Citrus Sinensis ID: 022144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSLVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQVQAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINKAD
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mastkkdvdrikgpwspeeDEALQRLVQNygprnwslisksipgrsgkscrlrwcnqlspqvehrpftpeedETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLkrkcssmsdesqvdainplplkransvgpsnnisglclnpgspsgsdssdsslpgvaqspvchplfrtgslvpvetsssttdpptslslslpgsescevsnhgpgsengsnlvlnpnqvastqpLQVQAQAQnqgefgyekqffsPEFLAVMQEMIRKEVRNYMsgvernglclpaEAIRNAVVKRIGINKAD
Flexible Loop (DISEMBL)
mastkkdvdrikgpwspeedEALQRLVQNygprnwslisksipgrsgksCRLRWCNQlspqvehrpftpeEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSLVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQVQAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVErnglclpaeairnavvkriginkad
Low Complexity Region (SEG)
MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLCLNpgspsgsdssdssLPGVAQSPVCHPLFRTGSLVPVEtsssttdpptslslslpgsesCEVSNHGPGSENGSNLVLNPNQVASTqplqvqaqaqnqGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINKAD
Disordered region (IsUnstruct)
*************************LVQNYGPRNWSLISKSIPG*SGKSCRLRWCNQLS*************ETILRAHARFGNKWATIARLLSGRTDNAIKNHWN*******************************************************************LF**********************************************************************FGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGI****
Disordered Region (DISOPRED)
**************WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTL***************************************************************************************************************************************************FLAVMQEMIRKEVRN********GLCLPAEAIRNAVVKRIGINKA*
Disordered Region (DISEMBL)
***********KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTL************VDAINPLPLKRANSVGPSNNISGLCLNP****************AQSPVCHPLFRTGSLVP**********************************NGSNLVLNPNQVASTQPLQVQAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINKAD
Disordered Region (DISPRO)
*********RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS***************************************************************************************************************************************QFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINKA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSLVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQVQAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINKAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	yes	no	0.890	0.881	0.577	1e-74
Q08759	624	Transcriptional activator	N/A	no	0.480	0.232	0.459	5e-34
P06876	636	Transcriptional activator	yes	no	0.5	0.237	0.471	6e-34
P01103	641	Transcriptional activator	yes	no	0.493	0.232	0.465	7e-34
P10242	640	Transcriptional activator	no	no	0.341	0.160	0.601	1e-33
P51960	751	Myb-related protein A OS=	no	no	0.341	0.137	0.601	1e-33
P46200	640	Transcriptional activator	no	no	0.341	0.160	0.601	1e-33
P10243	752	Myb-related protein A OS=	no	no	0.341	0.136	0.601	1e-33
P52550	757	Myb-related protein A OS=	no	no	0.341	0.136	0.592	4e-33
P52551	743	Myb-related protein B OS=	N/A	no	0.354	0.144	0.560	1e-32

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  280 bits (716), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/277 (57%), Positives = 196/277 (70%), Gaps = 8/277 (2%)

Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           DRIKGPWSPEEDE L+RLV  YGPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHRPF+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPL 128
            EEDETI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC          + +  
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 129 PLKRANSVGPSNNISGLCLNPGSPSGSDSSDSS-LPGVAQSPVCHPLFRTGSLV---PVE 184
           P+KR+ S G    ++GL ++PGSP+GSD SDSS +P +    +  P+ R G++V   P+E
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query: 185 TSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLV---LNPNQVASTQPLQVQAQAQ 241
           TSSS+ DPPTSLSLSLPG++  E SN    S N +N      N N   S  P     +  
Sbjct: 183 TSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGA 242

Query: 242 NQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVER 278
            + E G        EF+AV+QEMI+ EVR+YM+ ++R
Sbjct: 243 IE-EMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQR 278

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LV  YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 88  IKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 147

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK------CSSMSDESQVDA 124
           ED TI  AH R GN+WA IA+LL GRTDNAIKNHWNST++RK        + S  +Q   
Sbjct: 148 EDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQEGYLQNSSKTNQHTI 207

Query: 125 INPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLP 163
           +   P         SN++        S   S +S SS P
Sbjct: 208 VTNFP--------KSNHLMTFTHTRASAEHSQASTSSFP 238

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 98/157 (62%), Gaps = 6/157 (3%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 130
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK        +    +  P+
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPV 210

Query: 131 KRANSVGPSNNISGLCL----NPGSPSGSDSSDSSLP 163
             A S   +N++ G       +  SPSG  S +S  P
Sbjct: 211 --ATSFQKNNHLMGFGHASPPSQLSPSGQSSVNSEYP 245

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 12/161 (7%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 130
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK   +  E  +   +   L
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK---VEQEGYLQESSKAGL 207

Query: 131 KRANS-VGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPV 170
             A +    S+++     NP  P+G       LPG  Q+P+
Sbjct: 208 PSATTGFQKSSHLMAFAHNP--PAG------PLPGAGQAPL 240

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 78/103 (75%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 77/103 (74%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK 
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 78/103 (75%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 77/103 (74%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK 
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 76/103 (73%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T  
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEA 145

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK 
Sbjct: 146 EDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 79/107 (73%)

Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           D +KGPW+ EEDE +  LV+ YG ++W+LI+K + GR GK CR RW N L+P+V+   +T
Sbjct: 80  DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWT 139

Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115
            EED  I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK  +
Sbjct: 140 EEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVET 186

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
340396210	302	putative R2R3-MYB transcription factor [	1.0	1.0	0.993	1e-174
410519446	313	R2R3-MYB transcription factor [Jatropha	0.980	0.945	0.699	1e-116
225458725	313	PREDICTED: transcription factor MYB44-li	0.980	0.945	0.683	1e-111
225438837	312	PREDICTED: transcription factor MYB44 [V	0.980	0.948	0.657	1e-108
63054325	312	sucrose responsive element binding prote	0.980	0.948	0.650	1e-107
224136836	311	predicted protein [Populus trichocarpa]	0.973	0.945	0.667	1e-107
147857322	309	hypothetical protein VITISV_028904 [Viti	0.956	0.935	0.669	1e-105
302142263	261	unnamed protein product [Vitis vinifera]	0.814	0.942	0.643	1e-99
147835781	301	hypothetical protein VITISV_014739 [Viti	0.950	0.953	0.602	1e-96
302398949	319	MYB domain class transcription factor [M	0.990	0.937	0.639	1e-95

>gi|340396210|gb|AEK32395.1| putative R2R3-MYB transcription factor [Citrus sinensis]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/302 (99%), Positives = 302/302 (100%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES
Sbjct: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120

Query: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL 180
           QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL
Sbjct: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL 180

Query: 181 VPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQVQAQA 240
           VPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVAST+PLQVQAQA
Sbjct: 181 VPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTRPLQVQAQA 240

Query: 241 QNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINK 300
           QNQGEFGYEKQFF+PEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINK
Sbjct: 241 QNQGEFGYEKQFFNPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRIGINK 300

Query: 301 AD 302
           AD
Sbjct: 301 AD 302

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410519446|gb|AFV73403.1| R2R3-MYB transcription factor [Jatropha curcas]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/319 (69%), Positives = 251/319 (78%), Gaps = 23/319 (7%)

Query: 1   MAST-KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
           MAS  +KDV   K PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS
Sbjct: 1   MASAARKDVIGSKVPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 60

Query: 60  PQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDE 119
           P+VEHRPFT +ED+TI+RAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCSS+SD+
Sbjct: 61  PEVEHRPFTADEDDTIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSLSDD 120

Query: 120 SQVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGS 179
              D     PLKR+ SVG   NISGL LNP SPSGSD SDSSLPG+A SPV  PL RTGS
Sbjct: 121 LNDDVQQ--PLKRSASVGAGTNISGLHLNPSSPSGSDVSDSSLPGMASSPVYRPLARTGS 178

Query: 180 LVP----VETSSSTTDPPTSLSLSLPGSESCEVS------------NHGPGSENGSNLVL 223
           LVP    ++ +SSTTDPPTSLSLSLPGS+SCE S            NHG    + +++V 
Sbjct: 179 LVPPGPSIDATSSTTDPPTSLSLSLPGSDSCEASNQVSGSGSGSGFNHG---LSPTHVVQ 235

Query: 224 NPNQVASTQPLQVQAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCL 283
            P    +T P+Q Q  A  Q   G+EKQFF+PEFLAVMQEMIRKEVRNYMSG+E+NG+C 
Sbjct: 236 TPAMPPATLPVQ-QVPAVQQNCVGFEKQFFNPEFLAVMQEMIRKEVRNYMSGIEQNGMCF 294

Query: 284 PAEAIRNAVVKRIGINKAD 302
             EAIRNAVVKRIGI++ +
Sbjct: 295 QTEAIRNAVVKRIGISRIE 313

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458725|ref|XP_002285015.1| PREDICTED: transcription factor MYB44-like [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/319 (68%), Positives = 247/319 (77%), Gaps = 23/319 (7%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAS+KKD+DRIKGPWSPEEDEALQRLVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MASSKKDLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHR FTPEED TI+RAHARFGNKWATIARLL GRTDNAIKNHWNSTLKRKCSS++++ 
Sbjct: 61  QVEHRAFTPEEDATIIRAHARFGNKWATIARLLVGRTDNAIKNHWNSTLKRKCSSITEDM 120

Query: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL 180
             D     PLKR+ SVG    +SG  L+P SPSGS+ SDSS PG+A S V  P+ RTG +
Sbjct: 121 IADGHAQPPLKRSASVGAGTTVSGHNLSPSSPSGSEFSDSSAPGMASSLVYRPVPRTGPI 180

Query: 181 V----PVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGS--NLVLNPNQVASTQPL 234
           V     +E +SST DPPTSLSLSLPGS+SCEVSNH  GS++    N +L   Q  +  P+
Sbjct: 181 VLPTQKIEAASSTNDPPTSLSLSLPGSDSCEVSNHLSGSDHVKIQNQIL---QSPAIPPV 237

Query: 235 QVQAQAQNQG--------EFGY---EKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCL 283
           Q+Q   QN G        E G    EK FF+PEFLAVMQEMIRKEVRNYMSG+E+NGLCL
Sbjct: 238 QLQ---QNPGSPRNIQNCELGLGMSEKPFFTPEFLAVMQEMIRKEVRNYMSGMEQNGLCL 294

Query: 284 PAEAIRNAVVKRIGINKAD 302
             EAI NAV+KRIGI K +
Sbjct: 295 QTEAIWNAVMKRIGIGKIE 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438837|ref|XP_002283347.1| PREDICTED: transcription factor MYB44 [Vitis vinifera]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/318 (65%), Positives = 241/318 (75%), Gaps = 22/318 (6%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA+T+KDVDRIKGPWSPEED+ALQ+LVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDVDRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHR FT EED+TI+RAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS+++++ 
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSAITEDG 120

Query: 121 QVDA-INPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGS 179
                  P PLKR+ S G +  +SGL L+P SP GSD SDSSLP V+ S V  P+ RTG 
Sbjct: 121 SFGGDYPPHPLKRSVSAGAAAPVSGLYLSPSSPCGSDVSDSSLPVVSSSHVYRPVARTGG 180

Query: 180 LVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVAST-------- 231
           ++P ET+SS+ DPPTSLSLSLPG +SCEVSN  P  E       NP Q+  T        
Sbjct: 181 IIPPETTSSSNDPPTSLSLSLPGVDSCEVSNRAP--EPNHAPPANPIQMIPTMAPLQQIP 238

Query: 232 -----QPLQVQAQAQNQGEFGYEKQF--FSPEFLAVMQEMIRKEVRNYMSGVERNGLCLP 284
                QP  V A   +QG    EK F  FS E LAVMQEMIRKEVRNYM+G+E+NG+CL 
Sbjct: 239 MHQHNQPATVPATVLSQG----EKPFIPFSAELLAVMQEMIRKEVRNYMAGLEQNGVCLQ 294

Query: 285 AEAIRNAVVKRIGINKAD 302
           A+ IRNA VKRIGI+K +
Sbjct: 295 ADGIRNAAVKRIGISKIE 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|63054325|gb|AAY28930.1| sucrose responsive element binding protein [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 239/318 (75%), Gaps = 22/318 (6%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA+T+KD DRIKGPWSPEED+ALQ+LVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDADRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHR FT EED+TI+RAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS+++++ 
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSAITEDG 120

Query: 121 QVDA-INPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGS 179
                  P PLKR+ S G +  +SGL L+P SP GSD SDSSLP V+ S V  P+ RTG 
Sbjct: 121 SFGGDYPPHPLKRSVSAGAAAPVSGLYLSPSSPCGSDVSDSSLPVVSSSHVYRPVARTGG 180

Query: 180 LVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVAST-------- 231
           ++P ET+SS+ DPPTSLSLSLPG +SCEVSN  P  E       NP Q+  T        
Sbjct: 181 IIPPETTSSSNDPPTSLSLSLPGVDSCEVSNRAP--EPNHAPPANPIQMIPTMAPLQQIP 238

Query: 232 -----QPLQVQAQAQNQGEFGYEKQF--FSPEFLAVMQEMIRKEVRNYMSGVERNGLCLP 284
                QP  V A   +QG    EK F  FS E LAVMQEMIRKEVRNY +G+E+NG+CL 
Sbjct: 239 MHQHNQPATVPATVLSQG----EKPFIPFSAELLAVMQEMIRKEVRNYTAGLEQNGVCLQ 294

Query: 285 AEAIRNAVVKRIGINKAD 302
           A+ IRNA VKRIGI+K +
Sbjct: 295 ADGIRNAAVKRIGISKIE 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136836|ref|XP_002326957.1| predicted protein [Populus trichocarpa] gi|222835272|gb|EEE73707.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/319 (66%), Positives = 239/319 (74%), Gaps = 25/319 (7%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAS++KDVDRIKGPWSPEEDEALQRLVQ YGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MASSRKDVDRIKGPWSPEEDEALQRLVQTYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           +VEHRPF+ EED+TI+RAHAR GNKWATIARLL+GRTDNAIKNHWNSTLKRKCSSM D+ 
Sbjct: 61  EVEHRPFSAEEDDTIIRAHARIGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMFDDL 120

Query: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL 180
             DA    PLKR+ S+G     SGL LNP SPSGSD SDSS+PGV  SPV  P  +T SL
Sbjct: 121 NDDA-QQQPLKRSASLGAG---SGLHLNPSSPSGSDLSDSSIPGVNSSPVFRPPVKTASL 176

Query: 181 VP----VETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQV 236
           VP    ++ SS T DPPTSLSLSLPGS +C+         +  + V+NP  +  T     
Sbjct: 177 VPPSLSIDVSSPTVDPPTSLSLSLPGSITCQAPGS---GSSSGSHVVNPTPMVQTPAAPP 233

Query: 237 QA-------------QAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCL 283
           QA             Q +N G    E QFFS EFLAVMQEMIRKEVRNYMSG+E+NGLCL
Sbjct: 234 QAAVAVQQQEQVSFLQQKNPGS-RLENQFFSAEFLAVMQEMIRKEVRNYMSGIEQNGLCL 292

Query: 284 PAEAIRNAVVKRIGINKAD 302
             EAIRNAVVKRIGI++ +
Sbjct: 293 GTEAIRNAVVKRIGISRIE 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857322|emb|CAN81361.1| hypothetical protein VITISV_028904 [Vitis vinifera]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/312 (66%), Positives = 236/312 (75%), Gaps = 23/312 (7%)

Query: 8   VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPF 67
           + RIKGPWSPEEDEALQRLVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR F
Sbjct: 4   IRRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 63

Query: 68  TPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINP 127
           TPEED TI+RAHARFGNKWATIARLL GRTDNAIKNHWNSTLKRKCSS++++   D    
Sbjct: 64  TPEEDATIIRAHARFGNKWATIARLLVGRTDNAIKNHWNSTLKRKCSSITEDMIADGHAQ 123

Query: 128 LPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSLV----PV 183
            PLKR+ SVG    +SG  L+P S SGS+ SDSS PG+  S V  P+ RTG +V     +
Sbjct: 124 PPLKRSASVGAGTTVSGHNLSPSSXSGSEFSDSSAPGMXSSLVYRPVPRTGPIVLPTQKI 183

Query: 184 ETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGS--NLVLNPNQVASTQPLQVQAQAQ 241
           E  SST DPPTSLSLSLPGS+SCEVSNH  GS++    N +L   Q  +  P+Q+Q   Q
Sbjct: 184 EAXSSTNDPPTSLSLSLPGSDSCEVSNHLSGSDHVKIQNQIL---QSPAIPPVQLQ---Q 237

Query: 242 NQG--------EFGY---EKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRN 290
           N G        E G    EK FF+PEFLAVMQEMIRKEVRNYMSG+E+NGLCL  EAI N
Sbjct: 238 NPGSPRNIQNCELGLGMSEKPFFTPEFLAVMQEMIRKEVRNYMSGMEQNGLCLQTEAIWN 297

