Citrus Sinensis ID: 022129


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
MLQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
ccccccccccccccccccEEEEEEcccccccEEccccHHHHHHHHHcccccccEEEEEEcccccccccEEEEcccccEEEEEcccccEEEEEEEEEccccEEEEccEEccccccccHHHHHHHHccccccccccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEcccEEEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccc
ccccccccccccccccccEccccccccccEEEEEcccHHHHHHHHHHcccccccEEEEEcccccccccEEEEcccccEEEEEcccccEEEEEEEEEccEEEEEEccEEcccccccccHHHHHHHccccccccccccccEEEEEcccEEEEEccccHccccccccccccEEEccccccccEEEEEEEEcccHHHccccccccccccccccccccEEEEEEEccccEEEEEcccEEEEccccHHHHHHHHHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEHHHccccc
mlqsqkprrrcegtamgaivldlrpgvgigpfslgmpiceafasieqqpniydvvhvkyfdeeplkldiiisfpdhgfhlrfdpwsqRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALfgptfpgvydkerSVYMLfypglsfafpipaqyadccqdreaelplefpdgttpvtcrvsiydgsadkkvgvgslfdkaiapslpvgslYIEEVHAKLGEelhftvgsqhipfgaspqvTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
mlqsqkprrrcegtamGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELplefpdgttpVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
MLQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQvtftcivvffivLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
*************TAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLA******
********************LDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSL****STLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQY*****************GTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLA*T****
**********CEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
*****KPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQT****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooo
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MLQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVTFTCIVVFFIVLQSDFCCFELILLAHTYLNLFNSFLQFISYPILHINVNINLAQTHKTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query302 2.2.26 [Sep-21-2011]
Q9SD33410 UPF0183 protein At3g51130 yes no 0.801 0.590 0.822 1e-120
Q9VSH9 438 UPF0183 protein CG7083 OS yes no 0.546 0.376 0.371 8e-23
P34692 422 UPF0183 protein T01G9.2 O yes no 0.529 0.379 0.325 3e-18
O08654 422 UPF0183 protein C16orf70 yes no 0.552 0.395 0.300 4e-17
Q9BSU1 422 UPF0183 protein C16orf70 yes no 0.552 0.395 0.300 1e-16
Q922R1 422 UPF0183 protein C16orf70 yes no 0.552 0.395 0.295 9e-16
>sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2 Back     alignment and function desciption
 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 217/242 (89%)

Query: 5   QKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEP 64
           Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+DE+P
Sbjct: 14  QRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDP 73

Query: 65  LKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYAL 124
           LKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYAL
Sbjct: 74  LKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYAL 133

Query: 125 FGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVS 184
           FGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVS
Sbjct: 134 FGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVS 193

Query: 185 IYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVT 244
           IYD S+DKKVGVG L D+A  P LP GSLY+EEVH K G+EL+FTVG QH+PFGASPQ  
Sbjct: 194 IYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASPQDV 253

Query: 245 FT 246
           +T
Sbjct: 254 WT 255





Arabidopsis thaliana (taxid: 3702)
>sp|Q9VSH9|U183_DROME UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1 Back     alignment and function description
>sp|P34692|U183_CAEEL UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3 Back     alignment and function description
>sp|O08654|CP070_RAT UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1 Back     alignment and function description
>sp|Q9BSU1|CP070_HUMAN UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1 Back     alignment and function description
>sp|Q922R1|CP070_MOUSE UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
224134150401 predicted protein [Populus trichocarpa] 0.807 0.608 0.860 1e-121
356496677400 PREDICTED: UPF0183 protein At3g51130-lik 0.801 0.605 0.847 1e-121
357483667 404 hypothetical protein MTR_5g021520 [Medic 0.801 0.599 0.847 1e-121
359476646402 PREDICTED: UPF0183 protein At3g51130-lik 0.801 0.601 0.863 1e-121
224094913398 predicted protein [Populus trichocarpa] 0.798 0.605 0.863 1e-121
356538264 403 PREDICTED: UPF0183 protein At3g51130-lik 0.801 0.600 0.842 1e-120
388499418 404 unknown [Medicago truncatula] 0.801 0.599 0.838 1e-120
21554302 409 Putative UPF0183 protein [Arabidopsis th 0.801 0.591 0.826 1e-119
449434186398 PREDICTED: UPF0183 protein At3g51130-lik 0.801 0.608 0.834 1e-118
449491389398 PREDICTED: UPF0183 protein At3g51130-lik 0.801 0.608 0.834 1e-118
>gi|224134150|ref|XP_002327768.1| predicted protein [Populus trichocarpa] gi|222836853|gb|EEE75246.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 223/244 (91%)

