+.+. ..+..+....|..| ++|+++.|+.+...++++.+++.+.+.+.      |..+ +...|++.++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  445 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence            2222222222222 23556788889888 88999999999999999999977776544      4554 56777777777


Q ss_pred             HHHHHHHHHhhccC
Q 022127          285 YFVTTIFWNLYSTG  298 (302)
Q Consensus       285 ~~~~~~~~~~~~~~  298 (302)
                      .+++.++.+++.++
T Consensus       446 ~~~~~~~~~~~~~e  459 (479)
T PRK10077        446 GVLAALFMWKFVPE  459 (479)
T ss_pred             HHHHHHHHHhcccc
Confidence            66666665555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=1.5e-22  Score=190.64  Aligned_cols=269  Identities=14%  Similarity=0.067  Sum_probs=192.9

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      .|+..+++.|++|+++|++++|+.+++.++|.++||++++++.+..+|++.|....+..++ .++..+.+|+++++.+..
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  204 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDL  204 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCC
Confidence            4788999999999999999999999999999999999999999999999999554444443 344444466554322211


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      +.+. ...++         ....++.+.++|.++...+..+..+........++|.|+++.+|.++.+.+++.+...++.
T Consensus       205 ~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~  274 (1140)
T PRK06814        205 KIDR-NIIRS---------TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGV  274 (1140)
T ss_pred             eecc-chHHH---------HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            1100 00000         0124678889999999988888888888888899999999989999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--------------------ccchHHHHHHHHHHH
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--------------------AKSPAVAAVLITIAL  220 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~  220 (302)
                      +++.+..|++.|+..+++...         .+.++.++..+.+..                    ..+.+...+...+.+
T Consensus       275 ~ig~~~~g~l~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        275 AVGSFLASKLSEGRITLLYVP---------IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHhCCceeeeeeh---------HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            999999999998876654221         111111111111111                    134444444445555


Q ss_pred             HHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          221 SLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      ++.+...+...+..++..| +++|+++|+.++..+++..+++.+.|.+.+...++...+.+.+.+.++..
T Consensus       346 ~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        346 AAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            6666666777888888887 88999999999999999999999999998654446666655554444333

>PRK11043 putative transporter; Provisional

Probab=99.91  E-value=9.2e-22  Score=165.44  Aligned_cols=242  Identities=10%  Similarity=0.079  Sum_probs=172.2

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS   83 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   83 (302)
                      ..+++.|++|++++++..+.......+|..++|.+++++.++.|||+.|++.+++.++..+..++ .+|++++++  +++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~  191 (401)
T PRK11043        115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKPSKKARK--QSQ  191 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCCCCCccc--cch
Confidence            45678999999999999999999999999999999999999999999999988877776655544 444332211  000


Q ss_pred             HHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhh
Q 022127           84 ELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVS  163 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~  163 (302)
                                      ++.++++++|+|+++...+.........+....+.|.++++ .|+++.+.+.......++..++
T Consensus       192 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g  254 (401)
T PRK11043        192 ----------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVG  254 (401)
T ss_pred             ----------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence                            11246788899988876666666666667777889998877 7999999998888878888899


Q ss_pred             hhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccch
Q 022127          164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDC  241 (302)
Q Consensus       164 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (302)
                      .+..+++.||+++|+..     +.. .....+..........  .++.........+.+...+...+.......+..|++
T Consensus       255 ~~~~~~l~~r~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (401)
T PRK11043        255 GYGCRAALQKWGGEQLL-----PWL-LVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQA  328 (401)
T ss_pred             HHHHHHHHHHcCHHHHH-----HHH-HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Confidence            99999999999876321     111 1122222222222211  233333333344444555555666666666667888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          242 AGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       242 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      ++++.|+.+.....++..++.+.|.+.|..
T Consensus       329 ~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        329 TGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999998754

>TIGR01272 gluP glucose/galactose transporter

Probab=99.91  E-value=7.6e-22  Score=159.11  Aligned_cols=257  Identities=12%  Similarity=0.081  Sum_probs=183.8

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh----------------cCCchHHHHHHHHHHHHHHH
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST----------------IGISGPFILFSSLGLLWLST   65 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------------~gwr~~f~~~~~~~~~~~~~   65 (302)
                      ++++.++++..|+|++++.+++.+...++|..++|.+++.+...                .+|+++|++.+.+..+..+.
T Consensus        29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999988731                47999999777766555544


Q ss_pred             HHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh--hc
Q 022127           66 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV--FN  143 (302)
Q Consensus        66 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g  143 (302)
                      +.+ . +.|+.+++.++++    .+    +    +....++.+++|.++...+..+++.....+...|.+.|+++.  +|
T Consensus       109 ~~~-~-~~p~~~~~~~~~~----~~----~----~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g  174 (310)
T TIGR01272       109 FAF-L-PLPELQEADVARV----SS----G----DTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALG  174 (310)
T ss_pred             HHH-c-cCCCCCccccccc----cc----c----cccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            333 2 2222111111000    00    0    001223567888898888888888878999999999999863  68


Q ss_pred             cchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHh
Q 022127          144 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  223 (302)
Q Consensus       144 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
                      +++.+.+...+....+.++|+++.+++.||+++|+.        + ..+..+..+...+....++... .....+.+++.
T Consensus       175 ~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~--------l-~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~  244 (310)
T TIGR01272       175 LPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY--------L-AFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFN  244 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------H-HHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH
Confidence            999999999999999999999999999999987532        2 2333333333333333333222 23444555677


Q ss_pred             hhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Q 022127          224 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       224 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      +..+|...+...+..|++.+++.++. ....+|+++.|.+.|.+.|..| .+..+++...+
T Consensus       245 s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~~  303 (310)
T TIGR01272       245 SIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHHH
Confidence            77788888888887887777888875 5678999999999999999887 77777644433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=1.5e-21  Score=163.55  Aligned_cols=259  Identities=13%  Similarity=0.114  Sum_probs=181.6

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHH
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE   84 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   84 (302)
                      .++..|..++++++...+....+..+|..+|+...+++.+++|||..|++.+++.++..+..++..|+++++++ .+++ 
T Consensus       119 d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~~~~-  196 (390)
T TIGR02718       119 DGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE-APLA-  196 (390)
T ss_pred             HHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-cchh-
Confidence            34566777777788888888888899999999999999999999999999998887766555443333322111 0000 


Q ss_pred             HHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH-HHHhh
Q 022127           85 LRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG-TMAVS  163 (302)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~  163 (302)
                                     ...+.++.+|+|.++......++..........+.+.|++| .|+++++.+........ ...++
T Consensus       197 ---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g  260 (390)
T TIGR02718       197 ---------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLG  260 (390)
T ss_pred             ---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHH
Confidence                           11246788999998888888888877788888889999988 79999999998887764 66677


Q ss_pred             hhhhhcccchhhccCCchhHHHHHHHHHhhhhh-HHHHHHhh--c---ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhh
Q 022127          164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP-GVSLLCLN--Y---AKSPAVAAVLITIALSLSSFSQAGYLLNIQEI  237 (302)
Q Consensus       164 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
                      .++.|++.||+++|+.        +. .+.... ........  .   .++.........+..+..+...+.......+.
T Consensus       261 ~~~~g~l~~r~g~~~~--------l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  331 (390)
T TIGR02718       261 CGGGAWLVRRAGLWRT--------FI-LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRF  331 (390)
T ss_pred             HHHHHHHHHHhhHHHH--------HH-HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999997632        21 222222 11111111  1   12222222223333344555555555555444


Q ss_pred             -cc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022127          238 -AP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       238 -~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  291 (302)
                       .| +++++.+++.+...++|..++|.+.|.+.|..| ++..|...+++.+++.+.
T Consensus       332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       332 AGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             hCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence             45 788999999999999999999999999999887 888888887777666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=6.7e-22  Score=163.19  Aligned_cols=243  Identities=24%  Similarity=0.404  Sum_probs=202.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+..+||+.+++.+.+.++..+...+ .+          
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------  174 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL----------  174 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH----------
Confidence            5677899999999999999999999999999999999999999999999999988877776555443 22          


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                                                   |+++...+..++..........+.|.+.++.+|.+..+.+.......++..
T Consensus       175 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (352)
T cd06174         175 -----------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGI  225 (352)
T ss_pred             -----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                                         455677777888888888899999999999779999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++.++.+++.||+++|+.        ....+..+..++.......++.+.......+.+.+.+...+.......|..| +
T Consensus       226 i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (352)
T cd06174         226 LGALLGGLLSDRLGRRRL--------LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPE  297 (352)
T ss_pred             HHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH
Confidence            999999999999987630        2235555555666655555555555666666667777777888888899888 8


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      +|++..|+.+...+++..++|.+.|.+.|..+ ++..+.+.+++.+++.+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         298 ARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999998775 89999998888888776554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=2.4e-22  Score=168.73  Aligned_cols=256  Identities=20%  Similarity=0.209  Sum_probs=174.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+++|++++++...+..+|..+++.+++.+.+..|||+.|++.+++.++..++....+||+++...+.+
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR  203 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC
Confidence            56788999999999999999999999999999999999999999999999999877777666666666777654221111


Q ss_pred             hHHH-HHHH---hcC--------ccccc-CC-CCcchHHhhcC---ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhcc
Q 022127           82 KSEL-RLIQ---AGK--------SDSVK-KR-NPPSLRHLLSK---LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV  144 (302)
Q Consensus        82 ~~~~-~~~~---~~~--------~~~~~-~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (302)
                      +++. +..+   .+.        .++++ ++ .+...+.++++   +..+...+..++.....+....+.|.+.+ ..|.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~  282 (398)
T TIGR00895       204 PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGF  282 (398)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence            1111 1000   000        00000 00 11112223333   33444455555666666777788885554 4899


Q ss_pred             chhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhh
Q 022127          145 NLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSS  224 (302)
Q Consensus       145 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (302)
                      ++.+.+...+...++..++.++.|++.||+++|+         ....................+.........+.+.+.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV---------TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH---------HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998651         1112222222222222223344444445555556666


Q ss_pred             hhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          225 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       225 ~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      ...+...+...|..| ++|+++.|+.+...++|..++|.+.|.+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            667777888888888 8899999999999999999999999976

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.91  E-value=1e-22  Score=169.14  Aligned_cols=244  Identities=18%  Similarity=0.213  Sum_probs=168.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh----------hcCCchHH-HHHHHHHHHHHHHHHhhh
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS----------TIGISGPF-ILFSSLGLLWLSTWTSKV   70 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~gwr~~f-~~~~~~~~~~~~~~~~~~   70 (302)
                      +...+++.|++|+++|++++++.....++|..+++.+++.+.+          +.+||+.| ...+++..+..++.....
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  188 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG  188 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence            3457789999999999999999998888888888888877665          24899999 444555555555555556


Q ss_pred             cCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           71 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        71 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                      +|+|+++++.++.+   .++.. .+.+++.....++.+++|+++...+..++.....+....+.|.|+++.+|.++.+++
T Consensus       189 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  264 (366)
T TIGR00886       189 ADTPPGKPATGKLS---FKGAR-WSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAG  264 (366)
T ss_pred             ccCCcccccchhcc---ccccc-ccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            66664322111100   00000 000111112467788999999888888877777788889999999998999999999


Q ss_pred             HHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhh
Q 022127          151 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQA  228 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  228 (302)
                      .+.+...+...++.++.|++.||+++|+.       ..............+.....+  +.........+.....+...+
T Consensus       265 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  337 (366)
T TIGR00886       265 AYASLGGLLGSLARPLGGAISDRLGGARK-------LLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNG  337 (366)
T ss_pred             HHHHHHHHHHHHHhhccchHHHhhccchh-------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccc
Confidence            99899999999999999999999998732       221222222222222222222  333334444555556666677


Q ss_pred             hhhhHHhhhccchhhhHHHHHHHHHHHH
Q 022127          229 GYLLNIQEIAPDCAGFLHGIANSAGTLA  256 (302)
Q Consensus       229 ~~~~~~~~~~p~~~~~~~g~~~~~~~~g  256 (302)
                      ..+....+..|+++|+++|+.+..+++|
T Consensus       338 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       338 STFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             hhhhcchhhchhhcccHHHHHHHhccCC
Confidence            7788888889999999999999988875

>TIGR00901 2A0125 AmpG-related permease

Probab=99.91  E-value=5.9e-22  Score=164.00  Aligned_cols=230  Identities=10%  Similarity=0.042  Sum_probs=164.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC--------CchHHHHHHHHHHHHHHHHHhhhcCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--------ISGPFILFSSLGLLWLSTWTSKVTND   73 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--------wr~~f~~~~~~~~~~~~~~~~~~~~~   73 (302)
                      |+..+++.|++|+|+|+++.++...+.++|.++++.+++.+.++.|        ||..|++.++..++..+..++..||+
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4567889999999999999999999999999999999999988888        99999998887766554444445553


Q ss_pred             CCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCcc---HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           74 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP---SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                      ++ +++.++++++.            .+.++++++++|.   ++...+..++.....+....+.|.|+++ +|+++.+.+
T Consensus       182 ~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g  247 (356)
T TIGR00901       182 QE-DASVPKPLTQA------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIA  247 (356)
T ss_pred             Cc-ccccchhHHHH------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence            22 21111111111            0124667778775   7777777777777888888999999998 899999999


Q ss_pred             HHhhHHH-HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-----------cchHHHHHHHHH
Q 022127          151 WFSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-----------KSPAVAAVLITI  218 (302)
Q Consensus       151 ~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  218 (302)
                      ......+ +...++.+++|++.||+|+|+.        + ..+.++..+........           ++.+.......+
T Consensus       248 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--------l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       248 LVAKINGLLGAILGGLIGGIIMQPLNILYA--------L-LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhhhhHHHH--------H-HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            8877655 5778999999999999997632        1 12223333322222111           223334444455


Q ss_pred             HHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHH
Q 022127          219 ALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGT  254 (302)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~  254 (302)
                      ..+..+...+...+...+..| +++|+..|+.+...+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            566677778888899999888 889999999887765

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.90  E-value=2.2e-22  Score=170.64  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=222.0

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC--
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF--   79 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~--   79 (302)
                      .++..++..|| +|+|+.++|+...+.++|..+-|.+..++.+.+|||+.+++.+.+.+-.++......|..++..+.  
T Consensus       154 ~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~  232 (509)
T KOG2504|consen  154 LPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE  232 (509)
T ss_pred             cchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh
Confidence            34556777777 467999999999999999999999999999999999999999998877666666655533322111  


Q ss_pred             --------------------C------Ch----HHHHHHHhcCccccc-CCCCcc---hHHhhcCccHHHHHHHHHhhhH
Q 022127           80 --------------------V------SK----SELRLIQAGKSDSVK-KRNPPS---LRHLLSKLPSWTVIIANITNNW  125 (302)
Q Consensus        80 --------------------~------~~----~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  125 (302)
                                          .      ..    .+.+..++..++.+. ..+...   ..+++++|.++.+.+...+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~  312 (509)
T KOG2504|consen  233 KDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL  312 (509)
T ss_pred             hhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH
Confidence                                0      00    000000000000010 111111   2688999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      ++.....++|.|.++ .|++..+++.+.+..++..++++++.|++.|+...+       ++.+..++.+..++.....+.
T Consensus       313 g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~  384 (509)
T KOG2504|consen  313 GFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLIAGLARLFLPF  384 (509)
T ss_pred             HHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997 899999999999999999999999999999999854       455556777777777777777


Q ss_pred             ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Q 022127          206 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      .++.+.......+.++..+.........+.|..+ ++-..+.|+...++.++..+||++.|++.|.+|+|...|+.++..
T Consensus       385 ~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~  464 (509)
T KOG2504|consen  385 ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC  464 (509)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence            7777666666666666666655555667788887 889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 022127          285 YFVTTIFWNLYS  296 (302)
Q Consensus       285 ~~~~~~~~~~~~  296 (302)
                      .+++...+++..
T Consensus       465 ~~~s~~~~~~~~  476 (509)
T KOG2504|consen  465 FLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHhH
Confidence            999887766554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.90  E-value=1.9e-21  Score=165.76  Aligned_cols=271  Identities=14%  Similarity=0.135  Sum_probs=204.6

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |+-++++.|..|+++..+++++.+...+++.++||.++|.+...+|-.+.|.+.++..++....... .++++++++.  
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~-~~~~~~~~~~--  198 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR-WKPPPPPSSL--  198 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccc--
Confidence            7889999999999999999999999999999999999999999999999999877655443333332 3322221111  


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ++|  ...+        +.+..++.+.++|.+.......+............+|.+.++.+|.++...|++.+..+++.+
T Consensus       199 ~~e--~~~~--------~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai  268 (524)
T PF05977_consen  199 PRE--RFFS--------ALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAI  268 (524)
T ss_pred             chh--hhhh--------hHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            111  1111        112246666677877766665666565555667778999999999999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      +|+++.+++.+|+++++..         ..+.+..++.++.+.+.++.+.....+.+.+.+.........+..++..| +
T Consensus       269 ~Gal~~~~l~~~~~~~~lv---------~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~  339 (524)
T PF05977_consen  269 LGALLLPRLRRRLSSRRLV---------LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW  339 (524)
T ss_pred             HHHHHHHHhhcccCcchhh---------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            9999999998888754321         24555666667777777777776666677777667667777788888888 7


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .+|++++++++....+..+|..+.|.+.|..| .+..+.+.++..+++.++....
T Consensus       340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999987 7777877777666666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.90  E-value=1.9e-21  Score=163.05  Aligned_cols=240  Identities=14%  Similarity=0.062  Sum_probs=158.0

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.+++.++..++.....||+++++++.+
T Consensus       110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  189 (392)
T PRK10473        110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA  189 (392)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc
Confidence            45677889999999999999999999999999999999998888999999999988887777666666666543221110


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ++                .....++.++||+++...+...+..........+.|.++++.+|+++.+.+...+...++.+
T Consensus       190 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  253 (392)
T PRK10473        190 SS----------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSM  253 (392)
T ss_pred             cc----------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            00                01134567788887766665555555555666777888888889999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++.+..+++.||+++|+.        . ..+.....++...+...++.........+...+.+...+  .....+..| +
T Consensus       254 ~~~~~~~~l~~r~g~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~  322 (392)
T PRK10473        254 TVSFSTPFALGIFKPRTL--------M-LTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFG--VAMSQALGPFS  322 (392)
T ss_pred             HHHHHHHHHHHhcCHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhccCc
Confidence            999999999999987532        1 233333344443333333332222222222222222222  233344555 3


Q ss_pred             h-hhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          241 C-AGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       241 ~-~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      + .+.+.    ....++..+++.+.+++.++.|
T Consensus       323 ~~~g~~~----~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        323 LRAGVAS----STLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             ccccHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence            3 33444    4445566666777777766665

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=5e-21  Score=161.06  Aligned_cols=264  Identities=9%  Similarity=-0.026  Sum_probs=176.7

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS   83 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   83 (302)
                      ..+++.|++|+++|++++++......+|..+||.+++.+.++.|||+.|++.+++.++..+..++.+||+++++++..+ 
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-  203 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS-  203 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC-
Confidence            4567889999999999999999999999999999999999999999999999888877665555557776432211100 


Q ss_pred             HHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhh
Q 022127           84 ELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVS  163 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~  163 (302)
                      .++             ...++++++|||+++...+..++.....+.+..+.|.++++.+|.++.+.++.......+..++
T Consensus       204 ~~~-------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~  270 (413)
T PRK15403        204 AKS-------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVA  270 (413)
T ss_pred             hHH-------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            000             0124678899999999888888888888888888999999988999999999888778888887


Q ss_pred             hhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhh
Q 022127          164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAG  243 (302)
Q Consensus       164 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  243 (302)
                      +.+.+++.+|..+++....  ...+..++..+......  ...++.........+...+.+...+..........+..+|
T Consensus       271 ~~l~~~~~~~~~~~~~~~~--~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G  346 (413)
T PRK15403        271 NAIVARFVKDPTEPRFIWR--AVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKG  346 (413)
T ss_pred             HHHHHHHhccCCchhHHHH--HHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCc
Confidence            7777776544333221100  00111122222111111  1122222223344444445555555554433222234589


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q 022127          244 FLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       244 ~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  287 (302)
                      ++.|+.+.....+...++...+++.++.  -...+....++..+
T Consensus       347 ~a~a~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~  388 (413)
T PRK15403        347 TVSASLNMVILMVMAVSVEIGRWLWFNG--GRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHH
Confidence            9999999999999999999999988773  34455544444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=8.3e-21  Score=159.27  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=174.5

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK   82 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (302)
                      ....+..|++++++|+++++..+.+..+|..++|.+++.+.+..|||+.|++.++..++..+...+..||+++++++.  
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  193 (394)
T PRK11652        116 MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR--  193 (394)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch--
Confidence            345677889999999999999999999999999999999999899999999988877766655555566654322111  


Q ss_pred             HHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHh
Q 022127           83 SELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAV  162 (302)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~  162 (302)
                      ++   .            +.++++.+++|+++...+..+........+..+.+.++++.+|.++.+.++.......+..+
T Consensus       194 ~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  258 (394)
T PRK11652        194 TR---V------------LASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF  258 (394)
T ss_pred             hH---H------------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            00   0            12467788899888766666655556666667788899888999999999888887888888


Q ss_pred             hhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc
Q 022127          163 SGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD  240 (302)
Q Consensus       163 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (302)
                      ++.+.+++.||.+++        ............+.......  ..+.+.......+.+.+.+...+.......+..|+
T Consensus       259 g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  330 (394)
T PRK11652        259 GAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY  330 (394)
T ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            888888888888632        11111222222222222111  12333344444555555666677777778888888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      +++++.++.+...++|+.+++.+.+.+.+.
T Consensus       331 ~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        331 LAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            899999999999999999999999988765

>PRK10054 putative transporter; Provisional

Probab=99.90  E-value=1.5e-21  Score=163.41  Aligned_cols=263  Identities=14%  Similarity=0.077  Sum_probs=179.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...++..|.+|+++|++++++.....++|.+++|.+++.+.+ .+||..|++.+++.++..+...+.+||+++++++  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~--  191 (395)
T PRK10054        115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT--  191 (395)
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccccc--
Confidence            4566778899999999999999999999999999999998875 7999999998877776655555545554322111  


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh--hccchhhhhHHhhHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGT  159 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~  159 (302)
                      +++ +              ..+.++.+|||+++...+..++..........+.+.|..+.  .+.+....+.........
T Consensus       192 ~~~-~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  256 (395)
T PRK10054        192 ETG-S--------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAM  256 (395)
T ss_pred             chh-h--------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhh
Confidence            000 0              01236678999998888777777766666666777777543  345566667777776666


Q ss_pred             HHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc
Q 022127          160 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQEIA  238 (302)
Q Consensus       160 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (302)
                      .....+..|++.||.++|+.         ...++.+..++....... ++.+.......+.+.+.....+.....+.+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~  327 (395)
T PRK10054        257 VVSLQYSVGRRLNAANIRPL---------MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA  327 (395)
T ss_pred             eeeehhHHHHHHccCCchhH---------HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence            66777788888999876532         123444444444333332 33333333334444444444556666777777


Q ss_pred             c-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          239 P-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       239 p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      | +.+++..+..+ ...+|..+||.+.|.+.|+.| +...+.+.+.+..+..++..
T Consensus       328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHH
Confidence            7 78899888655 677899999999999999986 77777776666666555444

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=1.2e-21  Score=169.51  Aligned_cols=275  Identities=14%  Similarity=0.056  Sum_probs=176.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC--CC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS--PF   79 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~--~~   79 (302)
                      |...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. +++||+|+..  +.
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~  274 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQG  274 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCC
Confidence            5677889999999999999999999999999999998877653   9999999888877766555 5688887521  11


Q ss_pred             CChHHHHHHHh-----c------------CcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 022127           80 VSKSELRLIQA-----G------------KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF  142 (302)
Q Consensus        80 ~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (302)
                      ..++..+..++     +            .+++++++++.+.++++++|+++...+................+.+..+ .
T Consensus       275 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  353 (505)
T TIGR00898       275 RIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-L  353 (505)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-c
Confidence            11111111000     0            0000111123477889999988776655544433332222222333333 4


Q ss_pred             ccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch--HHHHHHHHHHH
Q 022127          143 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVLITIAL  220 (302)
Q Consensus       143 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  220 (302)
                      +.+..   ......++..+++.++.+++.||+|||+.         ...+.++.+++.+.+...++.  +.......+..
T Consensus       354 ~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  421 (505)
T TIGR00898       354 GGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT---------MAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK  421 (505)
T ss_pred             CCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            54433   23334567778888999999999997632         124444444444444333322  33334444455


Q ss_pred             HHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          221 SLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ++.....+..+.+..|..| +.|+++.|+.+....+|++++|.+.+ +.+ .+ +...+.+.++..+++.++.+++.
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lp  495 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLP  495 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCc
Confidence            5555566777788899998 88999999999999999999999999 433 33 55677777777777666555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=5.2e-22  Score=171.53  Aligned_cols=275  Identities=13%  Similarity=0.053  Sum_probs=162.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      +...+++.|++|+++|++++++...+.++|..+++.+++.+.++++||+.|++..+ .++..+......||+++.+++.+
T Consensus       127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~-~~~~~~~~~~~~p~~~~~~~~~~  205 (496)
T PRK03893        127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL-PIIFALWLRKNLPEAEDWKEKHA  205 (496)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHHHHHHhCCCchhhhhhcc
Confidence            45667899999999999999999999999999999999999999999999987433 33333333333444332111000


Q ss_pred             hH-HHHHHHhcCcccccCCCCcc--------hHHhh----------------------------c---CccHHHHHHHHH
Q 022127           82 KS-ELRLIQAGKSDSVKKRNPPS--------LRHLL----------------------------S---KLPSWTVIIANI  121 (302)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~----------------------------~---~~~~~~~~~~~~  121 (302)
                      ++ +.+...+.....+++.....        ....+                            +   .+.........+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (496)
T PRK03893        206 GKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVL  285 (496)
T ss_pred             ccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            00 00000000000000000000        00000                            0   000001111111


Q ss_pred             hhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHH
Q 022127          122 TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL  201 (302)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (302)
                      ......+....++|.|+++.+|+++.+.+.+.+...++..++.++.|+++||+++|+..         ..+..+..+..+
T Consensus       286 ~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~---------~~~~~~~~~~~~  356 (496)
T PRK03893        286 FAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY---------VCSLLISQLLII  356 (496)
T ss_pred             HHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---------HHHHHHHHHHHH
Confidence            11111123457899999877999999999999999999999999999999999876321         123222222222


Q ss_pred             Hhhcc--cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Q 022127          202 CLNYA--KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFL  278 (302)
Q Consensus       202 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~  278 (302)
                      .....  .+.+.......+..+......+.......+..| +++++++|+.+...++|+.++|.+.|.+.|+.| +...+
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~  435 (496)
T PRK03893        357 PVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTAL  435 (496)
T ss_pred             HHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHH
Confidence            22222  222222222222222222223445566778777 789999999999999999999999999999987 77776


Q ss_pred             HHHHHHHHH
Q 022127          279 TVTAGLYFV  287 (302)
Q Consensus       279 ~~~~~~~~~  287 (302)
                      ...+....+
T Consensus       436 ~~~~~~~~~  444 (496)
T PRK03893        436 ASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHH
Confidence            555444333

>TIGR00896 CynX cyanate transporter

Probab=99.89  E-value=1.5e-21  Score=161.47  Aligned_cols=243  Identities=15%  Similarity=0.089  Sum_probs=168.1

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      ....++.|++| ++|++++++.+.+.++|..+++.+++.+.++.  +||+.|...+++.++...   ..+|+.+++++..
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~  182 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQVRRRVAAN  182 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCC
Confidence            34567788886 68999999999999999999999999888765  399998876665443322   2234332211100


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      +                +..+...++.+|+|.++...+..++.....+....++|.|+++ .|.|+.+.+...+...++.
T Consensus       183 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~  245 (355)
T TIGR00896       183 Q----------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQ  245 (355)
T ss_pred             C----------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence            0                0011235677889998887777777777788888999999987 7999999999999999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh-hcc
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE-IAP  239 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p  239 (302)
                      +++++..|++.||+++|+       +.. ..+..+..++...+...++..... ...+.+.+.+...+.......+ ..+
T Consensus       246 i~~~~~~g~l~dr~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~  316 (355)
T TIGR00896       246 AASALLIPALARRVKDQR-------GIV-AVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQ  316 (355)
T ss_pred             HHHHHhHHHHHhhhccch-------HHH-HHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccC
Confidence            999999999999996542       111 233333333333333333222211 2333444455555555454443 333


Q ss_pred             -chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Q 022127          240 -DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  275 (302)
Q Consensus       240 -~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~  275 (302)
                       +++++..++.+...+++.+++|.+.|.+.|+.|+|.
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       317 AAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence             667899999999999999999999999999988764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.4e-21  Score=150.15  Aligned_cols=264  Identities=17%  Similarity=0.142  Sum_probs=196.5

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS   83 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   83 (302)
                      .+++.+.||+ +-+..+|+++...++|..+++.+...+.++. |||......+.++++..+.++...   .+++ ..+  
T Consensus       121 PslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~---~r~~-~~~--  193 (395)
T COG2807         121 PSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA---LREQ-AAS--  193 (395)
T ss_pred             hHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc---cccc-ccc--
Confidence            4667888875 4699999999999999999999999998887 799999999999988776655421   1110 000  


Q ss_pred             HHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhh
Q 022127           84 ELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVS  163 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~  163 (302)
                                   .+.+..+..+++|||.-|.+.+.+.+++..+|....|+|.++.| .|+|++++|.+.+...+.....
T Consensus       194 -------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~  259 (395)
T COG2807         194 -------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPT  259 (395)
T ss_pred             -------------cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHH
Confidence                         00112234568999999999999999999999999999999999 7999999999999999999999


Q ss_pred             hhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc--cch
Q 022127          164 GYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA--PDC  241 (302)
Q Consensus       164 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~  241 (302)
                      ++....+.+|..+++.       .. .....+..++.+.+.+.+....... ..+.+.+.+..++.......+-.  |++
T Consensus       260 ~ll~P~la~R~~n~r~-------~~-~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~  330 (395)
T COG2807         260 ALLIPLLARRSKNQRP-------LV-VLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAI  330 (395)
T ss_pred             HHHHHHHHHHhcccch-------HH-HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHH
Confidence            9999999999665432       22 2333333334433333332111111 24444445555666555555433  477


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          242 AGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       242 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      .+.-+|+.+.++++-.+.||.+.|++.|.+|+|+..+.......++..+.-+...|+
T Consensus       331 Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         331 AAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRN  387 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence            899999999999999999999999999999999999988887777766655555444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=1.7e-20  Score=156.65  Aligned_cols=257  Identities=12%  Similarity=0.039  Sum_probs=168.4

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+.+.|..++++|+++++..+.+.++|..+|+.+++.+.+...|+..+. .+.......... + .+.++++++   
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~---  186 (381)
T PRK03633        113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAILPLL-F-TRILNQQAE---  186 (381)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHHHHHH-H-hcccCCCCC---
Confidence            3445667788899999999999999999999999999999876644443333 232222222121 1 222221110   


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      + +               +..+.++.+|+|.++......+...........++|.|+++ .|.++.+.+...+...++.+
T Consensus       187 ~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~  249 (381)
T PRK03633        187 N-H---------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGI  249 (381)
T ss_pred             C-C---------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence            0 0               01245677888887765554444445555667789999987 69999999999899899999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D  240 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  240 (302)
                      ++++..|++.||+++|+..         ..+.....++.....  ..... .....+.+.......+.......|..| +
T Consensus       250 ~~~~~~g~l~dr~~~~~~l---------~~~~~~~~~~~~~~~--~~~~~-~~~~~l~g~~~~~~~p~~~~~~~~~~~~~  317 (381)
T PRK03633        250 LGQWPIGRLADRFGRLLVL---------RVQVFVVILGSIAML--SQAAM-APALFILGAAGFTLYPVAMAWACEKVEHH  317 (381)
T ss_pred             HHHhhhHHHHHHcCcHHHH---------HHHHHHHHHHHHHHh--hhHHH-HHHHHHHHHHHHhHHHHHHHHHHccCCHH
Confidence            9999999999999876321         123333233222222  11111 112222222233345666666667666 6


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          241 CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       241 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +++...+..+...++|++++|.+.|++.|+.| +...|.+.+.+.++..+..+.
T Consensus       318 ~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        318 ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence            77788888888899999999999999999987 888888887777766544433

>PRK10133 L-fucose transporter; Provisional

Probab=99.89  E-value=1.4e-20  Score=159.16  Aligned_cols=265  Identities=11%  Similarity=0.061  Sum_probs=179.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh------------------h--------cCCchHHHHH
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------------------T--------IGISGPFILF   55 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------------------~--------~gwr~~f~~~   55 (302)
                      ++.++++.|+.|+++|.+.+++.+....+|..+++.+++.+..                  .        .+||++|+..
T Consensus       136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~  215 (438)
T PRK10133        136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_pred             hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHH
Confidence            4567788888777777778999999999999999999876541                  0        2566666543


Q ss_pred             HHHHH-HHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhh
Q 022127           56 SSLGL-LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  134 (302)
Q Consensus        56 ~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
                      ..+.. +..+......||.+++++   + +          +++++...+.++++++|.++...+..++..........|.
T Consensus       216 ~~v~~~~~~~~~~~~~p~~~~~~~---~-~----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~  281 (438)
T PRK10133        216 VAIVLLVALLIMLTKFPALQSDNH---S-D----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL  281 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccc---c-c----------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332 322222222333221110   0 0          0000112246788999998887777777777777778889


Q ss_pred             hHHH-HHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHH
Q 022127          135 PIYF-NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAA  213 (302)
Q Consensus       135 ~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (302)
                      +.|+ ++.+|.++.+++.......++..++++..+++.||+++|+.        + ..+..+....+......++. ...
T Consensus       282 ~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--------l-~~~~~~~~~~~~~~~~~~~~-~~~  351 (438)
T PRK10133        282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--------L-AAYALIAMALCLISAFAGGH-VGL  351 (438)
T ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--------H-HHHHHHHHHHHHHHHHcCCh-HHH
Confidence            9885 56689999999999999999999999999999999997632        2 12232322333322233332 224


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022127          214 VLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  291 (302)
                      ..+.+.+++.+..+|..++...+..|++.+++.++.. ...+|+.++|.+.|.+.|..|+.+..|++...+.+.....
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            4455667778888899999888888887888888886 4557899999999999998764677777655555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=3.6e-21  Score=161.48  Aligned_cols=258  Identities=14%  Similarity=0.071  Sum_probs=172.2

Q ss_pred             chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCccc
Q 022127           16 ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS   95 (302)
Q Consensus        16 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   95 (302)
                      ++++..+......++|.+++|.+++.+.+ .+||..|++.+.+.++..++.+...||+|++++     +++    ..+++
T Consensus       130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~  199 (396)
T TIGR00882       130 NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-----VAN----ALGAN  199 (396)
T ss_pred             hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-----hhc----ccccc
Confidence            34557788888899999999999998764 599999999888888766555544444332110     000    00001


Q ss_pred             ccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh---ccchhhhhHHhhHHHHHHHhhhhhhhcccc
Q 022127           96 VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVNLKQAAWFSAVPWGTMAVSGYMAGKASD  172 (302)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  172 (302)
                      +++++..+.++++|||+++...+..+...........+.|.|+++.+   +.+....+...+...+...++.+..|++.|
T Consensus       200 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~  279 (396)
T TIGR00882       200 ASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN  279 (396)
T ss_pred             cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122335788999999887777666666566666677888888754   455567788888888889999999999999


Q ss_pred             hhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHH-HH
Q 022127          173 SLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGI-AN  250 (302)
Q Consensus       173 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~-~~  250 (302)
                      |+++|+..         .++..+.++........++.+.......+.+...............+..| +.+++..+. .+
T Consensus       280 r~g~~~~l---------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~  350 (396)
T TIGR00882       280 RIGAKNAL---------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQ  350 (396)
T ss_pred             HhccchhH---------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHH
Confidence            99987432         24444444444444445555544444333333332222223333455455 566776665 67


Q ss_pred             HHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          251 SAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       251 ~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      ....+|+.++|.+.|++.|..| |+.+|.+.+++.++..+...
T Consensus       351 ~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       351 FAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999887 99999998888877766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.88  E-value=6.5e-21  Score=180.06  Aligned_cols=269  Identities=19%  Similarity=0.123  Sum_probs=185.2

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--------c-CCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------I-GISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~-gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      |+..+++.|++|+++|++++|+...+.++|.++|+.+++++.+.        + +|++.+.+..+...+..++..+.+||
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK  201 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence            66788999999999999999999999999999999999999876        2 34444444444333333344444666


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchh-hhhH
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK-QAAW  151 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~  151 (302)
                      .|+..+...+.+..        ...+.....++.++++|.++...+..++..........++|.|+++.+|.+.. +.++
T Consensus       202 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~  273 (1146)
T PRK08633        202 VPAAAPEVFDKKKY--------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQY  273 (1146)
T ss_pred             CCCCCccccccccc--------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHH
Confidence            65432211100000        00000122466788889888887777777777777888999999998999998 8999


Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  231 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (302)
                      +.+...++.+++.++.|++.||.++++..         .++.++.+++.+.+....+.+...+...+.+++.+...+...
T Consensus       274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  344 (1146)
T PRK08633        274 LLAASAIGIGIGSLLAGRLSGRHIELGLV---------PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLN  344 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceEccch---------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999876432         133333344444444444554444555555555666666777


Q ss_pred             hHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q 022127          232 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       232 ~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  287 (302)
                      +...+..| +.||+++|+.+.+.+++..+++.+.+.+.....++...+.+.+.+.++
T Consensus       345 ~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        345 ALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            88888777 889999999999999999888887776654211244455554444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.88  E-value=1e-20  Score=160.96  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=170.7

Q ss_pred             hhhhhccc-CccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-------hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022127            5 STLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSLGLLWLSTWTSKVTNDPCN   76 (302)
Q Consensus         5 ~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~   76 (302)
                      .++..|.. +++||++..++.+.+..+|..+++.+.+.+..       ..+||+.+.+.++++++..++.++..||++++
T Consensus       121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~  200 (437)
T TIGR00792       121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE  200 (437)
T ss_pred             hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC
Confidence            45667776 46899999999999999998888777666653       45899999999988888777766667765432


Q ss_pred             CCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           77 SPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      .+.. ++            ++.+....++++++||+++...+..++..........+.+.|.++..+ ++.+.+.+....
T Consensus       201 ~~~~-~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  266 (437)
T TIGR00792       201 IPKN-IE------------KKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIA  266 (437)
T ss_pred             CCcc-cc------------cCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHH
Confidence            1110 00            000112246788899999988888888777777766666666666555 556667777777


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-cchHHHHHHHHHHHHHhhhhhhhhhhHHh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQ  235 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
                      .++.+++.++.++++||+|+|+.        . ..+..+..++....... ++.+.......+.+++.+...+..++...
T Consensus       267 ~i~~ii~~~~~~~l~~r~g~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (437)
T TIGR00792       267 IVAGLIGVLLFPRLVKKFGRKIL--------F-AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVA  337 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHH--------H-HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999997632        1 23333333333333332 23334444445555555666666677766


Q ss_pred             hhcc--------chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          236 EIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       236 ~~~p--------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      |..+        +++|+..|+.+....++..+++.+.|.+.|..|
T Consensus       338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6542        457999999999999999999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=9.5e-20  Score=151.44  Aligned_cols=284  Identities=13%  Similarity=0.066  Sum_probs=192.4

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHH-HH-HhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCC----C
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTP-IM-LSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN----S   77 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~l-~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~----~   77 (302)
                      ..-++.|..|++.||........+..+|..++..++. .+ -+...|++.+....+++++..+.. .++||+|+.    +
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k  215 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKK  215 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHc
Confidence            4567899999999999999999999999999977763 33 345579999999888777765544 458999972    1


Q ss_pred             CCCChHH---------------HHHHHhcCc-ccccCCCCcchHHhhcCccHHH-----HHHHHHhhhHHHHHHHhhhhH
Q 022127           78 PFVSKSE---------------LRLIQAGKS-DSVKKRNPPSLRHLLSKLPSWT-----VIIANITNNWGYFVLLSWMPI  136 (302)
Q Consensus        78 ~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  136 (302)
                      ++.++.+               .+...++.+ ++..+++..+++++++||....     +.+....+..+.+....|...
T Consensus       216 ~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~  295 (485)
T KOG0569|consen  216 GDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTS  295 (485)
T ss_pred             CCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHH
Confidence            1111111               011111111 1122235667899999865432     333333444455556677777


Q ss_pred             HHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc----cc-c-hH
Q 022127          137 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY----AK-S-PA  210 (302)
Q Consensus       137 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-~~  210 (302)
                      ++++ .|++..++.+.....+..+.+.++++.++.||.|||....         .+..++.+..+.+..    .. . .+
T Consensus       296 i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll---------~~~~~~~~~~~~~~~~~~l~~~~~~~  365 (485)
T KOG0569|consen  296 IFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLL---------ISLSLMAVALLLMSIALFLSNSFGSW  365 (485)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            7777 8999999999999999999999999999999999875432         222222222222111    11 1 12


Q ss_pred             H---HHHHHHHHHHHhhhh-hhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHH
Q 022127          211 V---AAVLITIALSLSSFS-QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  285 (302)
Q Consensus       211 ~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~  285 (302)
                      .   .+...++.....+.. .|..+-..+|++| +.|+.+.++......+..++-......+.+..|.  ..|....+.+
T Consensus       366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~  443 (485)
T KOG0569|consen  366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPL  443 (485)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHH
Confidence            1   233334444444444 3445777899998 8899999999999999999999999999998885  6777777777


Q ss_pred             HHHHHHHHhhccCcc
Q 022127          286 FVTTIFWNLYSTGER  300 (302)
Q Consensus       286 ~~~~~~~~~~~~~~~  300 (302)
                      ++..+..+...+|+|
T Consensus       444 ~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  444 AIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHhCcccC
Confidence            777777777777665

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.86  E-value=6.5e-19  Score=148.84  Aligned_cols=278  Identities=15%  Similarity=0.116  Sum_probs=211.4

Q ss_pred             hhhhhcccCccch--------------------------hhHHHHHhhhhhhHHHHHHHHHHHHHhh--------cCCch
Q 022127            5 STLTSRWFPSHER--------------------------ASAIGICMGGFHLGNVVGLLLTPIMLST--------IGISG   50 (302)
Q Consensus         5 ~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~gwr~   50 (302)
                      .+++.|..+++++                          ++..+.-.....+|..+...+.-.+...        .+-|.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            4677788887777                          9999999999999999888877665432        23588


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHH--HHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHH
Q 022127           51 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE--LRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYF  128 (302)
Q Consensus        51 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (302)
                      .+.+.++--++..+..++.+||.|+.++..+..+  +...++         -....+++.|+|+....++.+++..-+..
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~---------l~~t~k~~~~~~~~~~fLia~~l~~dg~~  298 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR---------LWRTFKEIRKLRQLFLFLIAYFLYSDGVN  298 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH---------HHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888876322211111  111111         12246777788999999999999999999


Q ss_pred             HHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh-HHHHHHhh---
Q 022127          129 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP-GVSLLCLN---  204 (302)
Q Consensus       129 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---  204 (302)
                      ++......|.++++|++..+...+.....+.+++|+++.|++.||+|.|..      +.+ ..+.... .+....+.   
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l-~~~l~~~~~i~~~g~~G~~  371 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTL-LISLILWIIIPLYGLFGFW  371 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHH-HHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998721      111 1222111 22222111   


Q ss_pred             ----cccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Q 022127          205 ----YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  279 (302)
Q Consensus       205 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  279 (302)
                          ..++.+...+...+.+.+.+...+...++..++.| ++.+..+|++.......+.+||.+.|.+.|.+|+.+..+.
T Consensus       372 ~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  372 PSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             hcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence                13455556666666777777778888888999888 7889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccC
Q 022127          280 VTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~  298 (302)
                      ...++.+++.++......+
T Consensus       452 ~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  452 FLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHHhhccch
Confidence            9999999988877655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.86  E-value=2.6e-19  Score=150.81  Aligned_cols=246  Identities=8%  Similarity=0.019  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhh
Q 022127           29 HLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLL  108 (302)
Q Consensus        29 ~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
                      .+|.++++.+++.+.....|+ +|++.+++.++..+. .+.+||+|+++++.+.+.++            ..+.+.++++
T Consensus       140 ~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~------------~~~~~~~~~~  205 (418)
T TIGR00889       140 TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKV------------MLGLDAFILF  205 (418)
T ss_pred             hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHH------------HhhhhHHHHh
Confidence            478888898888774333454 455666666655543 44567765322211110000            0112356788