Query: 291 AVVKRIGINKAD 302
           AV+KRIGI K +
Sbjct: 298 AVMKRIGIGKIE 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142263|emb|CBI19466.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 216/306 (70%), Gaps = 60/306 (19%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAS+KKD+DRIKGPWSPEEDEALQRLVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 12  MASSKKDLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 71

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHR FTPEED TI+RAHARFGNKWATIARLL GRTDNAIKNHWNSTLKRKCS      
Sbjct: 72  QVEHRAFTPEEDATIIRAHARFGNKWATIARLLVGRTDNAIKNHWNSTLKRKCS------ 125

Query: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGSL 180
                                       P SPSGS+ SDSS PG+A S V  P+ RTG +
Sbjct: 126 ----------------------------PSSPSGSEFSDSSAPGMASSLVYRPVPRTGPI 157

Query: 181 V----PVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQV 236
           V     +E +SST DPPTSLSLSLPGS+SCEVSNH  GS++   L L  +          
Sbjct: 158 VLPTQKIEAASSTNDPPTSLSLSLPGSDSCEVSNHLSGSDHNCELGLGMS---------- 207

Query: 237 QAQAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAIRNAVVKRI 296
                       EK FF+PEFLAVMQEMIRKEVRNYMSG+E+NGLCL  EAI NAV+KRI
Sbjct: 208 ------------EKPFFTPEFLAVMQEMIRKEVRNYMSGMEQNGLCLQTEAIWNAVMKRI 255

Query: 297 GINKAD 302
           GI K +
Sbjct: 256 GIGKIE 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835781|emb|CAN75196.1| hypothetical protein VITISV_014739 [Vitis vinifera]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 226/312 (72%), Gaps = 25/312 (8%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA+T+KDVDRIKGPWSPEED+ALQ+LVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDVDRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           QVEHR FT EED+TI+RAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS+++++ 
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSAITEDG 120

Query: 121 QVDA-INPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVAQSPVCHPLFRTGS 179
                  P PLKR+ S G +  +SGL L+P SP GSD SDSSLP V+ S V  P+ RTG 
Sbjct: 121 SFGGDYPPHPLKRSVSAGAAAPVSGLYLSPSSPCGSDVSDSSLPVVSSSHVYRPVARTGG 180

Query: 180 LVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQPLQ---- 235
           ++P ET+SS+ DPPTSLSLSLPG +SCEVSN  P           PN     +P      
Sbjct: 181 IIPPETTSSSNDPPTSLSLSLPGVDSCEVSNRAP----------EPNHAPPGKPYSDDTY 230

Query: 236 ---VQAQAQNQGEFGYEKQFFSP----EFLAVMQEMIRKEVRNYMSGVERNGLCLPAEAI 288
                A +    +   +   +SP    E +  +Q    + +RNYM+G+E+NG+CL A+ I
Sbjct: 231 DGSFAADSDAPTQPASDGAGYSPLPGGETIYPLQ---LQSLRNYMAGLEQNGVCLQADGI 287

Query: 289 RNAVVKRIGINK 300
           RNA VKRIGI+K
Sbjct: 288 RNAAVKRIGISK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398949|gb|ADL36769.1| MYB domain class transcription factor [Malus x domestica]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 239/322 (74%), Gaps = 23/322 (7%)

Query: 1   MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MASTKK VDRIKGPWSPEEDEALQ LV+NYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MASTKKVVDRIKGPWSPEEDEALQNLVKNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 120
           +VEHRPF+PEED+TI+RAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRK SSMS++ 
Sbjct: 61  EVEHRPFSPEEDDTIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKSSSMSEDL 120

Query: 121 QVDAINPLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVA--QSPVCHPLFR-- 176
             D     P KR+ SVG +  ++GL  NPGSPSGSD SDSSLPG     S V  P  R  
Sbjct: 121 SSDVQAHPPHKRSASVG-AVPVTGLYFNPGSPSGSDLSDSSLPGGVSPSSQVFTPFARPL 179

Query: 177 ----TGSLVPVETSSSTTDPPTSLSLSLPGSESCEVSNHGPGSENGSNLVLNPNQVASTQ 232
                   +   TS+   DPPTSLSLSLPGSESC+ S+H   S  G+N ++ P Q+    
Sbjct: 180 PPPIALPPMEAVTSAMAVDPPTSLSLSLPGSESCDGSSHM-ASGFGTNSIVGPAQIVQQA 238

Query: 233 PLQVQA------------QAQNQGEFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERNG 280
           P +V A            Q+    E G+++QFFS EFL +MQEMIRKEVRNYM+G+E+ G
Sbjct: 239 P-EVTAPPRAVGLPPAPRQSNQNSETGHDQQFFSSEFLDMMQEMIRKEVRNYMTGIEQKG 297

Query: 281 LCLPAEAIRNAVVKRIGINKAD 302
           LC+  EAIRNAVVKRIGI++ +
Sbjct: 298 LCMHTEAIRNAVVKRIGISRIE 319

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.973	0.963	0.448	3.1e-60
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.367	0.346	0.864	3.3e-59
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.370	0.362	0.866	2e-57
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.350	0.352	0.849	4.2e-55
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.413	0.313	0.590	1.8e-39
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.440	0.362	0.542	4.3e-38
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.344	0.264	0.673	4.9e-37
ZFIN|ZDB-GENE-991110-14	641	cmyb "transcription factor cmy	0.413	0.195	0.52	5.2e-33
UNIPROTKB|E9PIW4	385	MYB "Transcriptional activator	0.337	0.264	0.607	1.8e-32
UNIPROTKB|E9PJ96	364	MYB "Transcriptional activator	0.337	0.280	0.607	1.8e-32

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 136/303 (44%), Positives = 175/303 (57%)

Query:     9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
             DRIKGPWSPEEDE L+RLV  YGPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHRPF+
Sbjct:     3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query:    69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPL 128
              EEDETI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC          + +  
Sbjct:    63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query:   129 PLKRANSVGPSNNISGLCLNXXX-XXXXXXXXXXLPGVAQSPVCHPLFRTGSLV---PVE 184
             P+KR+ S G    ++GL ++              +P +    +  P+ R G++V   P+E
Sbjct:   123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query:   185 XXXXXXXXXXXXXXXXXXXXXCEVSNHGPGSENGSNLVLNPNQVASTXXXXXXXXXXXXG 244
                                   E SN    S N +N   + +   +T             
Sbjct:   183 TSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGA 242

Query:   245 --EFGYEKQFFSPEFLAVMQEMIRKEVRNYMSGVERN-GLCLPAEAIRNAVV--KRIGIN 299
               E G        EF+AV+QEMI+ EVR+YM+ ++RN G       I N ++   +IG+ 
Sbjct:   243 IEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQRNNGGGFVGGFIDNGMIPMSQIGVG 302

Query:   300 KAD 302
             + +
Sbjct:   303 RIE 305

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 96/111 (86%), Positives = 107/111 (96%)

Query:     4 TKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63
             T+K+++RIKGPWSPEED+ LQRLVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VE
Sbjct:     5 TRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVE 64

Query:    64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114
             HR F+ EEDETI+RAHARFGNKWATI+RLL+GRTDNAIKNHWNSTLKRKCS
Sbjct:    65 HRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCS 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 97/112 (86%), Positives = 106/112 (94%)

Query:     3 STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
             ST+K++DRIKGPWSPEED+ LQ LVQ +GPRNWSLISKSIPGRSGKSCRLRWCNQLSP+V
Sbjct:     4 STRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEV 63

Query:    63 EHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114
             EHR FT EED+TI+ AHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS
Sbjct:    64 EHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 90/106 (84%), Positives = 100/106 (94%)

Query:     9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
             DR+KGPWS EEDE L+R+V+ YGPRNWS ISKSIPGRSGKSCRLRWCNQLSP+VEHRPF+
Sbjct:     3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query:    69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114
             PEEDETI+ A A+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKCS
Sbjct:    63 PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCS 108

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 75/127 (59%), Positives = 96/127 (75%)

Query:    10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTP 69
             ++KGPWS EED  L +LV+  GPRNWSLI++ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct:    54 KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query:    70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ--VDAINP 127
             EED  I+ AHA  GNKWA IA+LL+GRTDNAIKNHWNSTL+RK + + +  Q   +++  
Sbjct:   114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTT 173

Query:   128 LPLKRAN 134
               +K  N
Sbjct:   174 ASVKNEN 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/140 (54%), Positives = 100/140 (71%)

Query:    10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTP 69
             ++KGPW PE+DEAL RLV+  GPRNW+LIS+ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct:    48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query:    70 EEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS-------MSDESQV 122
             EE+  I+ A A  GNKW+ IA+LL GRTDNAIKNHWNS L+RK +        MS+   V
Sbjct:   108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQWKIPLLMSNTEIV 167

Query:   123 DAINPLPLKRANSVGPSNNI 142
               + P  ++R ++  P  ++
Sbjct:   168 YQLYPSMVRRISNASPKEHL 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 70/104 (67%), Positives = 82/104 (78%)

Query:     9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
             DR+KGPWS EED+ L  LV+  G RNWS I++SIPGRSGKSCRLRWCNQL+P +    FT
Sbjct:    52 DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFT 111

Query:    69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
               ED+ I+ AHA  GNKWA IA+LL GRTDNAIKNHWNS L+R+
Sbjct:   112 EVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-991110-14 cmyb "transcription factor cmyb" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/125 (52%), Positives = 86/125 (68%)

Query:    11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
             IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct:    91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query:    71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 130
             ED+ I +AH + GN+WA IA+LL GRTDNAIKNHWNST++RK            ++P PL
Sbjct:   151 EDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQHAAKVSPTPL 210

Query:   131 KRANS 135
               + S
Sbjct:   211 NNSYS 215

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009790 "embryo development" evidence=IGI;IMP

GO:0001654 "eye development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0035701 "hematopoietic stem cell migration" evidence=IGI

UNIPROTKB|E9PIW4 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 62/102 (60%), Positives = 78/102 (76%)

Query:    11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
             IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct:    91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query:    71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
             ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PJ96 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 62/102 (60%), Positives = 78/102 (76%)

Query:    11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
             IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct:    91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query:    71 EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
             ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FDW1	MYB44_ARATH	No assigned EC number	0.5776	0.8907	0.8819	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014887001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-26
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-24
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	9e-22
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-19
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-16
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-15
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	3e-06
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	6e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  102 bits (256), Expect = 6e-26
 Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 12  KGPWSPEEDEALQRLVQNYGPRNW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           +GPW+ EEDE L   ++  G   W SL  ++   R GKSCRLRW N L P V+    T +
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 130
           E++ ILR H   GN+W+ IA  + GRTDN IKN+WN+ L++K      + Q       PL
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHK----PL 140

Query: 131 KRANSVGPSNNISGLCLNPGSP-SGSDSSDSSLPG 164
              N   P   +SG    P  P S S + D+++ G
Sbjct: 141 DANNIHKPEEEVSGGQKYPIEPISSSHTDDTTVNG 175

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  101 bits (252), Expect = 4e-24
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           KG WSPEEDE L R +  YG   WS + K     R GKSCRLRW N L P ++   F+ +
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
           E+  I+  HA  GN+W+ IA  L GRTDN IKN WNS LK+K
Sbjct: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 94.5 bits (235), Expect = 9e-22
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 6   KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 65
               R  G W   EDE L+ LV+  GP NWS ++  +   +GK    RW N L+PQ++ +
Sbjct: 14  MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKK 73

Query: 66  PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTL----KRKCSSMSDESQ 121
            ++ EEDE ++      G +W+TIA     RT       + +TL        S +   ++
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNE 133

Query: 122 VDAINPL 128
            D I+P 
Sbjct: 134 FDKIDPF 140

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 77.9 bits (193), Expect = 6e-19
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL 58
          +GPW+PEEDE L   V+ +G  NWS I+K +PGR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 15 WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDE 73
          W+ EEDE L +LV+ YG  +W  I++ + GR+  +CR RW  +L P+    P+T EED+
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
          KG W+ EEDE L  LV+ YG  NW  I+K +PGR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 23/43 (53%), Positives = 28/43 (65%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCN 56
          PW+ EEDE L   V+ YG  NW  I+K +PGR+ K CR RW N
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.2 bits (165), Expect = 7e-15
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 66  PFTPEEDETILRAHARFGNK-WATIARLLSGRTDNAIKNHWNSTL 109
           P+TPEEDE ++ A  + GN  W+ IA+ L GRTDN  KN WN+ L
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 65  RPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR 111
             +T EEDE ++    ++G N W  IA+ L GRT    +  W + LK 
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 66  PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTL 109
           P+T EEDE +L A  ++G N W  IA+ L GRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 67  FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS 114
           +T EEDE +L+   ++GN W  IA  L GRT +A ++ W   L+ K S
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLI---SKSIPGRSGKSCRLRWCN 56
           W+ EEDEAL   V+ YG  NW+ I      +  R+    + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 65  RPFTPEEDETILRAHARFGN-KWATI---ARLLSGRTDNAIKNHW 105
           R +T EEDE ++    ++G   WA I      ++ RT   +K+ W
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKW 45

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.75
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.71
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.66
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.59
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.51
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.42
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.37
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.36
PLN03212	249	Transcription repressor MYB5; Provisional	99.25
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.23
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.15
PLN03091	459	hypothetical protein; Provisional	99.13
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.12
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.07
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.01
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.97
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.22
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.04
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.83
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.76
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.71
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.63
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.62
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.39
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.21
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.11
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.08
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.04
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.89
PRK13923	170	putative spore coat protein regulator protein YlbO	96.86
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.7
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.55
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.44
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.2
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.16
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.89
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.4
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.31
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.93
PRK13923	170	putative spore coat protein regulator protein YlbO	94.41
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.35
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.68
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.54
KOG1194	534	consensus Predicted DNA-binding protein, contains	91.25
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	91.1
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.25
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.02
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	87.44
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.8
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	84.8
KOG4167	907	consensus Predicted DNA-binding protein, contains	83.48
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	82.09

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.7e-35  Score=270.61  Aligned_cols=111  Identities=44%  Similarity=0.833  Sum_probs=106.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCc
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK   85 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gnk   85 (302)
                      ++.++||+||+|||++|+++|++||+++|..|++.++ +|++++||+||+|||+|+++++.||+|||++|+++|+.|||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            3446789999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHhhhhccCCC
Q 022144           86 WATIARLLSGRTDNAIKNHWNSTLKRKCSSMS  117 (302)
Q Consensus        86 W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~  117 (302)
                      |+.||++|||||+++|||||+..+|+|+....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=6e-33  Score=254.11  Aligned_cols=112  Identities=42%  Similarity=0.778  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC-CCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCC
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI-PGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGN   84 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l-p~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gn   84 (302)
                      .+..++|++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||.|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            3567899999999999999999999999999999988 699999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCC
Q 022144           85 KWATIARLLSGRTDNAIKNHWNSTLKRKCSSMS  117 (302)
Q Consensus        85 kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~  117 (302)
                      +|..||++|+|||+++|||||+.++++++....
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999999876643

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=3.6e-31  Score=258.11  Aligned_cols=110  Identities=48%  Similarity=0.843  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC-CCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCc
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI-PGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK   85 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l-p~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gnk   85 (302)
                      +..++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            457889999999999999999999999999999988 5999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           86 WATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        86 W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      |.+||++|+|||+++|||||+.+++++++..
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999987643

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.75  E-value=7.3e-19  Score=177.48  Aligned_cols=99  Identities=31%  Similarity=0.599  Sum_probs=93.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcC-C
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFG-N   84 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~G-n   84 (302)
                      -++.+++|+||++||.+|..+|++||.++|.+|-..+|||+..|||+||.|.|+...|++.||-.||+.|+.+|.+|| +
T Consensus       354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g  433 (939)
T KOG0049|consen  354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKG  433 (939)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccc
Confidence            368899999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             cHHHHhhhcCCCCHHHHHHH
Q 022144           85 KWATIARLLSGRTDNAIKNH  104 (302)
Q Consensus        85 kW~~IA~~l~gRT~~q~knR  104 (302)
                      +|.+||.+|++||..|...|
T Consensus       434 ~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  434 NWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             hHHHHHHHccccchhHHHHH
Confidence            99999999999999554433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.71  E-value=1.4e-17  Score=168.26  Aligned_cols=112  Identities=26%  Similarity=0.484  Sum_probs=103.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcC-Cc
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFG-NK   85 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~G-nk   85 (302)
                      +....||.|||.+|+++|.....   .+|.+|-.+|+||+..|...||.+.|+|.+++|.||.+||.+|+.+|.+|| ..
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd  382 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD  382 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence            34578999999999999998743   479999999999999999999999999999999999999999999999999 56