Query: 3   QSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDE 62
           QSQ+PRRRCEGTAMG I+LDLRPG GIGPFSLGMPICEAFA IEQQP+IYDVVHVKYFDE
Sbjct: 10  QSQRPRRRCEGTAMGVIILDLRPGNGIGPFSLGMPICEAFAQIEQQPSIYDVVHVKYFDE 69

Query: 63  EPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVY 122
           EPLKLDI+ISFPDHGFHLRFDPWSQRLRLIEIFD+KRLQMRYATSLIGG S LATFVAVY
Sbjct: 70  EPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMRYATSLIGGPSNLATFVAVY 129

Query: 123 ALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCR 182
           ALFGPTFPG+YDK+R VY LFYPGLSFAFPIP+QY DC   REAELPLEFPDGTTPVTCR
Sbjct: 130 ALFGPTFPGIYDKDRGVYTLFYPGLSFAFPIPSQYTDCFHGREAELPLEFPDGTTPVTCR 189

Query: 183 VSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQ 242
           VSIYDGSADKKVGVGSL  KA AP L  G+LY+EEVH KLGEEL+F+VG QHIPFGASPQ
Sbjct: 190 VSIYDGSADKKVGVGSLMHKASAPPLLPGNLYMEEVHVKLGEELYFSVGGQHIPFGASPQ 249

Query: 243 VTFT 246
             +T
Sbjct: 250 DVWT 253




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496677|ref|XP_003517192.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] Back     alignment and taxonomy information
>gi|357483667|ref|XP_003612120.1| hypothetical protein MTR_5g021520 [Medicago truncatula] gi|355513455|gb|AES95078.1| hypothetical protein MTR_5g021520 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359476646|ref|XP_003631875.1| PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224094913|ref|XP_002310289.1| predicted protein [Populus trichocarpa] gi|222853192|gb|EEE90739.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538264|ref|XP_003537624.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] Back     alignment and taxonomy information
>gi|388499418|gb|AFK37775.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|21554302|gb|AAM63377.1| Putative UPF0183 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434186|ref|XP_004134877.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491389|ref|XP_004158881.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2080873410 AT3G51130 [Arabidopsis thalian 0.798 0.587 0.825 5.3e-111
DICTYBASE|DDB_G0271880 519 DDB_G0271880 "UPF0183 family p 0.549 0.319 0.449 3.1e-35
FB|FBgn0035877 438 CG7083 [Drosophila melanogaste 0.655 0.452 0.328 5e-23
WB|WBGene00011344 422 T01G9.2a [Caenorhabditis elega 0.516 0.369 0.335 1.3e-18
UNIPROTKB|P34692 422 T01G9.2 "UPF0183 protein T01G9 0.516 0.369 0.335 1.3e-18
RGD|621098 422 RGD621098 "similar to RIKEN cD 0.582 0.417 0.309 1e-17
UNIPROTKB|Q9BSU1 422 C16orf70 "UPF0183 protein C16o 0.582 0.417 0.309 2.8e-17
MGI|MGI:2443049 422 D230025D16Rik "RIKEN cDNA D230 0.589 0.421 0.302 1.3e-15
ASPGD|ASPL0000038147 516 AN10404 [Emericella nidulans ( 0.427 0.25 0.310 1.3e-12
UNIPROTKB|G4MWK3 526 MGG_01174 "Uncharacterized pro 0.596 0.342 0.267 4.9e-10
TAIR|locus:2080873 AT3G51130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 199/241 (82%), Positives = 216/241 (89%)

Query:     2 LQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFD 61
             L  Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+D
Sbjct:    11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYD 70

Query:    62 EEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 121
             E+PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct:    71 EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130

Query:   122 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 181
             YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct:   131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190

Query:   182 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 241
             RVSIYD S+DKKVGVG L D+A  P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct:   191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250

Query:   242 Q 242
             Q
Sbjct:   251 Q 251




GO:0005739 "mitochondrion" evidence=ISM
GO:0006914 "autophagy" evidence=RCA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
DICTYBASE|DDB_G0271880 DDB_G0271880 "UPF0183 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0035877 CG7083 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00011344 T01G9.2a [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34692 T01G9.2 "UPF0183 protein T01G9.2" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|621098 RGD621098 "similar to RIKEN cDNA D230025D16Rik" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSU1 C16orf70 "UPF0183 protein C16orf70" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443049 D230025D16Rik "RIKEN cDNA D230025D16 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000038147 AN10404 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWK3 MGG_01174 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SD33U183_ARATHNo assigned EC number0.82230.80130.5902yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00570121
hypothetical protein (401 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
pfam03676 395 pfam03676, UPF0183, Uncharacterized protein family 5e-94
>gnl|CDD|217668 pfam03676, UPF0183, Uncharacterized protein family (UPF0183) Back     alignment and domain information
 Score =  283 bits (725), Expect = 5e-94
 Identities = 101/241 (41%), Positives = 130/241 (53%), Gaps = 35/241 (14%)