Q ss_pred             cCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccch--------hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCc
Q 022127          109 SKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL--------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYS  180 (302)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  180 (302)
                      |+|+++...+..++..........+.|.|+++ .|.++        ...+...+...+..+++.+..|++.||+|+|+. 
T Consensus       206 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-  283 (418)
T TIGR00889       206 KNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-  283 (418)
T ss_pred             cCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-
Confidence            99998888887777766666666788888877 55443        566888888899999999999999999997532 


Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHhhccc-ch---HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHH-HHHH
Q 022127          181 LTLVRKIMQSIGFIGPGVSLLCLNYAK-SP---AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIAN-SAGT  254 (302)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~-~~~~  254 (302)
                              +..+.+...+......... +.   +.......+.+...+...+.....+.|..| ++|+++.|+.+ ....
T Consensus       284 --------l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~  355 (418)
T TIGR00889       284 --------MLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG  355 (418)
T ss_pred             --------HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence                    2344444444443333322 11   222333344444445555666677788888 88999999997 5678


Q ss_pred             HHHHHHHHHhhhhhcccc-----chhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          255 LAAIISTIGTGYFVQWLG-----SFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       255 ~g~~i~~~i~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +|.++||.+.|.+.|+.|     +|+..|.+.+++.+++.++..++.++
T Consensus       356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999865     38889988888877777666655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.85  E-value=5.7e-19  Score=148.17  Aligned_cols=259  Identities=10%  Similarity=0.025  Sum_probs=173.9

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--------------------------cCCchHHHHH
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------------------------IGISGPFILF   55 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------------------------~gwr~~f~~~   55 (302)
                      ++.+.++.+..|+++|++.+++.+...++|..+++.+++.+...                          .+||++|.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~  192 (410)
T TIGR00885       113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII  192 (410)
T ss_pred             hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999877432                          4699999998


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhh
Q 022127           56 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMP  135 (302)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (302)
                      +++.++..+...+ . +.|+.+++  ++++            .+...+.++++|+|+++...+..++..........+++
T Consensus       193 a~~~~~~~~~~~~-~-~~p~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~  256 (410)
T TIGR00885       193 GAVVLAVALLIML-T-KMPALNHS--DAKQ------------ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFII  256 (410)
T ss_pred             HHHHHHHHHHHHH-h-cCCCCCcc--cccc------------ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877765544332 2 22221110  0000            00112456788999999888888888777778889999


Q ss_pred             HHHHHhh-ccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHH
Q 022127          136 IYFNTVF-NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAV  214 (302)
Q Consensus       136 ~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (302)
                      .|.++.. +.+...++...+.......+|+++++++.||+++|        +.+ .+......+...+....++... ..
T Consensus       257 ~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~--------~~l-~i~~~~~~~~~ll~~~~~~~~~-~~  326 (410)
T TIGR00885       257 QYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH--------KVL-MAYAIIGMALCLGSIFAGGHVG-LY  326 (410)
T ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHH-HHHHHHHHHHHHHHHHcCChHH-HH
Confidence            9987632 44444455566666678899999999999999865        222 2334444444444444444333 34


Q ss_pred             HHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccc-----cchhHHHHHHHHHHHH
Q 022127          215 LITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWL-----GSFQAFLTVTAGLYFV  287 (302)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-----g~~~~~~~~~~~~~~~  287 (302)
                      .+.+.+++.+..+|..++...+..+++..++.+...+. .+|+++.|.+.|.+.|+.     |+++..|++...+.+.
T Consensus       327 ~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       327 CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            44445566666678888888887776554444443333 399999999999999954     4577777765444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.82  E-value=6.2e-18  Score=144.44  Aligned_cols=292  Identities=11%  Similarity=0.047  Sum_probs=181.6

Q ss_pred             chhhhhhhcccCccc---hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhc----CCC
Q 022127            2 PAMSTLTSRWFPSHE---RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT----NDP   74 (302)
Q Consensus         2 p~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~----~~p   74 (302)
                      |+..++++|++|+++   |++++++.+.+.++|.++||.+++++.++.|||+.|.+.++..++. ++.+...+    +.|
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~~~~~~~~~~~  199 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFFAGRHMLRDIG  199 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHcccccccCC
Confidence            667789999998764   8889999999999999999999999999999999999977544443 33333333    222


Q ss_pred             CCCCCCChHHHHHHHhc-----------------Ccccc-------------------cCCCCcchHHhhcCccHHHHHH
Q 022127           75 CNSPFVSKSELRLIQAG-----------------KSDSV-------------------KKRNPPSLRHLLSKLPSWTVII  118 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-----------------~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  118 (302)
                      +++++.++++++.....                 .+...                   ..+++....+-.|.+.+..+.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  279 (475)
T TIGR00924       200 SVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFL  279 (475)
T ss_pred             CCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHH
Confidence            21111111111100000                 00000                   0000001111112223344444


Q ss_pred             HHHhhhHHHHHHHhhhhHHHHHhhccchh----hhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          119 ANITNNWGYFVLLSWMPIYFNTVFNVNLK----QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      ...+....+....+.++.+.++..+.+..    ..+.+.+...+..++..++..++..|.++|+.......|.  .++++
T Consensus       280 ~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~--~~G~~  357 (475)
T TIGR00924       280 EAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF--TLGML  357 (475)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH--HHHHH
Confidence            44455555555666678777765444322    2567777778887777777666555666542211111222  35555


Q ss_pred             hhHHHHHHhhc---------ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          195 GPGVSLLCLNY---------AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       195 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      +.+++......         ..+.++.+....+...+.....+.......+..| +.||+.+|+......+|..+++.+.
T Consensus       358 l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~  437 (475)
T TIGR00924       358 FCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA  437 (475)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555544432         3466666777777777888888999999999988 7899999999999999999999998


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          265 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       265 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ....+..+ +...+...++..++..++.++..+
T Consensus       438 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       438 TFGAVPQG-VTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHhcccc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88776654 777777777766666655544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.7e-19  Score=142.69  Aligned_cols=269  Identities=20%  Similarity=0.145  Sum_probs=199.9

Q ss_pred             chhhhhhhcccCcc-chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSH-ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      .+..++++|.+|++ ||++++|+...+.++|..+||+.||.+.+..|.+.+|.+.+++.++-..+.++.++++..+.+  
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--  255 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--  255 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--
Confidence            35678999999975 589999999999999999999999999999999999999999999988777776644322211  


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      +                .++..++++++++|.++.........+.+.......++.+..+.+..+.-+.|.......+..
T Consensus       256 ~----------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y  319 (464)
T KOG3764|consen  256 S----------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSY  319 (464)
T ss_pred             c----------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccch
Confidence            0                112346889999999999888888888888788888899888878855558899988999999


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc--
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIA--  238 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (302)
                      .++..+.|.+.||+++.       |......+++..+......++.++....++..+...+..+...........++.  
T Consensus       320 ~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~  392 (464)
T KOG3764|consen  320 AIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDP  392 (464)
T ss_pred             hccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcch
Confidence            99999999999999865       322323455555555555555555544443333333333333333333333322  


Q ss_pred             -c-c---hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          239 -P-D---CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       239 -p-~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                       . +   ..|..+++......+|.++||.++|.+.+..| +.+...+.+...++-.-++.+++
T Consensus       393 rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  393 RHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             hhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence             2 2   46899999999999999999999999999998 88888887777776665554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.82  E-value=2.3e-18  Score=151.14  Aligned_cols=176  Identities=16%  Similarity=0.213  Sum_probs=131.5

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc----------------------CCchHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI----------------------GISGPFILFSSL   58 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------gwr~~f~~~~~~   58 (302)
                      +|...+++.|++|+++|++++++...+..+|..+|+++++++.+.+                      +||..|++.+++
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l  269 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV  269 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            3667899999999999999999999999999999999999988643                      277789888888


Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCC--hHHHHHHHhcCcccc------cCCCCcchHHhhcCccHHHHHHHHHhhhHHHHH
Q 022127           59 GLLWLSTWTSKVTND-PCNSPFVS--KSELRLIQAGKSDSV------KKRNPPSLRHLLSKLPSWTVIIANITNNWGYFV  129 (302)
Q Consensus        59 ~~~~~~~~~~~~~~~-p~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (302)
                      .++..+..++ +|++ |++.++.+  ..+++..++..++++      .++.+...+++++||.++...+..++.....+.
T Consensus       270 ~~l~~v~l~~-~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~  348 (633)
T TIGR00805       270 ALLTSIPFFF-FPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG  348 (633)
T ss_pred             HHHHHHHHHh-CccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            8877665544 4443 43221111  111110000000000      001123467899999999999999999999999


Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHH-HHHhhhhhhhcccchhhcc
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWG-TMAVSGYMAGKASDSLIKA  177 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~  177 (302)
                      +..|+|.|+++++|+++.+++.+.....+ +.+++.+++|+++||++.+
T Consensus       349 ~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       349 YITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            99999999999999999999999887766 5688999999999999865

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.81  E-value=2.3e-20  Score=150.51  Aligned_cols=268  Identities=15%  Similarity=0.082  Sum_probs=181.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |.++++++|.+|.++|++++++++.+.++|..+|.+.+..+.+..+ |||.|+..+++++++.++.+++.+|+++..+++
T Consensus       140 ~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  140 PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            7889999999999999999999999999999999999999988766 999999999999999988888776654422211


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh---hccchhhhhHHhhHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV---FNVNLKQAAWFSAVPW  157 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~  157 (302)
                      .+.+.+      .........++.+.+.|+|.+....+......+...++..|.|.+....   .|.+..+..++..+..
T Consensus       220 ~~~~~~------~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~  293 (493)
T KOG1330|consen  220 VDGENK------MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTC  293 (493)
T ss_pred             cccCCc------CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHH
Confidence            111100      0011112233556667778777777777777777777777777776542   3556666677778889


Q ss_pred             HHHHhhhhhhhcccchhhccCCc--hhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhhH
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYS--LTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLN  233 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
                      .++.+|.+.+|.++||+.++...  ...........+...+...+.+.....  +.+..++++.++........+....+
T Consensus       294 ~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i  373 (493)
T KOG1330|consen  294 AGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPI  373 (493)
T ss_pred             hhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccce
Confidence            99999999999999996553322  111223333334444444443333332  23334444444444444445555555


Q ss_pred             Hhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhccccchh
Q 022127          234 IQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQ  275 (302)
Q Consensus       234 ~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~  275 (302)
                      ..++.| ++|.++.++-..+..+ |.+-+|++.|.+.|+.-+++
T Consensus       374 ~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  374 FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            566555 9999999998877775 55666779999988754344

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.1e-17  Score=133.19  Aligned_cols=261  Identities=13%  Similarity=0.115  Sum_probs=188.2

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-------------------cCCchHHHHHHHHHHHHH
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------------------IGISGPFILFSSLGLLWL   63 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------------------~gwr~~f~~~~~~~~~~~   63 (302)
                      +++.+++...|+++..+.+.+.+...++|.+++|++++.+..+                   -.||++|...+...+++.
T Consensus       124 aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~  203 (422)
T COG0738         124 AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLA  203 (422)
T ss_pred             ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5678899999998889999999999999999999999988762                   258999998877766655


Q ss_pred             HHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhc
Q 022127           64 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  143 (302)
Q Consensus        64 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (302)
                      +.....  +.|+.++..++ +            .+.+.....+++|+|+++...+..|++-........|++.|+.+..|
T Consensus       204 v~~~~~--k~p~~~~~~~~-~------------~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g  268 (422)
T COG0738         204 VLILLS--KLPDLQVAAPS-L------------GASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLG  268 (422)
T ss_pred             HHHHhc--cCCcCCccccc-c------------cccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence            544332  22222111100 0            00111146789999999999999999999999999999999999889


Q ss_pred             cchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHh
Q 022127          144 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  223 (302)
Q Consensus       144 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
                      .+..+++...+....+.++|++++.++..|+...        |.+. ...++..+.++.....++.+ .+....+.+.+.
T Consensus       269 ~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~La-f~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~  338 (422)
T COG0738         269 LNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KYLA-FYALIAILLLLAVALIGGVV-ALYALFLIGLFN  338 (422)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHHH-HHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHh
Confidence            9999999999999999999999999998888754        3332 33333333344444455533 344445556677


Q ss_pred             hhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q 022127          224 SFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTI  290 (302)
Q Consensus       224 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  290 (302)
                      +..+|..++...+..|++...+.++ -....+|+++.|++.|++.|+.| ....+......+.+-.+
T Consensus       339 simfPTIfslal~~l~~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV~  403 (422)
T COG0738         339 SIMFPTIFSLALKNLGEHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYVL  403 (422)
T ss_pred             HHHHHHHHHHHHhccCcccccccee-eeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence            8888998888888777555444444 45567899999999999999987 44444433344433333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.79  E-value=6e-17  Score=138.53  Aligned_cols=288  Identities=14%  Similarity=0.115  Sum_probs=170.8

Q ss_pred             chhhhhhhcccCcc--chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC-
Q 022127            2 PAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP-   78 (302)
Q Consensus         2 p~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~-   78 (302)
                      |...+++.|++|++  +|++++++++.+.++|..+||.+++++.++.|||+.|++.++ +++..++.+...++..++.+ 
T Consensus       124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~  202 (489)
T PRK10207        124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGS  202 (489)
T ss_pred             CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCC
Confidence            67789999999877  457899999999999999999999999999999999999654 44444444433332221110 


Q ss_pred             ---CCChHHHHHH----------------HhcCcccc---------------cCCCCcchHHhhcCccHHHHHHH--HHh
Q 022127           79 ---FVSKSELRLI----------------QAGKSDSV---------------KKRNPPSLRHLLSKLPSWTVIIA--NIT  122 (302)
Q Consensus        79 ---~~~~~~~~~~----------------~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--~~~  122 (302)
                         +.+.+.+...                .+......               .++.+  ..+.+|+|.+....+.  ...
T Consensus       203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~--~~~~~r~r~~~~~~l~~~~~~  280 (489)
T PRK10207        203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK--LDKTGRNKMFVAFVLMLEAVV  280 (489)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHH
Confidence               0000000000                00000000               00000  1145566655443322  333


Q ss_pred             hhHHHHHHHhhhhHHHHHhhccch----hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHH
Q 022127          123 NNWGYFVLLSWMPIYFNTVFNVNL----KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV  198 (302)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~g~s~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  198 (302)
                      ....+......++.+.++..+.+.    .....+.+...+..++.+++.+++.||+++|+.......|..  +++++.++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~--~G~~l~~~  358 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFT--LGMFLCSL  358 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH--HHHHHHHH
Confidence            333444444777778775333221    122334445556676788888999999998864222223333  33333333


Q ss_pred             HHHH-------hhcc---cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          199 SLLC-------LNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       199 ~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      ++..       ....   .+.+..+....+.+.+..+..+.....+.+..| +.++.++|+.+...++|+.++..+....
T Consensus       359 ~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        359 GFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3321       1111   234555556666677777778888888888777 8899999999999999999999888655


Q ss_pred             hc------c---ccchhHHHHHHHHHHHHHHHHHHh
Q 022127          268 VQ------W---LGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       268 ~~------~---~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ..      .   .+.+...|...++..++..+++++
T Consensus       439 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        439 AVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             ccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            21      0   112566777777666655555444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.78  E-value=3.6e-17  Score=138.63  Aligned_cols=245  Identities=17%  Similarity=0.188  Sum_probs=183.4

Q ss_pred             hhhhhhcccC-ccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-------CCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022127            4 MSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFSSLGLLWLSTWTSKVTNDPC   75 (302)
Q Consensus         4 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~   75 (302)
                      -.++..|..+ ++||.+..+....+..+|..+...+.+.+.+..       +|++...+.+++.++..++..+..||+++
T Consensus       124 ~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~  203 (428)
T PF13347_consen  124 YNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV  203 (428)
T ss_pred             hhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc
Confidence            3567888887 478999999999999999987777777665432       59999999888888877777777777221


Q ss_pred             CCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhH
Q 022127           76 NSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  155 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  155 (302)
                      +.++  +            +++.+.++..+++++||+++.+....++............+.|.++..|.+ ...+.....
T Consensus       204 ~~~~--~------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~  268 (428)
T PF13347_consen  204 EVTE--Q------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLI  268 (428)
T ss_pred             cccc--c------------ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHH
Confidence            1110  0            011123446888999999999999999988888888888888888888866 566777778


Q ss_pred             HHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc--cchHHHHHHHHHHHHHhhhhhhhhhhH
Q 022127          156 PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA--KSPAVAAVLITIALSLSSFSQAGYLLN  233 (302)
Q Consensus       156 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
                      ..+...++.++.++++||+|+|+..         ..+..+..++.......  ++.+...+...+.+.+.+......+++
T Consensus       269 ~~~~~~v~~~~~~~l~~r~gk~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  269 FFVASIVGSPLWGRLSKRFGKKKVY---------IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHccceeeh---------hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            8899999999999999999988643         24444444444444333  366666666677777777777777888


Q ss_pred             Hhhhcc--------chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          234 IQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       234 ~~~~~p--------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ..|..+        ++.|...|+.+....++..+++.+.+.+.+..|
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            777665        236899999999999999999999999876543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=3e-17  Score=128.83  Aligned_cols=285  Identities=15%  Similarity=0.082  Sum_probs=184.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...++-.|..|..+|...+-.. ..+.+|.+....+...+..++||||.....+.+..+.+ ...+.+||+|+-.-...
T Consensus       184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf~~~~G  261 (528)
T KOG0253|consen  184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRFYLAKG  261 (528)
T ss_pred             cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcchhhhcC
Confidence            55566777888888888877666 99999999999999999999999999888775554444 44556899987321111


Q ss_pred             hHHHH-----------------------------HHHhcCccc---ccCCCCcchHHhhcC---ccHHHHHHHHHhhhHH
Q 022127           82 KSELR-----------------------------LIQAGKSDS---VKKRNPPSLRHLLSK---LPSWTVIIANITNNWG  126 (302)
Q Consensus        82 ~~~~~-----------------------------~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  126 (302)
                      ++++.                             +.+.+.++.   ..++.+.+..+++..   +....+...+|...+.
T Consensus       262 ~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs  341 (528)
T KOG0253|consen  262 DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS  341 (528)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH
Confidence            11100                             000000000   112223334444432   2334555555666666


Q ss_pred             HHHHHhhhhHHHHHhh-------------------ccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHH
Q 022127          127 YFVLLSWMPIYFNTVF-------------------NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI  187 (302)
Q Consensus       127 ~~~~~~~~~~~~~~~~-------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  187 (302)
                      +++.........+.+.                   ..+..+.-.=.....+....|.++.++++||+|||+.        
T Consensus       342 yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT--------  413 (528)
T KOG0253|consen  342 YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT--------  413 (528)
T ss_pred             HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH--------
Confidence            6665544444443311                   0111111112234567888999999999999998743        


Q ss_pred             HHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 022127          188 MQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGY  266 (302)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~  266 (302)
                       +..++++.++..+.+....+......+.+.+-++....+...+.+..|++| ..|+++.|.......+|+++.|.++ .
T Consensus       414 -Mal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~  491 (528)
T KOG0253|consen  414 -MALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-M  491 (528)
T ss_pred             -HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-H
Confidence             235666666666666555554445556666667777778889999999999 8899999999999999999999998 3


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 022127          267 FVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGER  300 (302)
Q Consensus       267 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (302)
                      ..+.  +...+..+.+.+++++.+...+++-++|
T Consensus       492 ~~e~--s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  492 RAEL--STSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             Hhcc--ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            3333  2445667777777888877777766554

>PRK09669 putative symporter YagG; Provisional

Probab=99.77  E-value=2.6e-16  Score=134.08  Aligned_cols=242  Identities=11%  Similarity=0.036  Sum_probs=156.0

Q ss_pred             hhhhhccc-CccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-------hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022127            5 STLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSLGLLWLSTWTSKVTNDPCN   76 (302)
Q Consensus         5 ~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~   76 (302)
                      .++.+|+. +++||++..++...+..+|..+++.+...+..       ..+|+..+.+.++++++..+..++..+|++++
T Consensus       131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~  210 (444)
T PRK09669        131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP  210 (444)
T ss_pred             HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC
Confidence            46778887 45889999999999999998888776655443       24688888888887777666565555554322


Q ss_pred             CCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           77 SPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      +++    +            +.+...+.++++|||.++.+....++............+.|.+...+ +++..+......
T Consensus       211 ~~~----~------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~  273 (444)
T PRK09669        211 EVD----N------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTG  273 (444)
T ss_pred             CCc----C------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHH
Confidence            110    0            00112357788999999888877776655555444444444444333 333344455555


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHH-HHHHhhc-ccchHHHHHHHHHHHHHhhhhhhhhhhHH
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYLLNI  234 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
                      .+..+++.++.+++.||+|+|+..       .  .+.....+ ....... .++.+...+...+.+.+.+...+..+++.
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAF-------K--WTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHH-------H--HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788889999999999876321       1  22222221 2212222 23444444445555666666677778888


Q ss_pred             hhhcc--------chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          235 QEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       235 ~~~~p--------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      .|..+        +..|...|..+....+|.++++.+.|.+.+..|
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            77654        225678899999999999999999999988654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.76  E-value=9.4e-17  Score=121.83  Aligned_cols=273  Identities=18%  Similarity=0.221  Sum_probs=174.7

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc------hHHHH---HHHHHHHHHHHHHhhhcCC
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGIS------GPFIL---FSSLGLLWLSTWTSKVTND   73 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr------~~f~~---~~~~~~~~~~~~~~~~~~~   73 (302)
                      +-+++...||..||.+.++|+..+..-+|..+--.+.+++.+..+--      ....+   .+.......+++...+   
T Consensus       156 aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l---  232 (459)
T KOG4686|consen  156 AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL---  232 (459)
T ss_pred             hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            45678899999999999999999999999998888888887654311      11111   1111111111111111   


Q ss_pred             CCCCCCCChHHHHH--HHhcCcccccCCCCcchHHhhc-CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhh
Q 022127           74 PCNSPFVSKSELRL--IQAGKSDSVKKRNPPSLRHLLS-KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  150 (302)
Q Consensus        74 p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  150 (302)
                          ...+++..+.  .++....|..     ...+... .|.+|.+.+..++.+...+.+...-|.++++++|+|+.+++
T Consensus       233 ----g~~D~rAerilh~e~g~~Ge~p-----kLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~  303 (459)
T KOG4686|consen  233 ----GLSDDRAERILHLEEGFLGEEP-----KLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG  303 (459)
T ss_pred             ----hhhhhHHHHHHhhhcCcccCCc-----ccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc
Confidence                0001111111  1111111100     1111111 37899999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-cchHHHHHHHHHHHHHhhhhhhh
Q 022127          151 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      .+.+.....+.+.+++.|.++||.|++-...        ..+.+....+-..+.+. .+++...   ++.+.........
T Consensus       304 ~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv--------~~a~~~tl~~H~~l~Ft~lsPy~~m---~~lGLsysllAcs  372 (459)
T KOG4686|consen  304 NILSTVYGISAVLSPVFGAISDKYGFNLWWV--------ASACILTLLGHSGLFFTFLSPYTSM---TFLGLSYSLLACS  372 (459)
T ss_pred             chhhhhhhhhhhhhhhHHHhHhhhcceehhH--------HHHHHHHHHHhhhHHhhhccHHHHH---HHHhhhHHHHHHH
Confidence            9999999999999999999999999874321        12222222222222222 2444333   2223223333344


Q ss_pred             hhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhH---HHHHHHHHHHHHHHHHHhhccC
Q 022127          230 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQA---FLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       230 ~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      .+..+..+.| ++.|+++|.++.++|+|-++.|.+.|.+.|+-|+|..   .|..+..+++.+..+.+.+.++
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence            6777788888 7789999999999999999999999999998876543   4455555566655555555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.74  E-value=3.9e-16  Score=125.30  Aligned_cols=276  Identities=13%  Similarity=0.061  Sum_probs=203.1

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHH--H----------------hhcCCchHHHHHHHHHHHHHHHH
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM--L----------------STIGISGPFILFSSLGLLWLSTW   66 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~----------------~~~gwr~~f~~~~~~~~~~~~~~   66 (302)
                      .+++.|..++++-++..+.-.....+|..+.-...-..  .                +...-|..+.+.++--++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            46788899999889999888888888888766554221  1                12346778888888777777777


Q ss_pred             HhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccch
Q 022127           67 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  146 (302)
Q Consensus        67 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  146 (302)
                      +...+|.++......+.-++..++         -..+.+++.+++++....+..++..-+..+.......|....+|++.
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g~k~---------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~  287 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNGFKE---------LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSS  287 (438)
T ss_pred             HhcccccccccccchHHHHHHHHH---------HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccH
Confidence            777766654321111111111111         12357888889999999999999999999999999999998899999


Q ss_pred             hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhh
Q 022127          147 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  226 (302)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (302)
                      .+...+.....+..++|+++.|++.||+|.|+...         .++++..+..+...+.......+.+-.+.+...+..
T Consensus       288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~---------~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM---------IGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh---------HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            99999999999999999999999999999885432         333332222222222333333344434445555666


Q ss_pred             hhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          227 QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       227 ~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      ++...++..+..| ++.++..|+++..+...+..||.+.+.+.+.+|+.+..+....++..++.++....+.+
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            6777777888777 88999999999999999999999999999999999999999888888888776655543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=8.8e-16  Score=125.59  Aligned_cols=263  Identities=14%  Similarity=0.105  Sum_probs=180.4

Q ss_pred             hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcccc
Q 022127           17 RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSV   96 (302)
Q Consensus        17 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   96 (302)
                      .+.-.|-.-+.+++|.+++..++|.+.+. +-+..||+....+++..++.....|+.+++.+..+.++.         ++
T Consensus       136 ~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~---------~~  205 (412)
T PF01306_consen  136 NGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA---------KK  205 (412)
T ss_dssp             HSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-----------
T ss_pred             hcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc---------CC
Confidence            34455677788899999999999998864 446778876666666555555544444432221111100         00


Q ss_pred             cCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh---ccchhhhhHHhhHHHHHHHhhhhhhhcccch
Q 022127           97 KKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVNLKQAAWFSAVPWGTMAVSGYMAGKASDS  173 (302)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  173 (302)
                      ++....+..+++|+|++|.+.+........+..+....|.|.++.+   +.+....|++.+...+..++...+.+++.+|
T Consensus       206 ~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r  285 (412)
T PF01306_consen  206 DKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR  285 (412)
T ss_dssp             ----HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0011123568899999999888887777777777777888887633   3445668888888889999999999999999


Q ss_pred             hhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHH-HH
Q 022127          174 LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIA-NS  251 (302)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~-~~  251 (302)
                      +|.|        +.+ .++..+..+=.......++++.....-.+-+.-.........-++.+..| |..++...+. +.
T Consensus       286 ig~k--------~~L-llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~  356 (412)
T PF01306_consen  286 IGAK--------NLL-LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQF  356 (412)
T ss_dssp             H-HH--------HHH-HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTT
T ss_pred             cChH--------hHH-HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence            9965        223 34555556666677778888877777777777777777777788888887 6678888885 67


Q ss_pred             HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          252 AGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       252 ~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ..+++..+.+.+.|.+.|+.| ++..+++.+.+.+...++..+..+++
T Consensus       357 ~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  357 AKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            788999999999999999998 88899888888776666655544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.73  E-value=4e-15  Score=123.68  Aligned_cols=260  Identities=15%  Similarity=0.116  Sum_probs=169.1

Q ss_pred             hhhHHHHHhhhhhhHHHHHHHH-HHHHHhhcC---CchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcC
Q 022127           17 RASAIGICMGGFHLGNVVGLLL-TPIMLSTIG---ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK   92 (302)
Q Consensus        17 r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   92 (302)
                      +++-.|-....+++|-+++... ++.+....+   ....+++.+...++.... .+.+|+.|.+++..++.+        
T Consensus       123 ~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~--------  193 (400)
T PF03825_consen  123 RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVK--------  193 (400)
T ss_pred             ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCcc--------
Confidence            3444455566667777666543 233333333   234566655555444333 334677663222111110        


Q ss_pred             cccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccc
Q 022127           93 SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD  172 (302)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  172 (302)
                           +....+..+++|||++....+..++..........+.+.|+++.-|.+....+...+...+..++.....+++.+
T Consensus       194 -----~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~  268 (400)
T PF03825_consen  194 -----KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK  268 (400)
T ss_pred             -----cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 011123457999999999988888888888889999999999944377778888888888888888888899989


Q ss_pred             hhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-cchHHHHHHHHH----HHHHhhhhhhhhhhHHhhhcc-chhhhHH
Q 022127          173 SLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITI----ALSLSSFSQAGYLLNIQEIAP-DCAGFLH  246 (302)
Q Consensus       173 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p-~~~~~~~  246 (302)
                      |+|.+         .++.++.+..++=..+.... ++.+.......+    -+...+..+.....++.+..| +.|+++.
T Consensus       269 r~g~~---------~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q  339 (400)
T PF03825_consen  269 RFGIK---------WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ  339 (400)
T ss_pred             hcCHH---------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence            88854         23345655555555555554 343333333333    445556666677777888888 7899999


Q ss_pred             HHHHHHH-HHHHHHHHHHhhhhhcccc-----chhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          247 GIANSAG-TLAAIISTIGTGYFVQWLG-----SFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       247 g~~~~~~-~~g~~i~~~i~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ++++... .+|..+|..++|++.|+.|     .+...+.+.+++.++..+++.++.|++
T Consensus       340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9988765 6899999999999999876     234556666666666666666555554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.73  E-value=2.2e-15  Score=126.92  Aligned_cols=283  Identities=14%  Similarity=0.105  Sum_probs=184.9

Q ss_pred             hhhhhhhcccCccch--hhHHHHHhhhhhhHHHHHHHHHHHH--Hhhc-------------CCchHHHHHHHHHHHHHHH
Q 022127            3 AMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIM--LSTI-------------GISGPFILFSSLGLLWLST   65 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~-------------gwr~~f~~~~~~~~~~~~~   65 (302)
                      +..++++|.+|+++|  +.+.++.+...++|.++|+.+++..  .+.+             +.|..|++.+++.++..++
T Consensus       134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~  213 (477)
T TIGR01301       134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI  213 (477)
T ss_pred             HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            456889999998765  6899999999999999999999875  2222             5688999988877777777


Q ss_pred             HHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcC-----ccHHHHHHHHHhhhHHHHHHHhhhhHHHH-
Q 022127           66 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-----LPSWTVIIANITNNWGYFVLLSWMPIYFN-  139 (302)
Q Consensus        66 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (302)
                      ..+..||+|..+++..+++  +.    +++++.+....+++++++     |.++.+++..++...+.+.+..|...|+. 
T Consensus       214 t~~~v~E~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~  287 (477)
T TIGR01301       214 ALSAVKENPLIGSDDFINS--EA----APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGR  287 (477)
T ss_pred             HeeeeeccCCCccccchhh--hc----ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            7777888764322111000  00    011111111234444443     57899999999999999999999998876 


Q ss_pred             Hhhccchh------h----hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccc-
Q 022127          140 TVFNVNLK------Q----AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-  208 (302)
Q Consensus       140 ~~~g~s~~------~----~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (302)
                      +.++-++.      +    ..+......+...+.+++..++.+|+|+|        |....++.++.++++....+..+ 
T Consensus       288 ~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~~~i~~~  359 (477)
T TIGR01301       288 EVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG--------KRLWGIVNIILAICLAATVLVTYV  359 (477)
T ss_pred             HHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence            45554321      1    12233344555556666777788888753        22223454444444433332111 


Q ss_pred             --------------------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc---chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          209 --------------------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP---DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       209 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                                          .+..+..+...++.....+...++++++..+   +..|..+|+.|.+..+.+.+.....|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g  439 (477)
T TIGR01301       360 AKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG  439 (477)
T ss_pred             hhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence                                2444555555556666666777777777666   34699999999999999999999888


Q ss_pred             hhhcccc-chhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          266 YFVQWLG-SFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       266 ~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      .+.+..| +....+.+.++.++++.+......++.
T Consensus       440 ~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       440 PWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             HHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            8666555 355678888888888877766554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.72  E-value=8.6e-15  Score=117.88  Aligned_cols=275  Identities=13%  Similarity=0.128  Sum_probs=193.0

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHH---HHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFS---SLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~---~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      ..++++|..|||+|+++.++...+.-+|.+++..+.+.+.+.++-.-..-+..   .+.++..++..+ -.|.+.++.. 
T Consensus       110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w-g~E~r~~~~~-  187 (403)
T PF03209_consen  110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW-GQEPRRSRRA-  187 (403)
T ss_pred             HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCcccc-
Confidence            45788999999999999999999999999999999999988776433333322   223332222222 2222221111 


Q ss_pred             ChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHH
Q 022127           81 SKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  160 (302)
                      +          .+++++.+....++++..+|+........+.....++.-...+-+|--+++|+++.+...+......+.
T Consensus       188 ~----------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~  257 (403)
T PF03209_consen  188 A----------AAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGT  257 (403)
T ss_pred             c----------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHH
Confidence            0          001111222346788889999888888888888888888899999999999999999999999999999


Q ss_pred             Hhhhhhhhcccch-hhccCCchhHHHHHHHHHhhhhhHHHH---HHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          161 AVSGYMAGKASDS-LIKAGYSLTLVRKIMQSIGFIGPGVSL---LCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       161 ~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      .++....|++..| .++++.     +    ..++..+..++   +......+.+.......+.++..+.......+.+.+
T Consensus       258 L~G~~~~g~~l~~~~~~~~~-----a----~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~  328 (403)
T PF03209_consen  258 LLGMLLAGFLLSRRLGKKRT-----A----ALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMD  328 (403)
T ss_pred             HHHHHHHHHHhcCCCCchHH-----H----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            9999999987664 333211     1    23333333333   233344566666666677777777777777777777


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc----c-----chhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL----G-----SFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~----g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ..+ ++.|..+|.....+.++..++..++|.+.|..    +     .|..+|.+-++..+++..+..-+.+++
T Consensus       329 lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~~~~  401 (403)
T PF03209_consen  329 LTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRLDRRE  401 (403)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            775 88999999999999999999999999987741    2     377778877777777766655444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.72  E-value=3.4e-15  Score=123.42  Aligned_cols=246  Identities=15%  Similarity=0.119  Sum_probs=183.1

Q ss_pred             hhhhcccC-ccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-------hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 022127            6 TLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS   77 (302)
Q Consensus         6 ~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~   77 (302)
                      ++..|..+ ++||.+..++.+.+.++|..+...+...+..       ..||+..-.+.++++.+..+.+++..+|++.+.
T Consensus       135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~  214 (467)
T COG2211         135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVET  214 (467)
T ss_pred             hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence            44555555 5899999999999999998888777776664       347888888888888888888888888876533


Q ss_pred             CCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHH
Q 022127           78 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  157 (302)
                      ...+++++.            +.+.....+++||++...++..++..............|.+..+|.+............
T Consensus       215 ~~~~~~~~~------------~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~  282 (467)
T COG2211         215 QPTKTGVKL------------KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASG  282 (467)
T ss_pred             ccCcccccc------------cHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHH
Confidence            221111111            11223456889999999999888888787777888888888888888888878877777


Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhhHHh
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQ  235 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
                      .+.+++.++..++.+|+|+|+..         ..+.++..++...+.+.+  +....++..++...+.+...+..+++.+
T Consensus       283 ~~~l~~~~~~p~L~~~~gkk~~~---------~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~  353 (467)
T COG2211         283 AGLLIGLILWPRLVKKFGKKKLF---------LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVA  353 (467)
T ss_pred             HHHHHHHHhHHHHHHHhchHHHH---------HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhc
Confidence            78888899999999999976432         244555555554444443  4455555557777778888888898887


Q ss_pred             hhcc-c-------hhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          236 EIAP-D-------CAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       236 ~~~p-~-------~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      |..+ +       ..|...|...++..+|.+++..+.|+..+..|
T Consensus       354 d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         354 DTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             chhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7654 2       26888999999999999999999999987654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=2.9e-16  Score=123.90  Aligned_cols=259  Identities=16%  Similarity=0.093  Sum_probs=160.6

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh---hcCCchHHHHHHHHHHHH----HHHHHhhhcCCCC
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---TIGISGPFILFSSLGLLW----LSTWTSKVTNDPC   75 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gwr~~f~~~~~~~~~~----~~~~~~~~~~~p~   75 (302)
                      ...++++|.+++|+|++.++......++|.++||.+|+++.+   ..| +.+|.....+..+.    .....+++||+-+
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            356899999999999999999999999999999999999987   233 22333322222221    1223344677643


Q ss_pred             CCCCCChHHHHHHHhcCccc--ccCCCCcchHHhhcCccHH-------HHHHHHHhhhHHHHHHHhhhhHHHHHhhccch
Q 022127           76 NSPFVSKSELRLIQAGKSDS--VKKRNPPSLRHLLSKLPSW-------TVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  146 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  146 (302)
                      .++..  +|....++..+++  ..+..+.......||++..       ...+..+.+...+.....+.+.+-++.+|+++
T Consensus       219 ~rk~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss  296 (451)
T KOG2615|consen  219 LRKRN--DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSS  296 (451)
T ss_pred             chhhc--ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCCh
Confidence            33222  1111111111111  0000111122334554322       22333333343333444444444466799999


Q ss_pred             hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhh
Q 022127          147 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  226 (302)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (302)
                      .+.|.+.+..++.+.+.........||.+..       .+.....++..+.-...++.....+........+..+.....
T Consensus       297 ~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  297 MQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             hhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            9999999988888888777766666666422       122223444444445555555555555555566666666667


Q ss_pred             hhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          227 QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       227 ~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      .+....+.....| ++||+.+|+..+.+.++.++||.+.|.+..+.
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws  415 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS  415 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence            7777888888888 89999999999999999999999999887653

>PRK09848 glucuronide transporter; Provisional

Probab=99.72  E-value=5e-15  Score=126.37  Aligned_cols=161  Identities=14%  Similarity=0.059  Sum_probs=114.3

Q ss_pred             chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchh
Q 022127          103 SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLT  182 (302)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  182 (302)
                      .+++++|||+++...+..++............|.|+++.+|.++...++......++.+++.++.+++.||+++|+.   
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~---  296 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT---  296 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---
Confidence            46789999999998888888888888888888888888888777665555555566778889999999999987532   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c-------hhhhHHHHHHHH
Q 022127          183 LVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D-------CAGFLHGIANSA  252 (302)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-------~~~~~~g~~~~~  252 (302)
                           + ..+..+..++...+...+  +.+.......+.+.+.+...+...+...|..| +       ++|...|+.+..
T Consensus       297 -----~-~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~  370 (448)
T PRK09848        297 -----F-LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT  370 (448)
T ss_pred             -----H-HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence                 2 234444344333333322  33333333444555566666667777777665 2       358999999999


Q ss_pred             HHHHHHHHHHHhhhhhcccc
Q 022127          253 GTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       253 ~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ..+|..+++.+.+.+.+..|
T Consensus       371 ~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        371 RKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999876544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.71  E-value=6.3e-15  Score=126.05  Aligned_cols=255  Identities=13%  Similarity=0.057  Sum_probs=166.5

Q ss_pred             hhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC-CCCChHH
Q 022127            6 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS-PFVSKSE   84 (302)
Q Consensus         6 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~   84 (302)
                      ..++|..|.|.|....++.....-.....++.++..+..+-+|||.|++..+...+.+++.+++..++++++ +..+...
T Consensus       153 ~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~  232 (599)
T PF06609_consen  153 LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSK  232 (599)
T ss_pred             HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcH
Confidence            457999999999888877776666666677777777766779999999998877775555443332222111 1111111


Q ss_pred             HHHHHh------------------------cCcc------------------------cc--cCCCCcchHHhhcC-ccH
Q 022127           85 LRLIQA------------------------GKSD------------------------SV--KKRNPPSLRHLLSK-LPS  113 (302)
Q Consensus        85 ~~~~~~------------------------~~~~------------------------~~--~~~~~~~~~~~~~~-~~~  113 (302)
                      ++.+.+                        ....                        |.  +.+++.-..+++|+ |.+
T Consensus       233 ~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~  312 (599)
T PF06609_consen  233 REQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGF  312 (599)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHH
Confidence            111111                        0000                        11  11233445678888 456


Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchh---hhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK---QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      ....+..+.....++....+.|+.....++-|+.   +.++.....+++..++.++.|.+..++++-        |+.+.
T Consensus       313 ~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~--------Kw~li  384 (599)
T PF06609_consen  313 AALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI--------KWQLI  384 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch--------hHHHH
Confidence            6666777777778888888999988887877653   567787888888999999999999888754        33333


Q ss_pred             HhhhhhHH--HHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          191 IGFIGPGV--SLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      .+.+....  +.+.....++....+....+.+++.+..........+-..| ++.|++.|+..+++.+|+.+|..+...+
T Consensus       385 ~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34333332  33333334454445566666666666655555666666666 8899999999999999999999887665


Q ss_pred             h
Q 022127          268 V  268 (302)
Q Consensus       268 ~  268 (302)
                      .
T Consensus       465 ~  465 (599)
T PF06609_consen  465 F  465 (599)
T ss_pred             H
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=5.8e-16  Score=124.20  Aligned_cols=179  Identities=12%  Similarity=0.079  Sum_probs=153.0

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      .+....+.+...+...-.+..-.|...++ .++|..|.|.+.+...+...++..+.|.++||.+.|+..         ..
T Consensus        30 if~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm---------~~   99 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM---------AF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee---------hH
Confidence            44556666666666666777777776666 789999999999999999999999999999999977543         48


Q ss_pred             hhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh--hhhh
Q 022127          192 GFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT--GYFV  268 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~--g~l~  268 (302)
                      +++++++..+++.+.++.....++..+.+.+.+...|+....+.+.+| ++||+..++.|+..|+|+++.|.+.  +.+.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            888999999999999888888888888999999999999999988887 8999999999999999999999999  8888


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 022127          269 QWLGSFQAFLTVTAGLYFVTTIFWNLYSTGERV  301 (302)
Q Consensus       269 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (302)
                      ++. +|+..|++-++++++..++.+...|++.|
T Consensus       180 ~~~-~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         180 FHG-GWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             hcc-chhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            876 49999999999988887777777666543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.68  E-value=5.1e-15  Score=125.71  Aligned_cols=170  Identities=14%  Similarity=0.147  Sum_probs=131.2

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      .++...+..+..+........++|.+.++ +|.|..+.++..+...++..++.++.|++.||+|+|+..         ..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~---------~~   93 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM---------GI   93 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH---------HH
Confidence            34445555555555556677888888887 999999999999999999999999999999999987432         35


Q ss_pred             hhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          192 GFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      +.++..++.......++.+.......+.+.+.+...+.......+..| ++|++++|+.+...++|..++|.+.+.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663         94 GLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555556666666666666555555555555566666777788888888 7899999999999999999999999999988


Q ss_pred             ccchhHHHHHHHHHHHHHHHHH
Q 022127          271 LGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       271 ~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      .| |+..|.+.++..++..+..
T Consensus       174 ~g-w~~~f~~~~i~~~~~~~~~  194 (434)
T PRK11663        174 YG-WRYGMMIAGIIAIVVGLFL  194 (434)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHH
Confidence            76 9999988877665544433

>PRK10054 putative transporter; Provisional

Probab=99.68  E-value=4.3e-15  Score=124.54  Aligned_cols=172  Identities=8%  Similarity=0.065  Sum_probs=131.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      |+++.+.+..++...+.+....++|.|+++++|+|..+.|+..+...+...++.+..|+++||+|+|+..         .
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~---------~   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM---------L   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH---------H
Confidence            4567777888888888888899999999988999999999999999999999999999999999987422         2