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccc
Q 022144           86 WATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ  121 (302)
Q Consensus        86 W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~  121 (302)
                      |.+|-..||||++.||+.||.+.|.+..+...|.-.
T Consensus       383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~  418 (939)
T KOG0049|consen  383 WAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLV  418 (939)
T ss_pred             hhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeec
Confidence            999999999999999999999999999888766543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.66  E-value=1e-16  Score=117.02  Aligned_cols=60  Identities=43%  Similarity=0.926  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHH
Q 022144           15 WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETI   75 (302)
Q Consensus        15 WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~L   75 (302)
                      ||+|||++|+++|.+|| .+|..||+.|++|+..+|+.||.++|++.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5799999999779999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.59  E-value=1.7e-15  Score=152.09  Aligned_cols=108  Identities=33%  Similarity=0.645  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW   86 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW   86 (302)
                      ...++.|.|+..||+.|..+|+.||+.+|..||..+.-|++++|+.||.++++|.+++..|+.|||..|+.+..++|.+|
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            34688999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144           87 ATIARLLSGRTDNAIKNHWNSTLKRKCS  114 (302)
Q Consensus        87 ~~IA~~l~gRT~~q~knRw~~~Lkrk~~  114 (302)
                      ..||..+++||..+|.++|..++....+
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999887765

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=8.6e-15  Score=145.33  Aligned_cols=108  Identities=30%  Similarity=0.556  Sum_probs=102.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHH
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATI   89 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~I   89 (302)
                      ++-|-|+.-||+.|...|.+||...|++|++.+.-.+.+||+.||..+|+|.+++..|+.|||++|+.+...+-..|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            46789999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHhhhhccCCCc
Q 022144           90 ARLLSGRTDNAIKNHWNSTLKRKCSSMSD  118 (302)
Q Consensus        90 A~~l~gRT~~q~knRw~~~Lkrk~~~~~~  118 (302)
                      +..+ |||.+||-.||+++|-...+....
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999 999999999999999887766543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.43  E-value=3.3e-14  Score=99.89  Aligned_cols=47  Identities=51%  Similarity=1.032  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCcccccccccccC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQL   58 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr~Rw~n~L   58 (302)
                      |++||+|||++|+++|.+||.++|..||..|+ +||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999877999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.42  E-value=3.5e-13  Score=94.65  Aligned_cols=46  Identities=35%  Similarity=0.731  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCc-HHHHhhhcC-CCCHHHHHHHHHHHh
Q 022144           64 HRPFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNSTL  109 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~Gnk-W~~IA~~l~-gRT~~q~knRw~~~L  109 (302)
                      +++||+|||++|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999987 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.37  E-value=7e-13  Score=96.67  Aligned_cols=55  Identities=35%  Similarity=0.589  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccc
Q 022144           67 FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ  121 (302)
Q Consensus        67 WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~  121 (302)
                      ||+|||++|++++.+||++|..||++|+.||..+|++||+..|+.+++...+...
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~e   55 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKE   55 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHH
Confidence            9999999999999999999999999996699999999999988777766655443

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.36  E-value=9.5e-13  Score=133.94  Aligned_cols=103  Identities=26%  Similarity=0.572  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCC--CCCCCChHHHHHHHHHHH-------h
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV--EHRPFTPEEDETILRAHA-------R   81 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~--kk~~WT~EED~~Ll~lv~-------~   81 (302)
                      .||.||+||++.|..+|.++| .+|..|++.| ||.+..|++||.++...+.  +++.||-||++.|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999 5699999888 8999999999999999885  889999999999999995       3


Q ss_pred             c-------------------CCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144           82 F-------------------GNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        82 ~-------------------GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~  115 (302)
                      |                   +-+|..|++.+..|+..+|+.+|+.++.+....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence            3                   125999999999999999999999998876544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.25  E-value=8.1e-12  Score=115.29  Aligned_cols=76  Identities=17%  Similarity=0.352  Sum_probs=64.8

Q ss_pred             CCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhc-CCCCHHHHHHHHHHHhhhhccCCCcc
Q 022144           42 IPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFG-NKWATIARLL-SGRTDNAIKNHWNSTLKRKCSSMSDE  119 (302)
Q Consensus        42 lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l-~gRT~~q~knRw~~~Lkrk~~~~~~~  119 (302)
                      ++.|+..-|.       ++.+++++||+|||++|+++|++|| ++|..||+++ ++||..||+.||.++|+..+.+..+.
T Consensus        10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT   82 (249)
T PLN03212         10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT   82 (249)
T ss_pred             CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence            4555555553       3578999999999999999999999 6899999988 59999999999999999999998877


Q ss_pred             ccccc
Q 022144          120 SQVDA  124 (302)
Q Consensus       120 ~~~~~  124 (302)
                      .+++.
T Consensus        83 ~EED~   87 (249)
T PLN03212         83 SDEED   87 (249)
T ss_pred             hHHHH
Confidence            66554

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.23  E-value=1.9e-11  Score=83.23  Aligned_cols=47  Identities=38%  Similarity=0.762  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           64 HRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      ++.||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998765

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.15  E-value=3e-11  Score=82.24  Aligned_cols=48  Identities=52%  Similarity=1.052  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      ++.||++||++|..++.+||..+|..||..|++||..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            478999999999999999997789999999999999999999988764

>PLN03091 hypothetical protein; Provisional

Probab=99.13  E-value=5e-11  Score=117.52  Aligned_cols=66  Identities=20%  Similarity=0.444  Sum_probs=58.4

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC-CCCHHHHHHHHHHHhhhhccCCCcccccc
Q 022144           58 LSPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLS-GRTDNAIKNHWNSTLKRKCSSMSDESQVD  123 (302)
Q Consensus        58 L~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~-gRT~~q~knRw~~~Lkrk~~~~~~~~~~~  123 (302)
                      .+..+++++||+|||++|+++|++|| ++|..||+++. ||+++||+.||.++|+..+.+..+..++|
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED   75 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE   75 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHH
Confidence            34678999999999999999999999 68999999884 99999999999999999998877665544

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.12  E-value=1.4e-10  Score=77.86  Aligned_cols=44  Identities=43%  Similarity=0.860  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHh
Q 022144           66 PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTL  109 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~L  109 (302)
                      +||.|||.+|+.++.+|| .+|..||+.+++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.07  E-value=9.8e-11  Score=107.96  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC-CCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144           61 QVEHRPFTPEEDETILRAHARFG-NKWATIARLLS-GRTDNAIKNHWNSTLKRKCSSMSDESQVDA  124 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~-gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~  124 (302)
                      .+.+|+||+|||++|+++|++|| ++|..|++.++ +|+.++|+-||.++|+..+++.....+++.
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~   71 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEED   71 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHH
Confidence            34579999999999999999999 67999999999 999999999999999999998776654443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.01  E-value=2.3e-10  Score=76.79  Aligned_cols=45  Identities=53%  Similarity=1.069  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144           14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      +||.+||++|++++.+||..+|..||..+++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999999999999997753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.97  E-value=1.3e-09  Score=111.33  Aligned_cols=99  Identities=28%  Similarity=0.467  Sum_probs=86.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----------------CC------CCHHHHHhhCCCCCcccccc---cccccCCCCCCCC
Q 022144           12 KGPWSPEEDEALQRLVQNY-----------------GP------RNWSLISKSIPGRSGKSCRL---RWCNQLSPQVEHR   65 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~-----------------G~------~nW~~IA~~lp~Rt~kqCr~---Rw~n~L~p~~kk~   65 (302)
                      -+.|+.+||..|.+.|..|                 ..      .-|+.|...||-|+.++++.   |-++.|.+  ++|
T Consensus       308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~--~rg  385 (607)
T KOG0051|consen  308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFEN--KRG  385 (607)
T ss_pred             hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccc--ccC
Confidence            3789999999999999988                 11      01788899999999999887   55555554  999


Q ss_pred             CCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           66 PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      .||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+..-
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~  432 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGS  432 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999 9999999999999887653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.22  E-value=1.6e-07  Score=95.16  Aligned_cols=101  Identities=24%  Similarity=0.516  Sum_probs=86.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCC--CCCCCCCChHHHHHHHHHHHhc--C
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP--QVEHRPFTPEEDETILRAHARF--G   83 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p--~~kk~~WT~EED~~Ll~lv~~~--G   83 (302)
                      +...+|.||.||+..|..++..+| ..|..|.+.+ +|-+..|++||.++...  .+++++|+.||+.+|...+...  +
T Consensus       287 ~f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~  364 (512)
T COG5147         287 IFEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLE  364 (512)
T ss_pred             HHhhhccCcccccccccccccccc-chhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHH
Confidence            345689999999999999999999 5699999876 89999999999999988  6888999999999999888632  1


Q ss_pred             ------CcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           84 ------NKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        84 ------nkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                            ..|..|+.++.+|....|+.++..+..
T Consensus       365 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         365 AQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             HhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                  359999999999998888887765443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.04  E-value=1.4e-05  Score=58.78  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=41.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCC-cH---HHHhhhcC-CC-CHHHHHHHHHHHhh
Q 022144           63 EHRPFTPEEDETILRAHARFGN-KW---ATIARLLS-GR-TDNAIKNHWNSTLK  110 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~Gn-kW---~~IA~~l~-gR-T~~q~knRw~~~Lk  110 (302)
                      .+-.||+||++++++++..||. +|   ..|++.+. .| |..+|+.|++.+..
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            3568999999999999999995 99   99999875 35 99999999987754

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.83  E-value=3.4e-05  Score=76.48  Aligned_cols=51  Identities=22%  Similarity=0.461  Sum_probs=45.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           61 QVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      .+-...||.+|+.+|++++..|| ++|..||.++..||..+|+.||.+++-.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            34557899999999999999999 9999999999999999999999876543

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.76  E-value=8.2e-05  Score=67.45  Aligned_cols=98  Identities=17%  Similarity=0.319  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhC---CCCCcccccccccccCC----------------C-----CCCCCCCCh
Q 022144           14 PWSPEEDEALQRLVQNYGPRNWSLISKSI---PGRSGKSCRLRWCNQLS----------------P-----QVEHRPFTP   69 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~G~~nW~~IA~~l---p~Rt~kqCr~Rw~n~L~----------------p-----~~kk~~WT~   69 (302)
                      +|++++|-+|+.+|.+-.  +-..|+..+   ..-|.+.+.+||+..|-                |     ...+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999999866  688887765   33455667789998763                2     234568999


Q ss_pred             HHHHHHHHHHHhcCC---cHHHHhh-----hcCCCCHHHHHHHHHHHhhhhc
Q 022144           70 EEDETILRAHARFGN---KWATIAR-----LLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        70 EED~~Ll~lv~~~Gn---kW~~IA~-----~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      +|+++|.........   .+.+|-.     +-++||+.++.+||+.+.+..+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999998766653   4666633     3478999999999996655543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.71  E-value=2e-05  Score=78.05  Aligned_cols=52  Identities=19%  Similarity=0.502  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      ...+...-||.+|+-+|+++++.||.+||..||.+|..|+...|+++|.+++
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            3456778899999999999999999999999999999999999999998865

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=3.5e-05  Score=77.80  Aligned_cols=61  Identities=25%  Similarity=0.432  Sum_probs=54.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccc
Q 022144           62 VEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV  122 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~  122 (302)
                      ++-+-|+..||+.|..++.+|| |.|++|+.+++-.|..||++||+..+...++.-.++..+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~ee   66 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREE   66 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhH
Confidence            4668999999999999999999 889999999999999999999999999888776555433

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.62  E-value=4.8e-05  Score=55.90  Aligned_cols=47  Identities=13%  Similarity=0.249  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCH---HHHHhhCC-CC-CcccccccccccC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNW---SLISKSIP-GR-SGKSCRLRWCNQL   58 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW---~~IA~~lp-~R-t~kqCr~Rw~n~L   58 (302)
                      +-.||+||.++++++|+.+|.++|   ..|+..|. .| |..||+.+++.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            557999999999999999997799   99999883 45 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.39  E-value=0.00019  Score=62.95  Aligned_cols=53  Identities=25%  Similarity=0.441  Sum_probs=46.3

Q ss_pred             CCCCCChHHHHHHHHHHHhc---C----CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           63 EHRPFTPEEDETILRAHARF---G----NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~---G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      +...||.|||.+|.+.|-+|   |    .-+..+++.| +||..+|.=|||.++|+++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            56789999999999999887   3    2388999999 9999999999999999987653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.21  E-value=0.0002  Score=71.67  Aligned_cols=46  Identities=20%  Similarity=0.474  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      ....||.+|..+|++.|+.|| .+|.+||.++.+|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            556899999999999999999 5799999999999999999998764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.11  E-value=0.0005  Score=68.92  Aligned_cols=45  Identities=18%  Similarity=0.391  Sum_probs=42.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHH
Q 022144           63 EHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNS  107 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~  107 (302)
                      ....||.+|..+|++++..||..|.+||+++++||..||.-||.+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            445899999999999999999999999999999999999999964

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.08  E-value=0.00066  Score=69.29  Aligned_cols=46  Identities=15%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHH
Q 022144           62 VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNS  107 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~  107 (302)
                      ..+..||++|.-+|++++..||-+|.+||.++.+||..+|..|+..
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            4467899999999999999999999999999999999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.04  E-value=0.00041  Score=70.73  Aligned_cols=49  Identities=18%  Similarity=0.514  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      ..-.++.||.+|+-+|++.|+.|| .+|.+|+.++.+||..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            456788999999999999999999 6799999999999999999988653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.00087  Score=51.81  Aligned_cols=49  Identities=29%  Similarity=0.541  Sum_probs=34.8

Q ss_pred             CCCCChHHHHHHHHHHHh------cC--C------cHHHHhhhcC----CCCHHHHHHHHHHHhhhh
Q 022144           64 HRPFTPEEDETILRAHAR------FG--N------KWATIARLLS----GRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~------~G--n------kW~~IA~~l~----gRT~~q~knRw~~~Lkrk  112 (302)
                      +..||.+|...||++...      ++  +      -|..||..|.    .||..||+++|.++.+.-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      3999999773    599999999999866554

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.89  E-value=0.0017  Score=48.93  Aligned_cols=50  Identities=22%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CCCCChHHHHHHHHHHHhcC--------Cc-HHHHhhhcC-CCCHHHHHHHHHHHhhhhc
Q 022144           64 HRPFTPEEDETILRAHARFG--------NK-WATIARLLS-GRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G--------nk-W~~IA~~l~-gRT~~q~knRw~~~Lkrk~  113 (302)
                      +.+||.|||+.|++.|+++.        |+ |.++++.-+ .+|-.+.++||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997542        22 999998766 9999999999998887664

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.86  E-value=0.0011  Score=58.88  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=44.8

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCc-------HHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144           62 VEHRPFTPEEDETILRAHARFGNK-------WATIARLLSGRTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~Gnk-------W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~  115 (302)
                      .++..||.|||.+|-+.|.+|+..       ...++..| +||..+|..|||.++++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            456799999999999999888732       66667788 999999999999999988654

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.70  E-value=0.0036  Score=68.91  Aligned_cols=100  Identities=17%  Similarity=0.369  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccc-------ccccc------C---------------------
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRL-------RWCNQ------L---------------------   58 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~-------Rw~n~------L---------------------   58 (302)
                      ..|+.-|=..++.+..+||..+...||..|.++|...++.       ||..+      +                     
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999889999999998888865542       22211      0                     


Q ss_pred             ----------------CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhh------------cCCCCHHHHHHHHHHHh
Q 022144           59 ----------------SPQVEHRPFTPEEDETILRAHARFG-NKWATIARL------------LSGRTDNAIKNHWNSTL  109 (302)
Q Consensus        59 ----------------~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~------------l~gRT~~q~knRw~~~L  109 (302)
                                      .+..++..||+|||+.|+-.+.+|| .+|.+|-..            |..||+..|..|.+.++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                            0233456799999999999999999 789999442            36899999999999888


Q ss_pred             hhh
Q 022144          110 KRK  112 (302)
Q Consensus       110 krk  112 (302)
                      +-.
T Consensus       985 ~~~  987 (1033)
T PLN03142        985 RLI  987 (1033)
T ss_pred             HHH
Confidence            765

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.55  E-value=0.0027  Score=61.26  Aligned_cols=47  Identities=19%  Similarity=0.473  Sum_probs=43.1

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           64 HRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      -..|+.+|+-+|+++....| ++|..||.++..|+...||.||..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            35799999999999999999 999999999999999999999987654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.44  E-value=0.001  Score=50.11  Aligned_cols=51  Identities=25%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------CC--HHHHHhhCC-CCCcccccccccccCCCCC
Q 022144           12 KGPWSPEEDEALQRLVQNYGP------RN--WSLISKSIP-GRSGKSCRLRWCNQLSPQV   62 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~------~n--W~~IA~~lp-~Rt~kqCr~Rw~n~L~p~~   62 (302)
                      |-+||.|||+.|+++|..+..      +|  |.+++..-+ .+|-.+-++||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            467999999999999976521      12  999998776 8899999999999887543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.20  E-value=0.015  Score=44.15  Aligned_cols=48  Identities=25%  Similarity=0.486  Sum_probs=39.4