Query: 26  GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPW 85
           G G   F LGMPI +A A I+QQP I   V VKY D++PL +D++I+ P  G  LRFDP 
Sbjct: 1   GNGQWEFVLGMPISQAIAIIQQQPRIIKNVQVKYSDKDPLSMDLVINLPQDGIRLRFDPV 60

Query: 86  SQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYP 145
           SQRL+LIE+FD+KR++++YA       S L T   VY  FG T PGVYD    +Y LF+ 
Sbjct: 61  SQRLKLIEVFDLKRVKLKYAGVYFNSPSVLPTIEQVYHSFGATHPGVYDASHQLYALFFR 120

Query: 146 GLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIA 205
           GLSF+FPI ++Y            L+FPDG TPV  R+SIYDGS            +A  
Sbjct: 121 GLSFSFPIDSKYTPGFGHGLGS--LKFPDGATPVVSRMSIYDGSN---------LAEAKV 169

Query: 206 PSLPV----GSLYIEEVHA------KLGEELHFTVG--------------SQHIPFGASP 241
           P LP+    G+LY+E V         LG +L                   ++HI FG S 
Sbjct: 170 PPLPLSCYLGNLYLESVEVLRDSGGTLGLKLQLVTEGGPGVALEPRVRTFTRHIYFGDSC 229

Query: 242 Q 242
           Q
Sbjct: 230 Q 230


This family of proteins includes Lin-10 from C. elegans. Length = 395

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 302
PF03676 394 UPF0183: Uncharacterised protein family (UPF0183); 100.0
KOG2819 413 consensus Uncharacterized conserved protein [Funct 100.0
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=1e-70  Score=535.84  Aligned_cols=220  Identities=40%  Similarity=0.771  Sum_probs=209.9

Q ss_pred             CCcccccccCCcHHHHHHHHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEecCCCceEEEEEEeeCCcceEEEc
Q 022129           26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA  105 (302)
Q Consensus        26 G~gLG~F~LG~sL~~vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~FD~~sQRLrlIEV~D~skv~L~Y~  105 (302)
                      |.++|+|+|||||||||++||+++++||+|||+||+++|+++||+|+||++||||+|||++||||+|||+|+++++|+|+
T Consensus         1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~   80 (394)
T PF03676_consen    1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK   80 (394)
T ss_pred             CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcceeeeeccccCCCCCCCccCCCcEEEEeeCceEEEeeCCccCccccccccCCccccCCCCCCceeeEEEE
Q 022129          106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI  185 (302)
Q Consensus       106 g~~~ssp~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYPGvaF~Fpi~s~~~~~~~~g~~~lsl~fpdg~tPvvsri~I  185 (302)
                      ++.|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+  |++|++|++|+|+||+|
T Consensus        81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI  158 (394)
T PF03676_consen   81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI  158 (394)
T ss_pred             cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999988865  99999999999999999


Q ss_pred             eeCCCCCccccCcccccCCCCCCC----CCCeeEEEEEEEe------CCeEEEEecc--------------EEEEcCCCH
Q 022129          186 YDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKL------GEELHFTVGS--------------QHIPFGASP  241 (302)
Q Consensus       186 y~gs~~~~~~~g~~~~~a~~P~LP----~g~~y~e~v~v~~------~~~l~f~~~~--------------~~I~FGdS~  241 (302)
                      |+|+         +|++|++|++|    +|++|+|+++|++      +.+++|..+.              +.|+|||||
T Consensus       159 f~G~---------s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~  229 (394)
T PF03676_consen  159 FSGS---------SWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP  229 (394)
T ss_pred             EcCC---------chhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence            9998         69999999888    4999999999954      4788887775              899999999


Q ss_pred             HHHHhhcCCceeecc
Q 022129          242 QVTFTCIVVFFIVLQ  256 (302)
Q Consensus       242 QDVls~LG~p~~v~~  256 (302)
                      |||+++||+|.+|..
T Consensus       230 qdv~~~lG~P~~~~~  244 (394)
T PF03676_consen  230 QDVLSELGPPDRIFY  244 (394)
T ss_pred             HHHHHhhCCccceee
Confidence            999999999999864



>KOG2819 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00