Q ss_pred             HhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          191 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .+.....++.....+.++.+.......+.+...+...+.......|..| ++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555556665544444333333334445556667777776 789999999999999999999999999875


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHH
Q 022127          270 WLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       270 ~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                       .+ |+..|.+.+++.+++.+...
T Consensus       158 -~g-~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        158 -QS-INLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             -hc-cCcHHHHHHHHHHHHHHHHH
Confidence             44 88899988877777655443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.68  E-value=1.4e-14  Score=124.28  Aligned_cols=248  Identities=10%  Similarity=0.002  Sum_probs=155.8

Q ss_pred             hhhhhhccc-CccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-------cCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022127            4 MSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------IGISGPFILFSSLGLLWLSTWTSKVTNDPC   75 (302)
Q Consensus         4 ~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~   75 (302)
                      -.++..|.. +++||.+..++...+.++|..+.+.+...+.+.       .+|+....+.+++.++..+..++..||+++
T Consensus       127 ~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~  206 (473)
T PRK10429        127 FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS  206 (473)
T ss_pred             HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC
Confidence            346778888 578999999998888888877766655544332       246666666666666555555555666532


Q ss_pred             CCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhH
Q 022127           76 NSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  155 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  155 (302)
                      +++..++ +          +++.+.+..++.+++||.++.+....++..........+.+.|.+...+ +....+.+...
T Consensus       207 ~~~~~~~-~----------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~  274 (473)
T PRK10429        207 SDNQVSA-E----------GSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSY  274 (473)
T ss_pred             ccccccc-c----------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHH
Confidence            2110000 0          0001112245567789998888888887777777666776766665433 55566667677


Q ss_pred             HHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHH---h--hcccchHHHHHHHHHHHHHhhhhhhhh
Q 022127          156 PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC---L--NYAKSPAVAAVLITIALSLSSFSQAGY  230 (302)
Q Consensus       156 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
                      ..++.+++.++.+++.||+|+|+..       .  .+..+..++...   .  ...++.+...+...+.+.+.+...+..
T Consensus       275 ~~i~~ii~~~~~~~l~~r~gkk~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~  345 (473)
T PRK10429        275 AGAANLVTLILFPRLVKSLSRRILW-------A--GASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ  345 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHH-------H--HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999986322       1  222222212111   1  112233333334444445555556666


Q ss_pred             hhHHhhhcc--------chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          231 LLNIQEIAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       231 ~~~~~~~~p--------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      .++.+|..+        +..|...|..+....++..+++.+.|.+.+..|
T Consensus       346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777777644        225668999999999999999999999987654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.67  E-value=2.8e-15  Score=127.88  Aligned_cols=257  Identities=13%  Similarity=0.004  Sum_probs=157.2

Q ss_pred             hhhhhhhcccCccchhhHH---HHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCC-CCC
Q 022127            3 AMSTLTSRWFPSHERASAI---GICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC-NSP   78 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~-~~~   78 (302)
                      +.-++..|..+ |+++...   ++.....++|..+++.++|.+.+.++||..|++.+.+.++.. ....+.+|++. ..+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~-~~~~~~~E~~~~~~~  217 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL-FVSNLSKERRAFVRP  217 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-HHHHhcccccccccc
Confidence            45567788887 5444433   333444558999999999999999999999999888877763 33445666531 111


Q ss_pred             CCChHHHH---HHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHh-hhHHHHHHHhhhhHHHHHhhccchhhhhHHhh
Q 022127           79 FVSKSELR---LIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  154 (302)
Q Consensus        79 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  154 (302)
                      +.++++..   ....... +..++.....++.+++|.++...+..++ ............ .+.++..|+++.+.|....
T Consensus       218 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~  295 (468)
T TIGR00788       218 RIGTYLEMNMALLTLGVL-ANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKV  295 (468)
T ss_pred             cccccchhhhhhhhhhHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHH
Confidence            11110000   0000000 0000001134556788888775555544 221111111110 1233458999999999999


Q ss_pred             HHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc----------ccchHHHHHHHHHHHHHhh
Q 022127          155 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY----------AKSPAVAAVLITIALSLSS  224 (302)
Q Consensus       155 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  224 (302)
                      ..+++.+++....+++.+|++.|        +.+ .++.++..++......          .++.+.......+.....+
T Consensus       296 ~~~v~~i~g~~~~~~~~~~~~~r--------~~l-~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g  366 (468)
T TIGR00788       296 VGNLGSLCGVGGYDRFLKTFPYR--------LLF-GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ  366 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHH--------HHH-HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence            99999999988888887777643        222 2344333333322110          1222223333445556666


Q ss_pred             hhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          225 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       225 ~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ....+....+.+..| +++|+.+++.+++.++|..+++.++|.+.++.|
T Consensus       367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777777888888888 889999999999999999999999999988765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=99.66  E-value=6.4e-14  Score=119.52  Aligned_cols=241  Identities=13%  Similarity=0.047  Sum_probs=145.8

Q ss_pred             hhhhcccC-ccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-------CCchHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 022127            6 TLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFSSLGLLWLSTWTSKVTNDPCNS   77 (302)
Q Consensus         6 ~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~   77 (302)
                      ++..|..+ ++||++..++...+..+|..+++.+...+.+..       +|+....+.+++.++...+.+...+|+++++
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~  211 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP  211 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC
Confidence            56667776 689999999999999999988888776665543       5777777777766666555555455543221


Q ss_pred             CCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHH
Q 022127           78 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  157 (302)
                      +. +.                +.+...+..++||.++.+....++..............|.+...|. +...+.+.....
T Consensus       212 ~~-~~----------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~  273 (460)
T PRK11462        212 PT-TT----------------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYC  273 (460)
T ss_pred             cc-CC----------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHH
Confidence            10 00                0112466788899888776666666555555444455555554443 334455666777


Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      ++++++.+++++++||+++|+.       .. .................. +........++.+.+.+...+..+++..|
T Consensus       274 i~~iig~~l~~~l~~r~gkk~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        274 VGNLIGSALAKPLTDWKCKVTI-------FW-WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHhChHHH-------HH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999987632       11 111111111222111122 22222223333333344444444566665


Q ss_pred             hcc--------chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          237 IAP--------DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       237 ~~p--------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ..+        +..|...+.......+|.++++.+.|.+.+..|
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            544        124566677788999999999999999886543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.66  E-value=7.1e-15  Score=125.77  Aligned_cols=176  Identities=10%  Similarity=0.042  Sum_probs=137.3

Q ss_pred             cCc-cHHHHHHHHHhhhHHHHHHHhhhhHHHHHh--hccchhhhhHHhhHHHHHHHhhhhhhhcccch-hhccCCchhHH
Q 022127          109 SKL-PSWTVIIANITNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLV  184 (302)
Q Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~  184 (302)
                      ++| .++.+.+..++...+++....++|.|+++.  +|++..+++...+....+..++.+++|+++|| +|+|+      
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~------   80 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK------   80 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH------
Confidence            444 456677777777889999999999999987  89999999999999999999999999999999 78753      


Q ss_pred             HHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c---hhhhHHHHHHHHHHHHHHHH
Q 022127          185 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D---CAGFLHGIANSAGTLAAIIS  260 (302)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~---~~~~~~g~~~~~~~~g~~i~  260 (302)
                         .+..+..+..++...+...++.+.......+.+.+.+...+...+...+..| +   +|+++.++.+...++|..++
T Consensus        81 ---~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        81 ---TMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             ---HHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence               2235555666666666665555444444445555566666777788888776 3   38889999999999999999


Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          261 TIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       261 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      |.+.+++.++.| |+..|.+.++..+++.+.+..
T Consensus       158 ~~l~g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       158 PLLAGVIAENYG-YHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876 999999888766666555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.65  E-value=8.1e-14  Score=119.99  Aligned_cols=285  Identities=15%  Similarity=0.092  Sum_probs=159.2

Q ss_pred             chhhhhhhcccCccc--hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH---HHHHhhhcCCCCC
Q 022127            2 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL---STWTSKVTNDPCN   76 (302)
Q Consensus         2 p~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~---~~~~~~~~~~p~~   76 (302)
                      |...+++.|++|+++  |+.++++++.+.++|..++|.+++++.+++|||+.|.+.++..++..   +.....++|.+++
T Consensus       131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~  210 (500)
T PRK09584        131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK  210 (500)
T ss_pred             CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC
Confidence            566788999998654  45688999999999999999999999999999999999775443322   2223334443211


Q ss_pred             CCCCChHHHHHH----------------HhcCccccc-------------CCCCcchHHhhcCccHHHHHHHHHhhhHHH
Q 022127           77 SPFVSKSELRLI----------------QAGKSDSVK-------------KRNPPSLRHLLSKLPSWTVIIANITNNWGY  127 (302)
Q Consensus        77 ~~~~~~~~~~~~----------------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (302)
                      .+..+.+.....                ..+.+..+.             .......++.-+ ++.+.. +..+.....+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~f  288 (500)
T PRK09584        211 PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAAR-RKMIVA-FILMLEAIIF  288 (500)
T ss_pred             CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-HHHHHH-HHHHHHHHHH
Confidence            111000000000                000000000             000000011111 222222 2233444455


Q ss_pred             HHHHhhhhHHHHH--hhccch------hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH
Q 022127          128 FVLLSWMPIYFNT--VFNVNL------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  199 (302)
Q Consensus       128 ~~~~~~~~~~~~~--~~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (302)
                      +......|.++..  ..+.+.      ...+.+.+...+..++..++.+++-+|.++|...   .++.  .+++++.+++
T Consensus       289 ~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~---~~~~--~~G~~l~~l~  363 (500)
T PRK09584        289 FVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPM---PHKF--AIGMVLCSGA  363 (500)
T ss_pred             HHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc---HHHH--HHHHHHHHHH
Confidence            5555556665443  111221      2245566667767777777776666666655322   1222  3666666666


Q ss_pred             HHHhhccc---------chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          200 LLCLNYAK---------SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       200 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      ...+....         +.++.+....+.+.+..+..|.....+.+..| +.||+.+|+......+|..++..+.+....
T Consensus       364 f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~  443 (500)
T PRK09584        364 FLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV  443 (500)
T ss_pred             HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            55543322         23445556666677777788888888989888 789999998877777777776666643211


Q ss_pred             ---------cccchhHHHHHHHHHHHHHHHHHH
Q 022127          270 ---------WLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       270 ---------~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                               ..+.+...|...++..++..++.+
T Consensus       444 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        444 PDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                     112266777777766554444333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.65  E-value=7e-20  Score=156.43  Aligned_cols=285  Identities=15%  Similarity=0.119  Sum_probs=172.3

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh---cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC-
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---IGISGPFILFSSLGLLWLSTWTSKVTNDPCNS-   77 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-   77 (302)
                      +....++.|..|+++|++..++.+....+|..++..++..+.+.   .+||..+...++++++..+ ...++||+|+-- 
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~  199 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLL  199 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccceec
Confidence            45678899999999999999999999999999998887655443   3599999998887776554 445689998721 


Q ss_pred             --CCCChHHHHHH--------HhcCccc-----ccCCCCcchHHhhcCcc----HHHHHHHHHhhhH-HHHHHHhhhhHH
Q 022127           78 --PFVSKSELRLI--------QAGKSDS-----VKKRNPPSLRHLLSKLP----SWTVIIANITNNW-GYFVLLSWMPIY  137 (302)
Q Consensus        78 --~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~  137 (302)
                        ++.++.++...        +++.+++     +.++.+..++++++++.    ............. +......+.|.+
T Consensus       200 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i  279 (451)
T PF00083_consen  200 SKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI  279 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence              11111110000        0000000     11111134667777643    2232333333322 333444555655


Q ss_pred             HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh-----cccc----
Q 022127          138 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN-----YAKS----  208 (302)
Q Consensus       138 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----  208 (302)
                      +++ .+.+..  -.......+...++.+.+..+.||+|||+...         .+.....++...+.     ..++    
T Consensus       280 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  280 FEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI---------IGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccc-cccccc--cccccccccccccccccccccccccccccccc---------ccccccccccccccccccccccccccc
Confidence            555 666655  22333445667777788889999999885432         33333333333221     1112    


Q ss_pred             hHHHHHHHHHHHHHhh-hhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Q 022127          209 PAVAAVLITIALSLSS-FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  286 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  286 (302)
                      ....+....+.....+ ...+..+.+..|.+| +.|+++.|+....++++++++|.+...+.+..+ ....+.+.+++++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCL  426 (451)
T ss_pred             ccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHH
Confidence            1122222222222223 223444577799999 899999999999999999999999998888765 3456666666666


Q ss_pred             HHHHHHHhhccCcc
Q 022127          287 VTTIFWNLYSTGER  300 (302)
Q Consensus       287 ~~~~~~~~~~~~~~  300 (302)
                      +..+....+.+|+|
T Consensus       427 i~~i~~~~~lpET~  440 (451)
T PF00083_consen  427 IAIIFVYFFLPETK  440 (451)
T ss_pred             HHHhheeEEEeeCC
Confidence            66666666666554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.64  E-value=3.1e-14  Score=123.29  Aligned_cols=284  Identities=13%  Similarity=0.071  Sum_probs=171.1

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-CC
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF-VS   81 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~   81 (302)
                      ...+++|..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. .+++||+|+.--+ .+
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~  241 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGR  241 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCC
Confidence            456889999999999999999999999999996555444332 48999999988888887777 7778999872111 01


Q ss_pred             h-------------------HHHHHHHhcCccc-ccCCCCcchHHhhc----CccHHHHHHHHHhhhHHHHHHHhhhhHH
Q 022127           82 K-------------------SELRLIQAGKSDS-VKKRNPPSLRHLLS----KLPSWTVIIANITNNWGYFVLLSWMPIY  137 (302)
Q Consensus        82 ~-------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      .                   .+.+........+ ...+.+..++++++    ++.+....+..+.+..+......|.+.+
T Consensus       242 ~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i  321 (513)
T KOG0254|consen  242 LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI  321 (513)
T ss_pred             hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence            1                   1111111000000 00111112444443    2234455555666665666677888888


Q ss_pred             HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc-----------
Q 022127          138 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-----------  206 (302)
Q Consensus       138 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  206 (302)
                      +++ .|.+... .......++...++..+...+.||+|||+..         ..+.....++.+++...           
T Consensus       322 f~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll---------l~s~~~m~~~~~~~~~~~~~~~~~~~~~  390 (513)
T KOG0254|consen  322 FKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLL---------LFGAAGMSICLVILAVVGVFALYYPNSS  390 (513)
T ss_pred             HHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH---------HHhHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            777 5665433 4455566777888888889999999976432         23333333333222210           


Q ss_pred             -cchHHHHHHHHHHHHHhhh-hhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Q 022127          207 -KSPAVAAVLITIALSLSSF-SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG  283 (302)
Q Consensus       207 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  283 (302)
                       ...+..+...++....... ..+..+....|.+| +.|+++.++........+.+-......+.+..+ ....|.....
T Consensus       391 ~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~  469 (513)
T KOG0254|consen  391 KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFGG  469 (513)
T ss_pred             cchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHH
Confidence             1122333333333333333 33444667799999 899999999999999888776666666555433 3445555555


Q ss_pred             HHHHHHH-HHHhhccCcc
Q 022127          284 LYFVTTI-FWNLYSTGER  300 (302)
Q Consensus       284 ~~~~~~~-~~~~~~~~~~  300 (302)
                      ...+... ..+++.+++|
T Consensus       470 ~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  470 ICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHHHHHHheEEcccCC
Confidence            5555555 4555555544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.64  E-value=3.8e-14  Score=121.99  Aligned_cols=178  Identities=9%  Similarity=0.076  Sum_probs=129.2

Q ss_pred             HHhhcCcc-HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccch-hhccCCchh
Q 022127          105 RHLLSKLP-SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLT  182 (302)
Q Consensus       105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~  182 (302)
                      .+.+++|+ ++......++...+++....+++.|+++++|+|..+++...+..........+++|+++|| +|+|+.   
T Consensus        14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~---   90 (500)
T PRK09584         14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV---   90 (500)
T ss_pred             hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH---
Confidence            45567774 8888888889999999999999999998899999988887776665555556789999999 587532   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-ch--hhhHHHHHHHHHHHHHH
Q 022127          183 LVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DC--AGFLHGIANSAGTLAAI  258 (302)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~~~~~g~~~~~~~~g~~  258 (302)
                            ...+.++..++.......+ +.........+.+.+.+...+...+...+.+| ++  +..+.++.+...++|..
T Consensus        91 ------~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~  164 (500)
T PRK09584         91 ------IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF  164 (500)
T ss_pred             ------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH
Confidence                  2344445455544444433 23333333344455566666676778888776 32  45678888999999999


Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022127          259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      ++|.+.|++.|+.| |+..|.+.++..+++.+.+
T Consensus       165 ~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        165 FSMLATPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999886 9999998876666555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.64  E-value=3.6e-14  Score=119.18  Aligned_cols=171  Identities=12%  Similarity=0.131  Sum_probs=133.2

Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhh
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  193 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  193 (302)
                      +.+....++...+.+....++|.|++++.|+|+.+.|+..+...+...+.+++.|+++||+++|+.         ...+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~---------l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM---------IVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH---------HHHHH
Confidence            455677777788888888999999988899999999999999999999999999999999997632         23555


Q ss_pred             hhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          194 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ....+........++.+.......+.+...+...+...+...+..| ++|+++.|+.+...++|..+||.+.+.+. ..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            5555555555556666655555555555555566677777888776 89999999999999999999999999998 455


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhh
Q 022127          273 SFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                       |+..|++.+...++..++....
T Consensus       163 -~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        163 -FRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHh
Confidence             9999988877766655444333

>PTZ00207 hypothetical protein; Provisional

Probab=99.63  E-value=6.6e-14  Score=120.51  Aligned_cols=296  Identities=14%  Similarity=0.037  Sum_probs=199.0

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC---
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP---   78 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---   78 (302)
                      +++...+.+|+| ++||++.|+...+.++|.++.+.+...+.+ .+|+..|++.+++++++.++...++++.|....   
T Consensus       139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~  216 (591)
T PTZ00207        139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQ  216 (591)
T ss_pred             HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccc
Confidence            355677899997 678999999999999999864444443333 478899999999999988887777766553211   


Q ss_pred             --CCChHHHH-----------------H---------------------------------------H------H-----
Q 022127           79 --FVSKSELR-----------------L---------------------------------------I------Q-----   89 (302)
Q Consensus        79 --~~~~~~~~-----------------~---------------------------------------~------~-----   89 (302)
                        ..+++|+.                 .                                       .      .     
T Consensus       217 ~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip  296 (591)
T PTZ00207        217 EKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFP  296 (591)
T ss_pred             ccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              11222222                 0                                       0      0     


Q ss_pred             ---------h-cCcc---------------cc-------c---CCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhh
Q 022127           90 ---------A-GKSD---------------SV-------K---KRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  134 (302)
Q Consensus        90 ---------~-~~~~---------------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
                               + +.+.               +.       +   .+...+.++.+++.++|.+.+..++...........+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~  376 (591)
T PTZ00207        297 LTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA  376 (591)
T ss_pred             HHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence                     0 0000               00       0   0011256677888999999999999988888888888


Q ss_pred             hHHHHHhhccchhh--hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHH
Q 022127          135 PIYFNTVFNVNLKQ--AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVA  212 (302)
Q Consensus       135 ~~~~~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (302)
                      .++.+..-|.+.++  ...+.++.++++.+|++..|.++....+|+......|...+.+..+ ..++.+++.........
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence            88888832763333  3337789999999999999999844444331100124444445554 33333333332221345


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHH-HHHhhhhhcccc------------chhHHHH
Q 022127          213 AVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIIS-TIGTGYFVQWLG------------SFQAFLT  279 (302)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~-~~i~g~l~~~~g------------~~~~~~~  279 (302)
                      .+...+.+++.|..++......+|++.|+-|+-+-+.....-+|+.+- -.+.|.++|+-.            -++..|+
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~  535 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLA  535 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHH
Confidence            666677778889999999999999998999998888888888887765 568888887521            2778999


Q ss_pred             HHHHHHHHHHHHHHhhccCcc
Q 022127          280 VTAGLYFVTTIFWNLYSTGER  300 (302)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~  300 (302)
                      +.+++++++.+...++..+.|
T Consensus       536 v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        536 FLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             HHHHHHHHHHHHHhheeeehH
Confidence            999999999888766654433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.62  E-value=2.6e-14  Score=120.93  Aligned_cols=182  Identities=16%  Similarity=0.068  Sum_probs=133.4

Q ss_pred             chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchh
Q 022127          103 SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLT  182 (302)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  182 (302)
                      +++.+.|+|.++......++............|.+.++ .+.++.+.|+..+...++..+++++.|+++||++||+... 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~-   86 (417)
T PRK10489          9 DLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL-   86 (417)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE-
Confidence            45556678888888888888887877778888988877 6779999999999999999999999999999999987542 


Q ss_pred             HHHHHHHHHhhhhhHHHHHHh-----hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHH
Q 022127          183 LVRKIMQSIGFIGPGVSLLCL-----NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLA  256 (302)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g  256 (302)
                              .+..+.+++....     ...++.+.......+.+.+.+...+.......+..| ++++++.++.+...++|
T Consensus        87 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (417)
T PRK10489         87 --------LARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLG  158 (417)
T ss_pred             --------ehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHH
Confidence                    1222222221111     112344444444444445555555666777778776 78999999999999999


Q ss_pred             HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          257 AIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       257 ~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ..+||.+.+.+.+..+ |++.+.+.++..++..+.....
T Consensus       159 ~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        159 SVISPALGGLLIAAGG-VAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             HHhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999988765 8888888777766665554444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.61  E-value=5e-14  Score=119.23  Aligned_cols=174  Identities=11%  Similarity=0.130  Sum_probs=129.9

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchh-hccCCchhHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLTLVRKIMQ  189 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  189 (302)
                      +.++......+...+.++++..++|.|+++.+|+++.+++...........++.+++|+++||+ |||+.        + 
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~--------i-   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA--------V-   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH--------H-
Confidence            4566777777888889999999999999988999999999999999999999999999999999 87632        2 


Q ss_pred             HHhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c--hhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          190 SIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D--CAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~--~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      ..+.++..++...+...+ +.........+...+.+...+...+...|.+| +  +|.++.++.+...++|+.++|.+.+
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            244444444443433322 11222222223334445555666778888887 3  5899999999999999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ++.+..| |+..|.+.++..+++.+.+..
T Consensus       160 ~L~~~~G-w~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        160 YAQEEYS-WAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HHHhhhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            9998876 999999887766666655543

>PRK10504 putative transporter; Provisional

Probab=99.61  E-value=9.7e-14  Score=119.36  Aligned_cols=174  Identities=9%  Similarity=0.018  Sum_probs=135.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +.+|.+.+..++..........++|.+.++ +|.|+.+.++..+...++..++.++.|+++||+|||+..         .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~---------~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF---------F   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH---------H
Confidence            356777888888887888888999999887 899999999999998999999999999999999986322         2


Q ss_pred             HhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          191 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .+..+..++.......++.+.......+.+.+.+...+.......|..| ++++++.|+.+...++|..++|.+.|.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            3333444444444455566655666666666666666777777888887 789999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          270 WLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       270 ~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +.| |+..|.+......++.+.....
T Consensus       160 ~~g-w~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        160 YAS-WHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            876 9999998877766666555444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.60  E-value=1.1e-13  Score=116.17  Aligned_cols=171  Identities=12%  Similarity=-0.012  Sum_probs=127.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      ++.+.+..+......+.....+|.+.++ +|.|+.+.++..+...++..++.+..|.+.||+|||+.         +..+
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~---------~~~~   80 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQS-FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL---------LIGL   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH---------HHHH
Confidence            3444444444333333344456766555 99999999999999999999999999999999997632         2355


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      .....++.......++.+...+...+.+...+...+...+...+..| ++|+++.|+.....++|..++|.+.+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~  160 (390)
T PRK03545         81 FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL  160 (390)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            55556666666667777766666555555555556667778888877 88999999999999999999999999998887


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh
Q 022127          272 GSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       272 g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      | |+..|.+.+++.++..+....
T Consensus       161 g-w~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        161 G-WRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             c-HHHHHHHHHHHHHHHHHHHHH
Confidence            6 999999988877766555444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.59  E-value=2.7e-15  Score=121.33  Aligned_cols=284  Identities=15%  Similarity=0.165  Sum_probs=187.7

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc---------------CCchHHHHHHHHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---------------GISGPFILFSSLGLLWLST   65 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------gwr~~f~~~~~~~~~~~~~   65 (302)
                      ||.+.++.+|...+++||...+...+..+.|...|.+++-.+..-+               -||..|.+..++++. .+.
T Consensus       162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly  240 (538)
T KOG0252|consen  162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLY  240 (538)
T ss_pred             CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHH
Confidence            7899999999999999999999999999999999888876665321               399999986665555 445


Q ss_pred             HHhhhcCCCCCCCCCChHHH-------HHHHhcCc-----ccccCCCC---cchHHhhcC---ccHHHHHHHHHhhhHHH
Q 022127           66 WTSKVTNDPCNSPFVSKSEL-------RLIQAGKS-----DSVKKRNP---PSLRHLLSK---LPSWTVIIANITNNWGY  127 (302)
Q Consensus        66 ~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~  127 (302)
                      ....+||+++.....+.+.+       +....+.+     ++..+..+   ..+...+..   +.+......+|....++
T Consensus       241 ~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiaf  320 (538)
T KOG0252|consen  241 FRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAF  320 (538)
T ss_pred             hhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55557887653311110000       00000000     00001111   112222222   56677788899999999


Q ss_pred             HHHHhhhhHHHHHhhccchhhhhH--------Hhh-HHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHH
Q 022127          128 FVLLSWMPIYFNTVFNVNLKQAAW--------FSA-VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV  198 (302)
Q Consensus       128 ~~~~~~~~~~~~~~~g~s~~~~~~--------~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  198 (302)
                      |....+....+++ .|+.+.+...        ... +...+.+.|-.+...++|++||++         ....++.+..+
T Consensus       321 y~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~---------iq~~GF~~~~i  390 (538)
T KOG0252|consen  321 YGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY---------IQLMGFFIMTI  390 (538)
T ss_pred             hccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH---------HHHhhHHHHHH
Confidence            9999888888886 5665544333        111 222333446677788999999653         33466666666


Q ss_pred             HHHHhhcccc----hHHHHHHHHHHHHHhhhhh-hhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc---
Q 022127          199 SLLCLNYAKS----PAVAAVLITIALSLSSFSQ-AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ---  269 (302)
Q Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---  269 (302)
                      ..+.+....+    .....++..+..++..+.. ........|.+| +.|++..|+....+..|++++.....++.+   
T Consensus       391 ~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y  470 (538)
T KOG0252|consen  391 FFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY  470 (538)
T ss_pred             HHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC
Confidence            6666555433    2223344444444444432 233566689999 899999999999999999999999999998   


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          270 --WLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       270 --~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                        ..| .+.++++.+++.+++.+..+++.
T Consensus       471 p~~~g-~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  471 PPNIG-VRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             Ccccc-chHHHHHHHHHHHHhHheeEEee
Confidence              555 88999999999999988877776

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.59  E-value=1.1e-13  Score=114.98  Aligned_cols=170  Identities=14%  Similarity=0.077  Sum_probs=128.9

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .+....+............+|.|..+ .+.++.+.++..+...++..++.++.|+++||+|||+..         ..+..
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~---------~~~~~   72 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM---------IGADL   72 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH---------HHHHH
Confidence            34556666666777777888888887 789999999999999999999999999999999976322         23333


Q ss_pred             hhHHHHHHhhccc-----chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          195 GPGVSLLCLNYAK-----SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       195 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      +..++.......+     +.+.......+.+.+.+...+...+...|..| ++|++..|..+....+|..++|.+.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        73 IRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333332222     55555666666666777777888888899888 88999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          269 QWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       269 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +..| |+..+.+.++..+++.+.....
T Consensus       153 ~~~g-~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       153 ATLG-IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence            8876 9998888777666665544443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.59  E-value=1.6e-12  Score=113.13  Aligned_cols=250  Identities=12%  Similarity=-0.003  Sum_probs=155.4

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC---CC
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS---PF   79 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~---~~   79 (302)
                      ....++.|++++++|+.+..+ ......++.+++..++++.+  +||+.+++..++..+..+. +++.||+|+-.   .+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            456788999999999999999 88888888888888888877  9999999999888876655 55566888621   11


Q ss_pred             CChHHHH--HHHh----cCcc--------------cccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 022127           80 VSKSELR--LIQA----GKSD--------------SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFN  139 (302)
Q Consensus        80 ~~~~~~~--~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (302)
                      .++.++.  ...+    ..+.              ....+++..+.++++.|++....+...+.... +....+.-.+..
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~y~gl~~~~  345 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSLVYYGLSLNV  345 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhHHHHhhhhhh
Confidence            1111100  0000    0000              01111224567788887544333333322211 122222222222


Q ss_pred             HhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch---HHHHHHH
Q 022127          140 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP---AVAAVLI  216 (302)
Q Consensus       140 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  216 (302)
                      +.+|.+..   ......+..........+...|+.|||         .....+.....++++........   +......
T Consensus       346 ~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
T KOG0255|consen  346 SGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP  413 (521)
T ss_pred             hhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            22444432   222333335666666668888999754         33345555556665555544322   2355666


Q ss_pred             HHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          217 TIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .++.++.+......+....|..| ..|+.+.+..+....++++++|.+.-....
T Consensus       414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66667777777777888999999 889999999999999999999998865544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.59  E-value=1.9e-13  Score=114.31  Aligned_cols=172  Identities=8%  Similarity=-0.095  Sum_probs=135.8

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +.++...+..+............+|.+.++ +|.|..+.++..+...++..++.+..|++.||+|+|+.         ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~---------~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI---------LL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH---------HH
Confidence            456677777777777777888888887766 89999999999999999999999999999999997632         23


Q ss_pred             HhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          191 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .+..+.+++.+.....++.+...+...+.+.+.+...+.......+..| ++|+++.+.......++..++|.+.+.+.+
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            5555566666666777777776666666666666555666667778777 678999999999999999999999999988


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHH
Q 022127          270 WLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       270 ~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      ..+ |+..|.+.++..++..+...
T Consensus       153 ~~g-wr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        153 EFS-WRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHH
Confidence            776 99999988877666555433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.59  E-value=3.3e-13  Score=113.18  Aligned_cols=155  Identities=10%  Similarity=-0.022  Sum_probs=122.2

Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      ..+.....+|.+.++ +|.++.+.+...+...++..++.++.|++.||+|||+.         +..+..+..++......
T Consensus        35 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~---------~~~~~~~~~~~~~~~~~  104 (394)
T PRK10213         35 VEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV---------VILFAVLLTLSCLLVSF  104 (394)
T ss_pred             HHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH---------HHHHHHHHHHHHHHHHH
Confidence            333444567777666 89999999999999999999999999999999997632         23455555555555556


Q ss_pred             ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Q 022127          206 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      .++.+.......+.+...+...+.......|..| ++|+++.+......+++..++|.+.+.+.+..| |+..|++.+++
T Consensus       105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l  183 (394)
T PRK10213        105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVM  183 (394)
T ss_pred             HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHH
Confidence            6677777776677777777777788888888887 889999999999999999999999999999886 99999888766


Q ss_pred             HHHHHHH
Q 022127          285 YFVTTIF  291 (302)
Q Consensus       285 ~~~~~~~  291 (302)
                      .++..+.
T Consensus       184 ~~~~~l~  190 (394)
T PRK10213        184 GVLCIFW  190 (394)
T ss_pred             HHHHHHH
Confidence            6654443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.59  E-value=2e-13  Score=115.14  Aligned_cols=173  Identities=9%  Similarity=-0.013  Sum_probs=129.4

Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhh
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  193 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  193 (302)
                      ....+.+++.+..........| .+++++|.|..+.++..+...++..++.+..|++.||+|+|+         ....+.
T Consensus        11 ~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~---------~~~~~~   80 (412)
T TIGR02332        11 IFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR---------WIAGIM   80 (412)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH---------HHHHHH
Confidence            3444444544555555556666 566669999999999999999999999999999999999763         223556


Q ss_pred             hhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc--
Q 022127          194 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW--  270 (302)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~--  270 (302)
                      ++..++.......++.+.....-.+.+.+.+...+.......|..| ++|+++.|+.+....+|..+++.+.+++.+.  
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5666666666666777666666666666666666777777888888 7899999999999999999999999988742  


Q ss_pred             ----ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          271 ----LGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       271 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                          . +|+..|.+.++..++..++..++.+
T Consensus       161 ~~~~~-gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       161 LMALK-GWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             CCCcc-chhHHHHHHHHHHHHHHHHHhhccC
Confidence                3 4999999987776665554444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.58  E-value=1.7e-14  Score=116.69  Aligned_cols=272  Identities=17%  Similarity=0.145  Sum_probs=175.5

Q ss_pred             hhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh------cCCch--HHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 022127            6 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST------IGISG--PFILFSSLGLLWLSTWTSKVTNDPCNS   77 (302)
Q Consensus         6 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~gwr~--~f~~~~~~~~~~~~~~~~~~~~~p~~~   77 (302)
                      .+..-|||++||+.+..+-.++..+|.+++.++...+..+      ..|..  .|+..++++.+..++..+..++.|+..
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP  242 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP  242 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            5567899999999999999999999999999988887653      34654  355555555555555555555655544


Q ss_pred             CCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHH
Q 022127           78 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  157 (302)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  157 (302)
                      +.......+          ..+...+.++.++|+++..+.+.+......+++..+.+-.-+.. .|++...+|+......
T Consensus       243 ps~s~~~~~----------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~i  311 (480)
T KOG2563|consen  243 PSASQAALQ----------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMI  311 (480)
T ss_pred             CchhHhhhh----------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHH
Confidence            332222111          01134468899999999999999988888888877776655554 5777788999999999


Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH-HHHhhccc---chHHHHHHHHHHHHHhhhhhhhhhhH
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS-LLCLNYAK---SPAVAAVLITIALSLSSFSQAGYLLN  233 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
                      +++++++.+.|.+.||.++-+.       .. .+......++ +.+.....   ..+.......+.+++.....|...-.
T Consensus       312 v~Gmlga~~~gii~Dktk~fk~-------~~-~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~El  383 (480)
T KOG2563|consen  312 VAGMLGALASGIIADKTKKFKL-------TT-LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFEL  383 (480)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHH-------HH-HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceee
Confidence            9999999999999999976432       11 2222222222 22222111   12222222222223333334444433


Q ss_pred             H-hhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc---chhHHHHHHHHHHHHHHHHHHhhc
Q 022127          234 I-QEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG---SFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       234 ~-~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      . +..+|...++..|+.+..+++-+.+-..+.+...+..+   ++...-+.....+.++.++..+++
T Consensus       384 gvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r  450 (480)
T KOG2563|consen  384 GVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFR  450 (480)
T ss_pred             eeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhh
Confidence            3 44678888999999999999999999999999887655   123333334444444444444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.58  E-value=1.6e-13  Score=114.92  Aligned_cols=166  Identities=15%  Similarity=0.102  Sum_probs=125.4

Q ss_pred             HHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH
Q 022127          120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  199 (302)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (302)
                      .+.............|.+.++ +|.|+.+.++..+...++..++.++.|++.||+|||+..         ..+..+..++
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~---------~~~~~~~~~~   83 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL---------LLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH---------HHHHHHHHHH
Confidence            333344444455566766555 899999999999999999999999999999999976322         2444455555


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Q 022127          200 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFL  278 (302)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~  278 (302)
                      .......++.+.......+.+.+.+...+.......|..| ++|++..|..+....++..++|.+.+.+.++.+ |+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            5555556666665655566666666667777888888887 789999999999999999999999999988876 99999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 022127          279 TVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~  296 (302)
                      .+.++..++..+......
T Consensus       163 ~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       163 AFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            888777776665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.58  E-value=1.4e-13  Score=113.66  Aligned_cols=165  Identities=18%  Similarity=0.250  Sum_probs=129.2

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      .+..++...........+|.++.+++|.|+.+.++..+...++..++.++.|+++||+|+|+         ....+.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~l~~~~~~~   72 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR---------VLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH---------HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee---------eEeehhhhh
Confidence            34555566666667777785666669999999999999999999999999999999999752         334555555


Q ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Q 022127          197 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQ  275 (302)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~  275 (302)
                      .++.....+.++.+.......+.+.+.+...+.......|..| ++|++..+..+...++|..++|.+.+.+.+..+ |+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~  151 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WR  151 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HC
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cc
Confidence            5553333333555566666667777777888888899999888 699999999999999999999999999997776 99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022127          276 AFLTVTAGLYFVTTIF  291 (302)
Q Consensus       276 ~~~~~~~~~~~~~~~~  291 (302)
                      ..|++.++..++..++
T Consensus       152 ~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  152 WAFLISAILSLIAAIL  167 (352)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhh
Confidence            9999999888888764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=4.2e-13  Score=108.93  Aligned_cols=176  Identities=15%  Similarity=0.016  Sum_probs=154.6

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      ...+.+.+..|......+.....+|...++ +|.|..++|...+.+.++..++.++...+.||+.||         .+..
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr---------~lLl   82 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR---------RLLL   82 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH---------HHHH
Confidence            355678888888888999999999999998 999999999999999999999999999999999865         3334


Q ss_pred             HhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          191 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      ..+.+..++.......++.....+.-.+.+...+..++.......++.| ++|+++.++......++..+|.+++.++-|
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            6666667777888888999888888888888888889999999999887 899999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          270 WLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       270 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ..| ||..|...+++.++..+......+
T Consensus       163 ~~G-WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         163 LFG-WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             Hhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            998 999999999998888776655544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.57  E-value=3.6e-13  Score=115.47  Aligned_cols=174  Identities=9%  Similarity=0.075  Sum_probs=131.8

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccch-hhccCCchhHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  189 (302)
                      |.++.+.+..+...+++|....+++.|+++.+|.+..+++...........+..+++|+++|| +|||+..         
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~---------   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI---------   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH---------
Confidence            456777788888889999999999999999999999999988888887888888899999999 8976322         


Q ss_pred             HHhhhhhHHHHHHhhcccchH-HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c--hhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          190 SIGFIGPGVSLLCLNYAKSPA-VAAVLITIALSLSSFSQAGYLLNIQEIAP-D--CAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~--~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      ..+.++..++.+......+.. .......+.+.+.+...+...+...|.+| +  +|+.+.+......++|..++|.+.|
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            355555555555444443322 22234445556666677777888888886 4  3577899999999999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ++.++.| |+..|++.++..+++.+.+..
T Consensus       165 ~l~~~~g-w~~~F~i~~i~~~~~~~~~~~  192 (489)
T PRK10207        165 VIADKFG-YSVTYNLCGAGLIIALLVYFA  192 (489)
T ss_pred             HHHHhhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            9999986 999998876655555444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.57  E-value=1.5e-13  Score=114.51  Aligned_cols=168  Identities=15%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      .+...+.....+......|.+.++ +|.|..+.+...+...++..++.+..|+++||+|||+..         ..+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~---------~~~~~~~   78 (377)
T TIGR00890         9 TVIMCFTSGYVYTWTLLAPPLGRY-FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA---------MLGGILY   78 (377)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh---------HHhHHHH
Confidence            333333344455556666665555 999999999999999999999999999999999987543         2445555


Q ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhH
Q 022127          197 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQA  276 (302)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~  276 (302)
                      .++.......++.+.......+.+.+.+...+.......+..|++|+++.+.......+|..+++.+.+.+.+..| |+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  157 (377)
T TIGR00890        79 GLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPA  157 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHH
Confidence            5555555666666665555555555555555555666777788889999999999999999888878887777665 999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 022127          277 FLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~  295 (302)
                      .|.+.++..++..+..+.+
T Consensus       158 ~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       158 AFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9998888777666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.56  E-value=3.2e-13  Score=114.97  Aligned_cols=174  Identities=14%  Similarity=0.085  Sum_probs=117.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +.++...+.....+.....+....| ++++ .|.|+.+.++..+...++..++.+..|+++||+|+|+..         .
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~---------~   95 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL---------P   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh---------H
Confidence            3444444444444444444455555 4556 599999999999999999999999999999999987543         2


Q ss_pred             HhhhhhHHHHHHhhcc----cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          191 IGFIGPGVSLLCLNYA----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      .+.++.+++.......    ++.........+.+.+.+...+.......|..| ++|++++|+.+...++++.++|.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712        96 AGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            3333334343333322    233333333444455555555666667778786 88999999999999999999998887


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ...+...+|+..|++.++..++..+...++
T Consensus       176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       176 LGMAWFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            765543359999999888777655544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.56  E-value=6.7e-13  Score=111.49  Aligned_cols=171  Identities=12%  Similarity=0.036  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      .+...+..++...........+|.+.++ +|.|..+.+...+...++..++.++.|++.||+|+|+.         +..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~---------~~~~   78 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ---------LIFG   78 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---------HHHH
Confidence            4455555555555555666778887666 89999999999999999999999999999999997632         2345


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      ..+..++.......++.+.......+.+.+.+...+.......+..| ++|+...+..+....+++.++|.+.+.+.+..
T Consensus        79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  158 (394)
T PRK03699         79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS  158 (394)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            55555555555556666665555566666666666667777788877 78999999998888999999999999887654


Q ss_pred             cchhHHHHHHHHHHHHHHHHHH
Q 022127          272 GSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       272 g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      .+|+..|...++..++..++.+
T Consensus       159 ~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        159 IEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            3599999887777666554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.55  E-value=8.9e-13  Score=113.85  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +..+.+..+....-......-+|.+.++ +|.+..+.++..+.+.++...+.+..|+++||+|||+.         ...+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~---------l~~~   77 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL---------LMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH---------HHHH
Confidence            3445555666665666677778988777 89999999999999999999999999999999997632         2355


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh-hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE-IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      ..+..++.......++.+..++...+.+.+.+...+.......+ ..| ++|+++.|+......+|..+||.+.|.+.++
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            66666666666677777776666666666666655655555544 445 8899999999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          271 LGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       271 ~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .| |++.|++...+.++..++.....
T Consensus       158 ~g-wr~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        158 FY-WGSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHHHhC
Confidence            86 99999988777776665554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.55  E-value=1e-12  Score=108.76  Aligned_cols=280  Identities=13%  Similarity=0.057  Sum_probs=175.1

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHH--HHHHHHHHHHHHhhhcCCCCC---C
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILF--SSLGLLWLSTWTSKVTNDPCN---S   77 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~--~~~~~~~~~~~~~~~~~~p~~---~   77 (302)
                      +..+++.+|+|++||+++.|+..++..+|.+++++++++ ...+|||+.+...  ...+.+..+++.+++|..++.   +
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~  212 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN  212 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence            567899999999999999999999999999999999999 5678999876553  223334455566667744331   1


Q ss_pred             CCCChH--HHHHHHhcCcccc--cC----C--------CCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh
Q 022127           78 PFVSKS--ELRLIQAGKSDSV--KK----R--------NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  141 (302)
Q Consensus        78 ~~~~~~--~~~~~~~~~~~~~--~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (302)
                      +..+.+  ...+.++...++.  +.    .        ...+.++..+||.+....+-+.+...+++-+.+|.....++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v  292 (511)
T TIGR00806       213 RLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTL  292 (511)
T ss_pred             cccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            110000  0000000000000  00    0        011344557889888888888888888888888777777664


Q ss_pred             hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q 022127          142 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALS  221 (302)
Q Consensus       142 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
                      .+-++...|..-+...+.+.+.++..|++-.++.+.       ....+.+..++.+..++++...++.+...+...+...
T Consensus       293 ~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~  365 (511)
T TIGR00806       293 DESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRG  365 (511)
T ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHH
Confidence            332223567777777888888999999885555221       2333344445555567777788888888888888777


Q ss_pred             HhhhhhhhhhhHHhhh-ccchhhhHHHHHHHHHHHHHHHHHHHh----hhhhc---cccchhHHHHHHHHHHHHHHH
Q 022127          222 LSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAAIISTIGT----GYFVQ---WLGSFQAFLTVTAGLYFVTTI  290 (302)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~~~~~g~~i~~~i~----g~l~~---~~g~~~~~~~~~~~~~~~~~~  290 (302)
                      ...+..+....-+.+. ..+.-|...|+.+++.-+-..+-..+.    |.=.|   ++--|..-|.+.+.+.++..+
T Consensus       366 ~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~  442 (511)
T TIGR00806       366 IYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG  442 (511)
T ss_pred             HHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence            7777666665555544 446679999988877766555544433    22111   111244455555555555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.55  E-value=6.8e-13  Score=111.96  Aligned_cols=169  Identities=8%  Similarity=-0.030  Sum_probs=125.9