Q ss_pred             CCCCChHHHHHHHHHHHhcC----C-------------cHHHHhhhc-----CCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFG----N-------------KWATIARLL-----SGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G----n-------------kW~~IA~~l-----~gRT~~q~knRw~~~Lkr  111 (302)
                      ...||.+|...|++++.+|-    +             -|..|+..|     +.||..+|+.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998872    1             199999876     359999999999877543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.16  E-value=0.0023  Score=49.41  Aligned_cols=46  Identities=28%  Similarity=0.607  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--C--C---CHHHHHhhC----CCCCccccccccccc
Q 022144           12 KGPWSPEEDEALQRLVQN--Y----G--P--R---NWSLISKSI----PGRSGKSCRLRWCNQ   57 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k--~----G--~--~---nW~~IA~~l----p~Rt~kqCr~Rw~n~   57 (302)
                      |-.||.+|...|+.++..  +    +  .  .   -|..||..|    ..||+.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999987  2    1  1  1   399999887    579999999999874

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.89  E-value=0.0046  Score=54.36  Aligned_cols=49  Identities=22%  Similarity=0.537  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC---CCHHHHHhhCCCCCcccccccccccCCC
Q 022144           11 IKGPWSPEEDEALQRLVQNY---GP---RNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~---G~---~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p   60 (302)
                      ....||.|||.+|.+.|-+|   |.   .-+.+|+..| +||..-|.-||..++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence            35679999999999999999   21   1388888887 89999999999988753

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.40  E-value=0.0058  Score=59.07  Aligned_cols=47  Identities=19%  Similarity=0.390  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      --|+.+|+-+|++..+..|.+||..||.++..|+...|+.+|.+++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            46999999999999999999999999999999999999999988764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.31  E-value=0.0065  Score=46.16  Aligned_cols=47  Identities=32%  Similarity=0.477  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----CC-----------CCHHHHHhhC-----CCCCcccccccccccC
Q 022144           12 KGPWSPEEDEALQRLVQNY-----GP-----------RNWSLISKSI-----PGRSGKSCRLRWCNQL   58 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~-----G~-----------~nW~~IA~~l-----p~Rt~kqCr~Rw~n~L   58 (302)
                      +..||.+|.+.|+++|++|     +.           .-|..|+..|     ..|+..+|+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999998     21           1299999877     4689999999998754

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.93  E-value=0.058  Score=45.23  Aligned_cols=52  Identities=21%  Similarity=0.432  Sum_probs=41.6

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCC----cHHHHhhh------------cCCCCHHHHHHHHHHHhhhh
Q 022144           61 QVEHRPFTPEEDETILRAHARFGN----KWATIARL------------LSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~------------l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..++..||+|||+-|+-.+.+||-    .|..|-..            |..||+..|..|.+.+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            556789999999999999999995    79998653            36799999999999888654

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.41  E-value=0.015  Score=51.61  Aligned_cols=48  Identities=19%  Similarity=0.479  Sum_probs=37.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC------HHHHHhhCCCCCcccccccccccCC
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRN------WSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~n------W~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      .+..||.|||.+|.+.|.+|+...      ...++..| +|+...|..||..++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            467899999999999999996433      45555555 8999999999965543

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.35  E-value=0.031  Score=55.35  Aligned_cols=84  Identities=17%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             CCCHHHHHhhCCCCCcccccccccccCCC-------------------------CCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144           32 PRNWSLISKSIPGRSGKSCRLRWCNQLSP-------------------------QVEHRPFTPEEDETILRAHARFGNKW   86 (302)
Q Consensus        32 ~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p-------------------------~~kk~~WT~EED~~Ll~lv~~~GnkW   86 (302)
                      .+.|..+.-..+.|...-...||...-++                         .+.-..||.||-+.|.+++++|.-+|
T Consensus        73 ~~~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf  152 (445)
T KOG2656|consen   73 VRPWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRF  152 (445)
T ss_pred             CCCceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeE
Confidence            35688877667778888888888776322                         12335699999999999999999999


Q ss_pred             HHHhhh-----cCC-CCHHHHHHHHHHHhhhhccC
Q 022144           87 ATIARL-----LSG-RTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        87 ~~IA~~-----l~g-RT~~q~knRw~~~Lkrk~~~  115 (302)
                      --|+..     ++. ||-..+|.||+.+.++.+..
T Consensus       153 ~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  153 FVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EEEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            999875     555 99999999999888776554

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.68  E-value=0.19  Score=39.15  Aligned_cols=45  Identities=31%  Similarity=0.547  Sum_probs=34.3

Q ss_pred             CCChHHHHHHHHHHHhc---CC----------cHHHHhhhcC-----CCCHHHHHHHHHHHhh
Q 022144           66 PFTPEEDETILRAHARF---GN----------KWATIARLLS-----GRTDNAIKNHWNSTLK  110 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~---Gn----------kW~~IA~~l~-----gRT~~q~knRw~~~Lk  110 (302)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..|..+|++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            59999999999998543   21          2999998773     2588999999975443

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.54  E-value=0.3  Score=47.27  Aligned_cols=49  Identities=20%  Similarity=0.378  Sum_probs=39.4

Q ss_pred             CCCCChHHHHHHHHHHHhc----------CCcHHHHhhhcC----CCCHHHHHHHHHHHhhhh
Q 022144           64 HRPFTPEEDETILRAHARF----------GNKWATIARLLS----GRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~----------GnkW~~IA~~l~----gRT~~q~knRw~~~Lkrk  112 (302)
                      ...|+.+|-..||++..+.          +..|..||+.+.    -||+.+|+++|.++.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            4789999999999997542          345999999552    499999999999877653

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=91.25  E-value=0.6  Score=47.33  Aligned_cols=50  Identities=20%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           63 EHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      -+..||.||--++-++...||.++.+|-..||+|+-..|...|+...+.+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999887665544

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=91.10  E-value=0.66  Score=32.43  Aligned_cols=42  Identities=26%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           69 PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        69 ~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      +++++.++.++...|-.|.+||..+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4678889999999999999999999 99999999998876654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.25  E-value=0.22  Score=49.43  Aligned_cols=44  Identities=27%  Similarity=0.507  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      -+|+.+|-+++.+++...| -++..|+..+|+|..+|+..+|.+-
T Consensus       366 ~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             CcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHHH
Confidence            4799999999999999999 5699999999999999999998763

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.02  E-value=0.8  Score=45.57  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=43.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      -.+||.+|-+++..+...+|..++.|+.+||.|...|||-+|.+--|+
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            358999999999999999999999999999999999999999754333

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=87.44  E-value=0.82  Score=35.94  Aligned_cols=31  Identities=39%  Similarity=0.762  Sum_probs=19.3

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCCHHHHHhh
Q 022144            8 VDRIKGPWSPEEDEAL--------QRLVQNYGPRNWSLISKS   41 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L--------~~lV~k~G~~nW~~IA~~   41 (302)
                      |.-..|-||+|+|+.|        .+++++||   +..|...
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5567899999999999        56777888   6677653

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.80  E-value=0.57  Score=45.30  Aligned_cols=46  Identities=24%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHHHHHHh---------CCCCHHHHHhhC----CCCCcccccccccccC
Q 022144           13 GPWSPEEDEALQRLVQNY---------GPRNWSLISKSI----PGRSGKSCRLRWCNQL   58 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~---------G~~nW~~IA~~l----p~Rt~kqCr~Rw~n~L   58 (302)
                      ..|+.+|-..|+++....         ....|..||..+    ..|++.||+.+|.|..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            689999999999998754         113499999855    5699999999998743

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=84.80  E-value=1.1  Score=37.66  Aligned_cols=34  Identities=35%  Similarity=0.556  Sum_probs=28.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGP---RNWSLISKSI   42 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~---~nW~~IA~~l   42 (302)
                      ...+..||.+||.-|+-++.+||.   ++|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            556788999999999999999998   7899998765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=83.48  E-value=0.78  Score=48.95  Aligned_cols=42  Identities=14%  Similarity=0.494  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWC   55 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~   55 (302)
                      ..||+.|..++.+++-.|. +++.+|++.++++|.+||-+-|+
T Consensus       620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYY  661 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYY  661 (907)
T ss_pred             ccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHH
Confidence            4799999999999999999 68999999999999999976543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=82.09  E-value=1.1  Score=34.74  Aligned_cols=43  Identities=26%  Similarity=0.560  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------CHHHHHhhCCC-----CCcccccccccc
Q 022144           14 PWSPEEDEALQRLVQNY---GPR---------NWSLISKSIPG-----RSGKSCRLRWCN   56 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~---G~~---------nW~~IA~~lp~-----Rt~kqCr~Rw~n   56 (302)
                      .||+++++.|++++...   |..         .|..|+..|..     .+..||+.||..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~   60 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT   60 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            59999999999998654   222         29999888733     345677777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		6e-34
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		6e-34
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-34
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-32
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-31
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		5e-27
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		4e-19
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		7e-16
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-13
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-13
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		6e-13
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-12
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-12
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		3e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		3e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		3e-05
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		9e-04

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  140 bits (354), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%)
Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T E
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           ED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 77/107 (71%)
Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           D +KGPW+ EED+ +  LV+ YG + W+LI+K + GR GK CR RW N L+P+V+   +T
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115
            EED  I  AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK  +
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 75/102 (73%)
Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           KGPW+ EED+ +   VQ YGP+ WS I+K + GR GK CR RW N L+P+V+   +T EE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 72  DETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           D  I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK 
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           +KGP++  ED+ ++  V+  GP+NW  I+  +P RS K CR RW N L P V    +TPE
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV 122
           EDETI R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+ S+  ++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           K  ++PEEDE L+R V  +G  +W +I+ + P R+ + CR RW N L+P + H P+T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 72  DETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105
           D  +++    +G +WA IA+   GRTD  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 59/94 (62%)
Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           K  ++ EED  LQ+LV  YG ++W  IS+ +  R+ + CR RW N ++P +   P++PEE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 72  DETILRAHARFGNKWATIARLLSGRTDNAIKNHW 105
           D  + + +A +G KW  I++ L  R+DN I+N W
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 62  VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
           V+   +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 61  QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
           +V+   +T EED  + +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+  G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+  G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
          K  W+ EEDE L+ LV+ +G ++W  ++   P R+ + C+ RW   LS
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 15 WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
          W   EDE L+  V  YG   WS I+  +  +S K C+ RW   L P ++   ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	7e-72
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	8e-72
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-10
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	6e-71
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	7e-67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-39
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-31
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-06
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-31
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-04
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-28
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-26
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-14
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-12
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-12
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-07
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-11
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-10
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-10
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-09
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-09
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-09
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	6e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	7e-09
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	9e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	1e-04
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	1e-04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	4e-04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	6e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  215 bits (551), Expect = 7e-72
 Identities = 62/104 (59%), Positives = 80/104 (76%)

Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           + IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60

Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
            EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  216 bits (553), Expect = 8e-72
 Identities = 52/112 (46%), Positives = 77/112 (68%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
           +KGP++  ED+ ++  V+  GP+NW  I+  +P RS K CR RW N L P V    +TPE
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 71  EDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV 122
           EDETI R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+ S+  ++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           K  W+PEEDE + R     G + WS+I+K IPGR+  + + RW + +S ++         
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRISTNS----N 108

Query: 72  DETILRAHARFGNKWATIARLL 93
            + IL        K A + + L
Sbjct: 109 HKEILLPDRSKKRKAADVPKKL 130

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  214 bits (547), Expect = 6e-71
 Identities = 59/104 (56%), Positives = 76/104 (73%)

Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           +  KGPW+ EED+ +   VQ YGP+ WS I+K + GR GK CR RW N L+P+V+   +T
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83

Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
            EED  I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  203 bits (518), Expect = 7e-67
 Identities = 37/101 (36%), Positives = 61/101 (60%)

Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           K  ++ EED  LQ+LV  YG ++W  IS+ +  R+ + CR RW N ++P +   P++PEE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 72  DETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
           D  + + +A +G KW  I++ L  R+DN I+N W    + +
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  203 bits (519), Expect = 1e-66
 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 12  KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           K  ++PEEDE L+R V  +G  +W +I+ + P R+ + CR RW N L+P + H P+T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69

Query: 72  DETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDE 119
           D  +++    +G +WA IA+   GRTD  IKN W +   +     + +
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQ 117

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  201 bits (514), Expect = 1e-65
 Identities = 62/104 (59%), Positives = 80/104 (76%)

Query: 9   DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 68
           + IKGPW+ EED+ + +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 69  PEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 112
            EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  134 bits (339), Expect = 3e-39
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 11  IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE 70
            K  W+ EEDE L++LV+  G  +W +I+  +P R+   C+ RW   L+P++   P+T E
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 71  EDETILRAHARFGNK-WATIARLLSGRTDNAI----KNHWNSTLKR 111
           ED+ +++   ++G K W+ IA+ L GR          NH N  +K+
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  110 bits (278), Expect = 2e-31
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
           G W   EDE L+  V  YG   WS I+  +  +S K C+ RW   L P ++   ++   
Sbjct: 9  GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 59  SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIK----NHWNSTLKRK 112
               +   +   EDE +  A  ++G N+W+ IA LL  ++    K       + ++K+ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  109 bits (276), Expect = 4e-31
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 66 PFTPEEDETILRAHARFG-NKWATIARLLSGRT 97
          P+T EED+ +++   ++G  +W+ IA+ L GR 
Sbjct: 5  PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score =  103 bits (259), Expect = 1e-28
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
           K  W+ EEDE L++LV+  G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.8 bits (112), Expect = 9e-08
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 66  PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK 110
            +T EEDE + +   + G + W  IA  L  RTD   ++ W   L 
Sbjct: 5   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 98.5 bits (246), Expect = 1e-26
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
          K  W+ EEDE L+ LV+ +G ++W  ++   P R+ + C+ RW   LS 
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 65  RPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK 110
             +T EEDE +     +FG   W  +A     RTD   +  W   L 
Sbjct: 9   VKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 66.9 bits (164), Expect = 7e-15
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          +  W  EED+ L+  V+ YG  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 65  RPFTPEEDETILRAHARFGN-KWATIARL--LSGRTDNAIKNHWNSTLKRK 112
           + +  EED+ +     ++G   W+ I      + RT   +K+ W +  K K
Sbjct: 3   QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          + +K   R +  W  EED+ L+  V+ YG  NWS I        R+    + RW  
Sbjct: 1  TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 64  HRPFTPEEDETILRAHARFGN-KWATIARL--LSGRTDNAIKNHWNSTLKRKCSSMSDE 119
            + +  EED+ +     ++G   W+ I      + RT   +K+ W +  K K  S   E
Sbjct: 10  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCN 56
            K  W+ EE E ++  VQ YG  NW+ ISK+ P   R+    + RW  
Sbjct: 9  TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 56  NQLSPQVEHRPFTPEEDETILRAHARFGN-KWATIARL--LSGRTDNAIKNHWNSTLKR 111
           +  +   + + +T EE E +     ++G   WA I++      RT   IK+ W  T+KR
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 60

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          K  W+ EE E ++  VQ YG  NW+ ISK+ P   R+    + RW  
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 65  RPFTPEEDETILRAHARFGN-KWATIARL--LSGRTDNAIKNHWNSTLKR 111
           + +T EE E +     ++G   WA I++      RT   IK+ W  T+KR
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 65
          K  WS EE+E L  L +   P  W  I+  I GR+   C   +   L    +  
Sbjct: 9  KTEWSREEEEKLLHLAKLM-PTQWRTIA-PIIGRTAAQCLEHYEFLLDKAAQRD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 60  PQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDE 119
              +   ++ EE+E +L        +W TIA ++ GRT      H+   L +     S  
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 120 SQ 121
           S 
Sbjct: 64  SS 65

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
             W+ +E+ AL   V + G  NW  ++  +  ++ + C   +    S
Sbjct: 8  DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 3   STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLI----SKSIPGRSGKSCRLRWCNQL 58
                  RI+ P++  E E L   V++ G   W  +     +++  R+    + +W   +
Sbjct: 22  RPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81

Query: 59  ------SPQVEHRPFTPEEDETILRAHARFGNKWA 87
                   Q    P   E  + +L A A +    +
Sbjct: 82  HTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 3   STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISK----SIPGRSGKSCRLRW---- 54
             +    RI+ P+S  E EAL + V+  G   W  +          R+    + +W    
Sbjct: 4   MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63

Query: 55  --CNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIAR 91
                   Q    P   E    +L AH  +  +     +
Sbjct: 64  HTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRW 54
                G ++PEE E L+ L   +G  +W+ I  ++ GRS  S + R 
Sbjct: 18 GDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 67  FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 115
           +TPEE E +     + GN WATI   L GR+ +++K+     +K  C++
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RLMKDTCNT 72

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 3   STKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISK----SIPGRSGKSCRLRWCNQL 58
            ++    RI+ P+S  E EAL   V++ G   W  +      +   R+    + +W   +
Sbjct: 8   RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67