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      ......+.............|.+.++ +|.|+.+.++..+...++..++.++.|+++||+|+|+..         ..+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~   88 (406)
T PRK11551         19 LCFLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL---------IVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---------HHHHH
Confidence            33444445455555566667777666 899999999999999999999999999999999987543         23333


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS  273 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~  273 (302)
                      +..+..+.....++.+.......+.+...+...+.......|..| ++|++++++.+....+|..+++.+.+.+.+..+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  167 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-  167 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-
Confidence            444444444555666666666666666666667777888888887 889999999999999999999999888887765 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 022127          274 FQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      |+..+++.+++.++..+....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMR  188 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            998888877665555544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.55  E-value=3.2e-13  Score=116.62  Aligned_cols=170  Identities=10%  Similarity=0.046  Sum_probs=133.1

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      ...+..+.............|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.         ...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~---------~~~~~~   75 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL---------FLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH---------HHHHHH
Confidence            44455555555556666778877776 89999999999999999999999999999999997632         235555


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS  273 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~  273 (302)
                      +..++.......++.........+.+.+.+...+.......|..| ++|+++.++......+|..++|.+.+++.++.+ 
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-  154 (485)
T TIGR00711        76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-  154 (485)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-
Confidence            556666666666777766666666666677777778888889887 889999999999999999999999999999876 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 022127          274 FQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      |+..|++.+...++..++....
T Consensus       155 w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       155 WRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             ceehhhhhhHHHHHHHHHHHHH
Confidence            9999988777766665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=3.1e-13  Score=113.75  Aligned_cols=170  Identities=15%  Similarity=0.056  Sum_probs=123.2

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      ++++..+.+..+............+|.++++++|.|+.+.++..+...++..+++++.|+++||+|||+...        
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~--------   85 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVV--------   85 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHH--------
Confidence            356667777788888887778889999988889999999999999999999999999999999999875431        


Q ss_pred             HHhhhhhHHH---HHHhhccc-----chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHH
Q 022127          190 SIGFIGPGVS---LLCLNYAK-----SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIIS  260 (302)
Q Consensus       190 ~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~  260 (302)
                       .+.+...++   .......+     +....+....+.+.+.+...+.......+..| ++|+++.++.....++|..++
T Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  164 (399)
T PRK05122         86 -FGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIG  164 (399)
T ss_pred             -HHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHH
Confidence             333222222   11212222     12233334444455555555666666677766 889999999998899999999


Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          261 TIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       261 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      |.+.+.+.+..| |+..+.+..+..++..
T Consensus       165 ~~l~~~l~~~~g-~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        165 APLGVLLYHWGG-LAGLGLLIMLLALLGL  192 (399)
T ss_pred             HHHHHHHHHccc-HHHHHHHHHHHHHHHH
Confidence            999999998876 8887776665544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.55  E-value=1.9e-13  Score=114.69  Aligned_cols=157  Identities=15%  Similarity=0.080  Sum_probs=123.4

Q ss_pred             HHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc
Q 022127          128 FVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  207 (302)
Q Consensus       128 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (302)
                      .......|. +++++|.|..+.++..+...++..++.++.|+++||+|||+...         .+.++..++.......+
T Consensus        11 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~---------~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893        11 ANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA---------VFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             HhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeH---------HHHHHHHHHHHHHHHHc
Confidence            344445555 55559999999999999999999999999999999999876542         44444455555555556


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  286 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  286 (302)
                      +.+.......+.+.+.+...+.......|..| ++|++..++.+...++|..++|.+.+.+.+..+ |+..|.+.++..+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  159 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI  159 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence            77666666677777777777888888899888 889999999999999999999999999988876 9999988887776


Q ss_pred             HHHHHHHhh
Q 022127          287 VTTIFWNLY  295 (302)
Q Consensus       287 ~~~~~~~~~  295 (302)
                      +..+.....
T Consensus       160 ~~~~~~~~~  168 (399)
T TIGR00893       160 IWGVLWLKF  168 (399)
T ss_pred             HHHHHhhhe
Confidence            665555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=4.8e-13  Score=111.61  Aligned_cols=168  Identities=10%  Similarity=0.051  Sum_probs=118.9

Q ss_pred             HHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhH
Q 022127          118 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG  197 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  197 (302)
                      +..++...+.......+|.|+++++|.|+.+.++..+...+...+..+..|+++||+|+|+.       .+ ..+.....
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~-------~~-~~~~~~~~   75 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKG-------LI-LFCCLLAA   75 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH-------HH-HHHHHHHH
Confidence            44666667777788889999988799999999999999999999999999999999998632       12 23333333


Q ss_pred             HHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhH--HHHHHHHHHHHHHHHHHHhhhhhccccch
Q 022127          198 VSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFL--HGIANSAGTLAAIISTIGTGYFVQWLGSF  274 (302)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~--~g~~~~~~~~g~~i~~~i~g~l~~~~g~~  274 (302)
                      +........++.+.......+.+...+...+.......|..| +.|+.+  .+......++|..++|.+.+.+.+..| |
T Consensus        76 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~  154 (375)
T TIGR00899        76 LACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-F  154 (375)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-c
Confidence            344444455555544333333333334445555566667666 445543  677788889999999999999998876 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 022127          275 QAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +..|++.+.+.++..+....
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988877766655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.55  E-value=1e-12  Score=110.36  Aligned_cols=172  Identities=10%  Similarity=-0.006  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhh
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF  193 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  193 (302)
                      .......+....+.......+|.+.++ +|.|..+.+...+...++..++.++.|+++||+|||+.        + ..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~--------l-~~~~   75 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV--------A-IPGA   75 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH--------H-HHHH
Confidence            334444455555555666778877776 89999999999999999999999999999999997632        1 2444


Q ss_pred             hhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          194 IGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      +...++.......++.+.......+.+.+.+...+.......|..| ++|+++.+..+...+++..++|.+.+.+.+..+
T Consensus        76 ~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g  155 (392)
T PRK10473         76 ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP  155 (392)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4555555555555565554444455555555556667777888877 889999999999999999999999998887765


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhc
Q 022127          273 SFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                       |+..+.+.+++.++..++.....
T Consensus       156 -~~~~~~~~~~~~~i~~~~~~~~~  178 (392)
T PRK10473        156 -WQSLFYTMAAMGILVLLLSLFIL  178 (392)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHc
Confidence             99988888877766665544443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=5e-13  Score=118.55  Aligned_cols=154  Identities=10%  Similarity=-0.020  Sum_probs=114.8

Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  209 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
                      +...+|.+.++ +|.+..+.+++.+...++.+++.+++|+++||+|||+..         .+++++..++.++..+.++.
T Consensus       186 is~ilp~i~~~-~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l---------ii~lil~~i~~ll~afa~s~  255 (742)
T TIGR01299       186 VGFVLPSAEKD-LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL---------LICLSVNGFFAFFSSFVQGY  255 (742)
T ss_pred             HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---------HHHHHHHHHHHHHHHHHhhH
Confidence            34455554444 899999999999999999999999999999999986322         23444444444455555666


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc------------chhH
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG------------SFQA  276 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g------------~~~~  276 (302)
                      +..++..++.+++.+...+....++.|..| ++|+...+..+....+|.++++.++..+....|            +|+.
T Consensus       256 ~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~  335 (742)
T TIGR01299       256 GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV  335 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence            666666677777777777888899999998 889999999999999999999987766654321            4788


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022127          277 FLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       277 ~~~~~~~~~~~~~~~~~  293 (302)
                      .+++.++..++..+..+
T Consensus       336 l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       336 FVIVCAFPCVFAIGALT  352 (742)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777766665554433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.54  E-value=6.9e-13  Score=109.83  Aligned_cols=163  Identities=9%  Similarity=-0.065  Sum_probs=115.5

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      +.....+...+|.+.++ +|.|+.+.++..+...++..++.+..|+++||+|||+.        + .........+....
T Consensus         4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~--------~-~~~~~~~~~~~~~~   73 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF--------L-FGSLATFAAAAGRL   73 (368)
T ss_pred             hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------H-HHHHHHHHHHHHHH
Confidence            34555566777877776 99999999999999999999999999999999996532        1 12222222222222


Q ss_pred             hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Q 022127          204 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA  282 (302)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~  282 (302)
                      ...++.......-.+.+.+.+.. ........|..| ++|+++.++.+....+|..+++.+.+.+.++.| |+..|.+.+
T Consensus        74 ~~~~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~  151 (368)
T TIGR00903        74 LDPFNYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIA  151 (368)
T ss_pred             HHhccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHH
Confidence            22245555555555555555543 333344466666 899999999999999999999999999998876 999999988


Q ss_pred             HHHHHHHHHHHhhccC
Q 022127          283 GLYFVTTIFWNLYSTG  298 (302)
Q Consensus       283 ~~~~~~~~~~~~~~~~  298 (302)
                      ++.++..++.....++
T Consensus       152 ~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       152 AVAAAGIILVLAALPA  167 (368)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7776666555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.54  E-value=9.3e-12  Score=105.59  Aligned_cols=280  Identities=10%  Similarity=0.023  Sum_probs=154.5

Q ss_pred             chhhhhhhcccCcc--chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCC---
Q 022127            2 PAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN---   76 (302)
Q Consensus         2 p~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~---   76 (302)
                      |...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+..|||+.|.+.++.. +..++.+...++..++   
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~~~~~~l~~~~~  197 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM-IAGLVIFLCGNRHFTHTRG  197 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHHHhhhhhccCCC
Confidence            45678899999975  69999999999999999999999999999999999999866533 3333333322211111   


Q ss_pred             -CCCCChHHHHH----------------HHhc-Cccccc------------------CCCCcchHHhhcCccHHHHH---
Q 022127           77 -SPFVSKSELRL----------------IQAG-KSDSVK------------------KRNPPSLRHLLSKLPSWTVI---  117 (302)
Q Consensus        77 -~~~~~~~~~~~----------------~~~~-~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---  117 (302)
                       +++..++++..                .... ..++..                  ...+.+..|  | ++++...   
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--r-~r~~~~~~l~  274 (493)
T PRK15462        198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ--R-KELGLIVTLT  274 (493)
T ss_pred             CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--H-hhHHHHHHHH
Confidence             11111111100                0000 000000                  000000000  1 2222222   


Q ss_pred             HHHHhhhHHHHHHHhhhhHHHHHh-----hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          118 IANITNNWGYFVLLSWMPIYFNTV-----FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +........+....+-+..|.++.     +|++ ...++..+...+.-++.+++.+++-.|..+|+.......|..  ++
T Consensus       275 ~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa--~g  351 (493)
T PRK15462        275 FFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA--LG  351 (493)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH--HH
Confidence            112222222222234444555443     2322 235677788888888888888888777744321111224444  55


Q ss_pred             hhhhHHHHHHhhc----c-----cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHH-HHHHHHHH
Q 022127          193 FIGPGVSLLCLNY----A-----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAG-TLAAIIST  261 (302)
Q Consensus       193 ~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~-~~g~~i~~  261 (302)
                      +++.+++...+..    .     .+.++.+....+...+--+..|...+.+.++.| +.+|..+|...... .+|..++.
T Consensus       352 ~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g  431 (493)
T PRK15462        352 LGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAG  431 (493)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444321    1     134444555555555666677888899999999 78999999986643 56766666


Q ss_pred             HHhhhhhcc-----------ccchhHHHHHHHHHHHHH
Q 022127          262 IGTGYFVQW-----------LGSFQAFLTVTAGLYFVT  288 (302)
Q Consensus       262 ~i~g~l~~~-----------~g~~~~~~~~~~~~~~~~  288 (302)
                      .+.+...+.           ...|...|...+...++.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        432 VIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            666655311           113556777766655544

>PRK11043 putative transporter; Provisional

Probab=99.54  E-value=1.4e-12  Score=109.88  Aligned_cols=165  Identities=11%  Similarity=0.093  Sum_probs=117.3

Q ss_pred             hhHHHHHHHhhhhHH--HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHH
Q 022127          123 NNWGYFVLLSWMPIY--FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSL  200 (302)
Q Consensus       123 ~~~~~~~~~~~~~~~--~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (302)
                      ..........+.|.+  +++++|.++.+.+...+...++..++.++.|+++||+|||+..         ..+..+..++.
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~~~~~~~   85 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL---------LAGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH---------HHHHHHHHHHH
Confidence            334444445555544  4455899999999999999999999999999999999987422         24444444455


Q ss_pred             HHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Q 022127          201 LCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  279 (302)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  279 (302)
                      ......++.+.......+.+.+.+...+.......|..| ++++...+..+....++..++|.+.+.+.+..| |+..++
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~  164 (401)
T PRK11043         86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFA  164 (401)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Confidence            555555665555544444444444444455566777777 668888898888899999999999999998886 999998


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 022127          280 VTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~  297 (302)
                      +.++..++..+....+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        165 TLFAITLLLILPTLRLKP  182 (401)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            887777766655544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=4.9e-13  Score=113.31  Aligned_cols=180  Identities=13%  Similarity=0.034  Sum_probs=120.3

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      +.+++|++|...+..++...+......++|.|+++++|+|+.+.|...+...++..+++++.|+++||+|+|+..     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~-----   79 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL-----   79 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            456789999999999998888888899999999998999999999999999999999999999999999987322     


Q ss_pred             HHHHHHhhhhhHHHHH---HhhcccchH-HHHHHHHHHHHHhhhhhhhhhhHHhhh---ccchhhhHHHHHHHHHHHHHH
Q 022127          186 KIMQSIGFIGPGVSLL---CLNYAKSPA-VAAVLITIALSLSSFSQAGYLLNIQEI---APDCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       186 ~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~g~~~~~~~~g~~  258 (302)
                        .  .+.....+...   .....+... .......++....+...........+.   .+++++..+|..+...++|..
T Consensus        80 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  155 (420)
T PRK09528         80 --L--WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWA  155 (420)
T ss_pred             --H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHH
Confidence              1  11111111111   111111000 011111222222222222222222222   234567788888999999999


Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ++|.+.|.+.+. + ++..|++.++..++..++.+...
T Consensus       156 i~~~~~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        156 LCAFIAGILFNI-N-PQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHHHHHHHHHhc-C-chHhHHHHHHHHHHHHHHHhccc
Confidence            999999999875 3 78888888777766665555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.53  E-value=8.9e-13  Score=110.54  Aligned_cols=171  Identities=13%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      +|+++.+.+..++............+.+.++ ++.++.+.++..+...+...+..++.|+++||++||+...        
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~--------   72 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMF--------   72 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhH--------
Confidence            4667777777777776666566666666555 8889889999999999999999999999999999986432        


Q ss_pred             HHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          190 SIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                       .+..+..++.+......+.   .....+.+.+.+...+...+.+.|..| ++|++++|+.+...+++..+||.++|.+.
T Consensus        73 -~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         73 -IANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2322222222222222222   333345566677778888899999888 88999999999999999999999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          269 QWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       269 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +..  +...+.+.+...+++.+....+
T Consensus       149 ~~~--~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195        149 DPH--AEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence            863  6666666655555444433333

>TIGR00895 2A0115 benzoate transport

Probab=99.52  E-value=3.2e-13  Score=113.45  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=119.1

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      ...........|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.         ...+..+..++....
T Consensus        30 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~---------~~~~~~~~~~~~~~~   99 (398)
T TIGR00895        30 GYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV---------LLWSILLFSVFTLLC   99 (398)
T ss_pred             HHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH---------HHHHHHHHHHHHHHH
Confidence            33344445556666555 89999999999999999999999999999999996532         234444455555555


Q ss_pred             hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Q 022127          204 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA  282 (302)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~  282 (302)
                      ...++.+.......+.+.+.+...+...+...|..| ++|+++.|+.+....+|..++|.+.+.+.+..| |+..+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~  178 (398)
T TIGR00895       100 ALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGG  178 (398)
T ss_pred             HHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeehhhhh
Confidence            555666655555566666666677778888899888 789999999999999999999999999998876 888888776


Q ss_pred             HHHHHHHHHHH
Q 022127          283 GLYFVTTIFWN  293 (302)
Q Consensus       283 ~~~~~~~~~~~  293 (302)
                      +..++..++..
T Consensus       179 ~~~~~~~~~~~  189 (398)
T TIGR00895       179 IAPLLLLLLLM  189 (398)
T ss_pred             hHHHHHHHHHH
Confidence            55554444433

>PRK12382 putative transporter; Provisional

Probab=99.52  E-value=1.4e-12  Score=109.57  Aligned_cols=165  Identities=14%  Similarity=0.021  Sum_probs=117.6

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      ++.++...+..+............+|.++++++|.|+.+.+...+...++..+++++.|+++||+|||+..         
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l---------   84 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA---------   84 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH---------
Confidence            45666777777777777777778889888877999999999999999999999999999999999987422         


Q ss_pred             HHhhhhhHHHHH---Hhhc-----ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHH
Q 022127          190 SIGFIGPGVSLL---CLNY-----AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIIS  260 (302)
Q Consensus       190 ~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~  260 (302)
                      ..+.+...++..   ....     .++.+...+...+.+.+.+...+...+...+..| |+|++++|......+.+..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         85 LQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            233222222211   1111     1233333444444444455445555666677776 889999999999999999999


Q ss_pred             HHHhhhhhccccchhHHHHHHHHH
Q 022127          261 TIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       261 ~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      |.+.+.+.+..| |+..+.+....
T Consensus       165 ~~~~~~l~~~~g-~~~~~~~~~~~  187 (392)
T PRK12382        165 APLGLLLHSHFG-FAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHH
Confidence            999999988876 87766554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.52  E-value=2.5e-12  Score=107.97  Aligned_cols=176  Identities=13%  Similarity=0.096  Sum_probs=117.9

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH-HHHhhhhhhhcccchhhccCCchhHHHHHH
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG-TMAVSGYMAGKASDSLIKAGYSLTLVRKIM  188 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~  188 (302)
                      |.+.+...+..++...........+|.|+++++|.|+.+.|...+...+ +...+.+.+++ .||+|+|+       +.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~-------~~~   85 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK-------SLI   85 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-------HHH
Confidence            5667777788888888888888999999988899999999998766555 45555555666 99999873       222


Q ss_pred             HHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chh--hhHHHHHHHHHHHHHHHHHHHhh
Q 022127          189 QSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCA--GFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~--~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                       ..+.+...+........++.+.......+..+......+.......+..+ +.|  +...+..+...++|..++|.+.+
T Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~  164 (393)
T PRK15011         86 -VFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY  164 (393)
T ss_pred             -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence             23333333334444445555443322222223333444445555566544 333  34457888889999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .+.++.| |+..|++.++..++..+.....
T Consensus       165 ~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        165 ALAMGFS-FTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHhcC-hHHHHHHHHHHHHHHHHHHHhh
Confidence            9998886 9999998887776666554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.52  E-value=1.6e-12  Score=109.50  Aligned_cols=168  Identities=11%  Similarity=0.022  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +....+..+.............|.+.++ +|.|+.+.++..+...++..++.++.|+++||+|||+.        + ..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~--------~-~~~   83 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP--------M-VTS   83 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------H-HHH
Confidence            3455555666666666666667766555 99999999999999999999999999999999997632        2 244


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      .++..++.......++.+.......+.+.+.+...+.......|..| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555555555556666666666666666666677777788888887 88999999999999999999999999988765


Q ss_pred             c-chhHHHHHHHHHHHHHHH
Q 022127          272 G-SFQAFLTVTAGLYFVTTI  290 (302)
Q Consensus       272 g-~~~~~~~~~~~~~~~~~~  290 (302)
                      + +|+..+.+.++..++..+
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALW  183 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHH
Confidence            4 488888876655555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.52  E-value=1.3e-12  Score=112.12  Aligned_cols=162  Identities=11%  Similarity=0.032  Sum_probs=108.5

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      ....+......|.+.+ .+|+|..+.+...+...++..++.++.|+++||+|+|+.        + ..+.+...++.+..
T Consensus        49 ~~~~~~~~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~--------~-~~~~~~~~~~~~~~  118 (476)
T PLN00028         49 FVSTFAAAPLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG--------S-AFLLMLTAPAVFCM  118 (476)
T ss_pred             HHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--------H-HHHHHHHHHHHHHH
Confidence            3333344455555544 499999999999888889999999999999999998632        1 24444445555555


Q ss_pred             hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc----c----ccch
Q 022127          204 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ----W----LGSF  274 (302)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~----~----~g~~  274 (302)
                      ...++.........+.+++.+.. ......+.+..| ++|++++|+.+...++|+.+++.+.+.+.+    .    ..+|
T Consensus       119 ~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW  197 (476)
T PLN00028        119 SLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW  197 (476)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence            55556554444434433333322 233445677777 889999999998888888888776665432    1    1149


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc
Q 022127          275 QAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      +..|.+.+++.++..+...++.
T Consensus       198 r~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        198 RIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            9999998887776665555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.51  E-value=1.8e-12  Score=107.87  Aligned_cols=166  Identities=15%  Similarity=0.066  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      +++...+..+......+....+.|.++++++|.|+.+.++..+...++..++.++.|+++||+|+|+..         ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT---------TL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH---------HH
Confidence            456677777777778888889999878777999999999999999999999999999999999976321         24


Q ss_pred             hhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          192 GFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      +.++..++.......+ +.+.......+.+...+ ..........+..| ++|+++.++.....++|..+++.+.+.+.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5555555555555555 55555444444444333 33445667778777 889999999998888888888877776654


Q ss_pred             c---------ccchhHHH-HHHHHHHHH
Q 022127          270 W---------LGSFQAFL-TVTAGLYFV  287 (302)
Q Consensus       270 ~---------~g~~~~~~-~~~~~~~~~  287 (302)
                      .         ..+|+..+ ...+....+
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHH
Confidence            2         11488877 333444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=8e-13  Score=109.06  Aligned_cols=168  Identities=16%  Similarity=0.111  Sum_probs=134.1

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      ......+.............|.+.++ .|.++.+.+...+...++..++.++.|+++||+|||+..         ..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~---------~~~~~   72 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL---------LLGLL   72 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh---------HHHHH
Confidence            44556666677777788888988877 799999999999999999999999999999999987532         35555


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS  273 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~  273 (302)
                      ...++.......++.+.......+.+.+.+...+.......|..| |+|++..+..+....+|..++|.+.+.+.+..+ 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  151 (352)
T cd06174          73 LFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-  151 (352)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            555555555555666666666666666667777888888899888 789999999999999999999999999998875 


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 022127          274 FQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~  293 (302)
                      |+..+.+.+...++..+...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         152 WRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888877776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=1.9e-12  Score=108.62  Aligned_cols=155  Identities=15%  Similarity=0.031  Sum_probs=123.2

Q ss_pred             HHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc
Q 022127          128 FVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  207 (302)
Q Consensus       128 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (302)
                      ......+|...++ +|.|..+.++..+...++..++.+..|++.||+|+|+.         ...+..+.+++.....+.+
T Consensus        26 ~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~---------l~~~~~l~~~~~~~~~~a~   95 (393)
T PRK09705         26 TSVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS---------VAISLLLIAVGALMRELYP   95 (393)
T ss_pred             hccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH---------HHHHHHHHHHHHHHHHHCc
Confidence            4455667776665 99999999999999999999999999999999997633         2467777777887777888


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  287 (302)
                      +.+.......+.+.+.+...+.......+.+|++|+.++|........|..+++.+.+.+.++..+|+..+...++..++
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            87777777777777777767777777788888889999999999999999999999999988764588877665555444


Q ss_pred             HHHHH
Q 022127          288 TTIFW  292 (302)
Q Consensus       288 ~~~~~  292 (302)
                      .....
T Consensus       176 ~~~~~  180 (393)
T PRK09705        176 ALFAW  180 (393)
T ss_pred             HHHHH
Confidence            43333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.50  E-value=1.4e-12  Score=108.85  Aligned_cols=159  Identities=12%  Similarity=0.115  Sum_probs=122.9

Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      +.......+|.+.++ +|.|+.+.+...+...++..++.++.|+++||+|||+.         ...+..+..++......
T Consensus         6 ~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~---------~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          6 AIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV---------ILGGTLVFALAAVACAL   75 (377)
T ss_pred             HHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH---------HHHHHHHHHHHHHHHHH
Confidence            334455777888877 89999999999999999999999999999999997632         23455555555555555


Q ss_pred             ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Q 022127          206 AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      .++.+.......+.+.+.+...+.......|..| ++|+++.++.+....+|..++|.+.+.+.+..+ |+..+.+.+..
T Consensus        76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~  154 (377)
T PRK11102         76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALA  154 (377)
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHH
Confidence            5666655555556566666666677788888887 789999999999999999999999999998776 99999888777


Q ss_pred             HHHHHHHHHhh
Q 022127          285 YFVTTIFWNLY  295 (302)
Q Consensus       285 ~~~~~~~~~~~  295 (302)
                      .++..+.....
T Consensus       155 ~~~~~~~~~~~  165 (377)
T PRK11102        155 AILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHh
Confidence            77665554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.50  E-value=2.8e-13  Score=113.03  Aligned_cols=165  Identities=11%  Similarity=0.024  Sum_probs=123.7

Q ss_pred             HHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH
Q 022127          120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  199 (302)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (302)
                      ++..+.....+....|.+. +++|.|..+.+++.+...++..++.++.|+++||+|||+..         ..+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~~~~~~   73 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL---------PIGLILCAIV   73 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh---------HHHHHHHHHH
Confidence            3444555556666677544 45999999999999999999999999999999999987543         2455555555


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHH-HhhhhhccccchhHH
Q 022127          200 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI-GTGYFVQWLGSFQAF  277 (302)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~-i~g~l~~~~g~~~~~  277 (302)
                      .++....++.+...+...+.+.+.+...+...+...|..| ++|+++.++.+....+|..++|. +.+.+.+..+ |+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~  152 (379)
T TIGR00881        74 NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWV  152 (379)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhH
Confidence            5555566666666666666666667777888888889888 78999999999999999999994 6666666554 8888


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 022127          278 LTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~  295 (302)
                      +.+.+.+.++..++...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            888777666655544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.49  E-value=2.9e-12  Score=108.08  Aligned_cols=159  Identities=14%  Similarity=-0.000  Sum_probs=115.8

Q ss_pred             HHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc
Q 022127          127 YFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA  206 (302)
Q Consensus       127 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (302)
                      ...+...+|.+.++ +|.|+.+.+...+...++..++.++.|.++||+|||+..         ..+.....++.......
T Consensus        29 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l---------~~~~~~~~~~~~~~~~~   98 (406)
T PRK15402         29 NDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM---------LAGVAFFILTCLAILLA   98 (406)
T ss_pred             hhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH---------HHHHHHHHHHHHHHHHH
Confidence            33444556665555 999999999999999999999999999999999986321         24444445555555555


Q ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHH
Q 022127          207 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  285 (302)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~  285 (302)
                      ++.+.......+.+...+...+.......|..| +++++..++......++..++|.+.+.+.++.+ |+..+++.+++.
T Consensus        99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~  177 (406)
T PRK15402         99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAALA  177 (406)
T ss_pred             ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHH
Confidence            666555555555555555555566677778777 778888999888888999999999999988765 999998888777


Q ss_pred             HHHHHHHHhhc
Q 022127          286 FVTTIFWNLYS  296 (302)
Q Consensus       286 ~~~~~~~~~~~  296 (302)
                      ++..+......
T Consensus       178 ~~~~~~~~~~~  188 (406)
T PRK15402        178 ALSFFGLWRAM  188 (406)
T ss_pred             HHHHHHHHHhC
Confidence            77665544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.49  E-value=2.9e-12  Score=108.24  Aligned_cols=172  Identities=13%  Similarity=0.205  Sum_probs=123.3

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhh-----hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ-----AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRK  186 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  186 (302)
                      .+....+..++..........++|.|.++ +|.+..+     .+...+...+...++.++.|+++||+|||+.       
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------   86 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-------   86 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-------
Confidence            44455666667777777778889999987 8888654     3778888899999999999999999997632       


Q ss_pred             HHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          187 IMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                       + ..+.....+........++.+.......+.+...+ ..+.......+..| ++|+++.|..+....+|..++|.+.+
T Consensus        87 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874         87 -L-LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             -H-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             2 23444444444444445555554444444444333 34445556666666 88999999999999999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .+.+..+ |+..+.+.+++.++..+...++
T Consensus       164 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        164 LLADSYG-LRPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             HHHHHhC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9988776 9999988887777666554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.49  E-value=4.6e-12  Score=106.47  Aligned_cols=169  Identities=12%  Similarity=0.011  Sum_probs=118.8

Q ss_pred             HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhh
Q 022127          116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  195 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  195 (302)
                      ......+...........+|.+.++ +|.|+.+.+...+...++..++.++.|+++||+|||+..         ..+...
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~---------~~~~~~   82 (394)
T PRK11652         13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI---------LVGMSI   82 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH---------HHHHHH
Confidence            3334444444444455566776666 899999999999999999999999999999999986422         234444


Q ss_pred             hHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q 022127          196 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSF  274 (302)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~  274 (302)
                      ..++.......++.+.......+.+.+.+...+.......|..+ ++++.+.+..+....++..++|.+.+.+.+..| |
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~  161 (394)
T PRK11652         83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-W  161 (394)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-h
Confidence            44444444455565555555555554444444455556677666 788999999999999999999999999988776 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 022127          275 QAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +..|.+.++..++..+.....
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        162 RACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999988777665554443333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.48  E-value=4.2e-15  Score=127.64  Aligned_cols=268  Identities=18%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc----------------------CCchHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI----------------------GISGPFILFSSL   58 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------gwr~~f~~~~~~   58 (302)
                      |+...+|+-|..++++-+..+|+..+...+|+++|..+++.+.+.+                      .|...|.+.+.+
T Consensus       159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999998876421                      388888888888


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCh---HHHHH---HHhcCccc--------ccCCCCcchHHhhcCccHHHHHHHHHhhh
Q 022127           59 GLLWLSTWTSKVTNDPCNSPFVSK---SELRL---IQAGKSDS--------VKKRNPPSLRHLLSKLPSWTVIIANITNN  124 (302)
Q Consensus        59 ~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (302)
                      .++..+....+-++-|++++..++   ++++.   .+++..++        ..++.+...+++++||.+....+......
T Consensus       239 ~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~  318 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES  318 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            887777666644444443111100   00000   00000000        11233456778999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHH-HHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHH-HHHH
Q 022127          125 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWG-TMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLC  202 (302)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  202 (302)
                      ....++.++.|.|++.+++.++.+++.+.....+ +.++|.+++|++.+|++-+....   .+.......+.... ....
T Consensus       319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~  395 (539)
T PF03137_consen  319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLF  395 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988765554 67788899999999986543221   12221222221111 0010


Q ss_pred             hhccc-------------------------------------------------chHHHHHHHHHHHHHhhhhhhhhhhH
Q 022127          203 LNYAK-------------------------------------------------SPAVAAVLITIALSLSSFSQAGYLLN  233 (302)
Q Consensus       203 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
                      +..-+                                                 ......+...+..+..+....+....
T Consensus       396 ~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i  475 (539)
T PF03137_consen  396 FLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLI  475 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhee
Confidence            00000                                                 00111222222222333333333333


Q ss_pred             Hhh-hccchhhhHHHHHHHHHH-HHHHHHHHHhhhhhccc
Q 022127          234 IQE-IAPDCAGFLHGIANSAGT-LAAIISTIGTGYFVQWL  271 (302)
Q Consensus       234 ~~~-~~p~~~~~~~g~~~~~~~-~g~~i~~~i~g~l~~~~  271 (302)
                      ... +.+++|+.+.|+...+.+ +|..-+|.+.|.+.|..
T Consensus       476 ~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  476 TLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------------------
T ss_pred             eeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            333 445999999999987766 57889999999999974

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.48  E-value=5.1e-12  Score=105.67  Aligned_cols=150  Identities=9%  Similarity=-0.079  Sum_probs=117.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +.++.+.+..+............+|.+.++ +|.|..+.|+..+...++..++.++.|+++||+|+|+.         ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~---------~~   75 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS---------YY   75 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HH
Confidence            457778888888888888888999999987 89999999999999999999999999999999997632         23


Q ss_pred             HhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          191 IGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .+.++..++.......++.+.......+.+.+.+...+.......+..+ ++|+++.|..+...++|..++|.+.+.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         76 LASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4555555555555566676666665555555555555555555555555 889999999999999999999999999876


Q ss_pred             c
Q 022127          270 W  270 (302)
Q Consensus       270 ~  270 (302)
                      .
T Consensus       156 ~  156 (381)
T PRK03633        156 E  156 (381)
T ss_pred             c
Confidence            5

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.48  E-value=9.7e-13  Score=112.92  Aligned_cols=160  Identities=11%  Similarity=0.007  Sum_probs=114.8

Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHH----
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL----  201 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  201 (302)
                      ....+....|.+.++ +|.|..+.|++.+...++..++.++.|+++||+|+|+...         .+.+..++..+    
T Consensus        44 ~r~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~---------~~~~~~~~~~~~~~~  113 (467)
T PRK09556         44 IRKNFKAAQNDMIST-YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLP---------FLLILSAICMLGFGA  113 (467)
T ss_pred             HhcChhhhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHH---------HHHHHHHHHHHHHHH
Confidence            333455557766655 9999999999999999999999999999999999875431         22222222222    


Q ss_pred             -HhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc--cchhHH
Q 022127          202 -CLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL--GSFQAF  277 (302)
Q Consensus       202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g~~~~~  277 (302)
                       .....++.+.......+.+.+.+...+.....+.+..| ++||+++|+.+...++|.++++.+..++.+..  ++|+..
T Consensus       114 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        114 SLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence             22234566666666666666667777777888888887 78999999999999999999999887776542  247777


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 022127          278 LTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~  295 (302)
                      |.+.++..++..++.+++
T Consensus       194 f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        194 FIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            777666665554444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.47  E-value=7.1e-12  Score=105.78  Aligned_cols=153  Identities=13%  Similarity=0.049  Sum_probs=115.1

Q ss_pred             HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchH
Q 022127          131 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA  210 (302)
Q Consensus       131 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (302)
                      ..-+|...+ .+|.+..+.+...+...++..++.++.|.++||+|||+..         ..+..+..++.......++.+
T Consensus        36 ~p~l~~i~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l---------~~~~~~~~~~~~~~~~a~~~~  105 (413)
T PRK15403         36 QPGIINVVR-DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL---------ITGALIFTLACAATLFTTSMT  105 (413)
T ss_pred             ccCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH---------HHHHHHHHHHHHHHHHcCCHH
Confidence            344455444 4899999999999999999999999999999999987322         244555555555555666766


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          211 VAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      .......+.+.+.+...+.......|..| +++++..++.+....++..++|.+.+.+.++.| |+..|++.++..+++.
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~  184 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            66555555555444444455666778877 778999999999999999999999999988766 9999999888777766


Q ss_pred             HHHHh
Q 022127          290 IFWNL  294 (302)
Q Consensus       290 ~~~~~  294 (302)
                      +....
T Consensus       185 ~~~~~  189 (413)
T PRK15403        185 VGLLL  189 (413)
T ss_pred             HHHHH
Confidence            55443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=7.8e-12  Score=108.35  Aligned_cols=163  Identities=12%  Similarity=0.059  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +..+.+..+.............|.+.++ +|.|+.+.+...+...++..++.++.|+++||+|||+.        + ..+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~-~~~   91 (496)
T PRK03893         22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA--------M-VIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------H-HHH
Confidence            3455555555555555566666765555 99999999999999999999999999999999997632        2 244


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      .++..++.......++.+.......+.+.+.+...+.......|..| ++|+++.++.+...++|..++|.+.+.+.+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            44555555555555666655555556666566666777777888887 88999999999999999999999999999887


Q ss_pred             cchhHHHHHHHHHHH
Q 022127          272 GSFQAFLTVTAGLYF  286 (302)
Q Consensus       272 g~~~~~~~~~~~~~~  286 (302)
                      + |+..|.+.....+
T Consensus       172 ~-w~~~f~~~~~~~~  185 (496)
T PRK03893        172 G-WRALFFIGILPII  185 (496)
T ss_pred             C-HHHHHHHHHHHHH
Confidence            6 9988876544333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.47  E-value=1.2e-11  Score=105.81  Aligned_cols=153  Identities=14%  Similarity=0.069  Sum_probs=102.9

Q ss_pred             HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc----
Q 022127          131 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA----  206 (302)
Q Consensus       131 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  206 (302)
                      ....| ++++. |.|..+.++..+...++..++.++.|+++||+|+|+..         ..+.++.++..+.....    
T Consensus        49 ~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l---------~~~~~~~~i~~~~~~~~~~~~  117 (452)
T PRK11273         49 ALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL---------PAGLILAAAVMLFMGFVPWAT  117 (452)
T ss_pred             HHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH---------HHHHHHHHHHHHHHHhhhccc
Confidence            34555 55665 99999999999999999999999999999999987432         24444444444433332    


Q ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHH-HHHHhhhhhccccchhHHHHHHHHH
Q 022127          207 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAII-STIGTGYFVQWLGSFQAFLTVTAGL  284 (302)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i-~~~i~g~l~~~~g~~~~~~~~~~~~  284 (302)
                      .+.+.......+.+.+.+...+.......+..| ++|+++.|+.+...++|+.+ +|.+...+.... +|+..|++.++.
T Consensus       118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~  196 (452)
T PRK11273        118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFA  196 (452)
T ss_pred             ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence            234444444445555556555666666677666 88999999999999988754 454433333233 599999988777


Q ss_pred             HHHHHHHHHhh
Q 022127          285 YFVTTIFWNLY  295 (302)
Q Consensus       285 ~~~~~~~~~~~  295 (302)
                      .++..++..++
T Consensus       197 ~~~~~~l~~~~  207 (452)
T PRK11273        197 AILVALFAFAM  207 (452)
T ss_pred             HHHHHHHHHHH
Confidence            66655444443

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=1e-11  Score=104.62  Aligned_cols=162  Identities=12%  Similarity=0.043  Sum_probs=110.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      |.+....+..++..........++|.++++ +|.|+.+.+...+...++..++.++.|++.||+|||+..         .
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l---------~   82 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM---------M   82 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH---------H
Confidence            455666777777777777777788888876 899999999999999999999999999999999986322         2


Q ss_pred             HhhhhhHHHHHHh---hcc-cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHH-HHHHHHh
Q 022127          191 IGFIGPGVSLLCL---NYA-KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAA-IISTIGT  264 (302)
Q Consensus       191 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~-~i~~~i~  264 (302)
                      .+..+..++....   ... ++.+.......+.+.+.+...+.......+..| ++|++++|+.+...++|. .++|.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~  162 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS  162 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333332221   222 244433333344333333333444455556555 899999999999999986 5899999


Q ss_pred             hhhhccccchhHHHHHHHH
Q 022127          265 GYFVQWLGSFQAFLTVTAG  283 (302)
Q Consensus       265 g~l~~~~g~~~~~~~~~~~  283 (302)
                      +.+.+..| ++..++....
T Consensus       163 ~~l~~~~g-~~~~~~~~~~  180 (402)
T TIGR00897       163 SYAIPAFG-EMNTLWSALA  180 (402)
T ss_pred             Hhcccccc-hHHHHHHHHH
Confidence            99888776 5444444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.46  E-value=6.5e-12  Score=106.72  Aligned_cols=161  Identities=11%  Similarity=0.032  Sum_probs=119.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +....+..+.............|.+. +++|.|+.+.++..+...++..++.++.|+++||+|||+.         ...+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~---------l~~~   89 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIK-ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL---------MMWS   89 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH---------HHHH
Confidence            34444444444444445555555544 4599999999999999999999999999999999997632         2345


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      .....++.......++.+...+...+.+.+.+...+.......|..| ++|+++.++......+|..+++.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            55555555555566666666666666666666667777778888887 78999999999999999999999999988877


Q ss_pred             cchhHHHHHHHHH
Q 022127          272 GSFQAFLTVTAGL  284 (302)
Q Consensus       272 g~~~~~~~~~~~~  284 (302)
                      + |+..|++....
T Consensus       170 ~-w~~~f~i~~~~  181 (426)
T PRK12307        170 G-WRAAFFVGLLP  181 (426)
T ss_pred             C-HHHHHHHHHHH
Confidence            5 99998875443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=8.7e-12  Score=104.29  Aligned_cols=165  Identities=10%  Similarity=-0.008  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      .+.+.+..+..+........++|.|+++ +|.|..+.|...+...+...++.++.|.++||.+|+...    ++... .+
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~----~~~~~-~~   79 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA----LRLLA-LA   79 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHHH-HH
Confidence            3446666777777777788999999988 899999999999999999999999999999999864221    22221 12


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      ..+...  ......++.+.......+.+.+.+...+...+...+. ++++++..|......++|..++|.+.|.+.++.|
T Consensus        80 ~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g  156 (382)
T TIGR00902        80 SAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD  156 (382)
T ss_pred             HHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111111  1222344555554444444444444455555555443 4778999999999999999999999999999887


Q ss_pred             chhHHHHHHHHHHHH
Q 022127          273 SFQAFLTVTAGLYFV  287 (302)
Q Consensus       273 ~~~~~~~~~~~~~~~  287 (302)
                       |+..|.+.....++
T Consensus       157 -~~~~f~~~~~~~~~  170 (382)
T TIGR00902       157 -EQNILAILTAGLAF  170 (382)
T ss_pred             -hhHHHHHHHHHHHH
Confidence             99888876655333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.45  E-value=1.2e-11  Score=103.81  Aligned_cols=178  Identities=14%  Similarity=0.042  Sum_probs=118.1

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      |.++...+.........+......+.+-++.+|+|+.|.+++.+...+...+.++..|++.||+|.|+..         .
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~---------~  104 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT---------V  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH---------H
Confidence            4566666665555555555556566666646999999999999999999999999999999999986322         2


Q ss_pred             HhhhhhHHHHHHhhcc-----cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          191 IGFIGPGVSLLCLNYA-----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      .+.++..+..+...+.     ++.+...+...+.+.. +..++.....+++.+| ++||++.|+....+++|..+++.+.
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            3444444444444433     4555555555555544 5566777777888888 7799999999777777776665555


Q ss_pred             hhhh-----cccc------------chhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          265 GYFV-----QWLG------------SFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       265 g~l~-----~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      ..+.     +..|            .++.+..+.....++..++.+++.++
T Consensus       184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4432     2111            15666666666666666555554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.44  E-value=4.6e-12  Score=108.22  Aligned_cols=155  Identities=10%  Similarity=0.110  Sum_probs=112.7

Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  209 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
                      +..+.|.+.++ +|.+..+.++..+...+...++.++.|+++||+++|+..         ..+.++..+..+.....++.
T Consensus        38 ~~~~~~~i~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l---------~~~~~~~~~~~~~~~~~~~~  107 (455)
T TIGR00892        38 VTVFFKELQQI-FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV---------IAGGLLASLGMILASFSSNV  107 (455)
T ss_pred             hhhhHHHHHHH-hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH---------HhhHHHHHHHHHHHHHhhhH
Confidence            44567766665 899999999999998888899999999999999987422         24444444455555555555


Q ss_pred             HHHHHHH-HHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q 022127          210 AVAAVLI-TIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT  288 (302)
Q Consensus       210 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  288 (302)
                      +...... .+.+.+.+...++......+.+|++|+++.|+.+....+|..++|.+.+.+.+..| |+..|++.+++.++.
T Consensus       108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~  186 (455)
T TIGR00892       108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHC  186 (455)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            4433222 33333344434455566677778889999999999999999999999999998876 999999998877766


Q ss_pred             HHHHHhh
Q 022127          289 TIFWNLY  295 (302)
Q Consensus       289 ~~~~~~~  295 (302)
                      .+..++.
T Consensus       187 ~v~~~~~  193 (455)
T TIGR00892       187 CVCGALM  193 (455)
T ss_pred             HHHHHHh
Confidence            5544444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.44  E-value=6.8e-12  Score=105.49  Aligned_cols=176  Identities=12%  Similarity=0.036  Sum_probs=116.5

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      ||.+|......++.+.+......++|.|+++++|.|+.+.+...+...+...++.+..|+++||+|||+..       +.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~-------~~   73 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL-------LW   73 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-------HH
Confidence            57889999999999999999999999999988999999999999999999999999999999999987432       11


Q ss_pred             H-HhhhhhHHHHHHhhcccc----hHH-HHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 022127          190 S-IGFIGPGVSLLCLNYAKS----PAV-AAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIG  263 (302)
Q Consensus       190 ~-~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i  263 (302)
                      . ....+...........+.    ... ......+.+...+...+.......+.. ++++...|......++|..++|.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~  152 (396)
T TIGR00882        74 IISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASI  152 (396)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHH
Confidence            1 111111111111111111    111 111111222222323333333333332 334556778888889999999999


Q ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          264 TGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       264 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .|.+.+. + |+..|++.+.+.++..++.+..
T Consensus       153 ~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       153 AGILFSI-D-PQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             Hhhhhcc-C-chHHHHHHHHHHHHHHHHHHHh
Confidence            9988764 4 8899988877777665554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.43  E-value=1.5e-11  Score=105.66  Aligned_cols=186  Identities=15%  Similarity=0.133  Sum_probs=138.8

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      .-+|||.+..+.......+.+......-.+-++.+ ..-|+...++......+...+.++++|.++||+.||+...... 
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~-   82 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ-   82 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-
Confidence            35789999999999999888888887777777766 5678999999999999999999999999999999875432100 


Q ss_pred             HHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          186 KIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                       .+  .......+..+......+.+..+...++.+.+..+..|..++.+.++.| ++...++++.+...++...+||.++
T Consensus        83 -~~--~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   83 -LL--RALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             -HH--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence             00  0011111111112222356666666677777788888999999999988 7889999999999999999999999


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          265 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       265 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      |.+....| ....|.+-++..++........++
T Consensus       160 G~Lva~~G-~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  160 GILVAFFG-AAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccc
Confidence            99998876 777888877777666555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=1.5e-11  Score=102.90  Aligned_cols=161  Identities=13%  Similarity=0.035  Sum_probs=113.1

Q ss_pred             HHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHH
Q 022127          120 NITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  199 (302)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (302)
                      .+....+......++|.|+++ +|.|..+.|...+...+...++.++.|.++||++|+...    ++.+... ....  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~----~~~~~~~-~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA----LRLLALL-TLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH----HHHHHHH-HHHH--H
Confidence            555556667778899999988 899999999999999999999999999999999985221    2222211 1111  1


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Q 022127          200 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  279 (302)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  279 (302)
                      .......++.+.......+.+.+.+...+...+...+. +++++++.|......++|..++|.+++.+.++.| |+..|+
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~  162 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILW  162 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHH
Confidence            22222234555544444444444555555555555554 4567888888888999999999999999999887 999988


Q ss_pred             HHHHHHHHHHH
Q 022127          280 VTAGLYFVTTI  290 (302)
Q Consensus       280 ~~~~~~~~~~~  290 (302)
                      +.++..++..+
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK11128        163 ILTAGVASMLL  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            77765554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.41  E-value=5.2e-12  Score=106.17  Aligned_cols=258  Identities=16%  Similarity=0.116  Sum_probs=181.3

Q ss_pred             hhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 022127            3 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK   82 (302)
Q Consensus         3 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (302)
                      ...++++|....++|....|+.+.....+..++|.+++.+.+..|.-..|.+..+..++..+.....+||+-.+++..+.
T Consensus       132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~  211 (463)
T KOG2816|consen  132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA  211 (463)
T ss_pred             hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc
Confidence            46788999999999999999999999999999999999999999999999999998888888888888886554332210


Q ss_pred             HHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHh-hhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           83 SELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLS-WMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                      ..++........+...+.....++.-.+|..+.+.+..+........-.. ..+.|++..+++++.+.+.+.+.......
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~  291 (463)
T KOG2816|consen  212 TLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGI  291 (463)
T ss_pred             cccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHH
Confidence            00000000000000000111111222345566656665555554443222 45778888899999999999998888899


Q ss_pred             hhhhhhh-cccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-
Q 022127          162 VSGYMAG-KASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-  239 (302)
Q Consensus       162 ~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  239 (302)
                      ++..+.. .+...++.++         ....++..-.+......+.++.|.......+. .......+...+..+...+ 
T Consensus       292 i~~l~~~~~l~~~l~~~~---------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~  361 (463)
T KOG2816|consen  292 ISQLLLLPLLSSILGEKR---------LISLGLLSEFLQLLLFAFATETWMMFAAGVVV-ALAGIVFPAIRAFASILVSP  361 (463)
T ss_pred             HHHHHHHHHHHHHHhhhh---------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHH-HhhcchhHHHHhHHHhhccc
Confidence            9887666 6666777542         33577777777777777777776644443333 3455566777777777665 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      +++|++.++...+..+.+.++|.+.+.+...
T Consensus       362 ~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  362 EEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             ccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999988643

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.41  E-value=3.2e-11  Score=100.02  Aligned_cols=159  Identities=14%  Similarity=0.025  Sum_probs=121.3

Q ss_pred             HhhhhHHHHHhhccchhh-hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch
Q 022127          131 LSWMPIYFNTVFNVNLKQ-AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  209 (302)
Q Consensus       131 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
                      ..+...++.+.+|++..+ .|.+.+....+..+..+.+|+++||+|.|+         ++..+.+...+...+..+.++.
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~---------vL~l~~l~Wsl~t~L~~fa~Sl  115 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP---------VLVLQALSFVCVWLLLLLGTSV  115 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            344444666679999999 999999999999999999999999999753         2235566666666666666666


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc--chhHHHHHHHHHHH
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG--SFQAFLTVTAGLYF  286 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~  286 (302)
                      ....+.-++.+.+.+... ....++...+| ++|++++|..+....+|.++++++.+++. ..|  +|....++..+...
T Consensus       116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~~  193 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHH
Confidence            666677777777777766 77777777777 99999999999999999999999999944 444  24445566666677


Q ss_pred             HHHHHHHhhccCcc
Q 022127          287 VTTIFWNLYSTGER  300 (302)
Q Consensus       287 ~~~~~~~~~~~~~~  300 (302)
                      ++.++.+++++.+|
T Consensus       194 ~a~~~a~~LP~~~~  207 (511)
T TIGR00806       194 FSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHhCCCCch
Confidence            77777777765544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.41  E-value=1.2e-11  Score=107.18  Aligned_cols=177  Identities=18%  Similarity=0.190  Sum_probs=132.7

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-------------------CCchHHHHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------------------GISGPFILFSSLGLL   61 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------------gwr~~f~~~~~~~~~   61 (302)
                      +|-..+|+-|...+++-+..+|+..+...+|+++|-++++++.+.+                   .|..-|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999999999999999987532                   388888888888888


Q ss_pred             HHHHHHhhhcCCCCCCCCCChHHHHHHHhcCc--cccc------CCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhh
Q 022127           62 WLSTWTSKVTNDPCNSPFVSKSELRLIQAGKS--DSVK------KRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  133 (302)
Q Consensus        62 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
                      ..+..+++-++.|++.++.+.++.+....+.+  ++++      ++.+...+++++||.+....+...+....+.++.++
T Consensus       335 ~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tF  414 (735)
T KOG3626|consen  335 SAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITF  414 (735)
T ss_pred             HHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHh
Confidence            87777665444444332211111111111111  0100      122345678899999999999999999999999999


Q ss_pred             hhHHHHHhhccchhhhhHHhhHHH-HHHHhhhhhhhcccchhhcc
Q 022127          134 MPIYFNTVFNVNLKQAAWFSAVPW-GTMAVSGYMAGKASDSLIKA  177 (302)
Q Consensus       134 ~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~  177 (302)
                      +|.|+++++|.++..+..+..... .+..+|.+++|++..|+.-+
T Consensus       415 lPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  415 LPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             hHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999999885554 45667778999999998655

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.38  E-value=6.7e-11  Score=99.69  Aligned_cols=167  Identities=11%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchh-----hccCCchhHHHHHHHH
Q 022127          116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-----IKAGYSLTLVRKIMQS  190 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~~~~~~~~~~~  190 (302)
                      ....++.+.........-+|.|+++ .|+|.++.|++......  .+..+++|.++||+     |||       |+++ .
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-------r~~l-~   72 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-------RGWL-L   72 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-------hhHH-H
Confidence            3455666677777777889999999 69999999998665544  58889999999999     655       2222 3


Q ss_pred             HhhhhhHHHHHHhhcc---cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 022127          191 IGFIGPGVSLLCLNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGY  266 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~  266 (302)
                      .+....+++...+...   .+.+.......+...+.....+...+...|..| |+|+++.++.....++|..+++.+.+.
T Consensus        73 ~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902         73 LTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4444444344333333   233333333334445556666777888888888 779999999999999999999999999


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          267 FVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       267 l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      +.+...+|+..|++.++..++..+...
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~~~l~~~  179 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLAGALTTL  179 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            988643499999988877766555433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.38  E-value=8.7e-11  Score=98.94  Aligned_cols=170  Identities=12%  Similarity=0.042  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      ++.+....+.............|.+ ++++|.|..+.++..+...++..++++..|++.||+|+|+.         ...+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~---------~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG---------ILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH---------HHHH
Confidence            4455555555555555555777766 55599999999999999999999999999999999997632         2355


Q ss_pred             hhhhHHHHHHhhc---ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          193 FIGPGVSLLCLNY---AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       193 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      ..+.+++......   .++.+.......+.+.+.+...+..+....+..| +++++..++.+...++|..++|.+.+.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544322   2355555556666666777777777777777777 77899999999999999999999998875


Q ss_pred             ccc-------------------------cchhHHHHHHHHHHHHHHHHH
Q 022127          269 QWL-------------------------GSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       269 ~~~-------------------------g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      ...                         .+|+.+|.+.+++.++..++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321                         138888888777666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.36  E-value=2e-11  Score=101.16  Aligned_cols=148  Identities=16%  Similarity=0.070  Sum_probs=107.8

Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  209 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
                      ....+|.+.++ +|.|+.+.++..+...++..++.+..|+++||+|+|+..         ..+.....++.... ..++.
T Consensus        19 ~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        19 VGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV---------AAGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             CcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH---------HHHHHHHHHHHHHH-HhccH
Confidence            44567776666 899999999999999999999999999999999987432         23333333333333 34455


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc-hhHHHHHHHHHHHHH
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS-FQAFLTVTAGLYFVT  288 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~-~~~~~~~~~~~~~~~  288 (302)
                      +.......+.+.+.+...+.......+..|++|+++.|..+...++|..+++.+.+.+.+..+. |+..|...++..++.
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            5444444445555555455556667788888899999999999999999999999998876543 888887766554444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=99.35  E-value=1.7e-10  Score=98.09  Aligned_cols=147  Identities=12%  Similarity=0.006  Sum_probs=110.8

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      .+..+.+..+...+.........|.+ ++.+|.|+.+.++..+...++..++.+..|++.||+|+|+.         +..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~---------l~~   96 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG---------IIT   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---------HHH
Confidence            34555666666666777777888887 66699999999999999999999999999999999997632         234


Q ss_pred             hhhhhHHHHHHh---hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          192 GFIGPGVSLLCL---NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       192 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      +..+..++.+..   ...++.........+.+.+.+...+..+....+..| +++....+..+....+|..++|.+++.+
T Consensus        97 g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133         97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554432   345566666666677777777777777777778777 4455678999999999999999887765


Q ss_pred             h
Q 022127          268 V  268 (302)
Q Consensus       268 ~  268 (302)
                      .
T Consensus       177 ~  177 (438)
T PRK10133        177 I  177 (438)
T ss_pred             H
Confidence            4

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=2e-10  Score=99.02  Aligned_cols=179  Identities=13%  Similarity=0.067  Sum_probs=127.8

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchh-----hccCCc
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-----IKAGYS  180 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~  180 (302)
                      +..++|+.+.+....+............+|.++++ .|.|..+.+.... ..... ++.+++|.++||+     |||+  
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~Grrr--   81 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLGRRR--   81 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCCCch--
Confidence            34566777778888888888888888889999988 6999999988632 23332 5789999999999     6652  


Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHhhcc---cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHH
Q 022127          181 LTLVRKIMQSIGFIGPGVSLLCLNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLA  256 (302)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g  256 (302)
                           .++ ..+.+...++.....+.   ++.+.......+..++.+...+...+...|..| ++|+++.++......+|
T Consensus        82 -----~~l-l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG  155 (491)
T PRK11010         82 -----GWL-LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA  155 (491)
T ss_pred             -----HHH-HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence                 222 24444443443333232   234444444455555566666777888889887 88999999999999999


Q ss_pred             HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          257 AIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       257 ~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ..+++.+.+.+.++..+|+..|++.++..++..+..+..
T Consensus       156 ~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~  194 (491)
T PRK11010        156 MLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA  194 (491)
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998843249999999888777665554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.35  E-value=8.7e-11  Score=111.60  Aligned_cols=184  Identities=11%  Similarity=-0.007  Sum_probs=120.9

Q ss_pred             HHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHH----HHHhhccc-hhhhhHHhhHHHHHHHhhhhhhhcccchhhccCC
Q 022127          105 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY----FNTVFNVN-LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY  179 (302)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  179 (302)
                      +++++++++..+....++.....+....-++.+    +.+..+.+ ....++..+...+...+.++++|+++||++||+.
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~   84 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence            456788888777777666665544332222222    22212221 2446777778889999999999999999998742


Q ss_pred             chhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHH
Q 022127          180 SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~  258 (302)
                      .     +.+............. ....++.+..++..++.+.+.++..+...+.+.+..| ++++.++|+.++..++|..
T Consensus        85 ~-----~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~  158 (1140)
T PRK06814         85 A-----KILKFAEIGIAALAIY-GFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL  158 (1140)
T ss_pred             H-----HHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence            1     1111111111111121 1223566666777777777778888888999999887 8899999999999999999


Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +||.++|++.+..+ |+..|.......+++.++...+
T Consensus       159 igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (1140)
T PRK06814        159 LGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFI  194 (1140)
T ss_pred             HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999998875 8888755545445444444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.34  E-value=6.8e-11  Score=101.82  Aligned_cols=139  Identities=14%  Similarity=-0.034  Sum_probs=100.9

Q ss_pred             hhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc---ccchHHHHHHHHHHHHH
Q 022127          146 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---AKSPAVAAVLITIALSL  222 (302)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  222 (302)
                      ..+.++..+...++..++.++.|+++||+|||+.        + ..+..+..++..+...   ..+.+..++...+.+.+
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  140 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS--------L-LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG  140 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH--------H-HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            7899999999999999999999999999997632        2 2333334444333322   22333445555556666


Q ss_pred             hhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          223 SSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT---GYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       223 ~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      .+...+.......|..| ++|+++.++.+....+|..+++.+.   +...+..+ |+..|.+.+...++..+...+
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~  215 (481)
T TIGR00879       141 VGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFF  215 (481)
T ss_pred             hhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhc
Confidence            66667777788888887 8899999999999999999999998   66555554 999999866665555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.34  E-value=1.8e-10  Score=97.50  Aligned_cols=178  Identities=11%  Similarity=0.044  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccch----hhccCCchhHHHHHH
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS----LIKAGYSLTLVRKIM  188 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~~  188 (302)
                      +..+....+..++++.....+.+.|+++ +|.++...+.......+...+..++.|+++||    +|||+        ..
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr--------p~   76 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR--------PF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH--------HH
Confidence            3455555666677777777888888877 99999999999999999999999999999995    88763        33


Q ss_pred             HHHhhhhhHHHHHHhhcccch-----------------HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chh--hhHHHH
Q 022127          189 QSIGFIGPGVSLLCLNYAKSP-----------------AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCA--GFLHGI  248 (302)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~--~~~~g~  248 (302)
                      +..+.....+.+.++.+.++.                 +..+..+.+..+......++..+++.|..| ++|  +.+.+.
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            334444445555555443321                 122233333444556666777888999888 443  679999


Q ss_pred             HHHHHHHHHHHHHHHhhhh--hccc------------cchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          249 ANSAGTLAAIISTIGTGYF--VQWL------------GSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       249 ~~~~~~~g~~i~~~i~g~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      .+...++|+.+++.+.+..  .+..            .+++..|++.+++.+++.++..+..+|+
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            9999999999999998865  1111            1478899998888888877776665553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.34  E-value=3.1e-11  Score=85.81  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=99.5

Q ss_pred             hhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhh
Q 022127          153 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  232 (302)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (302)
                      .+...++..++.+..|++.||+++|+..         ..+.....+........++.+.......+.+...+...+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVL---------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHH---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455678888999999999999876321         2343344444444444556555555556666666666777778


Q ss_pred             HHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          233 NIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       233 ~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ...|..| ++|++..++.+...+++..++|.+.+.+.+..+ |+..+.+.+...+++.+....+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCC
Confidence            8888887 889999999999999999999999999998765 888888888777777666555544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6.8e-13  Score=107.87  Aligned_cols=177  Identities=10%  Similarity=0.008  Sum_probs=142.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      ...+.+.....+.-.+.+...++. .++.+|.++...|++.....+...+.++++|++.||+.|+++.         .++
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~---------~vG  104 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI---------AVG  104 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE---------eeH
Confidence            344455555555555555544433 3445899999999999999999999999999999999876543         466


Q ss_pred             hhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          193 FIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      ..+-.++.+...+....|...++-.+.+.+.....+...+.+.|.+| ++|++..++.+....+|+.+|-...+.+.+..
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            66666666666666677777777778888888888899999999999 88999999999999999999999999999988


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          272 GSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       272 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      +.|+++|...+++.++..++..++.++.
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            8899999999999888887776665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.3e-10  Score=93.95  Aligned_cols=175  Identities=18%  Similarity=0.177  Sum_probs=121.0

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      +++...+..... +..+.+..-+...+++++|+|+.|.+++.+...+.+.+.+++.|.+.||+|.|++.         ..
T Consensus        15 ~L~~S~~af~v~-F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~---------~~   84 (417)
T COG2223          15 NLWLSTLAFDVG-FMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT---------IL   84 (417)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH---------HH
Confidence            344444433333 33334333344444566999999999999999999999999999999999987543         24


Q ss_pred             hhhhhHHHHHHhhccc---chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          192 GFIGPGVSLLCLNYAK---SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      +.++..+..+...+..   +.+..+ ...+..+..|.........+++.+| |++|.+.|+.. .+|+|..+...+...+
T Consensus        85 s~~l~~IP~~~~~~a~~~~~~~~ll-~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          85 SMLLLLIPCLGLAFAVTYPSTWQLL-VIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHH-HHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            4444444444444332   222322 2333334455566777778888888 88999999999 9999999999999988


Q ss_pred             hccccc--hhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          268 VQWLGS--FQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       268 ~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      ....|.  |+.+..+.....++..+..++..++
T Consensus       163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            887763  8888888888888777776665544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=1.7e-10  Score=98.39  Aligned_cols=172  Identities=16%  Similarity=0.110  Sum_probs=112.5

Q ss_pred             hhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHH
Q 022127          122 TNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLL  201 (302)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (302)
                      ...........+++.|+.+.+|.|+.+.|.+.+...+...+..++.|+++||.++|.-.    ||..+..+....+++..
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr----rr~~i~~~~~~~~i~~~   85 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGK----FRPWLLIGAIPFSIVLV   85 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCC----cchhHHHhHHHHHHHHH
Confidence            34445556678889999988999999999999999999999999999999996544221    23333455555554444


Q ss_pred             Hhhcccc------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhc--cchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc---
Q 022127          202 CLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIA--PDCAGFLHGIANSAGTLAAIISTIGTGYFVQW---  270 (302)
Q Consensus       202 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~---  270 (302)
                      .+...++      .........+...+......+..+...|..  +++|++..+..+....+|+.+++.+.+.+...   
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~  165 (437)
T TIGR00792        86 LLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG  165 (437)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4443332      112222223333334444455566666764  37899999998888888888777766655431   


Q ss_pred             ---ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          271 ---LGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       271 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                         ..+|+..+.+.+++.++..+......+
T Consensus       166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  195 (437)
T TIGR00792       166 GDDKFGWFMFALVLALIGVVSLIICFFGTK  195 (437)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence               114888888877777666655444433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.30  E-value=4.7e-11  Score=102.63  Aligned_cols=147  Identities=13%  Similarity=0.093  Sum_probs=110.7

Q ss_pred             hhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHH
Q 022127          141 VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITI  218 (302)
Q Consensus       141 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  218 (302)
                      +++++..+.|.+.+...++..++.++.|++.||+|+|+..         ..+.++..+...+...  ..+....++.-.+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  140 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI---------GIGMFLSSVISIVIPWAAGGGIALVVFCRVI  140 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh---------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4789999999999999999999999999999999987532         2333333333333222  2233444445555


Q ss_pred             HHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          219 ALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .+.+.+...+.......+..| ++|+++.|+.+...++|..++|.+.+.+.+...+|+..|++.++..++..++++.+.
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence            566667777777888889888 899999999999999999999999999988742399999998887776665555443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.29  E-value=2.7e-10  Score=94.42  Aligned_cols=162  Identities=15%  Similarity=0.044  Sum_probs=107.8

Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--  207 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  207 (302)
                      .....|.+.++ .|+|..+.+..... .+...+ .++.|.++||++.|+...   ||.++..+.+..++....+.+.+  
T Consensus         7 ~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Gr---r~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         7 VGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGR---RRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             HHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCc---cHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            44567778887 89999999998644 444444 889999999984321110   23333344444444433333332  


Q ss_pred             -chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc-------hhHHH
Q 022127          208 -SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS-------FQAFL  278 (302)
Q Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~-------~~~~~  278 (302)
                       +.+.......+.........+...+.+.|..| |+|+.+.|+.....++|..+++.+.+.+.+..|.       |+..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence             22223333333444455556677788888887 8899999999999999999999999998877652       89999


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 022127          279 TVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~  297 (302)
                      .+.++..++..+..++..+
T Consensus       161 ~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            8888877776555443333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.29  E-value=2.9e-10  Score=97.88  Aligned_cols=175  Identities=15%  Similarity=0.065  Sum_probs=119.4

Q ss_pred             hcCccHHHHHHHHHhhhHHHHHH----HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhH
Q 022127          108 LSKLPSWTVIIANITNNWGYFVL----LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL  183 (302)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  183 (302)
                      +++++++..+....+.....+..    ...++...++ .|-+ ....++.....++..++.++.|+++|.+|||      
T Consensus        37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------  108 (599)
T PF06609_consen   37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------  108 (599)
T ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch------
Confidence            45667665554444433332222    2334444444 7755 5667777888899999999999999999965      


Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHH
Q 022127          184 VRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI  262 (302)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~  262 (302)
                         .+.+.+.++..++.+.....++....+....+.+.+.+... .....++|+.| |.|..+.++.....-....++|.
T Consensus       109 ---~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~  184 (599)
T PF06609_consen  109 ---YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPL  184 (599)
T ss_pred             ---HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH
Confidence               34457777888888888888888777777777766555443 34555788888 88988777666554445556777


Q ss_pred             HhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          263 GTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       263 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +...+..+. +||+.|++..+...++.+...++
T Consensus       185 ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  185 IAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHhccCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence            776665554 59999999888877776654433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.27  E-value=8.1e-11  Score=97.22  Aligned_cols=183  Identities=10%  Similarity=0.132  Sum_probs=144.5

Q ss_pred             HHhhcCc-cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhc----cchhhhhHHhhHHHHHHHhhhhhhhcccchh-hccC
Q 022127          105 RHLLSKL-PSWTVIIANITNNWGYFVLLSWMPIYFNTVFN----VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAG  178 (302)
Q Consensus       105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~  178 (302)
                      +..+++| .++.+...-+..-+++|++...+..|+....+    +|++++.-+.+.+..-.-+..+++|+++||+ |+| 
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~-   92 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR-   92 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh-
Confidence            3455654 57788888899999999999999999988888    9999988888887777778889999999996 543 


Q ss_pred             CchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc---hhhhHHHHHHHHH
Q 022127          179 YSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPD---CAGFLHGIANSAG  253 (302)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~g~~~~~~  253 (302)
                             +.+ ..+.++..++.+.+....  ......+.+.+...+.|..-+...+...|..|+   +|-.+.++..+..
T Consensus        93 -------~tI-~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~i  164 (498)
T COG3104          93 -------RTI-VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGI  164 (498)
T ss_pred             -------HHH-HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEe
Confidence                   222 366666677776666653  344444555555567778788888888887762   3677888889999


Q ss_pred             HHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          254 TLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       254 ~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      |+|+.++|.+.+++.+..| |+..|...++-..++.+.+++.++
T Consensus       165 NiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         165 NIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             ehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999987 999999999999999988877664

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.26  E-value=6.7e-11  Score=104.48  Aligned_cols=155  Identities=12%  Similarity=0.050  Sum_probs=110.1

Q ss_pred             hhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc----
Q 022127          132 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK----  207 (302)
Q Consensus       132 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  207 (302)
                      ..++. ++++++++..+.|++.+...++..++.++.+++.||.+||+...         ++.++.+++.++....+    
T Consensus        54 ~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~---------~g~ll~~lg~ll~alphf~~~  123 (633)
T TIGR00805        54 SSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIG---------IGCAIMGLGSFLLSLPHFLSG  123 (633)
T ss_pred             hhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEE---------ecHHHHHHHHHHHhChHHhcC
Confidence            33444 45559999999999999999999999999999999999886542         34444444443332211    


Q ss_pred             ---------------------------------------------c--hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-
Q 022127          208 ---------------------------------------------S--PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-  239 (302)
Q Consensus       208 ---------------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  239 (302)
                                                                   +  ....++.-.+.+.+.+...+...+++.|..| 
T Consensus       124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~  203 (633)
T TIGR00805       124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS  203 (633)
T ss_pred             CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence                                                         0  1123334445555555556666788888887 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc---------------------cchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL---------------------GSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ++|+...|+.+....+|..+|+.+++.+.+..                     |.|+..|++.+++.++..+.++.+.
T Consensus       204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            88999999999999999999999999987542                     2366778888777776665555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.26  E-value=1.1e-10  Score=95.89  Aligned_cols=177  Identities=11%  Similarity=0.071  Sum_probs=114.6

Q ss_pred             hcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHH
Q 022127          108 LSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI  187 (302)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  187 (302)
                      .||+++|......++.++.......+.|.+++++.|+|.++.|.+.+...+...+.+++.|.++||++.||.       .
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~-------L   76 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH-------L   76 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH-------H
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH-------H
Confidence            467889999999999999988899999999998899999999999999999999999999999999998853       2


Q ss_pred             HHHHhhhhhHHH-HHHhhcc----cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhc---cchhhhHHHHHHHHHHHHHHH
Q 022127          188 MQSIGFIGPGVS-LLCLNYA----KSPAVAAVLITIALSLSSFSQAGYLLNIQEIA---PDCAGFLHGIANSAGTLAAII  259 (302)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g~~~~~~~~g~~i  259 (302)
                      +..+..+....+ .+...+.    .+.   .....+++...+....+.........   .++.+.-+|=....+++|.++
T Consensus        77 l~~i~~l~~l~~pff~~v~~pll~~n~---~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   77 LWFIAILLLLFGPFFIYVFGPLLQSNF---WLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             HHHHHHHHHTCHHHHHHTHHHHHHTT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHH
Confidence            222222221111 1111111    122   22223333333443443333332222   244566678888999999999


Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          260 STIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       260 ~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      +..+.|.+.+. + ....|++.....++..++....+
T Consensus       154 ~s~~~G~L~~i-~-p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  154 ASLLAGILFNI-N-PNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             HHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHHhheeeee-C-ccHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999875 2 46677766655555444444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.26  E-value=5.4e-10  Score=106.51  Aligned_cols=156  Identities=12%  Similarity=0.004  Sum_probs=110.5

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccch--hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL--KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL  183 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  183 (302)
                      +.++++.++.+.+..++...........+..++.+.++.+.  ...++..+...++..++++++|+++||+|||+..   
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l---   80 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI---   80 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence            45677788877777777666665555445545544455543  3457778888899999999999999999976321   


Q ss_pred             HHHHHHHHhhhhhHHH---HHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHH
Q 022127          184 VRKIMQSIGFIGPGVS---LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAII  259 (302)
Q Consensus       184 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i  259 (302)
                            ..+.++..+.   ..+....++.+...+..++.+.+.+...+...+++.+..| ++|++++|+.....++|..+
T Consensus        81 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l  154 (1146)
T PRK08633         81 ------RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA  154 (1146)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH
Confidence                  2222221111   1222223455555666666667777777888888999887 88999999999999999999


Q ss_pred             HHHHhhhhhcc
Q 022127          260 STIGTGYFVQW  270 (302)
Q Consensus       260 ~~~i~g~l~~~  270 (302)
                      ++.+++++.+.
T Consensus       155 g~~l~~~l~~~  165 (1146)
T PRK08633        155 GTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>PTZ00207 hypothetical protein; Provisional

Probab=99.25  E-value=1e-09  Score=94.95  Aligned_cols=158  Identities=11%  Similarity=0.009  Sum_probs=104.1

Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      ..+.+..+.|.. ++.+|+|..+.+.+.+... ......++.|++.||+|+|+.         ..++.+...++.++...
T Consensus        42 ~~y~fsv~s~~L-~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~v---------llig~ll~~iG~ll~al  110 (591)
T PTZ00207         42 FMYAFNLISGAM-QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPI---------FVLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHH---------HHHHHHHHHHHHHHHHH
Confidence            344556666654 5559999999998876633 334566678999999997532         23555555555555544


Q ss_pred             c------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Q 022127          206 A------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLT  279 (302)
Q Consensus       206 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  279 (302)
                      .      .+.+...+...+.+.+.+...+.......+.+|++||.+.|+......+|+++.+.+...+.+.  +++..|+
T Consensus       111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        111 TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            3      3455555555555555555556666667778899999999999999999998655544444432  3667777


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 022127          280 VTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       280 ~~~~~~~~~~~~~~~~~  296 (302)
                      +.++..++..++...+.
T Consensus       189 ~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        189 FLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHhhe
Confidence            77766666555554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.25  E-value=3.3e-10  Score=97.83  Aligned_cols=144  Identities=13%  Similarity=0.054  Sum_probs=101.9

Q ss_pred             ccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc---------cc---hH
Q 022127          143 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA---------KS---PA  210 (302)
Q Consensus       143 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~  210 (302)
                      +.+..+.++..+...++..++.++.|+++||+|||+..         ..+..+..++.+.....         ++   ..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~---------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL---------KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVP  121 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH---------HHHHHHHHHHHHHHHhhccccccccccchhHHH
Confidence            78889999999999999999999999999999987432         23333333332222211         11   22


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh--------ccccchhHHHHHH
Q 022127          211 VAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV--------QWLGSFQAFLTVT  281 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~--------~~~g~~~~~~~~~  281 (302)
                      ..++.-.+.+.+.+...+...+++.|..| ++|+++.++.+....+|..+++.+.+.+.        +..| |+..|++.
T Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~  200 (479)
T PRK10077        122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASE  200 (479)
T ss_pred             HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHH
Confidence            33445566667777777888888899888 88999999999999999998887765543        2334 99999887


Q ss_pred             HHHHHHHHHHHHhhc
Q 022127          282 AGLYFVTTIFWNLYS  296 (302)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (302)
                      ++..++..+...+++
T Consensus       201 ~~~~~~~~~~~~~l~  215 (479)
T PRK10077        201 AIPALLFLMLLYFVP  215 (479)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            777766655444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=3.4e-11  Score=96.24  Aligned_cols=147  Identities=16%  Similarity=0.078  Sum_probs=126.4

Q ss_pred             hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q 022127          142 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALS  221 (302)
Q Consensus       142 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
                      .+.+..+.|++.....+...+.+++.|.+.||+|.|.         .+.+++.......+++.+.++.+...+.-.+-+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i---------pm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI---------PMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhcccc---------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence            4456688999999999999999999999999999653         3357888888888888888888877777888888


Q ss_pred             HhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          222 LSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       222 ~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +..+......+++.+.+|  ++|++++|+.-.+..+|-.+||.++|.++|..| +...|.+.+.++++-..+.++..++
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCc
Confidence            888888888999999988  357999999999999999999999999999987 9999999999998888776665543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=2.4e-09  Score=91.16  Aligned_cols=161  Identities=14%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             HHHHhhhHHHHHHHhhhhHHHHHhhc---cchhh---hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          118 IANITNNWGYFVLLSWMPIYFNTVFN---VNLKQ---AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      +..++...-...+....| ++.++++   .+..+   .+...+...++..+++++.|+++||+|||+.         +..
T Consensus        29 ~~~~~~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~---------l~~   98 (432)
T PRK10406         29 SGNLVEWFDFYVYSFCSL-YFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS---------MLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---------HHH
Confidence            334444444444444444 4444453   44443   3334455566667999999999999998632         235


Q ss_pred             hhhhhHHHHHHhhcccch--------HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHH
Q 022127          192 GFIGPGVSLLCLNYAKSP--------AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI  262 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~  262 (302)
                      +.....++.......++.        ......-.+.+.+.+...+...+++.|..| ++|+...++.......|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444432        234444555666666677888888899887 88999999888777777777776


Q ss_pred             Hhhhhh--------ccccchhHHHHHHHHHHHHHH
Q 022127          263 GTGYFV--------QWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       263 i~g~l~--------~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      +...+.        +..| |+..|.+.++..++..
T Consensus       179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~  212 (432)
T PRK10406        179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVAL  212 (432)
T ss_pred             HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHH
Confidence            655443        1344 9999998777665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.21  E-value=2e-10  Score=97.14  Aligned_cols=282  Identities=13%  Similarity=0.103  Sum_probs=158.2

Q ss_pred             hhhhcccC--ccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127            6 TLTSRWFP--SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS   83 (302)
Q Consensus         6 ~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   83 (302)
                      +++.|...  +++||...+.......+|.+++..++|.+.+..++|..|.+.+.+..+..+...+..+|+++..+. +  
T Consensus       109 a~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~-~--  185 (433)
T PF03092_consen  109 ALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPAD-E--  185 (433)
T ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccc-h--
Confidence            34445442  334888899999999999999999999999999999999998888887766666655552211111 0  


Q ss_pred             HHHHHHhcCccc---ccCCCCcchHHhhcCccHHHHHH-HHHhhhHHHHHHHhhhhHHHHHhhc---cchhhhhHHhhHH
Q 022127           84 ELRLIQAGKSDS---VKKRNPPSLRHLLSKLPSWTVII-ANITNNWGYFVLLSWMPIYFNTVFN---VNLKQAAWFSAVP  156 (302)
Q Consensus        84 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~~~  156 (302)
                       .....++..+.   ..++.....++.+++|.+|...+ ..++............-.+..+..+   +|+...+......
T Consensus       186 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg  264 (433)
T PF03092_consen  186 -VFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVG  264 (433)
T ss_pred             -hhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHH
Confidence             00000000000   00111224566777788776655 2222221111110100001123344   7777777776555


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc---------ccchHHHHHHHHHHHHHhhhhh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY---------AKSPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  227 (302)
                      .++.++|..+...    +.++..    .|+.+.....+.....+.-...         .++.+....--.+......+.+
T Consensus       265 ~~~~l~g~~~y~~----~~~~~~----~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  265 SIASLLGILLYRK----YFSNWS----WRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHH----HHhCCC----HHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            5666666555443    333222    1444433333222222211111         1111222333344455556666


Q ss_pred             hhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          228 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-------SFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      -+......++.| ...|+.+++..++.|+|..++..+...+.+..+       +.....++..++.++...+..++.+++
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~  416 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQK  416 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            677777888888 789999999999999999999999988876544       233445555555555555554555543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09952 shikimate transporter; Provisional

Probab=99.20  E-value=3.4e-09  Score=90.36  Aligned_cols=163  Identities=14%  Similarity=0.100  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhh--ccchhhhhHHh-----hHHHHHHHhhhhhhhcccchhhccCCchhHHHH
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVF--NVNLKQAAWFS-----AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRK  186 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  186 (302)
                      ....+..++...-........|.+..+.+  +.++.+ +...     ....++..+++++.|+++||+|||+.       
T Consensus        25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~-------   96 (438)
T PRK09952         25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM-------   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH-------
Confidence            34444444444444444445555555544  566553 4432     23445567888999999999997632       


Q ss_pred             HHHHHhhhhhHHHHHHhhcccchH--------HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHH
Q 022127          187 IMQSIGFIGPGVSLLCLNYAKSPA--------VAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAA  257 (302)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~  257 (302)
                        +..+..+..++..+..+.++..        .....-.+.+.+.+..++....+..|..| ++|+...+..+....+|.
T Consensus        97 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         97 --LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             --HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence              2356666666666666666643        23444455566666666777788889888 889999999888888888


Q ss_pred             HHHHHHhhhhhc--------cccchhHHHHHHHHHHHH
Q 022127          258 IISTIGTGYFVQ--------WLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       258 ~i~~~i~g~l~~--------~~g~~~~~~~~~~~~~~~  287 (302)
                      .+++.+...+..        ..| |+..|++.++..++
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~  211 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHH
Confidence            888877766542        344 99999887766544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.20  E-value=3e-09  Score=92.30  Aligned_cols=139  Identities=9%  Similarity=-0.079  Sum_probs=99.2

Q ss_pred             cchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccc------hHHHHHHHH
Q 022127          144 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS------PAVAAVLIT  217 (302)
Q Consensus       144 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  217 (302)
                      .+..+.+.+.+...++..++.++.|+++||+|||+..         ..+.++..++.......++      .........
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~  123 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY---------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRF  123 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHH
Confidence            4455678889999999999999999999999986322         2333333333333333322      344556666


Q ss_pred             HHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc----------------------ccch
Q 022127          218 IALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW----------------------LGSF  274 (302)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~----------------------~g~~  274 (302)
                      +.+++.+...+....+..|..| ++|+++.++.+....+|..+++.+...+...                      ..+|
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  203 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMW  203 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccH
Confidence            6677777777888899999998 8999999999999999999999887665321                      0149


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 022127          275 QAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       275 ~~~~~~~~~~~~~~~~~  291 (302)
                      +..+.+.++..++..+.
T Consensus       204 R~~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       204 RILIGFGAVPALLALYF  220 (502)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98887776666555444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.19  E-value=2.4e-09  Score=92.64  Aligned_cols=165  Identities=13%  Similarity=0.066  Sum_probs=106.8

Q ss_pred             HHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhh----hhH--HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHH
Q 022127          114 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ----AAW--FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI  187 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~--~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  187 (302)
                      ....+..++...-...+....| ++.+.++.+..+    .+.  ..+...++..++.++.|+++||+|||+.        
T Consensus        19 ~~~~~g~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~--------   89 (490)
T PRK10642         19 TAASLGNAMEWFDFGVYGFVAY-ALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI--------   89 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--------
Confidence            3344455554444444444444 444445433211    111  1356668889999999999999997632        


Q ss_pred             HHHHhhhhhHHHHHHhhcccchHH--------HHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHH
Q 022127          188 MQSIGFIGPGVSLLCLNYAKSPAV--------AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~  258 (302)
                       +..+.++.+++.+.....++...        ....-.+.+.+.+...+....++.|..| ++||...++......+|..
T Consensus        90 -l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~  168 (490)
T PRK10642         90 -LAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV  168 (490)
T ss_pred             -HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence             23566666666666666666432        3444556666677777788888999887 8899999998888778887


Q ss_pred             HHHHHhhhhh--------ccccchhHHHHHHHHHHHHHH
Q 022127          259 ISTIGTGYFV--------QWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       259 i~~~i~g~l~--------~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      +++.+...+.        +..| |+..|++.+...+++.
T Consensus       169 lg~~~~~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~  206 (490)
T PRK10642        169 LGAGVVVLISTIVGEANFLDWG-WRIPFFIALPLGIIGL  206 (490)
T ss_pred             HHHHHHHHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHH
Confidence            7776654432        2445 9999998766555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.18  E-value=6.6e-09  Score=87.30  Aligned_cols=175  Identities=11%  Similarity=-0.009  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHH--hhHHHHHHHhhhhhh-hcccchhhccCCchhHHHHHHH
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF--SAVPWGTMAVSGYMA-GKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      +..+...++.+..........+|.++++ .|.|..+.|.+  .........+..++. ++..||.|+|+       .++.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-------~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-------SWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-------hHHH
Confidence            3456667777888888888999999999 69999999997  356677787777777 45789888873       3222


Q ss_pred             HHhhhhh--HHHHHHhhcccc-hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          190 SIGFIGP--GVSLLCLNYAKS-PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       190 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      .......  ...+.......+ ............++.....+.......|..+ ++++...+.......+|..+++...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~  154 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL  154 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2212111  111111111212 1122222222223333334444555555555 55677777777777888899998888


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ++.++.| |+..|++.+++.++..+..+...
T Consensus       155 ~l~~~~g-w~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       155 VLFGKFG-QRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHhC-HHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999887 99999999888777666554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.18  E-value=2.9e-09  Score=88.19  Aligned_cols=287  Identities=14%  Similarity=0.076  Sum_probs=158.5

Q ss_pred             chhhhhhhcccCcc--chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCC----CC
Q 022127            2 PAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND----PC   75 (302)
Q Consensus         2 p~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~----p~   75 (302)
                      |...++++|.+|++  +|-..++++.++.++|..++|.+.+++.++.||+..|...++-..+ .++.+...++.    +.
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~-gl~~f~~~~r~~~~~~~  214 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIGG  214 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHccchhcCCCC
Confidence            45678899999874  4788899999999999999999999999999999999996664444 33333333321    11


Q ss_pred             CCCCC--ChHHHHH---------HHh----cCcccc------------cC---CCCcchHHhhcC-ccHHHHHHHHHhhh
Q 022127           76 NSPFV--SKSELRL---------IQA----GKSDSV------------KK---RNPPSLRHLLSK-LPSWTVIIANITNN  124 (302)
Q Consensus        76 ~~~~~--~~~~~~~---------~~~----~~~~~~------------~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  124 (302)
                      ..+..  +..+...         ...    ....++            ..   .+.....+...+ ++.+..+. .+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~-Lfl~~  293 (498)
T COG3104         215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIP-LFLFA  293 (498)
T ss_pred             CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHHHH
Confidence            11110  0000000         000    000000            00   000000000011 22222222 22222


Q ss_pred             HHHHH----HHhhhhHHHHHh-----hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhh
Q 022127          125 WGYFV----LLSWMPIYFNTV-----FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  195 (302)
Q Consensus       125 ~~~~~----~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  195 (302)
                      ..++.    ..+.+..|.++.     +|++ ...++..+...+.-++.+++..++..|.++++.......|.-  +++.+
T Consensus       294 ~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFa--lGl~l  370 (498)
T COG3104         294 VIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFA--LGLIL  370 (498)
T ss_pred             HHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHH--HHHHH
Confidence            22222    223344444432     2222 345677788888888888888888888655542222223433  44444


Q ss_pred             hHHHHHHhhcc----------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          196 PGVSLLCLNYA----------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       196 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      ++.+.+.+...          .+.++.+....+..++--+..+...+.+.+..| ...+..+|........+..++..+.
T Consensus       371 ~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va  450 (498)
T COG3104         371 AGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVA  450 (498)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceec
Confidence            44444333221          134455555566666666677777888888888 6688888888877777777777777


Q ss_pred             hh------hhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          265 GY------FVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       265 g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +.      ..+.. .....|..++...++..+..+.
T Consensus       451 ~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         451 GLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             ccccccchhhhhh-hhhhhHHHHHHHHHHHHHHHHH
Confidence            63      12222 2455677666666655554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.17  E-value=3e-09  Score=90.63  Aligned_cols=160  Identities=11%  Similarity=0.070  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHH-hhHH-----HHHHHhhhhhhhcccchhhccCCchhHHHH
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF-SAVP-----WGTMAVSGYMAGKASDSLIKAGYSLTLVRK  186 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~-----~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  186 (302)
                      .....+..++.+.-...+....|...++ ++.++.+.+.. .+..     .+...++.++.|++.||+|||+.       
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-------   88 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG-------   88 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH-------
Confidence            3456667777777777777888876666 78776654433 2221     22234678899999999997632       