Query: 59  ------SPQVEHRPFTPEEDETILRAHARFGNKWA 87
                   Q    P   +  + +L AHA +  +  
Sbjct: 68  HTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 14/160 (8%)

Query: 12  KGPWSPEEDEALQRLVQN-----YGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRP 66
           K  ++ EEDE +  +V+           +  IS  +P  +G S R R+   LS ++E+  
Sbjct: 8   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 67

Query: 67  FTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAIN 126
              +  + +       GN   T           +IK  +++      +    +     + 
Sbjct: 68  EVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRDLF 118

Query: 127 PLPLKRANSVGPSNNISGLCLNPGSPSGSDSSDSSLPGVA 166
            +      S+    +              +    S P  A
Sbjct: 119 QIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFA 158

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 60  PQVEHRPFTPEEDETIL---RAHARFGNK---WATIARLLSGRTDNAIKNHWNSTLKRK 112
           P      FT EEDE IL   R +         +  I+  +   T N+I++ +   L ++
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISK----SIPGRSGKSCRLRWCN-----QLSPQVEH 64
          P+S  E EAL   V++ G   W  +      +   R+    + +W        ++PQ   
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 65 -RPFTPEEDETILRAHARFGNK 85
            P   +  + +L AHA +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 65  RPFTPEEDETILRAHARFG-NKWATIARL----LSGRTDNAIKNHWNSTLKRKCSSMSDE 119
           RPF+  E E ++ A    G  +W  +          RT   +K+ W + +     +    
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA---- 56

Query: 120 SQVDAINPLP 129
            Q     P+P
Sbjct: 57  PQQRRGEPVP 66

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2  ASTKKDVDRIKGPWSPEEDEALQRLVQNY---GPRNWSLISKSIPGRSGKSCRLRW 54
          +  K+     + PW+  + + L+  +Q Y       W  I++ +P +S + C  R+
Sbjct: 8  SLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 56  NQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
           +     +  + +T EE  T  +     G  W+ IAR++  +T +  KN + +  KR+ 
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 9  DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCN 56
          +     W+ EE    ++ +  +G RNWS I++ +  ++   C+  + N
Sbjct: 13 NLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 5  KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRW 54
          K         W+ +E   L   ++ Y   +W+ +S+ +  R+   C L +
Sbjct: 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 44  GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKN 103
           G SG S  L    +       R +T +E   +L A   + + W  ++  +  RT +    
Sbjct: 1   GSSGSSGTLA---KSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECIL 57

Query: 104 HWNST-LKRKCSSMSDESQV 122
           H+    ++      SD    
Sbjct: 58  HFLRLPIEDPYLENSDSGPS 77

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 15 WSPEEDEALQRLVQNYGPRNWSLISKSI-PGRSGKSCRLRWCN 56
          W  +E+  L    +  G  NW+ I+  +   R+ + CR  +  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 9  DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCR 51
                W+ EE E  ++ +  +G R W+ ISK I  R+    +
Sbjct: 6  SGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 59  SPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSD 118
                   +T EE E   +  A+FG +W  I++L+  RT   +K++     K K     D
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 119 E 119
           +
Sbjct: 64  K 64

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSC 50
           WS +E E  +     +  +N+ LI+  +  ++   C
Sbjct: 45 MWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAEC 80

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 14 PWSPEEDEALQRLVQNYGP-----RNWSLISKSIPGRSGKSCRLR 53
           W+ EE + L++L+  Y P     R W  I+  +  R+ K    +
Sbjct: 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ 54

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 1  MASTKKDVDRIKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRW 54
          MAST+        PWS +E++A +R +  Y    P  W+ +++++ GR+ +  +  +
Sbjct: 1  MASTRGS----GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSC 50
           W+  E E  +     + P+N+ LI+  +  +S   C
Sbjct: 14 VWTDHEKEIFKDKFIQH-PKNFGLIASYLERKSVPDC 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.85
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.84
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.75
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.75
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.73
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.69
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.68
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.61
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.59
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.54
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.52
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.25
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.5
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.49
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.48
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.44
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.43
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.43
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.41
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.34
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.34
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.33
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.33
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.99
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.29
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.29
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.28
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.24
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.23
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.09
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.08
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.99
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.94
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.93
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.91
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.9
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.82
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.69
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.63
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.5
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.46
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.45
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.3
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.03
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.97
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.96
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.92
2crg_A	70	Metastasis associated protein MTA3; transcription	97.9
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.87
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.07
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.77
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.65
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.56
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.54
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.45
2crg_A	70	Metastasis associated protein MTA3; transcription	97.44
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.43
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.15
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.93
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.82
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.59
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.79
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.21
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.12
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.55
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.78
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.02
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.21

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=8.4e-35  Score=234.10  Aligned_cols=105  Identities=59%  Similarity=1.124  Sum_probs=99.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHH
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWAT   88 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~   88 (302)
                      +++||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           89 IARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        89 IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ||++|+|||+++|++||+.++++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999998863

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.5e-34  Score=232.87  Aligned_cols=104  Identities=36%  Similarity=0.725  Sum_probs=100.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhh
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIAR   91 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~   91 (302)
                      ||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            78999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhhhhccC
Q 022144           92 LLSGRTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        92 ~l~gRT~~q~knRw~~~Lkrk~~~  115 (302)
                      +|+|||+++|++||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999887543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=2.2e-34  Score=240.88  Aligned_cols=109  Identities=48%  Similarity=0.936  Sum_probs=105.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHh
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIA   90 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA   90 (302)
                      +||+||+|||++|+++|.+||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHhhhhccCCCcc
Q 022144           91 RLLSGRTDNAIKNHWNSTLKRKCSSMSDE  119 (302)
Q Consensus        91 ~~l~gRT~~q~knRw~~~Lkrk~~~~~~~  119 (302)
                      ++|+|||+++|++||+.+|++++......
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~  109 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNH  109 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999998776543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1e-33  Score=235.60  Aligned_cols=108  Identities=55%  Similarity=1.021  Sum_probs=102.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCc
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK   85 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gnk   85 (302)
                      -+++..+|+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++++||++
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~  100 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  100 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            36788999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           86 WATIARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        86 W~~IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      |..||++|+|||+++|++||+.++++++
T Consensus       101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999998763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.8e-33  Score=232.92  Aligned_cols=105  Identities=38%  Similarity=0.775  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW   86 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW   86 (302)
                      .....||+||+|||++|+++|++||. +|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            45788999999999999999999996 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           87 ATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        87 ~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..||++|+|||+++|++||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988775

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.4e-31  Score=230.05  Aligned_cols=107  Identities=58%  Similarity=1.104  Sum_probs=102.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW   86 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW   86 (302)
                      ++++.+|+||+|||++|+++|.+||..+|..||..|++||++||+.||.++|+|.+++++||+|||++|++++.+||++|
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W  132 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW  132 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence            57788999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           87 ATIARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        87 ~~IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ..||++|+|||+++|++||+.++++++
T Consensus       133 ~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          133 AEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998864

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.1e-30  Score=224.58  Aligned_cols=115  Identities=30%  Similarity=0.687  Sum_probs=69.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCC-cHH
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGN-KWA   87 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~   87 (302)
                      ...|++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            3578999999999999999999988999999999999999999999999999999999999999999999999995 799


Q ss_pred             HHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccccc
Q 022144           88 TIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVD  123 (302)
Q Consensus        88 ~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~  123 (302)
                      .||.+|+|||+++|++||+++|...+....++..++
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd  118 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED  118 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence            999999999999999999999998887766655444

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.85  E-value=7.9e-22  Score=163.76  Aligned_cols=86  Identities=27%  Similarity=0.631  Sum_probs=59.7

Q ss_pred             HHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           38 ISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        38 IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      ||+.|++||++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||.++|...+...
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence            78899999999999999999999999999999999999999999995 79999999999999999999999999888777


Q ss_pred             Ccccccc
Q 022144          117 SDESQVD  123 (302)
Q Consensus       117 ~~~~~~~  123 (302)
                      .++..+|
T Consensus        81 ~WT~eEd   87 (128)
T 1h8a_C           81 SWTEEED   87 (128)
T ss_dssp             CCCHHHH
T ss_pred             cCCHHHH
Confidence            6665544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=4.8e-22  Score=149.38  Aligned_cols=67  Identities=28%  Similarity=0.611  Sum_probs=64.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHH
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEED   72 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED   72 (302)
                      ..+.+++|+||+|||++|+++|.+||..+|..||..|++||++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            3567889999999999999999999988999999999999999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=4.8e-19  Score=161.24  Aligned_cols=105  Identities=28%  Similarity=0.395  Sum_probs=92.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhCCCCCcccccccccccCCCCCC-------------------
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRN-----WSLISKSIPGRSGKSCRLRWCNQLSPQVE-------------------   63 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~n-----W~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k-------------------   63 (302)
                      ....|++||+|||++|+++|++||.++     |.+||+.|+|||+.||+.||.++|.+.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            467889999999999999999998653     99999999999999999999999999886                   


Q ss_pred             ----------CCCCChHHHHHHHHHHHh-c--------------------------------CC----------------
Q 022144           64 ----------HRPFTPEEDETILRAHAR-F--------------------------------GN----------------   84 (302)
Q Consensus        64 ----------k~~WT~EED~~Ll~lv~~-~--------------------------------Gn----------------   84 (302)
                                +..||.|||-.|...+.+ |                                |.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      899999999999998876 1                                11                


Q ss_pred             ---------cHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           85 ---------KWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        85 ---------kW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                               .|..||+.+|+||.+++|+||..+|+..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     6999999999999999999999988776

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.75  E-value=2.6e-19  Score=148.39  Aligned_cols=84  Identities=24%  Similarity=0.384  Sum_probs=78.8

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhh----CCCCCcccccccccccCC-----CCCCCC-CCChHHHHH
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKS----IPGRSGKSCRLRWCNQLS-----PQVEHR-PFTPEEDET   74 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~----lp~Rt~kqCr~Rw~n~L~-----p~~kk~-~WT~EED~~   74 (302)
                      ....++.+++||+|||+.|+++|++||.++|..|++.    |++||..+|++||.|+|+     |.++++ +|++||+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3467899999999999999999999998899999998    489999999999999998     999998 999999999


Q ss_pred             HHHHHHhcCCcHHH
Q 022144           75 ILRAHARFGNKWAT   88 (302)
Q Consensus        75 Ll~lv~~~GnkW~~   88 (302)
                      |+++++.|||+|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.75  E-value=1.2e-18  Score=132.70  Aligned_cols=62  Identities=27%  Similarity=0.441  Sum_probs=48.3

Q ss_pred             ccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           50 CRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        50 Cr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ..-||.++|+|.+++++||+|||++|++++++||++|+.||++| |||+++||+||+. |++.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence            45689999999999999999999999999999999999999999 9999999999985 44443

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.73  E-value=2e-18  Score=143.23  Aligned_cols=81  Identities=22%  Similarity=0.347  Sum_probs=75.2

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC----CCCCcccccccccccC-----CCCCCCCCCChHH-HHH
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRPFTPEE-DET   74 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l----p~Rt~kqCr~Rw~n~L-----~p~~kk~~WT~EE-D~~   74 (302)
                      +...++.+++||+|||+.|+++|++||.++|..|++.+    ++||..+|++||.|++     +|.++++.|+++| +++
T Consensus        24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            34668899999999999999999999998999999863    8999999999999999     8999999999999 899


Q ss_pred             HHHHHHhcCCc
Q 022144           75 ILRAHARFGNK   85 (302)
Q Consensus        75 Ll~lv~~~Gnk   85 (302)
                      |+++|+.|||+
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=6.3e-18  Score=123.10  Aligned_cols=57  Identities=32%  Similarity=0.712  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCC
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE   63 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k   63 (302)
                      ++.+.|++||+|||++|+++|.+||..+|.+||..|++||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578899999999999999999999988999999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=9.7e-18  Score=118.77  Aligned_cols=52  Identities=58%  Similarity=1.192  Sum_probs=49.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~   61 (302)
                      ++||+||+|||++|+++|.+||..+|..||..|++||++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999888999999999999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.69  E-value=7.2e-17  Score=121.84  Aligned_cols=58  Identities=26%  Similarity=0.369  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccC
Q 022144           58 LSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        58 L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~  115 (302)
                      ++|.+++++||+|||++|+++|.+||++|..||++|+|||++||++||+.+++++...
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998766

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=4.1e-17  Score=121.02  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=57.0

Q ss_pred             ccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCC
Q 022144           56 NQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMS  117 (302)
Q Consensus        56 n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~  117 (302)
                      .+|+|.+++++||+|||++|++++++||++|.+||+ |+|||++||++||+.+|++.+....
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            379999999999999999999999999999999999 8899999999999999999876653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.68  E-value=1.3e-17  Score=124.79  Aligned_cols=64  Identities=27%  Similarity=0.379  Sum_probs=60.0

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCCCCCCCCCCC
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVEHRPFT   68 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~p~~kk~~WT   68 (302)
                      ++++.+.+++||+|||++|+++|++||..+|..||..|+  +||+.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            567789999999999999999999999889999999999  9999999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.67  E-value=1.9e-17  Score=117.14  Aligned_cols=52  Identities=37%  Similarity=0.810  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~   61 (302)
                      +.||+||+|||++|+++|++||..+|..||+.|++||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            3689999999999999999999879999999999999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=1.2e-16  Score=116.21  Aligned_cols=56  Identities=29%  Similarity=0.449  Sum_probs=52.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhcc
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCS  114 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~  114 (302)
                      +|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+..++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            4778999999999999999999999 6999999999999999999999999988754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-16  Score=117.99  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=58.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccc
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV  122 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~  122 (302)
                      .+.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+..++...+...+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE   68 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS   68 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence            4678999999999999999999999 899999999999999999999999999998887665544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.62  E-value=1.1e-16  Score=118.82  Aligned_cols=55  Identities=33%  Similarity=0.516  Sum_probs=49.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCCCCCC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVE   63 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~p~~k   63 (302)
                      ...|++||+|||++|+++|++||..+|..||+.++  +||+.||++||.|++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999989999999865  99999999999999988764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.61  E-value=1.3e-15  Score=113.96  Aligned_cols=60  Identities=22%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhhccCC
Q 022144           57 QLSPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        57 ~L~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      ..++..++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||+++|+..+.+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            456778899999999999999999999 79999999999  9999999999999999987664

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.61  E-value=2.2e-16  Score=115.30  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCC
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV   62 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~   62 (302)
                      .+.+.+++||+|||++|+++|++||..+|.+||+.|++||++||++||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence            45789999999999999999999998899999999999999999999999998653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=6.2e-16  Score=109.33  Aligned_cols=50  Identities=30%  Similarity=0.557  Sum_probs=46.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           62 VEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      +++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|+.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=1.2e-15  Score=108.55  Aligned_cols=50  Identities=24%  Similarity=0.495  Sum_probs=46.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhh
Q 022144           63 EHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk  112 (302)
                      ++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||.++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            578999999999999999999 79999999999  999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.59  E-value=1.9e-15  Score=110.21  Aligned_cols=54  Identities=19%  Similarity=0.369  Sum_probs=50.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      .+.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.||++||+++|...
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            3578899999999999999999999 89999999999999999999999988654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=1.2e-15  Score=107.87  Aligned_cols=50  Identities=28%  Similarity=0.715  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           62 VEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      +++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|+.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999998864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=5.8e-16  Score=110.16  Aligned_cols=49  Identities=31%  Similarity=0.484  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC--CCCcccccccccccCC
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLS   59 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp--~Rt~kqCr~Rw~n~L~   59 (302)
                      .||+||+|||++|+++|++||.++|..||..|+  +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            479999999999999999999889999999999  9999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.56  E-value=1.1e-15  Score=111.00  Aligned_cols=51  Identities=20%  Similarity=0.444  Sum_probs=47.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCcccccccccccC
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQL   58 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr~Rw~n~L   58 (302)
                      ..+.+++||+|||++|+++|++||..+|..||+.|+ +||++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999989999999999 999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.6e-15  Score=112.46  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC------CcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFG------NKWATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~G------nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      +|.+.+++||+|||++|++++.+||      ++|..||.+|+|||..||++||+++|++..+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            4788999999999999999999999      799999999999999999999999998876543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6.8e-16  Score=117.04  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHhhCCCCCcccccccccccCCCCCCCCCC
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGP-----RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPF   67 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~-----~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~W   67 (302)
                      +++..+++||+|||++|+++|.+||.     .+|.+||.+|++||..||+.||+++|.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999996     68999999999999999999999999887776643

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=6.6e-15  Score=109.10  Aligned_cols=53  Identities=25%  Similarity=0.478  Sum_probs=47.4

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC--CCCHHHHHHHHHHHhhhhc
Q 022144           61 QVEHRPFTPEEDETILRAHARFG-NKWATIARLLS--GRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~--gRT~~q~knRw~~~Lkrk~  113 (302)
                      ..++++||+|||++|+++|.+|| ++|..||++++  |||+.||++||+++++..+
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            35789999999999999999999 69999999865  9999999999999998765