Q ss_pred             HHHHHhhhhhHHHHHHhhcccchHH--------HHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHH
Q 022127          187 IMQSIGFIGPGVSLLCLNYAKSPAV--------AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAA  257 (302)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~  257 (302)
                        ...+.....++.......++...        ..+.-.+.+.+.+...+....+..|..| ++|++..++.+...+++.
T Consensus        89 --l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         89 --LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             --HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence              23455555555656666655432        2333344444455556666778889888 899999999999888888


Q ss_pred             HHHHHHhhhhh--------ccccchhHHHHHHHH
Q 022127          258 IISTIGTGYFV--------QWLGSFQAFLTVTAG  283 (302)
Q Consensus       258 ~i~~~i~g~l~--------~~~g~~~~~~~~~~~  283 (302)
                      .+++.+++.+.        +..| |+..|++...
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~  199 (434)
T PRK15075        167 VFAALLGYLLNQWLSPAQMAEWG-WRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHH
Confidence            88887777653        3455 9999887543

>PRK09669 putative symporter YagG; Provisional

Probab=99.17  E-value=2.1e-09  Score=91.86  Aligned_cols=175  Identities=14%  Similarity=0.039  Sum_probs=108.5

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      .+..+..+........+++.|+.+.+|+|+.+.|.+....-+...+..++.|+++||.+.|.-.    ||..+..+.+..
T Consensus        15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr----rrp~il~~~~~~   90 (444)
T PRK09669         15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ----FRPYLLWFAIPF   90 (444)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCC----cchhHHHHHHHH
Confidence            3333444445566678899999999999999999999999999999999999999996543211    233333444444


Q ss_pred             HHHHHHhhcccc------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          197 GVSLLCLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       197 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      ++...+....++      .....+...+..........+..+...|..+  ++|.+..+......++|+.+++.+...+.
T Consensus        91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669         91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333322221      1222222223333344455566677777664  77898888888888888888776554444


Q ss_pred             cccc------chhHHHHHHHHHHHHHHHHHHhh
Q 022127          269 QWLG------SFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       269 ~~~g------~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      ...+      +|+..+.+.+++.++..+..++.
T Consensus       171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~  203 (444)
T PRK09669        171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFM  203 (444)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            3221      25556666665555554444333

>TIGR00898 2A0119 cation transport protein

Probab=99.16  E-value=3.7e-10  Score=98.13  Aligned_cols=149  Identities=7%  Similarity=0.006  Sum_probs=114.5

Q ss_pred             hhhHHHHHhhccc---hhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccch
Q 022127          133 WMPIYFNTVFNVN---LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP  209 (302)
Q Consensus       133 ~~~~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
                      ..|...+| ++++   ..+.++..+...++..++.++.|+++||+|||+.         ...+.++..++.+...+.++.
T Consensus       111 ~~~~i~~e-~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~---------~~~~~~~~~i~~~~~~~~~~~  180 (505)
T TIGR00898       111 FSSTIVTE-WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV---------LLLSTLVTAVSGVLTAFSPNY  180 (505)
T ss_pred             ccccEEEE-ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH---------HHHHHHHHHHHHHHHHHcccH
Confidence            44544444 8888   8889999999999999999999999999997632         234555555566666667777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT  288 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  288 (302)
                      +...+...+.+++.+...+.......|..| ++|+.+.++......+|..++|.+.+.+.+    |+..+++.++..++.
T Consensus       181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~  256 (505)
T TIGR00898       181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLF  256 (505)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Confidence            777777777777777777888888899888 789999999988888999998888766542    888888888777766


Q ss_pred             HHHHHhh
Q 022127          289 TIFWNLY  295 (302)
Q Consensus       289 ~~~~~~~  295 (302)
                      .+..+++
T Consensus       257 ~~~~~~~  263 (505)
T TIGR00898       257 FLLSWFV  263 (505)
T ss_pred             HHHHHhc
Confidence            6555433

>PRK11462 putative transporter; Provisional

Probab=99.13  E-value=6.5e-09  Score=89.01  Aligned_cols=174  Identities=15%  Similarity=0.082  Sum_probs=114.6

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      .+.-+..+........|+..|+.+..|.++..+|.+..+.-+.-++.-++.|.++||...|.-.    ||..+..+.+..
T Consensus        15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr----~rp~il~g~i~~   90 (460)
T PRK11462         15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGK----FRPWVLFGALPF   90 (460)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCC----cchhHhHHHHHH
Confidence            3444444556666678899999999999999999999999999999999999999986544222    333334554444


Q ss_pred             HHHHHHhhcccc------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          197 GVSLLCLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       197 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      ++...++...++      .....+...+...+......+..++..|+.+  ++|++..+......++|..+++.+...+.
T Consensus        91 ~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462         91 GIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544444433321      1223333344445555666677788888765  78999999999999998888877765554


Q ss_pred             cccc------chhHHHHHHHHHHHHHHHHHHh
Q 022127          269 QWLG------SFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       269 ~~~g------~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      +..|      +|.....+.+++.+++..+.+.
T Consensus       171 ~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        171 NLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4332      2455555555554444444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.3e-09  Score=92.25  Aligned_cols=149  Identities=13%  Similarity=0.087  Sum_probs=121.9

Q ss_pred             hhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHH
Q 022127          141 VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITI  218 (302)
Q Consensus       141 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  218 (302)
                      .+++|+.+-+++.+....+.+++.+..|++.||+|.|+.        + ..+.++.++..++.+...  +.+..++.-.+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v--------~-~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~l  137 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRV--------F-FISGLISALLTLLTPLAASIGFYLLLVLRFL  137 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHH--------H-HHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            578899999999999999999999999999999997632        2 355555566666655543  33445566667


Q ss_pred             HHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc-ccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          219 ALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW-LGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .+...+..++.......+..| ++|++..++.....++|..++-++.|.+.+. .| |+..|++.+++.++-.++++++.
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHh
Confidence            777778888888888888888 9999999999999999999999999999998 65 99999999999998888887766


Q ss_pred             cCc
Q 022127          297 TGE  299 (302)
Q Consensus       297 ~~~  299 (302)
                      +++
T Consensus       217 ~d~  219 (466)
T KOG2532|consen  217 SDS  219 (466)
T ss_pred             cCC
Confidence            543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.10  E-value=1e-09  Score=87.54  Aligned_cols=125  Identities=16%  Similarity=0.099  Sum_probs=95.0

Q ss_pred             cchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHh
Q 022127          144 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  223 (302)
Q Consensus       144 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
                      .+...+|++-+.+++...+.++.+|.++||+|||         ..+.++.+..++.........+....+..-.+++.+.
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k  135 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK  135 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3556788899999999999999999999999965         3334666666666666666666622222244444433


Q ss_pred             hhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc---cccchhHHH
Q 022127          224 SFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ---WLGSFQAFL  278 (302)
Q Consensus       224 ~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---~~g~~~~~~  278 (302)
                      + ..+...++++|+.+ |+|+.+++.++....+|-.+||.++|++.+   ..|++..++
T Consensus       136 g-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  136 G-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             C-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence            3 45677888999887 899999999999999999999999999987   456555444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.08  E-value=7.5e-09  Score=87.60  Aligned_cols=163  Identities=12%  Similarity=0.042  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .+.+..++.+.........++.+++++.|+|..+.|++.+...++..++++..|.++||+|+|       |+.+ .++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~-------r~~~-~~~~~   77 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSA-------QKVY-AVCHF   77 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------HHHH-HHHHH
Confidence            456777777778778889999999988999999999999999999999999999999999764       2222 24444


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHH----h----hhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI----Q----EIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      +..+........++.+.......+.+.......+...+..    .    |... ..+.+..|      .+|.+++|.+.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g  151 (418)
T TIGR00889        78 AGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS  151 (418)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH
Confidence            4444444445555555444444443333332223222221    1    2121 12333333      468889999998


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      .+ +..+ .+..|++.++..++..++.+
T Consensus       152 ~l-~~~~-~~~~f~~~~~~~~~~~~~~~  177 (418)
T TIGR00889       152 LL-DIEL-SNIQLYITAGSSALLGVFAL  177 (418)
T ss_pred             Hh-cccc-hhHHHHHHHHHHHHHHHHHh
Confidence            87 3222 23346666655555554433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.07  E-value=1.2e-08  Score=87.92  Aligned_cols=171  Identities=16%  Similarity=0.111  Sum_probs=108.8

Q ss_pred             HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchh----hccCCchhHHHHHHHHH
Q 022127          116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL----IKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~~~~~~~~~~~~  191 (302)
                      ..+..+..+........+++.|+++..|.++...|.+....-+..++..++.|.++||.    |||+        ..+..
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrr--------p~il~   82 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFK--------PWILI   82 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcc--------hhHhh
Confidence            34444555666677778899999999999999999999999999999999999999965    6542        22335


Q ss_pred             hhhhhHHHHHHhhcccc------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhc--cchhhhHHHHHHHHHHHHHHHHHHH
Q 022127          192 GFIGPGVSLLCLNYAKS------PAVAAVLITIALSLSSFSQAGYLLNIQEIA--PDCAGFLHGIANSAGTLAAIISTIG  263 (302)
Q Consensus       192 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~g~~~~~~~~g~~i~~~i  263 (302)
                      +....++...++...++      .....+...+...+......+..+...|+.  +++|.+..+......++|+.+.+.+
T Consensus        83 g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429         83 GTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555444433221      112222223333445555666777888876  3789998888777778777666655


Q ss_pred             hhhhhcccc------chhHHHHHHHHHHHHHHHHHHh
Q 022127          264 TGYFVQWLG------SFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       264 ~g~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ...+.+..|      .|.....+.+++.++..+..+.
T Consensus       163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~  199 (473)
T PRK10429        163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR  199 (473)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            444322211      1444444555554444444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.07  E-value=4.8e-09  Score=89.19  Aligned_cols=170  Identities=18%  Similarity=0.149  Sum_probs=120.2

Q ss_pred             HhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccc----hhhccCCchhHHHHHHHHHhhhhh
Q 022127          121 ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD----SLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      +...........+++.|+.+..|.++...|.+.....+..++..++.|.++|    |+|||+..        +..+....
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~--------~l~g~i~~   82 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW--------ILIGAILL   82 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE--------eehhhHHH
Confidence            4444555556678888999989999999999999999999999999999999    67766433        23566666


Q ss_pred             HHHHHHhhcc-c---c----hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 022127          197 GVSLLCLNYA-K---S----PAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGY  266 (302)
Q Consensus       197 ~~~~~~~~~~-~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~g~~i~~~i~g~  266 (302)
                      +++..++... +   +    .....+...+..........+..++..|..+  ++|.+..+.......+|..+...+.+.
T Consensus        83 ~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen   83 ALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             HHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            6666555543 2   1    1112333333344555556666777888776  679999999988888888777777777


Q ss_pred             hhcccc------chhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          267 FVQWLG------SFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       267 l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +.+..|      +|+....+.+++.++..++.....||
T Consensus       163 l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  163 LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            765443      47777777777777776666666555

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.04  E-value=4.5e-08  Score=79.07  Aligned_cols=158  Identities=18%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             HHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc---
Q 022127          130 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA---  206 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  206 (302)
                      .+-.+-+.+++.++.+..+++.+......+..+.++..+++.+|+|.|+         -+..++.+.+++..++...   
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~---------gi~lgL~l~avg~~lF~pAa~~  101 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA---------GIVLGLLLYAVGAALFWPAASS  101 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHhhhhhh
Confidence            3444445667779999999999999999999999999999999999652         2247777777777666432   


Q ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc---------------
Q 022127          207 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW---------------  270 (302)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~---------------  270 (302)
                      .+....+....+.+.+.+......+.++..+.| +..+.-+.+...+..+|.+++|.+++.+..+               
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~  181 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK  181 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence            334444554555555666667777888888777 6777888999999999999999999998873               


Q ss_pred             ---ccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          271 ---LGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       271 ---~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                         .++++.++...+...++..+.....+
T Consensus       182 ~~~~~~v~~pYl~~~~~lvll~v~~~~~k  210 (422)
T COG0738         182 GADASSVQFPYLILAGLLVLLAVLILLSK  210 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence               23466777777777776666655554

>TIGR00788 fbt folate/biopterin transporter

Probab=99.00  E-value=1.9e-08  Score=86.20  Aligned_cols=177  Identities=14%  Similarity=0.046  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      .......++..... .......+.++++.+|.|+.+.+.+.+...+...+-.+ +|.++||++.....    ||..+.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~r----Rr~~l~~~  101 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYT----KRWYLVLS  101 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcc----chHHHHHH
Confidence            34555567777777 66667788888887999999999998888888888554 99999999622111    34443444


Q ss_pred             hhhh-HHHHHHhhcccch-HHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhh---hHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          193 FIGP-GVSLLCLNYAKSP-AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAG---FLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       193 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      .++. ......+...++. ........+..++.............|..+++++   ...+......++|..+++.+.|.+
T Consensus       102 ~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       102 GLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            4444 2333333333332 2223344455555556666667777776653333   344445555668999999999999


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          268 VQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      .+..+ |+..|++.++..++......+++
T Consensus       182 ~~~~~-~~~~f~~~a~l~ll~~~~~~~~~  209 (468)
T TIGR00788       182 LDKTL-TRILFLITAALLLLQLFVSNLSK  209 (468)
T ss_pred             HHhcC-cchHHHHHHHHHHHHHHHHHhcc
Confidence            98876 99999888887777744444433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.94  E-value=7.3e-08  Score=80.59  Aligned_cols=139  Identities=17%  Similarity=0.110  Sum_probs=92.2

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .+....++++........++|.|+++ .|+|..|.|.+.+...+..+++.++.|.++||.+++       ++.+ .+..+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~-------~~~l-~~~~l   76 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA-------KRIL-ALLSL   76 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-------HHHH-HHHHH
Confidence            45666777777888888999999999 789999999999999999999999999999999764       3333 34444


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIG  263 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i  263 (302)
                      +.++.+......++.+.......+...+.....+...+...+..+ +++.-+|-....+++|-.++...
T Consensus        77 ~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   77 LSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHHHH
Confidence            444445454555555554444444443333334444444433332 34455566666666666666443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.2e-08  Score=87.54  Aligned_cols=173  Identities=15%  Similarity=0.145  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhhHHHHHH----HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          114 WTVIIANITNNWGYFVL----LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       114 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      |...+..+......+++    ..+.+.+.++ ++.+..+.+++.++......+..++.+.+.||+|.|.         ..
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~-f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~---------v~  114 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDY-FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT---------VM  114 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHH-hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH---------HH
Confidence            44445554444444433    3344444444 8888888999999999999999999999999999653         33


Q ss_pred             HHhhhhhHHHHHHhhcccchHHHHHHH-HHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          190 SIGFIGPGVSLLCLNYAKSPAVAAVLI-TIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      +.+.++...++++..+.++.+..++.. .+.+.+.++.+.+....+...++++|+.++|+......+|..+-|.+...+.
T Consensus       115 i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  115 IAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            577778888888888888876655544 4445667777777778888899999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          269 QWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       269 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      +..| |+..++..+.+.+-..+.....++
T Consensus       195 ~~~G-~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  195 SKYG-WRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHhC-cHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998 999998888887666655555554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.8e-07  Score=74.61  Aligned_cols=156  Identities=11%  Similarity=0.085  Sum_probs=122.2

Q ss_pred             HHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccc
Q 022127          129 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS  208 (302)
Q Consensus       129 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (302)
                      +....++..-++ +|.|...+|++.++..++..+.++...++.+|+|.+       |..  ..+++...++...-... +
T Consensus        30 svgPLL~~Ir~~-~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e-------r~l--~~~Llli~~G~~iR~~~-~   98 (395)
T COG2807          30 SVGPLLDEIRQD-LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE-------RSL--FLALLLIAAGILIRSLG-G   98 (395)
T ss_pred             hhhhhHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH-------HHH--HHHHHHHHHHHHHHhcc-c
Confidence            333444444444 899999999999999999999999999999999975       222  25555555555555444 3


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q 022127          209 PAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVT  288 (302)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  288 (302)
                      .........+.+.+.+..+......+.+-+||+.+..+|++....++++++++.+.-.+.++.++|+..+...+...+++
T Consensus        99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA  178 (395)
T COG2807          99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA  178 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence            44445555555666666677778888999999999999999999999999999999999998867999999999999998


Q ss_pred             HHHHHhh
Q 022127          289 TIFWNLY  295 (302)
Q Consensus       289 ~~~~~~~  295 (302)
                      .+.++.-
T Consensus       179 l~~WlPq  185 (395)
T COG2807         179 LLIWLPQ  185 (395)
T ss_pred             HHHHhhh
Confidence            8877654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.90  E-value=1.5e-07  Score=78.97  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             HHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchH--------HHHHHHHHHHHHhhhhhhh
Q 022127          158 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA--------VAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       158 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  229 (302)
                      +...+++++.|+++||+|||+.         ...+.++..++.......++..        .......+.+.+.+...+.
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  116 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKT---------LVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGG  116 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHH---------HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccc
Confidence            3445688999999999997532         2355555555555555555432        1222333334444445566


Q ss_pred             hhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc--------cccchhHHHHHHHHHHHHHHHH
Q 022127          230 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ--------WLGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       230 ~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~--------~~g~~~~~~~~~~~~~~~~~~~  291 (302)
                      ......|..| ++|+...+..+....+|..+++.+.+.+.+        ..+ |+..+.+.+...+++...
T Consensus       117 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG-WRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             cHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc-hHHHHHHHHHHHHHHHHH
Confidence            6777888777 889999999999999999999988766542        333 888888777666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.89  E-value=1.4e-07  Score=78.91  Aligned_cols=247  Identities=11%  Similarity=-0.045  Sum_probs=145.1

Q ss_pred             CccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhh----cCCCCCCCCCChHHHHHH
Q 022127           13 PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV----TNDPCNSPFVSKSELRLI   88 (302)
Q Consensus        13 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~   88 (302)
                      +++++.+.++...-.-.+..+++|++.|.+.+..+.+....+.+...++...+=++++    +..|+-+.+.++++.+..
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~  222 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS  222 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence            3556788888888888899999999999999988988888877777776554433222    222321111111111000


Q ss_pred             HhcC---ccc-----------ccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhh
Q 022127           89 QAGK---SDS-----------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  154 (302)
Q Consensus        89 ~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  154 (302)
                      ++..   +++           .-++...+|+..+++|.+.......+ .++...++...+..|+.. .|+++...|..-+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal-LY~TVLsf~~lmt~yl~~-~G~s~~~igi~R~  300 (432)
T PF06963_consen  223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL-LYFTVLSFGGLMTAYLKS-QGYSPSVIGIFRG  300 (432)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH-HHHHHhcCcHHHHHHHHH-CCCCHHHHHHHHH
Confidence            0000   000           00112345777778776655444444 344455667788889998 4999999999999


Q ss_pred             HHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc-ch---HHHHHHHHHHHHHhhhhhhhh
Q 022127          155 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SP---AVAAVLITIALSLSSFSQAGY  230 (302)
Q Consensus       155 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~  230 (302)
                      ...+.++.+.+...++.+|+|..+....  -...- ..++..++..+.....+ +.   ...+....+.-.+.-..--..
T Consensus       301 ~gav~Gl~gT~~~p~l~~riGlvr~G~~--~l~~q-~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~  377 (432)
T PF06963_consen  301 LGAVFGLLGTWVYPWLMKRIGLVRAGLW--SLWWQ-WVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAV  377 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhHHH--HHHHH-HHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999999997543211  00000 11122222222222211 11   111122222222222233344


Q ss_pred             hhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          231 LLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       231 ~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      .-..+|..| ++||+..|+-+...++...+.-.+.
T Consensus       378 ~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  378 TQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            556677666 8899999999999998877655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.8e-07  Score=77.09  Aligned_cols=180  Identities=13%  Similarity=0.063  Sum_probs=124.4

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .....-+...........|+..|+.++.|.++..+|.+..+.-+.-++.-++.|.++||.++|.-.    +|..+..+.+
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr----fRP~lL~g~i   91 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR----FRPWLLWGAI   91 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc----ccHHHHHHhH
Confidence            445555556667777789999999999999999999999999999999999999999988755433    3444445544


Q ss_pred             hhHHHHHHhhccc------chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 022127          195 GPGVSLLCLNYAK------SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGTLAAIISTIGTGY  266 (302)
Q Consensus       195 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~~g~~i~~~i~g~  266 (302)
                      ..++...+....+      +.....+...+...+......+..++..++.+  ++|.+..+.-....++|+.+...+.+.
T Consensus        92 p~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p  171 (467)
T COG2211          92 PFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP  171 (467)
T ss_pred             HHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444333      23344455555556666667777788888664  889999999999999998887777766


Q ss_pred             hhcccc------chhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          267 FVQWLG------SFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       267 l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      +.+..|      +|+....+.+++.++..+..+.-.||
T Consensus       172 lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E  209 (467)
T COG2211         172 LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE  209 (467)
T ss_pred             HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            665432      25555555555555555544444343

>PRK09848 glucuronide transporter; Provisional

Probab=98.83  E-value=3.9e-07  Score=78.10  Aligned_cols=145  Identities=16%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  196 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  196 (302)
                      .+..+...........+++.|+++..|+++.+.|.+.+...+...+..++.|+++||.++|.-.    ||..+..+.+..
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr----~~~~~~~~~~~~   89 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGK----FRPFLLFGTAPL   89 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcC----chHHHHHHHHHH
Confidence            3344444555555667788899998999999999999999999999999999999998655322    232322332222


Q ss_pred             H-HHHHHhhcc----cch--HHHHHHHHHHHHHhhhhhhhhhhHHhhhcc--chhhhHHHHHHHHHH-----HHHHHHHH
Q 022127          197 G-VSLLCLNYA----KSP--AVAAVLITIALSLSSFSQAGYLLNIQEIAP--DCAGFLHGIANSAGT-----LAAIISTI  262 (302)
Q Consensus       197 ~-~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~~~~~-----~g~~i~~~  262 (302)
                      . .....+...    ...  ........+...+.+...++..+...+..+  ++|.+..+.-....+     ++..++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~  169 (448)
T PRK09848         90 MIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPS  169 (448)
T ss_pred             HHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 222222111    111  112222333344455555566666555443  667776665544333     34445555


Q ss_pred             Hhh
Q 022127          263 GTG  265 (302)
Q Consensus       263 i~g  265 (302)
                      +.+
T Consensus       170 i~~  172 (448)
T PRK09848        170 IKN  172 (448)
T ss_pred             HHH
Confidence            544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.83  E-value=2.6e-07  Score=80.50  Aligned_cols=134  Identities=13%  Similarity=0.022  Sum_probs=106.6

Q ss_pred             hhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhh
Q 022127          148 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (302)
                      +.+++.+...++..++.++.|+++|++|||+         .+.++.+...++.+.....++.....+.-.+.+.+.+...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~---------~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKK---------TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhh
Confidence            4489999999999999999999999999763         2246666666777777777788888888888888888888


Q ss_pred             hhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHH
Q 022127          228 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL-GSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~  291 (302)
                      .....+.+|..| +.||...+..+....+|..++ .+.+...++. .+|+..+.+..+.+++-.+.
T Consensus       161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            888888999999 799999999999999887777 5556555543 24998887777777766666

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=5.4e-08  Score=82.88  Aligned_cols=148  Identities=12%  Similarity=0.054  Sum_probs=113.5

Q ss_pred             HhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHH
Q 022127          140 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIA  219 (302)
Q Consensus       140 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (302)
                      +..+....+.+...+.+.++.+++.+.++.+.||++-.        +.+...+..- ++..++-....+.+..++.-++.
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls--------~~l~~~~~~w-~~~~~~~~~~~s~~~~ialr~ll  144 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLS--------KGLSVSGILW-GLFGFLTAAVHSFPGLIALRFLL  144 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChH--------HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH
Confidence            44677778899999999999999999999999999832        2332222222 22222222356677778888888


Q ss_pred             HHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc------cccchhHHHHHHHHHHHHHHHHH
Q 022127          220 LSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ------WLGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      +.+.+..+|....++...+. ++|+..+|+.+...++|+++|+.+...+.+      .. +|++.|++.+++.+...++.
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHheE
Confidence            88888899999999988887 899999999999999999999999988643      23 49999999998888777665


Q ss_pred             Hhhcc
Q 022127          293 NLYST  297 (302)
Q Consensus       293 ~~~~~  297 (302)
                      +++.+
T Consensus       224 f~~lp  228 (495)
T KOG2533|consen  224 FFFLP  228 (495)
T ss_pred             EEEec
Confidence            55443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.82  E-value=2e-06  Score=70.93  Aligned_cols=247  Identities=11%  Similarity=0.018  Sum_probs=151.1

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC---CC
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--IGISGPFILFSSLGLLWLSTWTSKVTNDPCNS---PF   79 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~---~~   79 (302)
                      .+++-...|+++-.++.+...+..-+|..++..+|-.+...  .+.+...++ ...+....+++.+++|..++..   ++
T Consensus       115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i-sl~~~~~a~~~~~fLP~~~~S~~f~r~  193 (412)
T PF01770_consen  115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI-SLASVSLALLIALFLPMPKRSLFFHRK  193 (412)
T ss_pred             HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHcCCCCcccceecc
Confidence            46666777888889999999999999999999999877753  344444444 3333444445555577654411   11


Q ss_pred             CCh------HHHHHHHhcCcc-----cccCCC-----------CcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHH
Q 022127           80 VSK------SELRLIQAGKSD-----SVKKRN-----------PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY  137 (302)
Q Consensus        80 ~~~------~~~~~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (302)
                      .++      .+.+..++..++     +.++..           ....++..+||.++...+-+.+...+++....|....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~L  273 (412)
T PF01770_consen  194 PPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSL  273 (412)
T ss_pred             CccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            100      000000000000     000000           1234556788999998888888888888888887777


Q ss_pred             HHHh--hccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHH
Q 022127          138 FNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL  215 (302)
Q Consensus       138 ~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (302)
                      .++.  -+-+....|..-+...+.+.++.+..|++-.++.+.       .........++.+..++++...++.+.....
T Consensus       274 W~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~  346 (412)
T PF01770_consen  274 WDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMSFTGNIWVCYAG  346 (412)
T ss_pred             HHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7764  233445567777888888888999999885555432       2333334444555566666777788877777


Q ss_pred             HHHHHHHhhhhhhhhhhHHhh-hccchhhhHHHHHHHHHHHHHHH
Q 022127          216 ITIALSLSSFSQAGYLLNIQE-IAPDCAGFLHGIANSAGTLAAII  259 (302)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~~~~~g~~i  259 (302)
                      .++......+..+....-++. +..+.-|...|+.++..-+-..+
T Consensus       347 yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti  391 (412)
T PF01770_consen  347 YIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI  391 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence            776666655555555444433 44467788888877665544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.80  E-value=4.5e-07  Score=71.76  Aligned_cols=280  Identities=12%  Similarity=0.079  Sum_probs=166.5

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCh
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK   82 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   82 (302)
                      ++++-+..+|+++.++.|.-.+..-.|...|..++..+.+.-  ++...-.+ .............++|..+++.-...+
T Consensus       116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~f~~~  194 (433)
T KOG3810|consen  116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLYFHRL  194 (433)
T ss_pred             hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence            566777788999999999999999999999998888877543  33333333 222333334444556655432111001


Q ss_pred             HHHHHHHhcCcccccCCC------------CcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhc-cchhhh
Q 022127           83 SELRLIQAGKSDSVKKRN------------PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN-VNLKQA  149 (302)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~  149 (302)
                      +++.. ..+.++...+.+            ..+.++..+||++....+-+.+...+++-...+....-++... -.....
T Consensus       195 ~~~~~-v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyN  273 (433)
T KOG3810|consen  195 EDKIS-VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYN  273 (433)
T ss_pred             cccce-eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhc
Confidence            11100 111111111111            1134456788998888888888888888887777766666321 112233


Q ss_pred             hHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhh
Q 022127          150 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      |..-....+.++++.+..|.+.-++.|.       +..++.++....+..++.+...++.|...+...+......+..+.
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~iti  346 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITI  346 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhH
Confidence            4455566777888888888886666554       445555666666666777777788877777776666655555554


Q ss_pred             hhhHH-hhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc----------chhHHHHHHHHHHHHHHHHHHhhc
Q 022127          230 YLLNI-QEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG----------SFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       230 ~~~~~-~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ....+ .++..+.-|...|+..++.-+-..+-..   ...|..|          -|..-|.+.+++.+++........
T Consensus       347 A~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~  421 (433)
T KOG3810|consen  347 ATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMC  421 (433)
T ss_pred             HHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHh
Confidence            44333 4455577888888877665554443333   2334322          244557777777777765544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=1.3e-07  Score=82.64  Aligned_cols=140  Identities=9%  Similarity=0.037  Sum_probs=116.3

Q ss_pred             HhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHH
Q 022127          140 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIA  219 (302)
Q Consensus       140 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (302)
                      +..+.+.....+..++..++..+|+++.|.++||+|||+         ....++++..++.+...+.++.+...+.-++.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~---------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~  181 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP---------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLS  181 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH---------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            335667778888889999999999999999999999753         33467777777777788888998888888888


Q ss_pred             HHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022127          220 LSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      +++.+...........|..+ ++|+.+..+ ......++.+++...+++..   +|+..+++......+..+..
T Consensus       182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLW  251 (521)
T ss_pred             HhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888776 999999999 88888899999999999887   59999998888877766653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.75  E-value=8.8e-07  Score=74.84  Aligned_cols=141  Identities=9%  Similarity=0.039  Sum_probs=97.5

Q ss_pred             hHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhh
Q 022127          150 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  229 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
                      +...++..+++++|++..++++||+|||+...      +..+..+..++........++....+..-.+.+...+.....
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~------~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALL------LSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence            45667888999999999999999999873211      111222222223333333456667777778888788888888


Q ss_pred             hhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHH-hhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          230 YLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIG-TGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       230 ~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i-~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ...+..|..| +.||....+......+|..++..+ ...+.+....|...+....+.+++..+...++.
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888999999 889999999999999998888544 344444433477777777766666665544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.74  E-value=1.3e-07  Score=79.36  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=146.2

Q ss_pred             hhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--cC-----------CchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            6 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--IG-----------ISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         6 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g-----------wr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      +++++-...++|.++++....+..+|.++||.++..+..-  -|           +..+-|+.+++.++..+....+.+|
T Consensus       152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            5677777788999999999999999999999888766531  11           3455677788888877777777888


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHH
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  152 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  152 (302)
                      .+++..+.+.++.  .++..+.++.+..+.++      +..+.+.+..+...+......+..+.+....++++.+++-..
T Consensus       232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~  303 (488)
T KOG2325|consen  232 VYRGIIDKKKRSV--EEEKSDIEKVKKPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLY  303 (488)
T ss_pred             cccCccccccccc--hhhccchhhhccCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHh
Confidence            7664432221111  00000001111111111      223445555555666666656666666666678776665544


Q ss_pred             hhHHH-HHHHhhhh-hhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh--hc--ccc----------------h-
Q 022127          153 SAVPW-GTMAVSGY-MAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL--NY--AKS----------------P-  209 (302)
Q Consensus       153 ~~~~~-~~~~~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~----------------~-  209 (302)
                      .+... +.+.+... ......-|+++.-.     |+.+ ..+++.........  ++  ...                . 
T Consensus       304 ~gi~~~~~g~ls~~~~l~~~f~~l~~i~~-----r~~~-~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~  377 (488)
T KOG2325|consen  304 NGITLSISGILSVILLLLYIFTRLGKIDK-----RRII-LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS  377 (488)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----ceee-eehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence            43322 22222221 11222222222000     1111 12212211111111  11  000                0 


Q ss_pred             H-------HHHHHHHHHHHHhhhhhh----hhhhHHhh-hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHH
Q 022127          210 A-------VAAVLITIALSLSSFSQA----GYLLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAF  277 (302)
Q Consensus       210 ~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  277 (302)
                      |       .............+...|    ...+.-++ +-|+++++..|++......+..++|.+........| ++..
T Consensus       378 wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v  456 (488)
T KOG2325|consen  378 WCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPV  456 (488)
T ss_pred             hhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHH
Confidence            0       001111111122333333    23344455 457999999999999999999999999999988887 7777


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 022127          278 LTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~  295 (302)
                      +.+.....++...++.++
T Consensus       457 ~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  457 WIILLCLLLVVAALWIVF  474 (488)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777666666555554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.69  E-value=1.2e-06  Score=67.80  Aligned_cols=136  Identities=15%  Similarity=0.028  Sum_probs=89.4

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      ....|.+..|.|..-+ .+|+|.+|...+.....++..+| +..|.+.||.|.+         ....++......+....
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~-~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~   83 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKS-RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLL   83 (250)
T ss_pred             cCcccchhhhhHHHHH-HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH---------HHHHHHHHHHHHHHHHH
Confidence            3455666677776554 59999999999998888888775 8889999999854         22335555555554443


Q ss_pred             hc--c---c--chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022127          204 NY--A---K--SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW  270 (302)
Q Consensus       204 ~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  270 (302)
                      ..  .   +  +.+......++++...............+.+|++||++.|+.-....+++++-..+...+.+.
T Consensus        84 ~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   84 WLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            32  1   1  222222222333222222223333334567799999999999999999999888888877765

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.66  E-value=9.3e-07  Score=74.12  Aligned_cols=179  Identities=10%  Similarity=0.078  Sum_probs=135.9

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      +++.+++....++...+...+.....+++=-++++ .+..+.--|........+-++.-+..+++.+|+|+-+..     
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-----  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-----  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence            56777877766666666666666666777556777 665666667666666777778888889999999976532     


Q ss_pred             HHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHH-HHHHHHHHHH
Q 022127          186 KIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAG-TLAAIISTIG  263 (302)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~-~~g~~i~~~i  263 (302)
                          ..++.+-..=++.+...+|+|..+..-.+-+...+..+....+++++..| +.++++.|+..... .+|-.+|+.+
T Consensus       440 ----~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI  515 (618)
T KOG3762|consen  440 ----YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI  515 (618)
T ss_pred             ----eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence                24555555556666777889988888888888888889999999999887 88999999987665 5788999999


Q ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          264 TGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       264 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      +|.+.+..| -+..|..+++.+++..+....+
T Consensus       516 GG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  516 GGFVVERFG-ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987 7788888887777776665544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.56  E-value=3.8e-05  Score=61.89  Aligned_cols=160  Identities=13%  Similarity=0.084  Sum_probs=94.4

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      ..+.+....|.-...++ +|++..+.+.++......+.+...+.|.++||+|||+.        . +..+++..++.+ .
T Consensus        47 ~~aDWLQGpY~Y~LY~~-yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~--------c-l~~cily~~scl-~  115 (354)
T PF05631_consen   47 MAADWLQGPYLYALYES-YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA--------C-LLFCILYSLSCL-T  115 (354)
T ss_pred             HHHHHhhcchhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH--------H-HHHHHHHHHHHH-H
Confidence            33433333333333444 89999999999999999999999999999999998632        1 233333333333 2


Q ss_pred             hcccchHHHHHHHHHHHHHhhhhhhhhhhHH-hhh----cc-chhhhHHHHHHHH-HHHHHHHHHHHhhhhhccccc-hh
Q 022127          204 NYAKSPAVAAVLITIALSLSSFSQAGYLLNI-QEI----AP-DCAGFLHGIANSA-GTLAAIISTIGTGYFVQWLGS-FQ  275 (302)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~p-~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~g~-~~  275 (302)
                      -..++....+..-++++..........-+.. .|.    .| +..+...+..... ..+-.+.+..+.-.+.|..+. ..
T Consensus       116 k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v  195 (354)
T PF05631_consen  116 KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV  195 (354)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence            3345555556665666655555555442222 222    23 3345555544422 233444555555566665542 46


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 022127          276 AFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~  294 (302)
                      .+|.....+.+++.++...
T Consensus       196 aPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  196 APFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             chHHHHHHHHHHHHHHHHh
Confidence            7888888888777765543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=98.55  E-value=4.8e-06  Score=63.66  Aligned_cols=239  Identities=16%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             cchhhHHHHHhhhhhhHHHHHHHHHHHH---Hh--hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHH
Q 022127           15 HERASAIGICMGGFHLGNVVGLLLTPIM---LS--TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQ   89 (302)
Q Consensus        15 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~   89 (302)
                      |+|+..+.+...+.++|.++....--.-   .+  .-.|++++.+.+++.++-.++...+-.|  -+....+  |+++. 
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~--fd~~~~~--~k~~k-   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN--FDIYSPK--EKQEK-   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCcc--ccccc-
Confidence            5677888888888899988765442111   11  2369999999888887766555544222  1111111  11100 


Q ss_pred             hcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchh---------h----hhHHhhHH
Q 022127           90 AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK---------Q----AAWFSAVP  156 (302)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---------~----~~~~~~~~  156 (302)
                          ++.+.+.+...++.+|+|..|...+.+......  ....+.+.........++.         .    ......+.
T Consensus        77 ----~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~--~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~f  150 (267)
T PF07672_consen   77 ----ENSTLSKKPSYKSILKEKETWKWILIYGIWLVV--VVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILF  150 (267)
T ss_pred             ----ccccccccchHHHHHccchHHHHHHHHHHHhee--EEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHH
Confidence                011112345789999999999877766554322  1122222333321122111         1    12222333


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh-hcccchHHHHHHHHHHHHHhhhh----hhhhh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL-NYAKSPAVAAVLITIALSLSSFS----QAGYL  231 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  231 (302)
                      ..+..+|.+..|...+.--+||..    -..+...+.+...+..+.. ....+.......+.+.++..|.+    .+...
T Consensus       151 v~g~~~G~~~ig~~nkt~~kRk~f----i~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL  226 (267)
T PF07672_consen  151 VAGYFLGPFTIGLWNKTNYKRKPF----IHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL  226 (267)
T ss_pred             HHHHhhhceeeccchhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            334445555555554443333221    1111223333333333332 12222211122222222222322    23333


Q ss_pred             hHHhh---hccchhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          232 LNIQE---IAPDCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       232 ~~~~~---~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      ....|   ..|++.|...|+.-.++++.-.+.-.+...+.
T Consensus       227 ~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~  266 (267)
T PF07672_consen  227 NLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVIA  266 (267)
T ss_pred             cChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333   34577888888888888887777766665554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.50  E-value=0.00022  Score=60.72  Aligned_cols=167  Identities=11%  Similarity=-0.019  Sum_probs=97.2

Q ss_pred             hhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--------cCCc----hHHHHHHHHHHHHHHHHHhhhcC
Q 022127            5 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------IGIS----GPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         5 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~gwr----~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      .++++|.++.+|-.|..++...+.++|.++++.+..++.+.        -.|.    ..+.+.++...+.. .+.+.+.+
T Consensus       151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~l~~  229 (472)
T TIGR00769       151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAII-LLYWWVNR  229 (472)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            35678999999999999999999999999999998888732        1231    23333333333333 33333433


Q ss_pred             CCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhh---
Q 022127           73 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA---  149 (302)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---  149 (302)
                      ...+++...+.++    +..+++.+.....+.+.++++|.++.+++...++..+...+..-.-..+++.+. |+.+.   
T Consensus       230 ~~~~~~~~~~~~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f  304 (472)
T TIGR00769       230 NVLTDPRSYNPAL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAF  304 (472)
T ss_pred             cccCCccccchhh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Confidence            2222111111110    111111112223467788999999888888888777766666444445555443 33332   


Q ss_pred             -hHHhhHHHHHHHhhhhhhhcccchhhcc
Q 022127          150 -AWFSAVPWGTMAVSGYMAGKASDSLIKA  177 (302)
Q Consensus       150 -~~~~~~~~~~~~~~~~~~g~l~dr~~~~  177 (302)
                       |......++...+..+..+++.+|+|-+
T Consensus       305 ~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       305 MGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             2233344555555566668888888754

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.47  E-value=3.3e-07  Score=64.80  Aligned_cols=71  Identities=24%  Similarity=0.425  Sum_probs=61.1

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN   72 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~   72 (302)
                      |...+++.|.+|+++|++.+++.+....+|..+++.+.+.+.+..+|++.+++.+...++..+...+..||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            45567889999999999999999999999999999999999999999999999888777766666655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.46  E-value=3.6e-05  Score=66.03  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=93.7

Q ss_pred             hHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhh
Q 022127          150 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  227 (302)
                      ++..++..+...+..+..|-++|+-++||       +.+ .....++.+....+.+  .++.+...++..+...+.....
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk-------~~l-~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~  144 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRK-------RFL-LIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASN  144 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccch-------HHH-HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999998873       333 3333333333333333  3344555556666666677777


Q ss_pred             hhhhhHHhhhcc-chh--------------------------hhHHHHHHHHHHHHHHHHHHHhhhhhcccc-------c
Q 022127          228 AGYLLNIQEIAP-DCA--------------------------GFLHGIANSAGTLAAIISTIGTGYFVQWLG-------S  273 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~--------------------------~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-------~  273 (302)
                      ...+++..++.+ +.+                          ++.++.-...+++|+.+.-.+.-.+....+       +
T Consensus       145 vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~  224 (477)
T PF11700_consen  145 VFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWA  224 (477)
T ss_pred             HHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchh
Confidence            777888888876 555                          899999999999998877766544432222       2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          274 FQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      .+..+.+.++..++..+..++..+++
T Consensus       225 ~r~~~~~~a~ww~vfsiP~~~~~~~~  250 (477)
T PF11700_consen  225 IRVAFLIVALWWLVFSIPLFLWLPDR  250 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            47777777777666665555554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.44  E-value=1.6e-06  Score=53.99  Aligned_cols=63  Identities=14%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccC
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAG  178 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  178 (302)
                      .+-...++.+.+...+..++|.|+++ .|+|+.+.|.+.++..+...++.+++|.++||.++++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            34556677777888899999999998 8999999999999999999999999999999999874

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.37  E-value=1.3e-05  Score=68.13  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=105.1

Q ss_pred             hhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc----ch
Q 022127          134 MPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK----SP  209 (302)
Q Consensus       134 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  209 (302)
                      ...|+++++|.++.+...+.....+...+ .++.|.++|-+.-++..    ||.-+.++.++..+....+...+    +.
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            34567778999999988887776665544 67889999987422221    45544566665544333333222    33


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhc---cchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIA---PDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  286 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  286 (302)
                      ......+.+...+.........+...|..   |+.+|...+.......+|+.++..+.|.+.+..+ ++..|.+.+.+..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence            33444444555555555566666666654   4447888899999999999999999999998875 7888888777766


Q ss_pred             HHHHHHHhhcc
Q 022127          287 VTTIFWNLYST  297 (302)
Q Consensus       287 ~~~~~~~~~~~  297 (302)
                      +..+..+.+.+
T Consensus       166 l~~~~~~~~~~  176 (433)
T PF03092_consen  166 LMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHhhh
Confidence            66555544444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.37  E-value=1.8e-05  Score=70.34  Aligned_cols=163  Identities=12%  Similarity=0.005  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          126 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       126 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      .+|++...+..|+.+.+|++..++..+........-+..+++|+++|++-.|       ++.+ ..+.++..++..++..
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~~tI-l~~~ii~~lG~~llai   73 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------FKTI-LYLSIVYVVGHALLSF   73 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHH-HHHHHHHHHHHHHHHh
Confidence            3556677778888888999998888888877777888889999999986443       2222 2333344444443332


Q ss_pred             ccc--------hHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c---hhhhHHHHHHHHHHHHHHHHHHHhhhhhccc--
Q 022127          206 AKS--------PAVAAVLITIALSLSSFSQAGYLLNIQEIAP-D---CAGFLHGIANSAGTLAAIISTIGTGYFVQWL--  271 (302)
Q Consensus       206 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--  271 (302)
                      ...        ....+..+.+..++.+..-+...+...|..+ +   .+-....+.....++|+.+++.+.+++.+..  
T Consensus        74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            210        1223344555556666667777777776554 2   3677888899999999999999999987543  


Q ss_pred             -c---chhHHHHHHHHHHHHHHHHHHhhc
Q 022127          272 -G---SFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       272 -g---~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                       |   +|..+|.+.+++.+++.+++....
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAGS  182 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence             1   488899998888888887765433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.33  E-value=1.4e-05  Score=67.35  Aligned_cols=177  Identities=11%  Similarity=0.004  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHH-hhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNT-VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      ++...+..++..........-.-.|+++ +.+.+.+..|+..+...++..++++..|+...|.++-+...        +.
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl--------i~  107 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL--------IV  107 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH--------HH
Confidence            4455555555554444444444456655 35667788899999999999999999999999998632221        25