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.7e-16  Score=115.82  Aligned_cols=58  Identities=26%  Similarity=0.417  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCC
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR   65 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~   65 (302)
                      -+|.+.|++||+|||++|+++|++||. +|.+||+ ++|||++||+.||.++|++.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            367899999999999999999999996 8999999 889999999999999998876654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.52  E-value=2e-14  Score=104.30  Aligned_cols=50  Identities=22%  Similarity=0.431  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcC-CCCHHHHHHHHHHHh
Q 022144           60 PQVEHRPFTPEEDETILRAHARFG-NKWATIARLLS-GRTDNAIKNHWNSTL  109 (302)
Q Consensus        60 p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~-gRT~~q~knRw~~~L  109 (302)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999998765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.25  E-value=1.5e-15  Score=119.37  Aligned_cols=57  Identities=25%  Similarity=0.357  Sum_probs=53.6

Q ss_pred             ccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           56 NQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        56 n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..++|.+++++||+|||++|+++|.+||++|..||.+|+|||++||++||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356788999999999999999999999999999999999999999999999998875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.50  E-value=2.8e-15  Score=113.03  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCC
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH   64 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk   64 (302)
                      .++++.+++||+|||++|+++|++||. +|..||.+|++||..||+.||+++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999996 8999999999999999999999998776555

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.49  E-value=1e-14  Score=118.13  Aligned_cols=80  Identities=26%  Similarity=0.397  Sum_probs=69.8

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC----CCCCcccccccccccC-----CCCCCCCCCChHHHHH-
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRPFTPEEDET-   74 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l----p~Rt~kqCr~Rw~n~L-----~p~~kk~~WT~EED~~-   74 (302)
                      ....++.+++||+|||+.|+++|++||.++|..|++.+    ++||..+|++||.+++     +|.++++.-+++|--. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            45678999999999999999999999998999999865    8999999999999998     7899999888877765 


Q ss_pred             HHHHHHhcCC
Q 022144           75 ILRAHARFGN   84 (302)
Q Consensus        75 Ll~lv~~~Gn   84 (302)
                      ++++++.+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8999888774

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.48  E-value=2.4e-14  Score=111.35  Aligned_cols=69  Identities=26%  Similarity=0.416  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhh----CCCCCcccccccccccC-----CCCCCC-CCCChHHHHHHHHHHHh
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEH-RPFTPEEDETILRAHAR   81 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~----lp~Rt~kqCr~Rw~n~L-----~p~~kk-~~WT~EED~~Ll~lv~~   81 (302)
                      ++||+|||+.|+++|++||.++|..|++.    |++||+.+|++||.|+|     +|.+++ .+..++...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999986    89999999999999987     677665 47788888999999875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.44  E-value=5.3e-14  Score=106.99  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCC
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE   63 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~k   63 (302)
                      -++++.||+||+|||++|+++|++||.+ |..||+.| |||+.||+.||.. |....+
T Consensus        17 ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           17 QGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             --CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            4789999999999999999999999965 99999999 9999999999974 544443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.43  E-value=1.4e-13  Score=113.98  Aligned_cols=66  Identities=30%  Similarity=0.504  Sum_probs=59.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA  124 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~  124 (302)
                      .+..++++||+|||++|+++|.+||.+|..||..|+|||..||+.||+++|...+....++..+|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~   71 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA   71 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHH
Confidence            457889999999999999999999999999999999999999999999999998888777655544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.7e-13  Score=104.23  Aligned_cols=54  Identities=13%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhhc
Q 022144           60 PQVEHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        60 p~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      +...+++||.|||.+|++++++||    ++|.+||++|+|||.++|++||+.+++...
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~   71 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS   71 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence            456788999999999999999999    789999999999999999999998876543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.41  E-value=2.1e-13  Score=109.05  Aligned_cols=63  Identities=25%  Similarity=0.592  Sum_probs=56.4

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCcccccc
Q 022144           61 QVEHRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVD  123 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~  123 (302)
                      .+++++||+|||++|+++|.+||. +|..||.+|+|||..||++||.++|...+....++..+|
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd   64 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED   64 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHH
Confidence            368899999999999999999996 799999999999999999999999998887776665544

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.40  E-value=8.7e-14  Score=115.84  Aligned_cols=82  Identities=32%  Similarity=0.546  Sum_probs=60.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcH
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKW   86 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW   86 (302)
                      ++.+.+|+||+|||++|+++|.+|| .+|..||+.|+|||..+|+.||+++|++.+..+.|+.+-    +......+.+|
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~  123 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKA  123 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-----
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhh
Confidence            5788999999999999999999999 569999999999999999999999999999999988763    11112234668


Q ss_pred             HHHhhhc
Q 022144           87 ATIARLL   93 (302)
Q Consensus        87 ~~IA~~l   93 (302)
                      +.|++.|
T Consensus       124 ~~i~k~~  130 (131)
T 3zqc_A          124 ADVPKKL  130 (131)
T ss_dssp             -------
T ss_pred             hhcchhc
Confidence            8887765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=1.8e-13  Score=105.47  Aligned_cols=51  Identities=18%  Similarity=0.413  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      +.....+++||+|||++|+++|++|| .+|.+||++|++||..||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            34566789999999999999999999 8899999999999999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-13  Score=104.22  Aligned_cols=48  Identities=19%  Similarity=0.346  Sum_probs=44.9

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHH
Q 022144           61 QVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNST  108 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~  108 (302)
                      ...+++||+|||++|++++.+||++|.+||++|++||..||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.34  E-value=9.9e-13  Score=105.83  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=54.6

Q ss_pred             CCCCChHHHHHHHHHHHhcCC-cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144           64 HRPFTPEEDETILRAHARFGN-KWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA  124 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~  124 (302)
                      ++.||+|||++|+++|.+||. +|..||.+|+|||..||+.||.++|...+....++..+|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~   62 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDM   62 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHH
Confidence            579999999999999999995 8999999999999999999999999988877766655443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.34  E-value=1.8e-13  Score=103.97  Aligned_cols=55  Identities=24%  Similarity=0.560  Sum_probs=49.6

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccCC
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      +.++...+++||+|||++|+++|++||   +.+|.+||.+|+|||.+||+.||++++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456778899999999999999999999   3579999999999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.33  E-value=1.5e-12  Score=101.28  Aligned_cols=49  Identities=24%  Similarity=0.544  Sum_probs=45.4

Q ss_pred             CCCChHHHHHHHHHHHhcCC-cHHHHhhh----cCCCCHHHHHHHHHHHhhhhc
Q 022144           65 RPFTPEEDETILRAHARFGN-KWATIARL----LSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~----l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ++||+|||+.|+++|++||+ +|+.|++.    |+|||+++||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999995    899999999999999998653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.33  E-value=1.5e-12  Score=95.84  Aligned_cols=51  Identities=20%  Similarity=0.421  Sum_probs=47.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCcHHHHh---hhcCCCCHHHHHHHHHHHhhhh
Q 022144           62 VEHRPFTPEEDETILRAHARFGNKWATIA---RLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA---~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      .++.+||+|||+.|+++|++||.+|..|+   .+|++||..+||+||+++.++.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            46789999999999999999999999999   4789999999999999988765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.99  E-value=1.5e-13  Score=107.88  Aligned_cols=55  Identities=18%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCC
Q 022144            5 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (302)
Q Consensus         5 ~~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p   60 (302)
                      ...+.+.+|+||+|||++|+++|.+||. +|..||..|+|||..||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            4467889999999999999999999996 799999999999999999999998863

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.29  E-value=4.2e-12  Score=102.75  Aligned_cols=56  Identities=21%  Similarity=0.454  Sum_probs=49.7

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhc----CCCCHHHHHHHHHHHhhhhcc
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFGN-KWATIARLL----SGRTDNAIKNHWNSTLKRKCS  114 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l----~gRT~~q~knRw~~~Lkrk~~  114 (302)
                      ....++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++....
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~   68 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI   68 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence            34678899999999999999999996 999999854    899999999999999987643

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.29  E-value=2.9e-12  Score=106.12  Aligned_cols=56  Identities=25%  Similarity=0.506  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhh----cCCCCHHHHHHHHHHHhhhh
Q 022144           57 QLSPQVEHRPFTPEEDETILRAHARFGN-KWATIARL----LSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        57 ~L~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~----l~gRT~~q~knRw~~~Lkrk  112 (302)
                      -+.+..++++||+|||+.|+++|++||+ +|+.|++.    |+|||+++||+||+++++..
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            3566788999999999999999999996 99999997    48999999999999999843

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.28  E-value=2.6e-12  Score=117.11  Aligned_cols=57  Identities=25%  Similarity=0.429  Sum_probs=50.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCCc------HHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           60 PQVEHRPFTPEEDETILRAHARFGNK------WATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        60 p~~kk~~WT~EED~~Ll~lv~~~Gnk------W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      +.+++++||+|||++|+++|++||++      |..||++|+|||+++||+||+.+|++++...
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v   66 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV   66 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc
Confidence            35788999999999999999999875      9999999999999999999999999998743

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.24  E-value=1.1e-11  Score=102.75  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=49.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC-cHHHHhhhc----CCCCHHHHHHHHHHHhhhhc
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFGN-KWATIARLL----SGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~Gn-kW~~IA~~l----~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ....++++||.|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+++++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            44567899999999999999999996 999999863    89999999999999997653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.23  E-value=1.1e-11  Score=98.24  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=45.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           63 EHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      .+++||.|||++|++++++||    ++|.+||++|+|||.++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    78999999999999999999999987664

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.09  E-value=2e-11  Score=96.74  Aligned_cols=48  Identities=23%  Similarity=0.614  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccC
Q 022144           11 IKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      .+++||.|||++|.+++.+|+   +..|.+||..|+|||.++|+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999997   456999999999999999999998864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2.2e-10  Score=83.67  Aligned_cols=49  Identities=16%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           62 VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      ....+||+||++++++++.+||++|..||.+|++||..+|.++|+...+
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            3457999999999999999999999999999999999999999976544

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.99  E-value=4.7e-10  Score=101.47  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           34 NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        34 nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      +|..+-..|..+.... ..+++.--........||+||+.++++++++||++|..||++|++||..||+++|+...++
T Consensus       104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4655555443333322 2244332222344679999999999999999999999999999999999999999977665

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.94  E-value=1.8e-09  Score=81.65  Aligned_cols=51  Identities=20%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           61 QVEHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..+.+.||.|||++|.+++++|+    ++|.+||.++ |||..+|++||+.+++..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            45678999999999999999997    6899999998 999999999999887664

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=6.6e-10  Score=81.16  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144            6 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus         6 ~~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      ...+...++||+||+++|.+++.+|| .+|..||..|++||..+|..+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            34456778999999999999999999 68999999999999999999986543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.91  E-value=4.3e-10  Score=82.73  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHH---hhCCCCCcccccccccccCC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLIS---KSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA---~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      .+.+.+||+|||+.|++.|++||. +|..|+   .++++||...+.+||.++..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            468899999999999999999996 899999   46799999999999988654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=86.19  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             ccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCcHHHHhhhc-----CCCCHHHHHHHHHHHhhhhcc
Q 022144           48 KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLL-----SGRTDNAIKNHWNSTLKRKCS  114 (302)
Q Consensus        48 kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l-----~gRT~~q~knRw~~~Lkrk~~  114 (302)
                      .=+.++|.++|.+    .+||.||++.|++|+++||.+|..|+..+     ++||..+||+||..+.++.+.
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4577899999976    89999999999999999999999999988     589999999999998887654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.82  E-value=2.7e-09  Score=105.91  Aligned_cols=46  Identities=17%  Similarity=0.364  Sum_probs=42.5

Q ss_pred             CCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           65 RPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      ..||+||..++++++.+||.+|..||+.+..||..||+++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999975433

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.69  E-value=5.2e-09  Score=79.15  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHhhCCCCCcccccccccccCC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G---~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      ...++.||.|||++|.+++.+|+   ++.|.+||..+ |||.++|+.||+.+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45578899999999999999997   45699999998 9999999999987643

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.63  E-value=7.2e-08  Score=73.12  Aligned_cols=50  Identities=14%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           63 EHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ....||.+|+.+|.++++.|+    ++|.+||..|+|||..+|+.||..+++.+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            346899999999999999998    47999999999999999999999886554

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.50  E-value=3.1e-08  Score=72.11  Aligned_cols=48  Identities=23%  Similarity=0.378  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHh-hCCCCCcccccccccccCC
Q 022144           12 KGPWSPEEDEALQRLVQNY--------GPRNWSLISK-SIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~--------G~~nW~~IA~-~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      |.+||+|||+.|.++|.+|        |..-|..+++ .++++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            6789999999999999999        5445999999 7999999999999999875

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.49  E-value=6.1e-08  Score=87.73  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=46.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      .+..++||+||+++|++++.+|| ++|..||+.|++||..||+.+|+++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            46678999999999999999999 689999999999999999999988764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=8.9e-08  Score=72.61  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCcccccccccccCCC
Q 022144           13 GPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p   60 (302)
                      ..||.+||++|.+++..|+.   ++|.+||..|++||..+|+.||..++..
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            57999999999999999964   5699999999999999999999887653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.46  E-value=2.1e-07  Score=67.71  Aligned_cols=47  Identities=23%  Similarity=0.434  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHHHhc--------CCc-HHHHhh-hcCCCCHHHHHHHHHHHhh
Q 022144           64 HRPFTPEEDETILRAHARF--------GNK-WATIAR-LLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~--------Gnk-W~~IA~-~l~gRT~~q~knRw~~~Lk  110 (302)
                      +.+||+|||+.|++.|++|        ||+ |..+++ .++++|-.++++||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 8999999999999987764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.45  E-value=4e-07  Score=85.88  Aligned_cols=101  Identities=16%  Similarity=0.291  Sum_probs=81.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccc-------cccccC--------------------------
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRL-------RWCNQL--------------------------   58 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~-------Rw~n~L--------------------------   58 (302)
                      -+.||..|...++.++.+||..+|..||..|.++|...++.       ||..+-                          
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999998865532       221100                          


Q ss_pred             -----------------CCCCCCCCCChHHHHHHHHHHHhcC----CcHHHHh---h---------hcCCCCHHHHHHHH
Q 022144           59 -----------------SPQVEHRPFTPEEDETILRAHARFG----NKWATIA---R---------LLSGRTDNAIKNHW  105 (302)
Q Consensus        59 -----------------~p~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA---~---------~l~gRT~~q~knRw  105 (302)
                                       .+..+...||+|||+.|+-++.+||    +.|..|.   +         +|..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                             0123456899999999999999999    4799996   2         56789999999999


Q ss_pred             HHHhhhh
Q 022144          106 NSTLKRK  112 (302)
Q Consensus       106 ~~~Lkrk  112 (302)
                      +.+++-.
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=1.5e-06  Score=63.79  Aligned_cols=48  Identities=13%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCCcHHHHhh-hcCCCCHHHHHHHHHH
Q 022144           60 PQVEHRPFTPEEDETILRAHARFGNKWATIAR-LLSGRTDNAIKNHWNS  107 (302)
Q Consensus        60 p~~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~-~l~gRT~~q~knRw~~  107 (302)
                      |.++...||+||..++.+++.+||.+|..|++ .|++||..+|...|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            56778899999999999999999999999999 5999999999998863

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.03  E-value=9.9e-07  Score=66.77  Aligned_cols=43  Identities=26%  Similarity=0.509  Sum_probs=38.9

Q ss_pred             CCCCChHHHHHHHHHHHhcCC----cHHHHhhhcCCCCHHHHHHHHH
Q 022144           64 HRPFTPEEDETILRAHARFGN----KWATIARLLSGRTDNAIKNHWN  106 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~l~gRT~~q~knRw~  106 (302)
                      ...||.||+++|.++.+.|..    +|.+||..|||||..+|+.||.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999985

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.97  E-value=3.4e-05  Score=60.58  Aligned_cols=47  Identities=19%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             CCCChHHHHHHHHHHHhcCC---cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           65 RPFTPEEDETILRAHARFGN---KWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~Gn---kW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      -.||.|||+.||...++-|.   .|+.||+.|.+|+.+||++||+.+++-
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            47999999999999999995   799999999999999999999987653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.96  E-value=9.5e-07  Score=66.86  Aligned_cols=44  Identities=16%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCccccccccc
Q 022144           12 KGPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWC   55 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~   55 (302)
                      ...||.||+++|.+++.+|..   ..|.+||..|+|||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999954   36999999999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=7.2e-06  Score=60.05  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh-hCCCCCccccccccc
Q 022144            7 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWC   55 (302)
Q Consensus         7 ~~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~-~lp~Rt~kqCr~Rw~   55 (302)
                      .+......||+||-+++.+.+.+|| ++|..|++ .|++|+..+|..-|.
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence            4667778999999999999999999 58999999 589999999987664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.90  E-value=2.3e-05  Score=58.57  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=41.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCcHHHHhh-hcCCCCHHHHHHHHH
Q 022144           63 EHRPFTPEEDETILRAHARFGNKWATIAR-LLSGRTDNAIKNHWN  106 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~GnkW~~IA~-~l~gRT~~q~knRw~  106 (302)
                      ....||+||..++.+++.+||.+|..|++ .|++||..+|...|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            34689999999999999999999999999 699999999999987

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.87  E-value=2.1e-05  Score=62.09  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHH
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNST  108 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~  108 (302)
                      ...||+||.+++.++...||.+|..|+..|++||..+|..+|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.07  E-value=2.1e-06  Score=64.02  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHhcCC---cHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           66 PFTPEEDETILRAHARFGN---KWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~Gn---kW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      .||.|||+.|+..+++-|.   .|+.||..| +|+++||++||+.+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            7999999999999999996   799999999 9999999999998764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.77  E-value=4.8e-05  Score=60.05  Aligned_cols=50  Identities=14%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCcHHHHhhhcC-----CCCHHHHHHHHHHHhhhhcc
Q 022144           65 RPFTPEEDETILRAHARFGNKWATIARLLS-----GRTDNAIKNHWNSTLKRKCS  114 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~-----gRT~~q~knRw~~~Lkrk~~  114 (302)
                      ..||.||...|++++++|+-+|.-|+..+.     +||-.++|.||..+.++.+.
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999998764     79999999999999887654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.65  E-value=2.3e-05  Score=77.96  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=43.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccccc
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      .+...+||.||-+++++++.+|| ++|..||..|.+||..||+..|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35678999999999999999999 6899999999999999999988654

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.56  E-value=0.00021  Score=68.91  Aligned_cols=103  Identities=19%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-CCCccccc-------cccccc------C--------------------
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCR-------LRWCNQ------L--------------------   58 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-~Rt~kqCr-------~Rw~n~------L--------------------   58 (302)
                      +.||.-|=..++.++.+||..+...||..|. ++|...++       .||..+      +                    
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999989999999997 88775543       122111      0                    


Q ss_pred             ------------------CC-CCCCCCCChHHHHHHHHHHHhcC----CcHHHHhhh------------cCCCCHHHHHH
Q 022144           59 ------------------SP-QVEHRPFTPEEDETILRAHARFG----NKWATIARL------------LSGRTDNAIKN  103 (302)
Q Consensus        59 ------------------~p-~~kk~~WT~EED~~Ll~lv~~~G----nkW~~IA~~------------l~gRT~~q~kn  103 (302)
                                        .+ +.+...||++||+.||-++.+||    +.|.+|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                              00 11456899999999999999999    569999432            46799999999


Q ss_pred             HHHHHhhhhccC
Q 022144          104 HWNSTLKRKCSS  115 (302)
Q Consensus       104 Rw~~~Lkrk~~~  115 (302)
                      |.+.+++-..+.
T Consensus       284 Rc~tLi~~IeKE  295 (374)
T 2y9y_A          284 RGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999998765443

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.54  E-value=4.4e-05  Score=60.30  Aligned_cols=46  Identities=20%  Similarity=0.370  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC-----CCCCcccccccccccC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSI-----PGRSGKSCRLRWCNQL   58 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l-----p~Rt~kqCr~Rw~n~L   58 (302)
                      ..+||.||++.|.+++++|+.+ |..|+..+     ++||..+++.||..+.
T Consensus        30 ~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999965 99999999     5899999999997643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.45  E-value=6.9e-05  Score=59.08  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccccccc
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWC   55 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~   55 (302)
                      ...||+||.+++.+.+.+|| ++|.+|+..|++||..+|.+-|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence            46799999999999999999 68999999999999999987664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.44  E-value=0.0001  Score=54.99  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHh-hCCCCCccccccccc
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWC   55 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~-~lp~Rt~kqCr~Rw~   55 (302)
                      .....||+||-+++.+.+.+|| .+|..|++ .|++|+..+|..-|.
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4556899999999999999999 58999999 599999999987664

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.43  E-value=0.0006  Score=59.89  Aligned_cols=102  Identities=14%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC--CCCHHHHHhh--CCCCCcccccc-------c-------cc----------------
Q 022144           10 RIKGPWSPEEDEALQRLVQNYG--PRNWSLISKS--IPGRSGKSCRL-------R-------WC----------------   55 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G--~~nW~~IA~~--lp~Rt~kqCr~-------R-------w~----------------   55 (302)
                      -....||..|-..|++++.+||  ...|..|+..  |.+++...+..       +       +.                
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            3456799999999999999999  4679999864  56776642211       0       00                


Q ss_pred             ------------------------------------cc-CC----CCCCCCCCChHHHHHHHHHHHhcC-CcHHHHhh--
Q 022144           56 ------------------------------------NQ-LS----PQVEHRPFTPEEDETILRAHARFG-NKWATIAR--   91 (302)
Q Consensus        56 ------------------------------------n~-L~----p~~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~--   91 (302)
                                                          ++ +.    +......||.+||..|+..+.+|| ++|..|..  
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~  164 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP  164 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence                                                00 00    111123699999999999999999 99999965  


Q ss_pred             h--c----------CCCCHHHHHHHHHHHhhh
Q 022144           92 L--L----------SGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        92 ~--l----------~gRT~~q~knRw~~~Lkr  111 (302)
                      .  |          ..++...|..|...+|+-
T Consensus       165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence            2  1          124567899998877654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.15  E-value=0.00039  Score=53.22  Aligned_cols=49  Identities=14%  Similarity=0.407  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHhcC----------CcHHHHhhhcC----CCCHHHHHHHHHHHhhhh
Q 022144           64 HRPFTPEEDETILRAHARFG----------NKWATIARLLS----GRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G----------nkW~~IA~~l~----gRT~~q~knRw~~~Lkrk  112 (302)
                      ...||.+|-.+||++...+.          ..|..||..|.    .||+.||+++|.++.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            46899999999999997532          25999998763    699999999999877663

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.93  E-value=0.00017  Score=55.34  Aligned_cols=48  Identities=25%  Similarity=0.464  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHh------CCC---CHHHHHhhC----CCCCcccccccccccC
Q 022144           11 IKGPWSPEEDEALQRLVQNY------GPR---NWSLISKSI----PGRSGKSCRLRWCNQL   58 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~------G~~---nW~~IA~~l----p~Rt~kqCr~Rw~n~L   58 (302)
                      ....||.+|-.+|+++...+      +..   .|..||..|    -+||+.||+.+|.|+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35789999999999999764      111   499999987    4799999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.82  E-value=0.00021  Score=53.29  Aligned_cols=46  Identities=13%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCHHHHHhhCCCCCcccccccccccCC
Q 022144           13 GPWSPEEDEALQRLVQNYGP--RNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~--~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      -.||.|||..|+..+++.|+  .-|..||+.| +|++.|+.+||+..++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            36999999999999999986  3599999999 9999999999987653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.59  E-value=0.00068  Score=53.20  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCHHHHHhhCCCCCcccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGP--RNWSLISKSIPGRSGKSCRLRWCN   56 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~--~nW~~IA~~lp~Rt~kqCr~Rw~n   56 (302)
                      --||.|||..|+...++.|+  ..|..||+.|.+|+..|+.+||+.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~   79 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE   79 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence            47999999999999999986  359999999999999999999975

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.79  E-value=0.027  Score=41.39  Aligned_cols=48  Identities=19%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCc---HHHHhhhc--CCCCHHHHHHHHHHHh
Q 022144           62 VEHRPFTPEEDETILRAHARFGNK---WATIARLL--SGRTDNAIKNHWNSTL  109 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~Gnk---W~~IA~~l--~gRT~~q~knRw~~~L  109 (302)
                      ..+-.||+|..+.+++++.++|..   |..|.+.+  +|.|..+|+.|.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999954   78998875  5899999999987653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.21  E-value=0.011  Score=46.42  Aligned_cols=44  Identities=20%  Similarity=0.394  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCC-----CCCccccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIP-----GRSGKSCRLRWCNQ   57 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp-----~Rt~kqCr~Rw~n~   57 (302)
                      ..||.||.+.|.+++++|..+ |--|+....     .||..+.++||..+
T Consensus        31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            579999999999999999965 999998873     68888999998764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.12  E-value=0.066  Score=50.35  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=41.9

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      .+.||..|...++.++.+|| ++|..||..|.|+|...|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999 6899999999999999997766655544

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.55  E-value=0.056  Score=39.68  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=39.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHhhC--CCCCccccccccccc
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRN--WSLISKSI--PGRSGKSCRLRWCNQ   57 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~n--W~~IA~~l--p~Rt~kqCr~Rw~n~   57 (302)
                      ...+-.||+|..+.+.++|++.|...  +..|.+.|  +|.|..++..|.++|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45677899999999999999999543  88998887  677888887665543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.78  E-value=0.16  Score=44.29  Aligned_cols=50  Identities=16%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC---CcHHHHhh--hcCCCCHHHHHHHHHHHhhh
Q 022144           62 VEHRPFTPEEDETILRAHARFG---NKWATIAR--LLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~G---nkW~~IA~--~l~gRT~~q~knRw~~~Lkr  111 (302)
                      -....||..|-..|+.++.+||   .+|..|+.  .|.++|...|+..+..++..
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999   58999987  48899999999877665544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.02  E-value=0.17  Score=46.79  Aligned_cols=28  Identities=39%  Similarity=0.673  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISK   40 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~   40 (302)
                      ..|+.+||..|+..|-+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999999999975

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.21  E-value=2.4  Score=39.05  Aligned_cols=48  Identities=10%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHhcC---CcHHHHhh--hcCCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFG---NKWATIAR--LLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G---nkW~~IA~--~l~gRT~~q~knRw~~~Lkr  111 (302)
                      ++.||+.|-+.|++.+.+||   .+|..|+.  .|+.++...++.-|+.++..
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~   55 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA   55 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            57899999999999999999   58999986  68899999999888766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-23
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-11
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-22
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-22
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-11
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-20
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-06
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-16
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-15
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-15
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-14
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	5e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-12
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-12
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	7e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	5e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-07
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	0.003

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.2 bits (221), Expect = 2e-23
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 12 KGPWSPEEDEALQRLVQNYGPR-----NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRP 66
          K  ++ EEDE +  +V+    R      +  IS  +P  +G S R R+   LS ++E+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 67 FTPEEDETILRAHARFGN 84
             +  + +         
Sbjct: 61 EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 65  RPFTPEEDETILRAHARFGNK------WATIARLLSGRTDNAIKNHWNSTLKRKCSSMSD 118
             FT EEDE IL    +   +      +  I+  +   T N+I++ +   L ++   + +
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYE 61

Query: 119 ESQVDAI 125
             +   +
Sbjct: 62  VDKFGKL 68

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQ YGP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (131), Expect = 9e-11
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 66  PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK 110
           P+T EED+ +++   ++G  +W+ IA+ L GR     +  W++ L 
Sbjct: 5   PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.8 bits (210), Expect = 4e-22
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+  G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 66  PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK 110
            +T EEDE + +   + G + W  IA  L  RTD   ++ W   L 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 81.6 bits (201), Expect = 2e-20
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 14 PWSPEEDEALQRLVQNYGPRNWSLISK----SIPGRSGKSCRLRWCNQL-----SPQVEH 64
          P+S  E EAL   V++ G   W  +      +   R+    + +W   +     +PQ   
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 65 RPFTPEED-ETILRAHARFGNK 85
              P++  + +L AHA +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 65  RPFTPEEDETILRAHARFGNK-WATIARL----LSGRTDNAIKNHWNSTLKRKCSS 115
           RPF+  E E ++ A    G   W  +          RT   +K+ W + +     +
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA 56

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 2e-16
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          +  W  EED+ L+  V+ YG  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 65  RPFTPEEDETILRAHARFGNK-WATIARL--LSGRTDNAIKNHWNSTLK 110
           + +  EED+ +     ++G   W+ I      + RT   +K+ W +  K
Sbjct: 3   QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.5 bits (170), Expect = 2e-16
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 66  PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK 110
            +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++
Sbjct: 3   SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL 58
          K  W+ EED  + +  +      W+ I+K +PGR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 2e-15
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 2  ASTKKDVDRI-KGPWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRW 54
           S +K+  R  + PW+  + + L+  +Q Y       W  I++ +P +S + C  R+
Sbjct: 1  GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 59  SPQVEHRPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHW 105
             +    P+T  + + +  A  ++     + W  IAR +  ++       +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 71
             W+ EE E  ++ +  +  R W+ ISK I  R+    +         +V+        
Sbjct: 2  SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 72 DE 73
          ++
Sbjct: 61 NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 7e-13
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 66  PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC 113
            +T EE E   +  A+FG +W  I++L+  RT   +K++     K K 
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 66  PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111
            ++ +E ET      +    +  IA  L  +T      ++  T K 
Sbjct: 19  MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCN 56
          ++   WS +E E  +     +  +N+ LI+  +  ++   C L +  
Sbjct: 15 QVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 5e-14
 Identities = 9/46 (19%), Positives = 24/46 (52%)

Query: 66  PFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 111
            +T EE    ++A  ++G  +  I+ ++  ++   +KN + +  +R
Sbjct: 7   RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 8e-14
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8  VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCN 56
          + +    W+ EE     + ++ YG  ++  IS  I  +S    +  + N
Sbjct: 1  IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVN 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 6e-14
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP--GRSGKSCRLRWCNQLSP 60
          K  W+ EE E ++  VQ YG  NW+ ISK+ P   R+    + RW      
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 65  RPFTPEEDETILRAHARFGNK-WATIARL--LSGRTDNAIKNHWNSTLKRK 112
           + +T EE E +     ++G   WA I++      RT   IK+ W +  +  
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 14 PWSPEEDEALQRLVQNYG---PRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64
          PWS +E++A +R +  Y    P  W+ +++++ GR+ +  +  +   L   +++
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.4 bits (128), Expect = 2e-10
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 65  RPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLK 110
           RP++ +E++   RA A +     ++WA +AR + GRT   +K H+   ++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 15 WSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCN 56
          W+ +E+ AL   V + G  NW  ++  +  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 67  FTPEEDETILRAHARFGNK-WATIARLLSGRTDNAIKNHWN 106
           +T +E+  +L A    G   W  +A  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 39  SKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK---WATIARLLSG 95
           + ++P  S  +         S   +   +T E D  IL      G +   ++ I++ L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 96  RTDNAIKNHWNSTLKR 111
           +T   + + +   ++ 
Sbjct: 68  KTPVEVSHRFRELMQL 83

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 11 IKGPWSPEEDEALQRLVQNYGPRN--WSLISKSIPGRSGKSCRLRW 54
              W+ E D  +  + Q  G +   +S+IS+ +  ++      R+
Sbjct: 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.4 bits (76), Expect = 0.003
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 18/60 (30%)

Query: 51  RLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLS-----GRTDNAIKNHW 105
           R+ W             T E     L A    G + A   ++L        T   + +H 
Sbjct: 7   RVLW-------------THELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.55
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.5
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.5
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.48
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.47
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.41
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.39
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.35
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.34
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.23
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.2
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.2
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.08
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.97
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.77
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.35
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.29
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.05
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.91
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.48
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.36
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.67
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.37
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.24
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.89
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	94.3
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.45
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.08

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.9e-21  Score=148.84  Aligned_cols=71  Identities=24%  Similarity=0.301  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CHHHHHhhCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhc
Q 022144           12 KGPWSPEEDEALQRLVQNYGPR-----NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARF   82 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~-----nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~   82 (302)
                      |++||+|||++|+++|.+||..     +|.+||+.|+|||++||++||.++|+|.++++.||++||.+|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999865     3999999999999999999999999999999999999999998766544

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.4e-19  Score=125.49  Aligned_cols=52  Identities=58%  Similarity=1.192  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~   61 (302)
                      ++||+||+|||++|+++|++||..+|..||+.|++||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999989999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.5e-18  Score=119.95  Aligned_cols=50  Identities=38%  Similarity=0.887  Sum_probs=48.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~   61 (302)
                      |++||+|||++|+++|.+||..+|.+||..|+|||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.5e-17  Score=114.78  Aligned_cols=47  Identities=64%  Similarity=1.100  Sum_probs=45.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhh
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lk  110 (302)
                      +.+||+|||++|+++|++||++|+.||.+|+|||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-16  Score=112.00  Aligned_cols=50  Identities=28%  Similarity=0.727  Sum_probs=47.1

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           62 VEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      +.+|+||+|||++|+++|++|| ++|..||++|+|||+.||++||+++|+.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999998864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=1.2e-16  Score=122.35  Aligned_cols=73  Identities=22%  Similarity=0.375  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhh----CCCCCcccccccccccC-----CCCCCCCCCChHHHHHHHHHHHhcC
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHRPFTPEEDETILRAHARFG   83 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~----lp~Rt~kqCr~Rw~n~L-----~p~~kk~~WT~EED~~Ll~lv~~~G   83 (302)
                      .+||+|||++|+++|++||.++|..|++.    +++||+.||++||.|+|     .+..+++.|+++|   |+..+.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            37999999999999999999999999975    58999999999999988     5678889999877   344444444