Q ss_pred             hhhhhHHHHHHh---hcccc--hHHHHHHHHHHHHHhhhhhhhhhhHHhhh-ccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          192 GFIGPGVSLLCL---NYAKS--PAVAAVLITIALSLSSFSQAGYLLNIQEI-APDCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       192 ~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      +.+++.++.++.   ...++  .+..+..-.+.+.+. ......-.++++. .+++|.++.+..+....+|.++||.+..
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~  186 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL  186 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence            555555554443   22333  222222223332222 2234445666654 4588888888888877777777776655


Q ss_pred             hhhcc------------ccchhHHHHHHHHHHHHHHHHHHhhccC
Q 022127          266 YFVQW------------LGSFQAFLTVTAGLYFVTTIFWNLYSTG  298 (302)
Q Consensus       266 ~l~~~------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
                      .+...            ...|..+-++.+.+.++..+....+.+|
T Consensus       187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            44321            2246778888888888887776665554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.28  E-value=1.7e-08  Score=86.56  Aligned_cols=136  Identities=12%  Similarity=0.022  Sum_probs=101.3

Q ss_pred             hhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc---chHHHHHHHHHHHHHhh
Q 022127          148 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK---SPAVAAVLITIALSLSS  224 (302)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  224 (302)
                      +.+...+...++..+|+++.|.++||+|||+..         ..+..+..++.++....+   +.+.....-.+.+++.+
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g  117 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL---------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIG  117 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccc
Confidence            457788889999999999999999999988543         255566666666666666   66666666677777777


Q ss_pred             hhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc--cchhHHHHHHHHHHHHHHHHH
Q 022127          225 FSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL--GSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       225 ~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      ........+..|..| ++|+...++.+....+|..++..+.-.+.+..  ..|+..+.+..+..++..+..
T Consensus       118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            778888888899887 88999999999888888887776654443221  138878777776665544433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.27  E-value=0.00024  Score=58.86  Aligned_cols=237  Identities=16%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             hHHHHHhhhhhhHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHH-----HHHHHhc
Q 022127           19 SAIGICMGGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE-----LRLIQAG   91 (302)
Q Consensus        19 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~   91 (302)
                      ...+-++++.+.+.++|+..-..+.+ .|+  |..+.+...+.++..+..++.+|+++.+++..+.++     .+..+++
T Consensus       143 ~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (402)
T PF02487_consen  143 SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESE  221 (402)
T ss_pred             cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcccccccccc
Confidence            45688889999999999877655555 555  778888777777666666665654332221111111     0011111


Q ss_pred             Cccc-ccCCCCcchHHhhc-CccHHHHHHHHHhhhHHHHHHH-hhhhHHHH-HhhccchhhhhHHhhHHHHHHHhhhhhh
Q 022127           92 KSDS-VKKRNPPSLRHLLS-KLPSWTVIIANITNNWGYFVLL-SWMPIYFN-TVFNVNLKQAAWFSAVPWGTMAVSGYMA  167 (302)
Q Consensus        92 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~  167 (302)
                      ..++ .+...+...++-++ -|......+-.+..++..|..+ ...|...- +...-...+..++...+.++-.+++--.
T Consensus       222 ~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~  301 (402)
T PF02487_consen  222 TSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSL  301 (402)
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcce
Confidence            0000 01111122222221 1222223333333344444433 22233221 1111123444555566666666655332


Q ss_pred             hcccchhhccCCchhHHHHHHHHHhhhhhHHH---HHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh-hccchhh
Q 022127          168 GKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS---LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE-IAPDCAG  243 (302)
Q Consensus       168 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~  243 (302)
                      ..+  |+  |+       .++..+.-.+-.+.   -....+.++.+......+.-+...|..+...+..+.+ ..|++|-
T Consensus       302 ~~~--ri--r~-------lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE  370 (402)
T PF02487_consen  302 PFF--RI--RR-------LWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE  370 (402)
T ss_pred             eee--eh--hh-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH
Confidence            221  22  11       11111111111111   1112224455655555555566666666666555554 4458999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          244 FLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       244 ~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      .++|.......+|..++..+.-.+
T Consensus       371 Fslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  371 FSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999988888888777766544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.22  E-value=7.7e-06  Score=67.55  Aligned_cols=112  Identities=13%  Similarity=-0.071  Sum_probs=69.4

Q ss_pred             cchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc-ch----HHHHHHHHH
Q 022127          144 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SP----AVAAVLITI  218 (302)
Q Consensus       144 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~  218 (302)
                      +++...+.......++.++|.+..|++.||+|||+..-..  .    +-++++.+ ...+.... ++    .+....-.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~--l----iImIi~t~-~~~~s~~~~~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE--L----IIMIICSA-LSGLSVGTTSPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH--H----HHHHHHHH-HhccCCCCCCCcchhhHHHHHHHH
Confidence            4556677788888999999999999999999998754211  1    11112222 22222221 22    222233344


Q ss_pred             HHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHH
Q 022127          219 ALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTI  262 (302)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~  262 (302)
                      .+++.|.=+|...+..+|... +.||+-.+.....+..|...|..
T Consensus       154 LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i  198 (538)
T KOG0252|consen  154 LGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI  198 (538)
T ss_pred             hhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence            455666667888888888887 77888877766666655444433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.19  E-value=9.4e-05  Score=59.76  Aligned_cols=150  Identities=13%  Similarity=0.036  Sum_probs=104.4

Q ss_pred             HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchH
Q 022127          131 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA  210 (302)
Q Consensus       131 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (302)
                      ...+..-+++.-|.+..+..++......+..+++..+|.+.|++|||+...         ...+...+.-..-...++..
T Consensus        97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~---------~T~l~t~v~~~is~~spnf~  167 (528)
T KOG0253|consen   97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFN---------LTFLVTGVFGVISGASPNFA  167 (528)
T ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhh---------hhHHHHHHHHHhhcCCCCee
Confidence            333444456667888889999999999999999999999999999986432         34444444444445566666


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          211 VAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      .....-.+.+++.+. .|...+.-.|..| .+|..-+-+. ....+|......+.-....+.| |++-+...+....+..
T Consensus       168 ~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a  244 (528)
T KOG0253|consen  168 SLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAA  244 (528)
T ss_pred             hhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHH
Confidence            666666666555554 5666666677777 6777666555 6777788888777777777776 9988887775555554


Q ss_pred             HHH
Q 022127          290 IFW  292 (302)
Q Consensus       290 ~~~  292 (302)
                      .+.
T Consensus       245 ~f~  247 (528)
T KOG0253|consen  245 RFL  247 (528)
T ss_pred             HHH
Confidence            443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.15  E-value=0.0003  Score=60.27  Aligned_cols=167  Identities=10%  Similarity=-0.004  Sum_probs=97.7

Q ss_pred             hhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh---------hcCCchHHHHHHHHHHH---HHHHHHhhhcCC
Q 022127            6 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------TIGISGPFILFSSLGLL---WLSTWTSKVTND   73 (302)
Q Consensus         6 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~gwr~~f~~~~~~~~~---~~~~~~~~~~~~   73 (302)
                      .+..|.++.+|-.|..++...+.++|.+++..+..++.+         ...|.........+.++   ........+.+.
T Consensus       167 ~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~  246 (491)
T PF03219_consen  167 GFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKN  246 (491)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999888877         12455433222211111   111222223222


Q ss_pred             CCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhh----h
Q 022127           74 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ----A  149 (302)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~  149 (302)
                      ..+++...    +...++.+++.+.....+.+.++|+|.+..+++...+++.....+....-..+++.+. |+.+    .
T Consensus       247 vl~~~~~~----~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafm  321 (491)
T PF03219_consen  247 VLTDPRFY----PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFM  321 (491)
T ss_pred             ccCccccc----hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHH
Confidence            21111110    0001111111112223467788899999998888888888777776555555555443 3332    2


Q ss_pred             hHHhhHHHHHHHhhhhhhhcccchhhcc
Q 022127          150 AWFSAVPWGTMAVSGYMAGKASDSLIKA  177 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~  177 (302)
                      |-.....++...+..++++.+.+|+|-+
T Consensus       322 G~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  322 GKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3344455666666667778888887755

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.10  E-value=0.00034  Score=57.50  Aligned_cols=131  Identities=17%  Similarity=0.068  Sum_probs=83.5

Q ss_pred             HhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhh-----ccCCchhHHHHHHHHHhhhhhHHHHHHhhc-----ccch
Q 022127          140 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLI-----KAGYSLTLVRKIMQSIGFIGPGVSLLCLNY-----AKSP  209 (302)
Q Consensus       140 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  209 (302)
                      .+++.+..-.+.+.+...+.. ..++..|+.+|+.+     ||...+.. -......+..+.......+..     ..+.
T Consensus         8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~-G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWG-GTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHH-HHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            347888888887777766655 46899999999988     55433221 111111222222222222222     0122


Q ss_pred             HH----HHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022127          210 AV----AAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG  272 (302)
Q Consensus       210 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  272 (302)
                      +.    ....+.+.+.+.........+...|..| |+|+++.++.....-+|..++..+.|.+.|.+.
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            22    2233344444555556667788899887 889999999999999999999999999998865

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.04  E-value=0.00017  Score=61.41  Aligned_cols=130  Identities=15%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhh
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE  236 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
                      ++...+.++..|.++||+|||...         ........+......+..  ++..+... ..++.........++.+|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L---------~~~~~~~~l~~~~~~~~~--~~~~~~~~-l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVL---------LLPLFGTILPALCLLFQG--YWFFLLLG-LSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhH---------HHHHHHHHHhHHHHHHHH--HHHhhhcc-cccchhhhhhhhhhheee
Confidence            677888899999999999987432         122222222222222211  22222111 122333445566777788


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      ... ++|....|+.+.....+..++|.+.+.+.+..| +..++.+..+..+++.+...+..+++
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhccccc
Confidence            776 889999999999999999999999999998865 88899999998888887776665543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.92  E-value=0.00035  Score=57.93  Aligned_cols=126  Identities=14%  Similarity=0.066  Sum_probs=78.4

Q ss_pred             hHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc--c---ch
Q 022127          135 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA--K---SP  209 (302)
Q Consensus       135 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~  209 (302)
                      ..|.++.+| +...+-+...++.+..+...+.+-|+.||.|-|..        . .++...-+++...-...  +   +.
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a--------~-llgt~ln~iGa~Ir~iss~p~v~~~  137 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA--------L-LLGTVLNGIGAWIRLISSLPFVPPL  137 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH--------H-HHHHHHHHHHHHHhhhccCcccccc
Confidence            345666677 66777788889999999999999999999996521        1 23333333333222211  1   21


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhH----Hhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLN----IQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                      ... -+...+....+...+.....    ....+| ++|+++..+..+...+|.+++..+-..+..+.
T Consensus       138 f~~-~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  138 FRR-PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             chh-hhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            111 12233333333333333222    233444 99999999999998999999988888887654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.0047  Score=52.34  Aligned_cols=246  Identities=13%  Similarity=-0.012  Sum_probs=126.9

Q ss_pred             hhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc--------CCc-hHH----------HHHHHHHHHHH-
Q 022127            4 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--------GIS-GPF----------ILFSSLGLLWL-   63 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------gwr-~~f----------~~~~~~~~~~~-   63 (302)
                      --.+++|..+++++.+..++.......+.++|......+..+-        +-+ ..+          .+.+++..+.. 
T Consensus       123 qG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l  202 (461)
T KOG3098|consen  123 QGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVL  202 (461)
T ss_pred             cceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999998876654432211        111 111          11111111100 


Q ss_pred             -HHHHhhhcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh-
Q 022127           64 -STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV-  141 (302)
Q Consensus        64 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  141 (302)
                       +....+.|.   +..   ..+++..+     +...+......+++++|++..+....+.......-.....|..+.-. 
T Consensus       203 ~~i~~~~~p~---~~~---~~~~~~~~-----~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~  271 (461)
T KOG3098|consen  203 SIINFDFLPS---KDV---VNCKSSSE-----TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR  271 (461)
T ss_pred             HhhheeecCc---cch---hhhhhhcc-----ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence             001111111   100   00000000     00000011234567778887777666665555544555666555432 


Q ss_pred             -hccch-hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--c------c----
Q 022127          142 -FNVNL-KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--A------K----  207 (302)
Q Consensus       142 -~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~----  207 (302)
                       .+.+. ...+......+++..++....+.+.+|.++...      +..+.++..+.....++...  .      +    
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~------~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~  345 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR------KPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP  345 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc------CcchhHHHHHHHHHHHHHhccccccCCCCCCccc
Confidence             22222 233444455667777777777888877765532      22222333333333322211  1      0    


Q ss_pred             ------chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 022127          208 ------SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGY  266 (302)
Q Consensus       208 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~  266 (302)
                            +.....++..+.+..-.......+....+..|++|.++.++...-+.+++.++-.....
T Consensus       346 ~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  346 PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                  11223333344444444455666777788889999999999888888877776655554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.85  E-value=0.0013  Score=53.28  Aligned_cols=146  Identities=10%  Similarity=0.042  Sum_probs=91.8

Q ss_pred             cCccchhhHHHHHh-hhhhhHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHH
Q 022127           12 FPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI   88 (302)
Q Consensus        12 ~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   88 (302)
                      +|++..+.-++... ...++-.+.+..++..+.+..+.  ..+|....++..+..+++...-+|+..+..+.++ ..+..
T Consensus       155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~-~~~~~  233 (354)
T PF05631_consen  155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSS-LSGSF  233 (354)
T ss_pred             CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccc-hHHHH
Confidence            34444444444444 33444556666667777776654  7888887776666666555555565443221111 11111


Q ss_pred             HhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHH-hhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhh
Q 022127           89 QAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMA  167 (302)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~  167 (302)
                                  +..++.+.+||+++.+.+...+.....+.+. .|.|..-.+  + +....|++.+..+...++|+-+.
T Consensus       234 ------------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~-~~~P~GlIFssFM~a~MlGS~lf  298 (354)
T PF05631_consen  234 ------------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--D-EELPLGLIFSSFMVAMMLGSSLF  298 (354)
T ss_pred             ------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--C-CCCCchHHHHHHHHHHHHHHHHH
Confidence                        1246778889999999999999988888876 666654421  1 23457899999999999999887


Q ss_pred             hcccch
Q 022127          168 GKASDS  173 (302)
Q Consensus       168 g~l~dr  173 (302)
                      .++..+
T Consensus       299 ~~l~s~  304 (354)
T PF05631_consen  299 SRLLSK  304 (354)
T ss_pred             HHHHhC
Confidence            655443

>PRK03612 spermidine synthase; Provisional

Probab=97.84  E-value=0.0028  Score=55.24  Aligned_cols=160  Identities=11%  Similarity=0.057  Sum_probs=85.9

Q ss_pred             HHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhh
Q 022127          116 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  195 (302)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  195 (302)
                      +....+...++...........+...+|-+....+.+.+.+..+..+|+.+++++.++..++.      ...-..++.+.
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~   92 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHH
Confidence            344444555555556666666677778888888888999999999999988887753322110      00000111111


Q ss_pred             hHHHHHH---hhcccch-HHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhc-c
Q 022127          196 PGVSLLC---LNYAKSP-AVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQ-W  270 (302)
Q Consensus       196 ~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~  270 (302)
                      .....++   ..+.... ........+..++.|...|.......+...++.+...|-......+|+.+|+.+.+++.- .
T Consensus        93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~  172 (521)
T PRK03612         93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPR  172 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh
Confidence            0100111   1111111 111122222334445444444444433333345677888888999999999999888764 5


Q ss_pred             ccchhHHHHHH
Q 022127          271 LGSFQAFLTVT  281 (302)
Q Consensus       271 ~g~~~~~~~~~  281 (302)
                      .|.....+.+.
T Consensus       173 lG~~~t~~~~a  183 (521)
T PRK03612        173 LGLIRTAALTG  183 (521)
T ss_pred             cchHHHHHHHH
Confidence            66334444333

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.76  E-value=7.5e-05  Score=61.83  Aligned_cols=263  Identities=15%  Similarity=0.118  Sum_probs=130.7

Q ss_pred             hhhhhhcccCccchhh-HHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHHHHHhhh-------cCC
Q 022127            4 MSTLTSRWFPSHERAS-AIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFIL--FSSLGLLWLSTWTSKV-------TND   73 (302)
Q Consensus         4 ~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~--~~~~~~~~~~~~~~~~-------~~~   73 (302)
                      +-+++.|...++++.+ +++++.....+|..+|..++++.    +|+-.|-.  ....-+.+..+-..+.       +++
T Consensus       163 ~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~  238 (498)
T KOG0637|consen  163 CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIET  238 (498)
T ss_pred             HHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheec
Confidence            4467888888776666 99999999999999999988744    55433322  1111111111111111       111


Q ss_pred             ------CCCCCCCChHHHHHHHhcCcccccCCCCcchHH---hh--cCccHHHHHHHHHhhhHHHHHHHhhhhHHHH-Hh
Q 022127           74 ------PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRH---LL--SKLPSWTVIIANITNNWGYFVLLSWMPIYFN-TV  141 (302)
Q Consensus        74 ------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  141 (302)
                            |++++..++.        .+.+.+..+.....+   .+  ..|..+.+.+...+...+.+.+..+...++- +.
T Consensus       239 ~~~l~~~~~~~~s~~~--------~~~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~v  310 (498)
T KOG0637|consen  239 SESLWYPQEKPLSPKG--------TTARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREV  310 (498)
T ss_pred             ccccccccccCCCCCc--------ccccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence                  1111111110        000000000001111   11  2367888888888888888888877777763 34


Q ss_pred             hccchhh----------------hhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc
Q 022127          142 FNVNLKQ----------------AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  205 (302)
Q Consensus       142 ~g~s~~~----------------~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (302)
                      ++-|+..                -.+=..+..+...+.+....++.||+|.|+......+.         ..++..+...
T Consensus       311 y~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~---------f~~~~~~~gl  381 (498)
T KOG0637|consen  311 YGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNA---------FGLATGLAGL  381 (498)
T ss_pred             hCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHH---------HHHHHHHHhh
Confidence            5444321                12334456667777888888999999965433221111         1111111111


Q ss_pred             ccchHHHHHHHHHHHHH---------------------hhhhhhhhhhHHhh-hcc--chhhhHHHHHHHHHHHHHHHHH
Q 022127          206 AKSPAVAAVLITIALSL---------------------SSFSQAGYLLNIQE-IAP--DCAGFLHGIANSAGTLAAIIST  261 (302)
Q Consensus       206 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-~~p--~~~~~~~g~~~~~~~~g~~i~~  261 (302)
                      ..+.+....-....+..                     ....+...++..+. ..+  .-+|...|+.|....+...+..
T Consensus       382 ~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs  461 (498)
T KOG0637|consen  382 VLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVS  461 (498)
T ss_pred             hhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheee
Confidence            11111111111111100                     01111111222211 111  2257778888888888999888


Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHH
Q 022127          262 IGTGYFVQWLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       262 ~i~g~l~~~~g~~~~~~~~~~~~~~~  287 (302)
                      ...|.+.|..|+-+.+-...++..+.
T Consensus       462 ~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  462 LGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             ccccchhhhcCCcchhHHHHHHHHHH
Confidence            88888888877555544444444433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.67  E-value=0.0035  Score=51.12  Aligned_cols=245  Identities=13%  Similarity=0.002  Sum_probs=123.7

Q ss_pred             ccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-------hcCCc---------hHHHHHHHHHHHHHHHHHhhhcCCC
Q 022127           11 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGIS---------GPFILFSSLGLLWLSTWTSKVTNDP   74 (302)
Q Consensus        11 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~~~~p   74 (302)
                      ...+++.|.+......+.+.|..++..+--.+.+       ..+|.         ...+..+.+.++...+..+.-+|.+
T Consensus       161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~  240 (510)
T KOG3574|consen  161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND  240 (510)
T ss_pred             hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3456777777777777777777666544322221       11333         2233445555554444444322222


Q ss_pred             CCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhh
Q 022127           75 CNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  154 (302)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  154 (302)
                      ++   .++++...+.         +...-.+++++-|.+..++......-.++.+-....+.-+.| .|.+.++.+....
T Consensus       241 ~~---~~~e~~~~i~---------~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v  307 (510)
T KOG3574|consen  241 ES---VDEELELGIH---------ESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAV  307 (510)
T ss_pred             hh---hhhhhhcCHH---------HHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeee
Confidence            21   1111100000         011135677888888888888888888887777777777777 7999988877764


Q ss_pred             HHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhh-HHHHHHhhcccc-----h-HHHHHHHHHHHHHhhhh-
Q 022127          155 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP-GVSLLCLNYAKS-----P-AVAAVLITIALSLSSFS-  226 (302)
Q Consensus       155 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-  226 (302)
                      ...-..++.....|++.....+-....   |....=+..... ............     + ...+...+...+...+. 
T Consensus       308 ~~~plqI~l~~~~gk~ta~~~pl~~~l---ka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~t  384 (510)
T KOG3574|consen  308 PLVPLQIALPLYIGKWTAGPRPLNVFL---KAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVT  384 (510)
T ss_pred             ehhhHHHhhhhhheeecCCCCcchHHH---HhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHH
Confidence            444444444444444433211111111   111111111111 111111111111     1 11122221122222222 


Q ss_pred             --hhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022127          227 --QAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL  271 (302)
Q Consensus       227 --~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  271 (302)
                        +....+..+++.+ ...|+.+.+.|+..++|+-.=..+..++.|..
T Consensus       385 s~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  385 SMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence              2223333455555 77899999999999999988888888887753

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.65  E-value=0.0065  Score=52.04  Aligned_cols=148  Identities=15%  Similarity=0.043  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhcc-----chhhhhHHhhHHHHHHHhh-hhhhhcccchhhccCCchhHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV-----NLKQAAWFSAVPWGTMAVS-GYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      ++....+..++..+.++..     --++|....     +.+...++-....+...+. .++.+++++|++|++.....  
T Consensus         8 k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~--   80 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTV--   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHH--
Confidence            4445555555544443332     223554544     3356666666665655555 78899999999987543211  


Q ss_pred             HHHHHHhhhhhHHHHHHhhcccc--------------------------hHHHHHHHHHHHHHhhhhhh-hhhhHHhhhc
Q 022127          186 KIMQSIGFIGPGVSLLCLNYAKS--------------------------PAVAAVLITIALSLSSFSQA-GYLLNIQEIA  238 (302)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (302)
                        .............++.+..+.                          .|.........-.......+ ..+..++|..
T Consensus        81 --~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        81 --ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             --HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence              000111111111111111111                          12222223333334444444 6688889988


Q ss_pred             c-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          239 P-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       239 p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      . ++..+-.++.....++|..+++.+..++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 88899999999999999999999998876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.00011  Score=60.99  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=100.7

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      ++........+...++...-..+.|+|+++ .|.+.+..+....+..+.+.+..++.|..+||...|...    ||..+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR----RRPfI~  106 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR----RRPFIL  106 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc----ccchHH
Confidence            344555566666677777778999999999 899998888888888889999999999999975433222    333334


Q ss_pred             HhhhhhHHHHHHhhccc--------c-----hHHHHHHHHH----HHHHhhhhhhhhhhHHhhhcc-chhhh-HHHHHHH
Q 022127          191 IGFIGPGVSLLCLNYAK--------S-----PAVAAVLITI----ALSLSSFSQAGYLLNIQEIAP-DCAGF-LHGIANS  251 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p-~~~~~-~~g~~~~  251 (302)
                      .+.....+.++++.+..        +     ....+....+    .-+.......+.-+...|+.. +++.+ +++....
T Consensus       107 ~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~  186 (498)
T KOG0637|consen  107 AGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSF  186 (498)
T ss_pred             HhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHH
Confidence            55555555555544421        1     1122222222    223444556677788888775 55555 8888888


Q ss_pred             HHHHHHHHHHHHhhhh
Q 022127          252 AGTLAAIISTIGTGYF  267 (302)
Q Consensus       252 ~~~~g~~i~~~i~g~l  267 (302)
                      +..+|+.+|-.+.++.
T Consensus       187 f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  187 FMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHhcceeeeeccccc
Confidence            8888888877766643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.62  E-value=0.0012  Score=54.57  Aligned_cols=159  Identities=16%  Similarity=0.090  Sum_probs=99.6

Q ss_pred             HHhhhhHHHHHhhcc---ch----hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHH
Q 022127          130 LLSWMPIYFNTVFNV---NL----KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLC  202 (302)
Q Consensus       130 ~~~~~~~~~~~~~g~---s~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (302)
                      ..+++|.|++++.+.   ++    ...++..++..+...+-+++.|.++|+.|+||..       +. ....+..+....
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~-------~~-~f~~i~i~~~~~  105 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKF-------FG-FFTAIGIISTFL  105 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchH-------HH-HHHHHHHHHHHH
Confidence            446778888876554   33    3445666777888888889999999999998532       22 333333333333


Q ss_pred             hhccc---chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh--hhhh--------
Q 022127          203 LNYAK---SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT--GYFV--------  268 (302)
Q Consensus       203 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~--g~l~--------  268 (302)
                      +.+.+   +.+..+..+.+............++.+.++.+ ++.++.++.-...+++|+.+.-...  +.+.        
T Consensus       106 L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~  185 (438)
T COG2270         106 LWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITI  185 (438)
T ss_pred             HHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeE
Confidence            33332   33444455555566666777777888888877 6677888888888888776554442  1111        


Q ss_pred             --------ccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          269 --------QWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       269 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                              |.. .-+..+.+.++-.++..+-.+...+
T Consensus       186 ~l~~l~~~~~~-~~ri~~~l~A~W~li~~iPm~~~v~  221 (438)
T COG2270         186 ILLGLPPADGE-DVRITGLLAALWWLLFALPMILNVH  221 (438)
T ss_pred             EeeccCccccc-cchhHHHHHHHHHHHHHhHHHhccc
Confidence                    111 3566777777777766665555443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.60  E-value=0.035  Score=47.11  Aligned_cols=165  Identities=9%  Similarity=0.019  Sum_probs=89.9

Q ss_pred             hhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-C---------CchHHHHHHHHHHHHHHHHHhhhcC-CCC
Q 022127            7 LTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-G---------ISGPFILFSSLGLLWLSTWTSKVTN-DPC   75 (302)
Q Consensus         7 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g---------wr~~f~~~~~~~~~~~~~~~~~~~~-~p~   75 (302)
                      ...|....+|-.|..+.++.+.+++..++..+..++.++. .         -+..+.+.+..+++...+..+ +.+ .++
T Consensus       172 faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~-~~r~il~  250 (509)
T COG3202         172 FANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRY-INRNVLT  250 (509)
T ss_pred             HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccc
Confidence            4578888899999999999999999999999988887521 1         233444444444443333333 322 111


Q ss_pred             CCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhH---H
Q 022127           76 NSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW---F  152 (302)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~---~  152 (302)
                      ++... .++   ..++.++..+..-..+.+.+.|+|.++.+.+...+++.+.+.+....-.-.++.+..+.+..++   +
T Consensus       251 ~~~f~-~~~---~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~  326 (509)
T COG3202         251 DPLFY-LRA---KKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRF  326 (509)
T ss_pred             Ccchh-HHH---hcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHH
Confidence            11100 000   0000000111112235677888899988888888888777666533333333323333333222   3


Q ss_pred             hhHHHHH-HHhhhhhhhcccchhhc
Q 022127          153 SAVPWGT-MAVSGYMAGKASDSLIK  176 (302)
Q Consensus       153 ~~~~~~~-~~~~~~~~g~l~dr~~~  176 (302)
                      ....++. .++...+++.+.+|.|-
T Consensus       327 ~~~tgvv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         327 QIWTGVVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhH
Confidence            3344444 34444667777777764

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.48  E-value=0.0065  Score=54.43  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             chhhhhhhcccCcc---chhhHHHHHhhhhhhHHHHHHHHHHHHHhhc-------CCchHHHHHHHHHHHHHHHHH
Q 022127            2 PAMSTLTSRWFPSH---ERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFSSLGLLWLSTWT   67 (302)
Q Consensus         2 p~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------gwr~~f~~~~~~~~~~~~~~~   67 (302)
                      |+..+...|.++++   +|-+.+.++..+.++|..+++.+.+++.+..       +|...|.+.++..++..++..
T Consensus       104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            55667788888754   3677889999999999999999999887543       699999998887776554443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.46  E-value=0.022  Score=48.40  Aligned_cols=254  Identities=15%  Similarity=0.102  Sum_probs=120.8

Q ss_pred             cCccchhhHHHHHhhhhhhHHHHHHHHHHHHHh-----hc--------C---CchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022127           12 FPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-----TI--------G---ISGPFILFSSLGLLWLSTWTSKVTNDPC   75 (302)
Q Consensus        12 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~--------g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~   75 (302)
                      ..+++++.+......+.+.|..++..+--.+-+     .+        |   -..-..+.|.+-++..+...++.+|+|.
T Consensus       147 Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~  226 (544)
T PF13000_consen  147 LSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPH  226 (544)
T ss_pred             cChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccc
Confidence            456777888777777777777776655433321     10        1   1112233355555555555555666654


Q ss_pred             CCCCCChH-----H--HHHHHhcCcccc--cCCCCc-------chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 022127           76 NSPFVSKS-----E--LRLIQAGKSDSV--KKRNPP-------SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFN  139 (302)
Q Consensus        76 ~~~~~~~~-----~--~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (302)
                      .+...+.+     +  .+....+.++++  .+++..       ...+++|-|++..+.+..+..-.++..-..-...=+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl  306 (544)
T PF13000_consen  227 SESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL  306 (544)
T ss_pred             cccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            22111100     0  000000000100  011111       2335677788888888888877777666555555566


Q ss_pred             HhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCch-------------hH-----------HHHHHHH-Hhhh
Q 022127          140 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSL-------------TL-----------VRKIMQS-IGFI  194 (302)
Q Consensus       140 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~-------------~~-----------~~~~~~~-~~~~  194 (302)
                      | .|++.++.+....+.    ....++.|+++.|+-+.+..+             ..           .+.++.. .+=+
T Consensus       307 E-kG~~KE~LAl~~li~----~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL  381 (544)
T PF13000_consen  307 E-KGLSKEDLALLVLID----FPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRL  381 (544)
T ss_pred             H-cCCCHHHhHHHHHHh----hhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHH
Confidence            6 799998877765443    344444444444443221100             00           0111100 0001


Q ss_pred             -hhHHHHHHhhccc--c--hHHHHHHHHHHHHHhhh----hhhhhhhHHhhhc-cchhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          195 -GPGVSLLCLNYAK--S--PAVAAVLITIALSLSSF----SQAGYLLNIQEIA-PDCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       195 -~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-p~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                       ...+........+  .  +...............+    .+....+.-+.+. |..-|+.+-+.|+..|+|+.--..+.
T Consensus       382 ~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~v  461 (544)
T PF13000_consen  382 VAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFV  461 (544)
T ss_pred             HHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHH
Confidence             1111111111111  1  11122222222222232    2233333335554 58899999999999999988766666


Q ss_pred             hhhhcc
Q 022127          265 GYFVQW  270 (302)
Q Consensus       265 g~l~~~  270 (302)
                      =++.|.
T Consensus       462 L~lVD~  467 (544)
T PF13000_consen  462 LWLVDY  467 (544)
T ss_pred             HHHhhh
Confidence            566553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.46  E-value=0.012  Score=49.19  Aligned_cols=161  Identities=10%  Similarity=-0.024  Sum_probs=96.7

Q ss_pred             HHhhhhHHHHHh-hccchhhhhHHhhHH-HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc
Q 022127          130 LLSWMPIYFNTV-FNVNLKQAAWFSAVP-WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  207 (302)
Q Consensus       130 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (302)
                      ...++..|+.+. .|++.++..--.-+. .=.....-+....+.|.++.|         .++++..+...+...++.+.+
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~~~   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLFGT   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHC
Confidence            347777888776 788887765332222 223344456677889999754         333455554445555555556


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhh-hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc-ccchhHHHHHHHHHH
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQE-IAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQW-LGSFQAFLTVTAGLY  285 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~  285 (302)
                      +....-+.-+..+... ..-...++++-. +.|++--++.+......-+|..++..++-.+.+. ..++....++.....
T Consensus        93 sv~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~  171 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASV  171 (412)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5544444333333322 223344455533 4447767778877777777777777777766652 235777878877777


Q ss_pred             HHHHHHHHhhccCcc
Q 022127          286 FVTTIFWNLYSTGER  300 (302)
Q Consensus       286 ~~~~~~~~~~~~~~~  300 (302)
                      .++.+..+++++.+|
T Consensus       172 ~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  172 SLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHcCCCCc
Confidence            777777777766543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.41  E-value=0.0015  Score=41.19  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             hHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHh
Q 022127          124 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  203 (302)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (302)
                      ..+.+.+...+|...+| .++|..+.+++.+...++..+|.+...++.++.+++         .+...+.+...+....+
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHH
Confidence            34566777888887777 899999999999999999999999999888775432         22236666666677666


Q ss_pred             hcccchH
Q 022127          204 NYAKSPA  210 (302)
Q Consensus       204 ~~~~~~~  210 (302)
                      ...++.+
T Consensus        75 a~~~~~~   81 (85)
T PF06779_consen   75 ALTHSFW   81 (85)
T ss_pred             HHHhchH
Confidence            6665543

Note that many members are hypothetical proteins.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.39  E-value=0.055  Score=45.95  Aligned_cols=178  Identities=13%  Similarity=0.210  Sum_probs=106.7

Q ss_pred             cHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  191 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  191 (302)
                      ..+.+....++..+..-...+-.|.++.+.+.-+..-.+.....-.+..++.++..|...||..|.+....  -...--.
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~--~l~~Qn~   80 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRT--SLVVQNL   80 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHH--HHHHHHH
Confidence            34667888888888888888999999999776666666666667777888888889999999987764311  1111112


Q ss_pred             hhhhhHHHHHHhhc-cc----chHHHHHHHHHHHHH---hhhhhhhhhhHH-hh----hc---cchhhhHHHHHHHHHHH
Q 022127          192 GFIGPGVSLLCLNY-AK----SPAVAAVLITIALSL---SSFSQAGYLLNI-QE----IA---PDCAGFLHGIANSAGTL  255 (302)
Q Consensus       192 ~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~---p~~~~~~~g~~~~~~~~  255 (302)
                      +...++..+..+.. ..    +.+....++.+....   .-.........+ .|    +.   |+.....++.+.-+-.+
T Consensus        81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            22232222222222 11    122222222221111   111111111111 11    22   34456667777777778


Q ss_pred             HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022127          256 AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       256 g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      ...++|.+.|.+.+..+ ......+.++..+++..+=
T Consensus       161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vE  196 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVE  196 (432)
T ss_pred             HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999998765 7777777777777777653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.39  E-value=0.039  Score=44.21  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             HHHhhhhHHHHHhhccch--hhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc
Q 022127          129 VLLSWMPIYFNTVFNVNL--KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA  206 (302)
Q Consensus       129 ~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (302)
                      ......+.+..+ .+.+.  ...+...+...+...++.+..|.+.||.|+|+.       ..  .+......+.......
T Consensus        20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~--~~~~~~~~~~~~~~~~   89 (338)
T COG0477          20 LLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-------LI--IGLLLFLLGTLLLALA   89 (338)
T ss_pred             hHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-------HH--HHHHHHHHHHHHHHhC
Confidence            344455555555 44444  467888888888888988999999999977621       11  2221112222222222


Q ss_pred             cc--hHHHHHHHHHHHHHhhhhhhhhhhHHhhhccc--hhhhHHHHHHH-HHHHHHHHHHHHhhhhhcc-ccchhHHHHH
Q 022127          207 KS--PAVAAVLITIALSLSSFSQAGYLLNIQEIAPD--CAGFLHGIANS-AGTLAAIISTIGTGYFVQW-LGSFQAFLTV  280 (302)
Q Consensus       207 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~  280 (302)
                      .+  ...........+...+...+.......+..|+  +++...+.... ...++..++|.+.+.+.+. ...|+..+..
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            22  33333333334445555667777888888885  78888888888 5777888888777776654 1236665544


Q ss_pred             HHHHH
Q 022127          281 TAGLY  285 (302)
Q Consensus       281 ~~~~~  285 (302)
                      .....
T Consensus       170 ~~~~~  174 (338)
T COG0477         170 AALLG  174 (338)
T ss_pred             HHHHH
Confidence            44433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.19  E-value=0.00087  Score=56.06  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             chhhhhhhcccCcc---chhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 022127            2 PAMSTLTSRWFPSH---ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST   65 (302)
Q Consensus         2 p~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~   65 (302)
                      |...++.+|.++++   +|.+.+.++..+.++|..++..+.+++.++.||.+.|.+.++..++..+.
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            45677888888865   47788899999999999999999999999999999999977766654443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR01272 gluP glucose/galactose transporter

Probab=97.10  E-value=0.0061  Score=49.60  Aligned_cols=88  Identities=11%  Similarity=0.065  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccc---------------
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWL---------------  271 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~---------------  271 (302)
                      +....++...+.+.+.+...+..+.++.+..| |++++..++...+..+|..++|.+.+.+....               
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            44555666667777788888888999998877 78999999999999999999999999887321               


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhh
Q 022127          272 GSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       272 g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .+|+.++++.+.+.++..+++...
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            247778886666655555444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.95  E-value=0.08  Score=38.04  Aligned_cols=108  Identities=12%  Similarity=0.050  Sum_probs=70.9

Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  231 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (302)
                      -.++......++.++.+.+.+++|.|         +.+.++.+...+-.... +.++.+..+..-.+.+++.+..+...-
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence            34556667777888888899999865         23234444443333332 234455555555566666666676666


Q ss_pred             hHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022127          232 LNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQ  269 (302)
Q Consensus       232 ~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  269 (302)
                      .++.+..+ +.+++..|+...+.+.+..+|..+.-.+.+
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66766665 778999999998888888888776655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.014  Score=52.11  Aligned_cols=162  Identities=10%  Similarity=0.097  Sum_probs=107.9

Q ss_pred             HHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc--
Q 022127          129 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA--  206 (302)
Q Consensus       129 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  206 (302)
                      +.....-.-++++++++..+.|++.+..-++..+......+...|.-|.++.         ..+.++.+++.++....  
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I---------g~G~~~m~lgsll~alPHf  184 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI---------GIGLVLMGLGSLLFALPHF  184 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcccee---------eechhHHHHHHHHHhChHH
Confidence            5544445556778999999999999999999988888888887777655432         23444444333332211  


Q ss_pred             ------------------c----------------------------chHHHHHHHHHHHHHhhhhhhhhh----hHHhh
Q 022127          207 ------------------K----------------------------SPAVAAVLITIALSLSSFSQAGYL----LNIQE  236 (302)
Q Consensus       207 ------------------~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  236 (302)
                                        +                            +....+..++++.+..|..-.+.+    +++-|
T Consensus       185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD  264 (735)
T KOG3626|consen  185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD  264 (735)
T ss_pred             hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence                              0                            001133445555555555444443    44555


Q ss_pred             hcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc------------------ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          237 IAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW------------------LGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       237 ~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      ... ++.+...|+..++..+|-++|=.+++.+...                  .|.|+..|++++.+.++..+.++.+.+
T Consensus       265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            555 6678889999988888888888888776531                  256888999999999999988888876


Q ss_pred             Cc
Q 022127          298 GE  299 (302)
Q Consensus       298 ~~  299 (302)
                      +.
T Consensus       345 ~l  346 (735)
T KOG3626|consen  345 EL  346 (735)
T ss_pred             cC
Confidence            53

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.65  E-value=0.0029  Score=53.96  Aligned_cols=67  Identities=25%  Similarity=0.347  Sum_probs=57.2

Q ss_pred             CchhhhhhhcccCccchhhHHHHHhh-hhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 022127            1 MPAMSTLTSRWFPSHERASAIGICMG-GFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT   67 (302)
Q Consensus         1 ~p~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~   67 (302)
                      |.+..+|+++..||+.|+.+.++... ..++|--+|.++||.+.+.+|=|..|.+.++.+++.+++..
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            34677899999999999999998876 56899999999999999999999999998888877655433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.37  E-value=0.42  Score=40.99  Aligned_cols=56  Identities=5%  Similarity=-0.081  Sum_probs=34.8

Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhc-cchhhhHHHHHHHHHHHHHHHHHHH
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIA-PDCAGFLHGIANSAGTLAAIISTIG  263 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~g~~~~~~~~g~~i~~~i  263 (302)
                      +.+...+...+.+...|...+.......+.. +++|-.+..+....-.+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555666666665555555554444 4777777777777777777777665

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.32  E-value=0.00058  Score=59.66  Aligned_cols=165  Identities=11%  Similarity=0.064  Sum_probs=1.6

Q ss_pred             HHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh
Q 022127          125 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  204 (302)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (302)
                      ....++..-.-+-++++++++..+.|++.+..-++..+..++..+..+|..|.++        + ..+.++.+++.+++.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprw--------i-g~g~~~~~~g~~l~~   86 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRW--------I-GIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce--------e-eecHHHHHHHHHHHh
Confidence            4444444334445667799999999999999999999999888888877543322        1 345555554444332


Q ss_pred             ccc----------------------------------------------chHHHHHHHHHHHHHhhhhhhhhh----hHH
Q 022127          205 YAK----------------------------------------------SPAVAAVLITIALSLSSFSQAGYL----LNI  234 (302)
Q Consensus       205 ~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~  234 (302)
                      ..+                                              +.......+.++....|....+.+    +++
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            210                                              001123444555555555544444    445


Q ss_pred             hhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcc---------------------ccchhHHHHHHHHHHHHHHHHH
Q 022127          235 QEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQW---------------------LGSFQAFLTVTAGLYFVTTIFW  292 (302)
Q Consensus       235 ~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~---------------------~g~~~~~~~~~~~~~~~~~~~~  292 (302)
                      -|..+ ++.+...|+......+|-++|=.+++...+.                     .|.|...|++.+.+.++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554 6677888888888888877777777766531                     2457778888888888887777


Q ss_pred             HhhccC
Q 022127          293 NLYSTG  298 (302)
Q Consensus       293 ~~~~~~  298 (302)
                      +.++|+
T Consensus       247 ~~FPk~  252 (539)
T PF03137_consen  247 FFFPKK  252 (539)
T ss_dssp             ------
T ss_pred             HcCCcc
Confidence            776653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.26  E-value=0.092  Score=44.01  Aligned_cols=84  Identities=8%  Similarity=-0.090  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHhhhcc-c---hhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Q 022127          211 VAAVLITIALSLSSFSQAGYLLNIQEIAP-D---CAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYF  286 (302)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  286 (302)
                      ...+.+.+...+.|..-+...+...|.++ +   ++.+.........++|+.+++.+.+++.++.| |...|.+.++..+
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~  113 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGML  113 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHH
Confidence            44555555666777778888888888665 3   36678888899999999999999999998887 9999999999999


Q ss_pred             HHHHHHHhh
Q 022127          287 VTTIFWNLY  295 (302)
Q Consensus       287 ~~~~~~~~~  295 (302)
                      ++.+.++.-
T Consensus       114 ~~~~~f~~~  122 (372)
T PF00854_consen  114 LALIVFLSG  122 (372)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhC
Confidence            888766543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.19  E-value=0.056  Score=44.97  Aligned_cols=134  Identities=7%  Similarity=-0.109  Sum_probs=60.3

Q ss_pred             hhhhHHHHHhhccc---hhhhhHHhhH-HHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhccc
Q 022127          132 SWMPIYFNTVFNVN---LKQAAWFSAV-PWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  207 (302)
Q Consensus       132 ~~~~~~~~~~~g~s---~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (302)
                      ...|-+..+..+-.   ....-..... .++...+|.+...++-++-. |........|.+.+-.+..+-.-- .-....
T Consensus       264 siFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~-r~l~i~v~lR~lfiPlF~~cn~~~-~~v~~~  341 (406)
T KOG1479|consen  264 SIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDP-RKLTIPVLLRLLFIPLFLLCNYPP-LPVVFE  341 (406)
T ss_pred             EecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCC-ceehHHHHHHHHHHHHHHHhccCC-CCceec
Confidence            35666665543221   2222333334 67778888777666654442 222211111111111111000000 001123


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      +.+..+....+.+...|...+....+..+..|.+...+.|....+.-.++.....+.+++
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            445555666666666666666666666665653344444554444444444444444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.0012  Score=51.64  Aligned_cols=153  Identities=11%  Similarity=-0.030  Sum_probs=85.2

Q ss_pred             cHHHHHHHHHhhhHHHHHHH--hhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHH
Q 022127          112 PSWTVIIANITNNWGYFVLL--SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  189 (302)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  189 (302)
                      ++..+.+..++....++...  .-+..+++...+.+..+..++++.+...+++-.+++|++.||...-+.        ..
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~--------gt  113 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRL--------GT  113 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhH--------HH
Confidence            44444544444444443332  223344444455666677888899999999999999999998633211        11


Q ss_pred             HHhhhhhHHHHHHhh---cccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          190 SIGFIGPGVSLLCLN---YAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       190 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      .+-+....++-+.+.   ..+..|.....-.+.+.+.-.....-+.+....+. |+.+.++|+......+|+.+--.+.+
T Consensus       114 ii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~  193 (459)
T KOG4686|consen  114 IILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMP  193 (459)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecH
Confidence            111111122221111   12333433333333222222111222333344455 88999999999999999998888888


Q ss_pred             hhhcccc
Q 022127          266 YFVQWLG  272 (302)
Q Consensus       266 ~l~~~~g  272 (302)
                      ++.|..+
T Consensus       194 ~ly~~~~  200 (459)
T KOG4686|consen  194 FLYDTMG  200 (459)
T ss_pred             HHHHHHH
Confidence            8887644

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.86  E-value=0.67  Score=36.56  Aligned_cols=179  Identities=9%  Similarity=0.042  Sum_probs=91.7

Q ss_pred             hHHhhcCccHHHHHHHHHhhhHHHHHHH-hhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchh
Q 022127          104 LRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLT  182 (302)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  182 (302)
                      .+.+..|+++.++-....+.....+.+. .|.|..--+..+   .--|.+.+.+.+.+++|+-+..++..|-..|--.  
T Consensus       241 a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~--  315 (454)
T KOG4332|consen  241 ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVES--  315 (454)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccch--
Confidence            4456667777666655555555555543 555543212112   2347778888888888887776666554433211  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhhcc---cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHH
Q 022127          183 LVRKIMQSIGFIGPGVSLLCLNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~  258 (302)
                       ...+...+......+.+......   .++....+.+++.-.+.|..+|...-+-.+..| +.|++.+-....--++-.-
T Consensus       316 -ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvC  394 (454)
T KOG4332|consen  316 -YMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVC  394 (454)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhh
Confidence             11111111111111111111111   234445666777777888888888887788888 6677765554333333222


Q ss_pred             HHHHHhhhhhcc--ccchhHHHHHHHHHHHHHHHH
Q 022127          259 ISTIGTGYFVQW--LGSFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       259 i~~~i~g~l~~~--~g~~~~~~~~~~~~~~~~~~~  291 (302)
                      ++-...  =.|.  ++ -+..|-++.....++.+.
T Consensus       395 lvLynl--h~~~~p~~-tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  395 LVLYNL--HVDAFPTT-TRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hhheec--ccccCccc-cchhhhhhHHHHHHHHHH
Confidence            211110  0111  12 346677777766666544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.65  E-value=0.097  Score=41.78  Aligned_cols=63  Identities=14%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             hhcccchHHHHHHHHHHHHHhhhhhhhhh-hHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          203 LNYAKSPAVAAVLITIALSLSSFSQAGYL-LNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      ..+.++.+...++...-+...|..+...+ .+..|..|++|-.+++.....-.+|-.++..+.=
T Consensus       336 ~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  336 YWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            34556666555555555555555555554 4445688899999999888777777776665543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.85  E-value=0.92  Score=40.33  Aligned_cols=171  Identities=12%  Similarity=0.026  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .....-.+...++++....+..|+.+.++.+...+.-.............+.+++++|-+--|.        ..+.++.+
T Consensus        41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry--------~tI~~~s~  112 (571)
T KOG1237|consen   41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY--------FTINIGSL  112 (571)
T ss_pred             HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH--------HHHHHHHH
Confidence            3444444556666666777888888889988877777777777777777788999999875432        22223333


Q ss_pred             hhHHHHHHhhcc--------------------c--chHH---HHHHHHHHHHHhhhhhhhhhhHHhhhcc-----c--hh
Q 022127          195 GPGVSLLCLNYA--------------------K--SPAV---AAVLITIALSLSSFSQAGYLLNIQEIAP-----D--CA  242 (302)
Q Consensus       195 ~~~~~~~~~~~~--------------------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~--~~  242 (302)
                      +..+++..+...                    .  +...   ....+.+...+.+..-+.....-.|-++     +  ..
T Consensus       113 i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  113 ISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence            333222221110                    0  1111   1111111112233333444444444333     1  23


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          243 GFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       243 ~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      ..-+.......+.|..++..+.-+.-|..+ |...|.+..+...++.++++.
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence            466777888888999999999888877765 999999998888888777654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.66  E-value=2.3  Score=35.75  Aligned_cols=179  Identities=9%  Similarity=0.030  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      ++...+.........+.+.+-.+.|.++..+.++  +........+.+.+...+.-.+--|...|...  +.+-.+....
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~--~~~~~l~~~~   95 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRT--RVGYLLSLIA   95 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            4444555555555666666666666555333333  33333344444444444444443333333100  0111111111


Q ss_pred             hhhhHHHHHHhhccc-----chHHHHHHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 022127          193 FIGPGVSLLCLNYAK-----SPAVAAVLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYF  267 (302)
Q Consensus       193 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l  267 (302)
                      .+......+......     ..........+..++.+...+..+....+.++|+....++=.+..+.+.+...-..-...
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~  175 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAF  175 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhc
Confidence            111111111111111     122233334444455556666667777777777655444333333333322222222222


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          268 VQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .|...+-..-|.+..+..+++.+++..+
T Consensus       176 ~~~~~sA~~yF~~s~~~~llC~i~y~~l  203 (406)
T KOG1479|consen  176 SDSRTSALIYFITSTVILLLCFVLYLVL  203 (406)
T ss_pred             CCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence            2222223334455555555666555533

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.90  E-value=2.8  Score=35.41  Aligned_cols=126  Identities=13%  Similarity=-0.011  Sum_probs=71.0

Q ss_pred             HhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhh
Q 022127          152 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  231 (302)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (302)
                      ....-.+...+..+.+.+..+|+.-+       .|..  ....+...+++...+.++.+.-++...+.....+..-....
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~-------~Ri~--~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL  134 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYW-------IRIL--ICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFL  134 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccch-------HHHH--HHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHH
Confidence            44445566777778888888887543       2333  34445556666666667766666666666555555444444


Q ss_pred             hHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-chhHHHHHHHHHHHHHHHH
Q 022127          232 LNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-SFQAFLTVTAGLYFVTTIF  291 (302)
Q Consensus       232 ~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~  291 (302)
                      .+.. .+++   ...+-.......++.+|+...-.+.+ .| +.+..+.+...+.++-.+.
T Consensus       135 ~lt~-~y~~---~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~  190 (402)
T PF02487_consen  135 SLTH-FYGK---SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLS  190 (402)
T ss_pred             HHHH-hcCc---cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHH
Confidence            4433 4443   22344444445566667666655554 33 3566676666555444433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.73  E-value=0.99  Score=35.32  Aligned_cols=26  Identities=12%  Similarity=-0.266  Sum_probs=15.6

Q ss_pred             HHHHHhhhHHHHHHHhhhhHHHHHhh
Q 022127          117 IIANITNNWGYFVLLSWMPIYFNTVF  142 (302)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (302)
                      .+.........++.+..=..|.+++-
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhCc
Confidence            33344445566677666667777753

The region concerned is approximately 280 residues long.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.51  E-value=0.023  Score=46.20  Aligned_cols=55  Identities=7%  Similarity=0.048  Sum_probs=2.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHhhhc-cchhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          210 AVAAVLITIALSLSSFSQAGYLLNIQEIA-PDCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      +...+...+.++..|...+.......+.. |++|..+-.+....-.+|-.+|..+.
T Consensus       249 ~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  249 AWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ------------------HHHH----------------------------------
T ss_pred             HHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555556655555554444433 46676666666666666666665543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.90  E-value=2.6  Score=35.24  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=41.6

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccc-----hhhccCC
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASD-----SLIKAGY  179 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~  179 (302)
                      +++..+.+.+..+........ .+|..++. .|.|-.+.+.......=  .--.+++..++|     |+||||.
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccc
Confidence            466777777877777665555 88888885 67776665554332211  112356777778     9999874

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.88  E-value=0.33  Score=38.21  Aligned_cols=43  Identities=12%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             HHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCC
Q 022127          137 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGY  179 (302)
Q Consensus       137 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  179 (302)
                      |+.+.+|+...+.|.+........++...+.|-++||.|||+-
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra  104 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA  104 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc
Confidence            4455589999999988877666777777888999999999863

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.09  E-value=0.49  Score=37.05  Aligned_cols=66  Identities=20%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             hhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022127            8 TSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC   75 (302)
Q Consensus         8 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~   75 (302)
                      ..+.|| ++||++.|+.-...+++..+-..+...+.+.-.-+. +...+....+..+....+++..|+
T Consensus       121 ~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f-ll~la~~~~~v~l~~~~~vr~~~~  186 (250)
T PF06813_consen  121 CVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF-LLFLAVLPAVVCLVAMFFVRPVPP  186 (250)
T ss_pred             HHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHHHhhheeccCC
Confidence            346777 579999999999999999887777666655422333 344455454444444444555443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.04  E-value=11  Score=33.74  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             chhhhhhhcccC---c-cc--hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 022127            2 PAMSTLTSRWFP---S-HE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST   65 (302)
Q Consensus         2 p~~~~~i~~~~~---~-~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~   65 (302)
                      |...++-+|-++   + ++  +...+.++....+.|..++..+..++-++.||.+.|.+..+...+..++
T Consensus       171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI  240 (571)
T ss_pred             CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence            344455566676   2 22  3467899999999999999999999988999999999987766664443

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=89.70  E-value=3.3  Score=36.58  Aligned_cols=35  Identities=11%  Similarity=0.088  Sum_probs=15.9

Q ss_pred             chhhhhHHhhHHHHHHHhhhhhhhc----ccchhhccCC
Q 022127          145 NLKQAAWFSAVPWGTMAVSGYMAGK----ASDSLIKAGY  179 (302)
Q Consensus       145 s~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~~~~~~  179 (302)
                      ++..-|.+....-+..++++.++|+    +-..++.+++
T Consensus       291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W  329 (521)
T PF02990_consen  291 SPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKW  329 (521)
T ss_pred             cccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCce
Confidence            4443444444444444444444444    4444555443

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=88.58  E-value=14  Score=31.12  Aligned_cols=170  Identities=14%  Similarity=0.179  Sum_probs=85.5

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +....+...++...+.--...+-...|+.+..|-|..-.+.....-+....+...+.|...|+..|+|..    +..+..
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi----~~~L~l  102 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVI----QTWLLL  102 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHH----HHHHhh
Confidence            3344556667777766666666677777775554544444444444555556666777788999887654    222222


Q ss_pred             --HhhhhhHHHHHHhhccc-----chHHHHHHHHHHHHHhhhhhhhhhhHH------hh----hcc-chhhh---HHHHH
Q 022127          191 --IGFIGPGVSLLCLNYAK-----SPAVAAVLITIALSLSSFSQAGYLLNI------QE----IAP-DCAGF---LHGIA  249 (302)
Q Consensus       191 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~p-~~~~~---~~g~~  249 (302)
                        .+.+.++...+.+...+     +......+..+.......  ....+.+      .|    +.. +.++.   ..+..
T Consensus       103 qNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI--~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnati  180 (503)
T KOG2601|consen  103 QNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAI--AVLASLAGTILIERDWVVVMSEGESPSVLTNMNATI  180 (503)
T ss_pred             ccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHH--HHHHHhhheEEecccEEEEecCCCCHHHHhhcchhh
Confidence              23333333222222222     222223333332221111  1111111      11    111 22333   33555


Q ss_pred             HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q 022127          250 NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFV  287 (302)
Q Consensus       250 ~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  287 (302)
                      ...-.....+.|.+.|.+.+..+ .+..-..+++-..+
T Consensus       181 r~iDq~tn~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  181 RGIDQSTNLLAPVITGLIITFVS-LRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhhhhchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence            55666778899999999987654 55544444443333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.50  E-value=15  Score=31.66  Aligned_cols=27  Identities=11%  Similarity=-0.068  Sum_probs=14.6

Q ss_pred             HHHHHHHHhhhhhhhhhhHHhhhccch
Q 022127          215 LITIALSLSSFSQAGYLLNIQEIAPDC  241 (302)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (302)
                      ...+.+...+...+..........|++
T Consensus       112 ~v~~~g~~~~~~q~s~~gla~~fp~~~  138 (437)
T TIGR00939       112 SVVIINSGMALLQGSLFGLAGVFPSTY  138 (437)
T ss_pred             HHHHHHhhhhhhcccchhhcccCCHHH
Confidence            333444455555556666666555554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=88.41  E-value=1  Score=35.78  Aligned_cols=60  Identities=40%  Similarity=0.661  Sum_probs=46.6

Q ss_pred             chhhhhhhcccCc-cchhhHHHHHhh-hhhhHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHH
Q 022127            2 PAMSTLTSRWFPS-HERASAIGICMG-GFHLGNVVGLLLTPIMLST--IGISGPFILFSSLGLL   61 (302)
Q Consensus         2 p~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~gwr~~f~~~~~~~~~   61 (302)
                      |...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.........
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            5667889999988 678999999888 5888999999877777654  6899977765555543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.47  E-value=13  Score=32.23  Aligned_cols=110  Identities=14%  Similarity=-0.003  Sum_probs=74.7

Q ss_pred             hhHH-hhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhh
Q 022127          149 AAWF-SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  227 (302)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (302)
                      +|+. .++......+..++.+.+.|+++.|         +.+.++..........+.+ .|.+.....-.+.+++.++.+
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K---------~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw  120 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPK---------WALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLW  120 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHH---------HHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHhee
Confidence            4444 5677788888899999999999854         4444555444443333333 345555666666666677767


Q ss_pred             hhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          228 AGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       228 ~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      ...-.++.+..+ +...+..++...+...+..+|..+.-.+.
T Consensus       121 ~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  121 TGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             cccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            777677777665 77888889988888888888876655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-35

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  131 bits (332), Expect = 2e-35
 Identities = 48/298 (16%), Positives = 99/298 (33%), Gaps = 11/298 (3%)

Query: 2   PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVG-LLLTPIMLSTIGISGPFILFSSLGL 60
           P        W+   ER   + +     ++G  +  LL    M           + +   +
Sbjct: 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 197

Query: 61  LWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPP----SLRHLLSKLPSWTV 116
           L      + + + P +       E +       +   ++        ++++L     W +
Sbjct: 198 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI 257

Query: 117 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIK 176
            IAN+      + +L W P Y   V +  L +++W   +          + G  SD + +
Sbjct: 258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 317

Query: 177 AGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQE 236
                T V      +  +     +  +N A +P V  + + +   L         L+  E
Sbjct: 318 GNRGATGVFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373

Query: 237 IAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFW 292
           +AP   AG   G     G L  ++ ++   GY V + G    F+ +  G      +  
Sbjct: 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.91
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.69
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.65
2xut_A	524	Proton/peptide symporter family protein; transport	99.64
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.63
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=2e-30  Score=219.98  Aligned_cols=286  Identities=15%  Similarity=0.190  Sum_probs=215.9

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |+..+++.|++|+++|++++++.+.+.++|.+++|.+++++.+..| ||+.|++.+++.++..++.++.+||+|++.+..
T Consensus       138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (451)
T 1pw4_A          138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP  217 (451)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred             chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence            5678899999999999999999999999999999999999989998 999999999988887777777788877654322


Q ss_pred             ChHHHHH--HHhcCcccccCCCCc--chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           81 SKSELRL--IQAGKSDSVKKRNPP--SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      ++++.+.  .++..++++++....  ..++.+++|.++...+..++..........++|.|+++.+|.++.+.+...+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  297 (451)
T 1pw4_A          218 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  297 (451)
T ss_dssp             SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred             ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            1111000  000000001111111  257788999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHhhhhhhhcccchh--hccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhh
Q 022127          157 WGTMAVSGYMAGKASDSL--IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLL  232 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  232 (302)
                      .++.+++.++.|++.||+  ++|        +.+.....+...+++..+...+  +.+.......+.+.+.+...+....
T Consensus       298 ~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  369 (451)
T 1pw4_A          298 EYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL  369 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence            999999999999999998  764        2222223232224444444442  4444444444455555555666677


Q ss_pred             HHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127          233 NIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       233 ~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ...|..| ++|+++.|+.+...++ |..++|.+.|.+.|..| ++..|++.+++.+++.++.+...
T Consensus       370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888 7799999999999999 99999999999999987 89999998888888777665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.96  E-value=3.2e-27  Score=199.58  Aligned_cols=268  Identities=10%  Similarity=0.033  Sum_probs=201.8

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH-hhcC-------------------------CchHHHHH
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIG-------------------------ISGPFILF   55 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------wr~~f~~~   55 (302)
                      |+..+++.|++|+|+|++++++.+.+.++|..+++.+++.+. +..+                         ||+.|++.
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  215 (438)
T 3o7q_A          136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence            567889999999999999999999999999999999999998 5554                         99999887


Q ss_pred             HHHHHHHHHHHHhh-hcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhh
Q 022127           56 SSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  134 (302)
Q Consensus        56 ~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
                      +.+.++..++.++. .||+++++++.              +++++.+.++++++|+|+++...+..++..........+.
T Consensus       216 ~~~~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 3o7q_A          216 VAIVLLVALLIMLTKFPALQSDNHSD--------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL  281 (438)
T ss_dssp             HHHHHHHHHHHHHCCCCCCTTTCCCC--------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccccccc--------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87776655544432 23322211110              0111122357889999999999999998888888999999


Q ss_pred             hHH-HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHH
Q 022127          135 PIY-FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAA  213 (302)
Q Consensus       135 ~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (302)
                      |.| +++.+|.++.+.+...+...++..++.++.|++.||+++|+        . ...+.++..+........++.....
T Consensus       282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T 3o7q_A          282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--------V-LAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------H-HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------H-HHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            999 88878999999999999999999999999999999998652        2 2344445555555555555544333


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          214 VLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      . ..+.+++.+...+.......|..|++++++.++.. ...+++.++|.+.|.+.|..|+++..|.+.+++.++..+..+
T Consensus       353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          353 A-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             H-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3 34445556666777788877878866888888877 678999999999999999987788888877666555544433


Q ss_pred             h
Q 022127          294 L  294 (302)
Q Consensus       294 ~  294 (302)
                      .
T Consensus       431 ~  431 (438)
T 3o7q_A          431 F  431 (438)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.93  E-value=1.9e-26  Score=190.94  Aligned_cols=255  Identities=10%  Similarity=0.003  Sum_probs=195.0

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS   81 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   81 (302)
                      |...+++.|++|+|+|++++++.+.+.++|..++|.+++++.++.|||+.|++.+++.++..+...+.+||+++++++. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  185 (375)
T 2gfp_A          107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-  185 (375)
T ss_dssp             HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-
T ss_pred             hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-
Confidence            5677899999999999999999999999999999999999999899999999988877776654555566655432111 


Q ss_pred             hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127           82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA  161 (302)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~  161 (302)
                                      ++.+.++++.+|+|+++...+..++..........+.|.|+++.+|.|+.+.+...+...++..
T Consensus       186 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  249 (375)
T 2gfp_A          186 ----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF  249 (375)
T ss_dssp             ----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence                            1123356788999999999999999888999999999999999899999999999999999999


Q ss_pred             hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc
Q 022127          162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP  239 (302)
Q Consensus       162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (302)
                      ++.++.+++.||.+++        ....................  .++.+.......+.+++.+...+.......|..|
T Consensus       250 ~~~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  321 (375)
T 2gfp_A          250 FGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP  321 (375)
T ss_dssp             HHHHHHHTTTTHHHHH--------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            9999999999999752        11101110111111111111  1233444444555556667777888888889888


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Q 022127          240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA  282 (302)
Q Consensus       240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~  282 (302)
                      ++|+++.|+.+...++|..++|.+.|.+.+..+ +...+...+
T Consensus       322 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~  363 (375)
T 2gfp_A          322 FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHH
Confidence            999999999999999999999999999987654 766666543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=1.1e-24  Score=186.80  Aligned_cols=290  Identities=13%  Similarity=0.052  Sum_probs=189.1

Q ss_pred             chhhhhhhcccCccc--hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC--
Q 022127            2 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS--   77 (302)
Q Consensus         2 p~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~--   77 (302)
                      |+..++++|++|+++  |++++++.+.+.++|..++|.+++.+.++.|||+.|++.++..++..+...+..++..+++  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            567889999999988  7788898999999999999999999999999999999987766665554444333322111  


Q ss_pred             --C-CCChHHHHHHHhc--------------------Ccccc--------------------cCCCCcchHHhhcCccHH
Q 022127           78 --P-FVSKSELRLIQAG--------------------KSDSV--------------------KKRNPPSLRHLLSKLPSW  114 (302)
Q Consensus        78 --~-~~~~~~~~~~~~~--------------------~~~~~--------------------~~~~~~~~~~~~~~~~~~  114 (302)
                        + ..++++.+...+.                    .+.++                    .++.+....+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence              1 1111221111000                    00000                    000011111111223345


Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      ...+..+...........++|.|.++..+.+..+.+.......+...++.++.+++.||++||+...    ...+..+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence            5555555555566666788889999878888778888899999999999999999999999886432    111223444


Q ss_pred             hhHHHHHHhhcc---------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127          195 GPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT  264 (302)
Q Consensus       195 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~  264 (302)
                      +..++...+...         .+.+.......+.+.+.+...+..+....|..| ++|+++.|+.+...++|..++|.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444333321         134444455555556666667777888889888 7799999999999999999999999


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          265 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       265 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      +.+.+. + +...+...+++.+++.++.+++.+
T Consensus       443 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          443 TLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             GGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998775 3 667777777777776666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.91  E-value=6.2e-24  Score=178.28  Aligned_cols=274  Identities=14%  Similarity=0.077  Sum_probs=180.5

Q ss_pred             hhhhcccCc--cchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127            6 TLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS   83 (302)
Q Consensus         6 ~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   83 (302)
                      ..+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+.. +..+|+++++.+  ++
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~  198 (417)
T 2cfq_A          123 PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL-FFAKTDAPSSAT--VA  198 (417)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS-CSSCCCCSCSSC--SS
T ss_pred             HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH-HHcCcccccccc--cc
Confidence            344455543  456777888888999999999999999886 589999998776654443333 333333321110  00


Q ss_pred             HHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhcc---chhhhhHHhhHHHHHH
Q 022127           84 ELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV---NLKQAAWFSAVPWGTM  160 (302)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~  160 (302)
                      ++      .++++++....++++++|+|+++...+..+.....+.....++|.|+++.++.   +....+...+...++.
T Consensus       199 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  272 (417)
T 2cfq_A          199 NA------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN  272 (417)
T ss_dssp             SS------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHH
T ss_pred             cc------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            00      00001111122456788999988777665555555556667789888775542   3445577777777888


Q ss_pred             HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-
Q 022127          161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-  239 (302)
Q Consensus       161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  239 (302)
                      .++.+..|+++||+++|+        .+ ..+..+..+........++.+.......+.....+...+.......|..| 
T Consensus       273 ~~~~~~~g~l~dr~g~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  343 (417)
T 2cfq_A          273 ASIMFFAPLIINRIGGKN--------AL-LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHHHHHHHHHHHCHHH--------HH-HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHhcHHH--------HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            899999999999998752        22 24444444545455545554444333333333344444555677888888 


Q ss_pred             chhhhHHHHH-HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          240 DCAGFLHGIA-NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       240 ~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                      +.|+++.+.. +...++|+.++|.+.|.+.|..| +...|.+.+++.+++.++.+...+++
T Consensus       344 ~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            8899999994 88888999999999999999876 88889888888888777665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=1.7e-21  Score=166.86  Aligned_cols=288  Identities=13%  Similarity=0.048  Sum_probs=177.5

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--------cCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------IGISGPFILFSSLGLLWLSTWTSKVTND   73 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~   73 (302)
                      |...++++|+.|+++|++..++.+.+..+|..+++.++..+...        .+||+.+.+..+..++. +...+..||+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peS  223 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPES  223 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCC
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCC
Confidence            56778999999999999999999999999999999988877643        34677666655554443 4455568888


Q ss_pred             CCCC--CCCChHHHHHHHhcCc------------c-cccCCCCcchHHhhcCccHHHHHHHH-HhhhHHHHHHHhhhhHH
Q 022127           74 PCNS--PFVSKSELRLIQAGKS------------D-SVKKRNPPSLRHLLSKLPSWTVIIAN-ITNNWGYFVLLSWMPIY  137 (302)
Q Consensus        74 p~~~--~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  137 (302)
                      |+..  +...++.++..++...            + .+++++.......++.++........ +......+....+.|.+
T Consensus       224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (491)
T 4gc0_A          224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV  303 (491)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence            8621  1111111111100000            0 00001111222334444444333333 33344445555666666


Q ss_pred             HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh---c-ccchHHHH
Q 022127          138 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN---Y-AKSPAVAA  213 (302)
Q Consensus       138 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  213 (302)
                      .++ .+.+..+........++...++.++.+++.||+|||+..         ..+.....++++.+.   . ..+.....
T Consensus       304 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~  373 (491)
T 4gc0_A          304 FKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ---------IIGALGMAIGMFSLGTAFYTQAPGIVAL  373 (491)
T ss_dssp             HHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH---------HHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh---------ccchHHHHHHHHHHHHHHhcccchHHHH
Confidence            665 777777777777888899999999999999999987422         122222222222211   1 22222223


Q ss_pred             HHHHHHHHHhhh-hhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-----chhHHHHHHHHHHH
Q 022127          214 VLITIALSLSSF-SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-----SFQAFLTVTAGLYF  286 (302)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-----~~~~~~~~~~~~~~  286 (302)
                      ....+....... ..+..+.+..|++| +.|+++.|+.+..+++++.+++.+.+.+.+...     .....|++.+++++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~  453 (491)
T 4gc0_A          374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  453 (491)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            333333332233 23455788899999 889999999999999999999988887754321     14456788888888


Q ss_pred             HHHHHHHhhccCcc
Q 022127          287 VTTIFWNLYSTGER  300 (302)
Q Consensus       287 ~~~~~~~~~~~~~~  300 (302)
                      ++.++.+++.+|+|
T Consensus       454 ~~~i~~~~~~PETk  467 (491)
T 4gc0_A          454 LAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHCCCCT
T ss_pred             HHHHHHHheecCCC
Confidence            88877777766654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=1e-18  Score=150.81  Aligned_cols=289  Identities=11%  Similarity=-0.009  Sum_probs=154.6

Q ss_pred             chhhhhhhcccCccchhhHHHH---HhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGI---CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP   78 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~   78 (302)
                      |+..+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+..|||+.|++.+++.++..+...+..++.+++++
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP  207 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            5678899999999999876666   9999999999999999999999999999999888766655444332222211111


Q ss_pred             CCCh--HHHHHH----HhcCcc-cc-------------------------------------cCCCCcchH---------
Q 022127           79 FVSK--SELRLI----QAGKSD-SV-------------------------------------KKRNPPSLR---------  105 (302)
Q Consensus        79 ~~~~--~~~~~~----~~~~~~-~~-------------------------------------~~~~~~~~~---------  105 (302)
                      +.++  +..+..    ++...+ ++                                     +++.+.+++         
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (524)
T 2xut_A          208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH  287 (524)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred             CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence            0000  000000    000000 00                                     000000110         


Q ss_pred             ---HhhcCccHHHHHHHHHhhhHHHHH-HHhhhhHHHHHhhccch---hhhhHHhhHHHHHHHhhhhhhhccc----chh
Q 022127          106 ---HLLSKLPSWTVIIANITNNWGYFV-LLSWMPIYFNTVFNVNL---KQAAWFSAVPWGTMAVSGYMAGKAS----DSL  174 (302)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~----dr~  174 (302)
                         +..+.++.+....... .....+. ...+.+.+.....+.+.   ...+.......++..++.++.+++.    ||.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (524)
T 2xut_A          288 PDAAVDGVRSVLRILVLFA-LVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERM  366 (524)
T ss_dssp             CSSSSTTTTTHHHHHHHHT-TSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred             cHhHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence               0011223322222222 2222221 11222233222222222   1355555555556666666666664    333


Q ss_pred             hccCCchhHHHHHHHHHhhhhhHHHHHHhhcc---------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhh
Q 022127          175 IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGF  244 (302)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~  244 (302)
                      ++|...     +.....+..+.+++++.+...         .+.+.......+.+.+.+...+..+....|..| ++||+
T Consensus       367 ~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~  441 (524)
T 2xut_A          367 GVKLTA-----LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT  441 (524)
T ss_dssp             ----CC-----HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred             CCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence            322111     112234555555555544432         234444445555556666667777888888888 88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccc-ch---------hHHHHHHHHHHHHHHHHHHhhc
Q 022127          245 LHGIANSAGTLAAIISTIGTGYFVQWLG-SF---------QAFLTVTAGLYFVTTIFWNLYS  296 (302)
Q Consensus       245 ~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~~~  296 (302)
                      ++|+.+...++|+.++|.+.|.+.+..+ +|         ...|.+.+++.+++.++.+++.
T Consensus       442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          442 IMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             THHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987431 01         2336666666666666554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.69  E-value=3.3e-15  Score=127.90  Aligned_cols=175  Identities=13%  Similarity=0.093  Sum_probs=145.9

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh-----hccchhhhhHHhhHHHHHHHhhhhhhhcccch-hhccCCchhHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTV-----FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLV  184 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~  184 (302)
                      +.++...+..++....++....+++.|+++.     +|.|..+.++..+...++..++.++.|+++|| +|||+      
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence            4567777888888888899999999999998     89999999999999999999999999999999 89652      


Q ss_pred             HHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-ch--hhhHHHHHHHHHHHHHHHHH
Q 022127          185 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DC--AGFLHGIANSAGTLAAIIST  261 (302)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~~~~~g~~~~~~~~g~~i~~  261 (302)
                         .+..+.++..++.......++.+...+...+.+.+.+...+...+.+.|..| ++  |+.+.+..+...++|..++|
T Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  163 (491)
T 4aps_A           87 ---AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP  163 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence               3346666666677777777777777777777777777788888899999887 66  77888889999999999999


Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          262 IGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       262 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .+.+.+.++.| |+..|++.++..+++.+.....
T Consensus       164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999876 9999999887777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.65  E-value=1.8e-14  Score=121.35  Aligned_cols=173  Identities=10%  Similarity=0.002  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127          113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  192 (302)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  192 (302)
                      +....+..+.............|.+.++ +|.|..+.+++.+...++..++.++.|+++||+|||+         ....+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~---------~l~~~   97 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA---------GIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH---------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH---------HHHHH
Confidence            3444455555555556666777775555 9999999999999999999999999999999999753         22355


Q ss_pred             hhhhHHHHHHh---hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127          193 FIGPGVSLLCL---NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV  268 (302)
Q Consensus       193 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  268 (302)
                      .++..++.+..   ...++.+...+...+.+.+.+...+.......|..| ++|+++.++.+...++|..++|.+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556665555   566777777777777778888888888999999888 88999999999999999999999999998


Q ss_pred             -ccccc------------------------hhHHHHHHHHHHHHHHHHHHhh
Q 022127          269 -QWLGS------------------------FQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       269 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                       +..+.                        |+..|.+.++..++..++....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  229 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT  229 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             65554                        8888887777666655555444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.64  E-value=1.2e-14  Score=125.47  Aligned_cols=175  Identities=10%  Similarity=-0.030  Sum_probs=140.2

Q ss_pred             CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhc------cchhhhhHHhhHHHHHHHhhhhhhhcccchh-hccCCchh
Q 022127          110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN------VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLT  182 (302)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~  182 (302)
                      +|.++...+..++.....+....++|.|+++.+|      .|+.+.+++.+...++..++.++.|+++||+ |+|+.   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~---   87 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT---   87 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence            3567778888888888888999999999998889      9999999999999999999999999999999 97632   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHH---HHHHHHHHH
Q 022127          183 LVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGI---ANSAGTLAA  257 (302)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~---~~~~~~~g~  257 (302)
                           + ..+.++..++.+.....+ +.+.......+.+.+.+...+...+...|..| ++|++..+.   .+...++|.
T Consensus        88 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           88 -----I-LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             -----H-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             -----H-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence                 2 345555556666666666 66666666667777777778888889999887 778766555   889999999


Q ss_pred             HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127          258 IISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       258 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      .++|.+.+.+.+..| |+..|.+.++..+++.+....
T Consensus       162 ~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          162 FFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998776 999999888877776655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.63  E-value=2.6e-15  Score=127.01  Aligned_cols=176  Identities=13%  Similarity=0.036  Sum_probs=139.2

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127          111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  190 (302)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  190 (302)
                      +.++...+..+............+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+         .+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~---------~l~   96 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV---------FLP   96 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH---------HHH
Confidence            445555566666666666667778877777 6 89999999999999999999999999999999752         334


Q ss_pred             HhhhhhHHHHHHhhc----ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127          191 IGFIGPGVSLLCLNY----AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG  265 (302)
Q Consensus       191 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g  265 (302)
                      .+.++..++.+....    .++.+...+...+.+.+.+...+...+.+.|..| ++|+++.|+.+....+|..++|.+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A           97 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666    6677777777777777788888888899999888 88999999999999999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127          266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST  297 (302)
Q Consensus       266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
                      .+.+..|+|+..|++.+++.++..++..+..+
T Consensus       177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            98877655999999888877766655544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.62  E-value=6.7e-15  Score=121.58  Aligned_cols=169  Identities=11%  Similarity=-0.013  Sum_probs=133.8

Q ss_pred             HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127          115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  194 (302)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  194 (302)
                      .+.+..+............+|.+.++ +|.|+.+.++..+...++..++.+..|+++||+|||+...         .+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~   73 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL---------VGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH---------HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHH
Confidence            44555666666666677778877666 8999999999999999999999999999999999987653         4444


Q ss_pred             hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022127          195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS  273 (302)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~  273 (302)
                      ...++.......++.+.......+.+.+.+...+.......|..| ++|+++.+..+....+|..++|.+.+.+.+..| 
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  152 (375)
T 2gfp_A           74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence            555555555555666666666666777777777888888899887 889999999999999999999999999998776 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 022127          274 FQAFLTVTAGLYFVTTIFWNL  294 (302)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~  294 (302)
                      |+..+.+.++..++..+....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A          153 WRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999888777766653333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.33  E-value=3e-13  Score=113.28  Aligned_cols=173  Identities=13%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      +.+|||+++......+...........++|.|+++.+|.|+.+.+.+.+...++..+++++.|+++||+|||+...    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~----   77 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL----   77 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH----
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH----
Confidence            3678999998888888888787788899999999889999999999999999999999999999999999985431    


Q ss_pred             HHHHHHhhhhhHH---HHHHhhcccchH-HHHHHHHHHHHHhhhhhhhhhhHHhhhcc---chhhhHHHHHHHHHHHHHH
Q 022127          186 KIMQSIGFIGPGV---SLLCLNYAKSPA-VAAVLITIALSLSSFSQAGYLLNIQEIAP---DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       186 ~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~g~~~~~~~~g~~  258 (302)
                           .+.....+   ........+... .......+.....+...+.......+..+   ++++...|..+....+|..
T Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  152 (417)
T 2cfq_A           78 -----WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA  152 (417)
T ss_dssp             -----HHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence                 11111111   111111111000 00111111111122222222333333332   3456677788778899999


Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127          259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT  289 (302)
Q Consensus       259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  289 (302)
                      ++|.+.+++.+. + ++..|++.++..++..
T Consensus       153 ~~~~l~~~l~~~-~-~~~~f~~~~~~~~~~~  181 (417)
T 2cfq_A          153 LGASIVGIMFTI-N-NQFVFWLGSGCALILA  181 (417)
T ss_dssp             HHHHHHHHHHHH-C-SHHHHTTTTTTTTTHH
T ss_pred             HHHHHHHHHHHh-c-hhHHHHHHHHHHHHHH
Confidence            999999999874 4 7888876655544333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.04  E-value=1.1e-08  Score=87.30  Aligned_cols=135  Identities=11%  Similarity=-0.008  Sum_probs=96.7

Q ss_pred             hhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh------------------ccc
Q 022127          146 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN------------------YAK  207 (302)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~  207 (302)
                      ..+.+++.+...++..+|+++.|+++||+|||+.         +.++.++..++.+...                  ..+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~---------l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~  124 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS---------LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG  124 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh
Confidence            3456778888899999999999999999997632         2344444444433332                  345


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-------chhHHHH
Q 022127          208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-------SFQAFLT  279 (302)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-------~~~~~~~  279 (302)
                      +....++.-.+.+.+.+...+....++.|..| ++|+...+..+.....|..+++.+.....+..+       .|+..+.
T Consensus       125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (491)
T 4gc0_A          125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA  204 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence            66777777788888888888888999999988 889999999999999998888887776654321       2444554


Q ss_pred             HHHHHHHHHH
Q 022127          280 VTAGLYFVTT  289 (302)
Q Consensus       280 ~~~~~~~~~~  289 (302)
                      +.....++..
T Consensus       205 ~~~~~~~~~~  214 (491)
T 4gc0_A          205 SECIPALLFL  214 (491)
T ss_dssp             TTHHHHHHHH
T ss_pred             hhhhhhhhhh
Confidence            4444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.82
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.58
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-29  Score=209.32  Aligned_cols=287  Identities=16%  Similarity=0.197  Sum_probs=210.7

Q ss_pred             chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127            2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV   80 (302)
Q Consensus         2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (302)
                      |+..+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+.+.++..++.+...+|.|++.+..
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP  214 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc
Confidence            56778999999999999999999999999999999998887765 48999999999988888888888787777654432


Q ss_pred             ChHHHHHHH----hcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127           81 SKSELRLIQ----AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  156 (302)
Q Consensus        81 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  156 (302)
                      ..++.+...    ++..+++....+...++.+++|.++......++.....+....+.|.|+++.++.+..+.+......
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T d1pw4a_         215 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  294 (447)
T ss_dssp             SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence            222211110    1111112222333466788899999999999999999999999999999998999999999999999


Q ss_pred             HHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHH
Q 022127          157 WGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNI  234 (302)
Q Consensus       157 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
                      .+...++.++.|++.||.++++..      ........+..........  ..+.+.......+.++..+...+......
T Consensus       295 ~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  368 (447)
T d1pw4a_         295 EYAGIPGTLLCGWMSDKVFRGNRG------ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA  368 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCHH------HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhccccccc------cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877432      1111222222222222222  33444444555555555555566667778


Q ss_pred             hhhcc-chhhhHHHHHHHHHHHH-HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127          235 QEIAP-DCAGFLHGIANSAGTLA-AIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY  295 (302)
Q Consensus       235 ~~~~p-~~~~~~~g~~~~~~~~g-~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (302)
                      .|..| +.++++.|+.+...+++ ..++|.+.|.+.|+.| +...+.+.+++.+++.++...+
T Consensus       369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            88888 78999999999998885 5678999999999987 8888887777777666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.3e-18  Score=142.90  Aligned_cols=265  Identities=14%  Similarity=0.055  Sum_probs=180.4

Q ss_pred             cchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHHHHHHhcCcc
Q 022127           15 HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSD   94 (302)
Q Consensus        15 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   94 (302)
                      +++.+..+........+..+++.+++.+.+. +|+..+........+..++..+..+|++++.+..+++++         
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  203 (417)
T d1pv7a_         134 RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA---------  203 (417)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS---------
T ss_pred             hhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh---------
Confidence            3456677888888899999999999888754 566666666666666666666666666654432211110         


Q ss_pred             cccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHH---hhccchhhhhHHhhHHHHHHHhhhhhhhccc
Q 022127           95 SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNT---VFNVNLKQAAWFSAVPWGTMAVSGYMAGKAS  171 (302)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  171 (302)
                      ++++......++..+++..+....................+.+...   ..+.+....+.......++..++....+++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  283 (417)
T d1pv7a_         204 NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII  283 (417)
T ss_dssp             CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             hcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhh
Confidence            0111122234445555555555444444444444433333333322   2344556677777888888999999999999


Q ss_pred             chhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHH
Q 022127          172 DSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIAN  250 (302)
Q Consensus       172 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~  250 (302)
                      ||.+++         .....+..+..+........++.+.......+.+.+.+...+......+|..| ++|+++.|+..
T Consensus       284 ~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (417)
T d1pv7a_         284 NRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             HHHCHH---------HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cccccc---------cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHH
Confidence            999864         22245666666667777777777777777777777777778888888899888 88999999864


Q ss_pred             -HHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127          251 -SAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE  299 (302)
Q Consensus       251 -~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (302)
                       ....+|..++|.+.|++.|+.| ++..+++.+++.++..++..+..+++
T Consensus       355 ~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         355 CFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence             5567999999999999999987 88899888888877777666555544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.4e-14  Score=120.16  Aligned_cols=156  Identities=15%  Similarity=0.097  Sum_probs=119.0

Q ss_pred             HhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcc----
Q 022127          131 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA----  206 (302)
Q Consensus       131 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  206 (302)
                      ....| +++| +|.|..+.|++.+...++..++.++.|+++||+|||+         ....+.++..++.++....    
T Consensus        45 ~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~---------~~~~~~~~~~~~~~~~~~~~~~~  113 (447)
T d1pw4a_          45 ALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV---------FLPAGLILAAAVMLFMGFVPWAT  113 (447)
T ss_dssp             HHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---------HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHhhccccchhh
Confidence            33334 5566 7999999999999999999999999999999999753         2235555555554444332    


Q ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHH
Q 022127          207 KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLY  285 (302)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~  285 (302)
                      ++.........+.+.+.+...+.......|..| ++|+++.|+.+....+|..++|.+.+.+.+..++|+..+++.+.+.
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~  193 (447)
T d1pw4a_         114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA  193 (447)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhH
Confidence            344555566666666677777888888888887 8899999999999999999999999988877767898888887777


Q ss_pred             HHHHHHHHhhcc
Q 022127          286 FVTTIFWNLYST  297 (302)
Q Consensus       286 ~~~~~~~~~~~~  297 (302)
                      ++..++.+.+.+
T Consensus       194 ~~~~~~~~~~~~  205 (447)
T d1pw4a_         194 ILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcc
Confidence            766666555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.6e-13  Score=109.90  Aligned_cols=177  Identities=13%  Similarity=0.025  Sum_probs=112.7

Q ss_pred             HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127          106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  185 (302)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  185 (302)
                      +.+|||++|.+.+..++..........++|.|+++.+|.|+.+.|++.+...++..++.++.|+++||+|||+...    
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~----   77 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL----   77 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH----
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH----
Confidence            3578999999999999998888888899999999889999999999999999999999999999999999985321    


Q ss_pred             HHHHHHhhhhhHHHHHHhhcccchHHH----HHHHHHHHHHhhhhhhhhhhHHh-hhcc--chhhhHHHHHHHHHHHHHH
Q 022127          186 KIMQSIGFIGPGVSLLCLNYAKSPAVA----AVLITIALSLSSFSQAGYLLNIQ-EIAP--DCAGFLHGIANSAGTLAAI  258 (302)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~p--~~~~~~~g~~~~~~~~g~~  258 (302)
                           .+.....++........+....    ...........+........... ...+  +++....+........+..
T Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (417)
T d1pv7a_          78 -----WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA  152 (417)
T ss_dssp             -----HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccc
Confidence                 2222222223222222221111    11111111122222222222222 2222  3345566777777888889


Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127          259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN  293 (302)
Q Consensus       259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  293 (302)
                      ++|.+.+.+.+..  +...+........+..++..
T Consensus       153 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~  185 (417)
T d1pv7a_         153 LGASIVGIMFTIN--NQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc--ccccccchhhHHHHHHHHHH
Confidence            9999999988764  34444444444433333333