Q ss_pred             CcHHH
Q 022144           84 NKWAT   88 (302)
Q Consensus        84 nkW~~   88 (302)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.3e-15  Score=105.95  Aligned_cols=48  Identities=31%  Similarity=0.585  Sum_probs=45.3

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      |++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.3e-16  Score=109.61  Aligned_cols=53  Identities=32%  Similarity=0.512  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhh--CCCCCcccccccccccCCCCCC
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKS--IPGRSGKSCRLRWCNQLSPQVE   63 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~--lp~Rt~kqCr~Rw~n~L~p~~k   63 (302)
                      +|++||+|||++|+++|++||.++|..|++.  +.+||+.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999899999987  5699999999999999887653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.8e-15  Score=103.13  Aligned_cols=47  Identities=28%  Similarity=0.677  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      |++||+|||++|+++|++||. +|..||..|+|||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            689999999999999999996 69999999999999999999998763

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=102.49  Aligned_cols=51  Identities=25%  Similarity=0.513  Sum_probs=46.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcC-CcHHHHhhh--cCCCCHHHHHHHHHHHhhhhc
Q 022144           63 EHRPFTPEEDETILRAHARFG-NKWATIARL--LSGRTDNAIKNHWNSTLKRKC  113 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~--l~gRT~~q~knRw~~~Lkrk~  113 (302)
                      ++.+||+|||++|+++|++|| ++|..|++.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            468999999999999999999 689999997  569999999999999988765

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=7.7e-15  Score=113.03  Aligned_cols=61  Identities=21%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCCc------HHHHhhhcCCCCHHHHHHHHHHHhhhhccCCCccccccc
Q 022144           64 HRPFTPEEDETILRAHARFGNK------WATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA  124 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~Gnk------W~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~~~~~~~~  124 (302)
                      ++.||+|||++|+++|.+||.+      |..||.+|+|||++||++||+++|...+....+...++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~   67 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGK   67 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhH
Confidence            5799999999999999999964      999999999999999999999999999987665544443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.5e-15  Score=104.61  Aligned_cols=48  Identities=31%  Similarity=0.491  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC--CCCCcccccccccccC
Q 022144           11 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSI--PGRSGKSCRLRWCNQL   58 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l--p~Rt~kqCr~Rw~n~L   58 (302)
                      .|++||+|||++|+++|++||.++|..|++.+  .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999875  5999999999998864

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=100.55  Aligned_cols=48  Identities=23%  Similarity=0.514  Sum_probs=43.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcC-CcHHHHhhhc--CCCCHHHHHHHHHHHhh
Q 022144           63 EHRPFTPEEDETILRAHARFG-NKWATIARLL--SGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~G-nkW~~IA~~l--~gRT~~q~knRw~~~Lk  110 (302)
                      ++++||+|||+.|+++|.+|| ++|..|++.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5999999874  59999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.9e-14  Score=102.83  Aligned_cols=54  Identities=28%  Similarity=0.405  Sum_probs=49.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhhhccCCC
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMS  117 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~~  117 (302)
                      ...||+|||++|++++.+||++|..||.+|++||+.+|++||+.++++......
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~   55 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   55 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            357999999999999999999999999999999999999999999988766543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.8e-15  Score=101.85  Aligned_cols=45  Identities=20%  Similarity=0.513  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144           14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      .||.|||++|+++|++||.+||..||+.|++||+.||+.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999999999999999999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=94.79  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHHH
Q 022144           66 PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNST  108 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~~  108 (302)
                      .||.|||++|++++.+|| ++|..||.+|++||+.||++||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.9e-14  Score=100.03  Aligned_cols=54  Identities=22%  Similarity=0.529  Sum_probs=48.6

Q ss_pred             CCcCCCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhCCCCCcccccccccc
Q 022144            3 STKKDVDRIKGPWSPEEDEALQRLVQNYGPR---NWSLISKSIPGRSGKSCRLRWCN   56 (302)
Q Consensus         3 s~~~~~~~~Kg~WT~EED~~L~~lV~k~G~~---nW~~IA~~lp~Rt~kqCr~Rw~n   56 (302)
                      .....+...+++||+|||++|+++|.+||..   +|.+||..|+|||..||+.||+.
T Consensus         3 ~~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           3 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             CccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3456778899999999999999999999975   49999999999999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.3e-13  Score=95.20  Aligned_cols=50  Identities=14%  Similarity=0.328  Sum_probs=45.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC----cHHHHhhhcCCCCHHHHHHHHHHH
Q 022144           59 SPQVEHRPFTPEEDETILRAHARFGN----KWATIARLLSGRTDNAIKNHWNST  108 (302)
Q Consensus        59 ~p~~kk~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~l~gRT~~q~knRw~~~  108 (302)
                      .+...+++||+|||++|++++.+||.    +|.+||.+|+|||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667789999999999999999994    699999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.9e-14  Score=102.82  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCCCCCCCCCCChH
Q 022144           13 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPE   70 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~E   70 (302)
                      .+||+|||++|+++|.+|| .+|..||.+|++||..||+.||.++|.+..+.+.+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            5799999999999999999 68999999999999999999999998877776665543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=9.9e-13  Score=102.40  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             hCCCCCcccccccccccCCCCCCCCCCChHHHHHHHHHHHhcCCc---HHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           41 SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNK---WATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        41 ~lp~Rt~kqCr~Rw~n~L~p~~kk~~WT~EED~~Ll~lv~~~Gnk---W~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      .+|..+..++..++.+..+.......||.|||++||+.++++|.+   |..|++.|+|||+++|++||+.+++..
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            457778888889998888888889999999999999999999977   999999999999999999999887765

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=1.8e-12  Score=93.71  Aligned_cols=47  Identities=32%  Similarity=0.701  Sum_probs=42.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC----cHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           65 RPFTPEEDETILRAHARFGN----KWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      .+||+|||.+|++++++||.    +|.+||.+|+|||.+||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999994    599999999999999999999876643

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.26  E-value=3.5e-12  Score=97.04  Aligned_cols=51  Identities=24%  Similarity=0.517  Sum_probs=45.8

Q ss_pred             CCCChHHHHHHHHHHHhcC-CcHHHHhhh----cCCCCHHHHHHHHHHHhhhhccC
Q 022144           65 RPFTPEEDETILRAHARFG-NKWATIARL----LSGRTDNAIKNHWNSTLKRKCSS  115 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~G-nkW~~IA~~----l~gRT~~q~knRw~~~Lkrk~~~  115 (302)
                      .+||.|||+.|+++|.+|| ++|..|++.    +++||+.+|++||+++|+.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            4899999999999999999 599999985    68999999999999999876544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.23  E-value=1.2e-12  Score=94.68  Aligned_cols=44  Identities=23%  Similarity=0.629  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHHHhhCCCCCcccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGPRN---WSLISKSIPGRSGKSCRLRWCN   56 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~~n---W~~IA~~lp~Rt~kqCr~Rw~n   56 (302)
                      .+||+|||++|+++|.+||..+   |.+||..|++||..||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999764   9999999999999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.5e-12  Score=90.42  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHhhh
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR  111 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~Lkr  111 (302)
                      ...||+|||++|++++.+||.+|..||.+|+|||..+|+++|+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999876543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.7e-12  Score=91.82  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=44.0

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCcHHHHhhhcCCCCHHHHHHHHHHHh
Q 022144           62 VEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTL  109 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~GnkW~~IA~~l~gRT~~q~knRw~~~L  109 (302)
                      ....+||+|||++|++++.+||.+|..||.+|+|||..||++||....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.6e-11  Score=87.75  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccCC
Q 022144            9 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus         9 ~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      .+.+.+||+|||++|.+++.+|| .+|..||.+|++||..||+.+|.++.+
T Consensus         2 ~k~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           2 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            34567899999999999999999 679999999999999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.5e-11  Score=86.84  Aligned_cols=50  Identities=18%  Similarity=0.340  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCcccccccccccC
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L   58 (302)
                      ......+||+|||++|.+++.+|| .+|..||..|++||..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345667899999999999999999 68999999999999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.2e-09  Score=84.69  Aligned_cols=50  Identities=18%  Similarity=0.331  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHhhCCCCCccccccccccc
Q 022144            8 VDRIKGPWSPEEDEALQRLVQNYGPRN--WSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus         8 ~~~~Kg~WT~EED~~L~~lV~k~G~~n--W~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      ...+...||.|||+.|++.++++|+..  |..|++.|+||++.||+.||+.+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            345677899999999999999999755  99999999999999999999753

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=4.1e-07  Score=63.89  Aligned_cols=43  Identities=14%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             CCCChHHHHHHHHHHHhcCCcHHHHhh-hcCCCCHHHHHHHHHH
Q 022144           65 RPFTPEEDETILRAHARFGNKWATIAR-LLSGRTDNAIKNHWNS  107 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~GnkW~~IA~-~l~gRT~~q~knRw~~  107 (302)
                      ..||+||..++.+++..||.+|..|++ .+++||..+|.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            479999999999999999999999998 5799999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.9e-07  Score=63.32  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             CCCChHHHHHHHHHHHhcC----CcHHHHhhhcCCCCHHHHHHHHHHHhhhh
Q 022144           65 RPFTPEEDETILRAHARFG----NKWATIARLLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        65 ~~WT~EED~~Ll~lv~~~G----nkW~~IA~~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..||.||+.+|.+++.+|.    ++|.+||..| |||..+|..||+.+....
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            4799999999999999995    6799999999 999999999998665443

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.4e-07  Score=63.90  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCHHHHHhhCCCCCccccccccccc
Q 022144           13 GPWSPEEDEALQRLVQNYGP---RNWSLISKSIPGRSGKSCRLRWCNQ   57 (302)
Q Consensus        13 g~WT~EED~~L~~lV~k~G~---~nW~~IA~~lp~Rt~kqCr~Rw~n~   57 (302)
                      +.||.||+.+|.+++.+|..   +.|.+||..| ||+..+|..||+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            47999999999999999953   3599999999 99999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.5e-06  Score=59.74  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhh-CCCCCcccccccccc
Q 022144           14 PWSPEEDEALQRLVQNYGPRNWSLISKS-IPGRSGKSCRLRWCN   56 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~G~~nW~~IA~~-lp~Rt~kqCr~Rw~n   56 (302)
                      .||+||-+++.+++.+|| .+|..|++. +++||..+|...|.+
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            599999999999999999 689999985 699999999987754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00015  Score=48.10  Aligned_cols=45  Identities=22%  Similarity=0.446  Sum_probs=40.0

Q ss_pred             CCCCChHHHHHHHHHHHhcCCcHHHHhhh---cCCCCHHHHHHHHHHH
Q 022144           64 HRPFTPEEDETILRAHARFGNKWATIARL---LSGRTDNAIKNHWNST  108 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~GnkW~~IA~~---l~gRT~~q~knRw~~~  108 (302)
                      +..||.||-.-|...|+++|+.|..|-=.   -+||+..++..+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            35799999999999999999999999754   4799999999999865

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00013  Score=51.21  Aligned_cols=47  Identities=21%  Similarity=0.391  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHhcC--------Cc-HHHHhh-hcCCCCHHHHHHHHHHHhh
Q 022144           64 HRPFTPEEDETILRAHARFG--------NK-WATIAR-LLSGRTDNAIKNHWNSTLK  110 (302)
Q Consensus        64 k~~WT~EED~~Ll~lv~~~G--------nk-W~~IA~-~l~gRT~~q~knRw~~~Lk  110 (302)
                      +.+||.|||+.|++.|+++.        |+ |..+++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999873        22 999996 6899999999999988775

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.36  E-value=0.00025  Score=50.55  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCcH---HHHhhh--cCCCCHHHHHHHHHHHh
Q 022144           63 EHRPFTPEEDETILRAHARFGNKW---ATIARL--LSGRTDNAIKNHWNSTL  109 (302)
Q Consensus        63 kk~~WT~EED~~Ll~lv~~~GnkW---~~IA~~--l~gRT~~q~knRw~~~L  109 (302)
                      .+-.||+||.+.+++++..||.+|   ..|...  ++|+|..+|+.|.+.+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345799999999999999999887   467665  68999999999988764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00013  Score=51.34  Aligned_cols=48  Identities=21%  Similarity=0.338  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------CHHHHHh-hCCCCCcccccccccccCC
Q 022144           12 KGPWSPEEDEALQRLVQNYGPR--------NWSLISK-SIPGRSGKSCRLRWCNQLS   59 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~--------nW~~IA~-~lp~Rt~kqCr~Rw~n~L~   59 (302)
                      |-+||.|||+.|+++|..+...        -|..+++ .++.+|-.+-++||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            5689999999999999998322        2999985 5789999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.67  E-value=0.00045  Score=49.18  Aligned_cols=48  Identities=10%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHhhC--CCCCccccccccccc
Q 022144           10 RIKGPWSPEEDEALQRLVQNYGPRNW--SLISKSI--PGRSGKSCRLRWCNQ   57 (302)
Q Consensus        10 ~~Kg~WT~EED~~L~~lV~k~G~~nW--~~IA~~l--p~Rt~kqCr~Rw~n~   57 (302)
                      ..+-.||+||.+.+..+|+++|.+.|  ..|...|  +++|..||+.+.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567999999999999999996545  5777664  888999998776554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.033  Score=39.74  Aligned_cols=55  Identities=15%  Similarity=0.253  Sum_probs=45.8

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC----cHHHHhhhcCCCCHHHHHHHHHHHhhhhccCC
Q 022144           62 VEHRPFTPEEDETILRAHARFGN----KWATIARLLSGRTDNAIKNHWNSTLKRKCSSM  116 (302)
Q Consensus        62 ~kk~~WT~EED~~Ll~lv~~~Gn----kW~~IA~~l~gRT~~q~knRw~~~Lkrk~~~~  116 (302)
                      ...+.|+++|-++|-.+++.+-.    -|..+|..+..||...|..+|+.-++.+-+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~s~k   64 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQK   64 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCC
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccccccc
Confidence            34468999999999999988763    39999999999999999999998776664443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0056  Score=40.26  Aligned_cols=44  Identities=23%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhC---CCCCcccccccccc
Q 022144           12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSI---PGRSGKSCRLRWCN   56 (302)
Q Consensus        12 Kg~WT~EED~~L~~lV~k~G~~nW~~IA~~l---p~Rt~kqCr~Rw~n   56 (302)
                      |..||.||-.-|...|+++| ..|+.|-=.+   +||+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            35699999999999999999 5699997665   78888877777653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0092  Score=42.70  Aligned_cols=50  Identities=18%  Similarity=0.384  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CCCCHHHHHhhCCCCCcccccccccccCCC
Q 022144           11 IKGPWSPEEDEALQRLVQNY---GPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (302)
Q Consensus        11 ~Kg~WT~EED~~L~~lV~k~---G~~nW~~IA~~lp~Rt~kqCr~Rw~n~L~p   60 (302)
                      .-+.|+.+|=++|-.++...   .++-|..||..+..|+...|...|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            45689999999999999864   556799999999999999999999877654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.30  E-value=0.04  Score=43.73  Aligned_cols=52  Identities=15%  Similarity=0.311  Sum_probs=42.7

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC-Cc---HHHHhh------------hcCCCCHHHHHHHHHHHhhhh
Q 022144           61 QVEHRPFTPEEDETILRAHARFG-NK---WATIAR------------LLSGRTDNAIKNHWNSTLKRK  112 (302)
Q Consensus        61 ~~kk~~WT~EED~~Ll~lv~~~G-nk---W~~IA~------------~l~gRT~~q~knRw~~~Lkrk  112 (302)
                      ..++..+|+|||+-|+-.+.+|| .+   |..|-.            +|..||+..|..|.+.+++-.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            44556799999999999999999 44   999843            236899999999999888754

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.45  E-value=0.15  Score=34.28  Aligned_cols=42  Identities=17%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             CCChHHHHHHHHHHHhcC-CcHHHHhhhcCCCCHHHHHHHHHH
Q 022144           66 PFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNS  107 (302)
Q Consensus        66 ~WT~EED~~Ll~lv~~~G-nkW~~IA~~l~gRT~~q~knRw~~  107 (302)
                      .|+.-|=+.++.+..+|| ++-..||..|.|+|...|+.....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~v   43 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV   43 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            489999999999999999 689999999999999998875543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.08  E-value=0.2  Score=33.54  Aligned_cols=38  Identities=16%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhhCCCCCccccc
Q 022144           14 PWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCR   51 (302)
Q Consensus        14 ~WT~EED~~L~~lV~k~G~~nW~~IA~~lp~Rt~kqCr   51 (302)
                      .|+.-|=..++++.++||-.+-..||..|.++|...++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHH
Confidence            39999999999999999988999999999888887653