Citrus Sinensis ID: 022147

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--

MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI

ccccccccccccEEEccEEEEEEEEcccEEEEEcccccccccccEEEEEEEEccEEEEEEEEEccccEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccccccccEEEEccccccccEEEccccccccccHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEEHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccEEc

cccccccccccEEEEccEEEEEEEccccEEEEccccccEEEEHHHEEEEEEcccEEEEEEEEEcccccEccccccccEEcEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHcccccccEEEEEccccHHHHHHHcHcccccHHHHccccEEEEEccccHHHHHHHHHccccccccHHHHEEEEcccccccEEEEEEccccEEEEEEEEEcccEccccHHHHHHHHcccHHEcEEEEEEEEcccccccccccc

MDQIVQDTLSDRVRVSGRITAMtltgdgrlrwtdghqrsLTLEKQVLGFVVEGSKIRIRAVvdgrdeiccggragsvvrkdfvfeplsedskRLWCEKLRDFIDsfgrpkrlyifvnpfggkkiaskiflddvkplledanIQFTVQETTQQLHAKEIVKVLDlskydgivcvsGDGILVEVVNGlleredwndaikvplgvvpagtgngMIKSLLDLvgepckasNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI

mdqivqdtlsdrvrvsgritamtltgdgrlrwtdghqrsltlekqvlgfvvegskiriravvdgrdeiccggragsvvrkdfvfeplsedskrlwCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI

************VRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMH*****

***********RVRVSGRITAMTLTGDGRL***********LEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID*FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMHA***I

******DTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYMHA****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		302	2.2.26 [Sep-21-2011]
Q9JIA7		617	Sphingosine kinase 2 OS=M	yes	no	0.582	0.285	0.417	6e-34
Q9NRA0		654	Sphingosine kinase 2 OS=H	yes	no	0.596	0.275	0.408	8e-33
Q86KF9		624	Sphingosine kinase A OS=D	yes	no	0.556	0.269	0.436	1e-32
Q91V26		383	Sphingosine kinase 1 OS=R	no	no	0.576	0.454	0.411	2e-31
Q9NYA1		384	Sphingosine kinase 1 OS=H	no	no	0.576	0.453	0.402	3e-31
Q8CI15		382	Sphingosine kinase 1 OS=M	no	no	0.576	0.455	0.4	3e-30
O14159		458	Sphingoid long chain base	yes	no	0.602	0.397	0.358	4e-27
Q8TCT0		537	Ceramide kinase OS=Homo s	no	no	0.619	0.348	0.346	3e-26
Q6B516		760	Sphingosine kinase B OS=D	no	no	0.539	0.214	0.390	2e-24
Q8K4Q7		531	Ceramide kinase OS=Mus mu	no	no	0.619	0.352	0.351	5e-24

>sp\|Q9JIA7\|SPHK2_MOUSE Sphingosine kinase 2 OS=Mus musculus GN=Sphk2 PE=1 SV=2	Back alignment and function desciption

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 118/182 (64%), Gaps = 6/182 (3%)

Query: 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY 167
           R  RL I VNPFGG+ +A +  +D V P++ +A + F + +T +Q HA+E+V+ L LS++
Sbjct: 144 RKPRLLILVNPFGGRGLAWQRCMDHVVPMISEAGLSFNLIQTERQNHARELVQGLSLSEW 203

Query: 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL-----LDLVGEP 222
           +GIV VSGDG+L EV+NGLL+R DW DA+++P+GV+P G+GN +  ++      + V   
Sbjct: 204 EGIVTVSGDGLLYEVLNGLLDRPDWEDAVRMPIGVLPCGSGNALAGAVNHHGGFEQVVGV 263

Query: 223 CKASNAILAVIRGHKRLLDVATI-LQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARI 281
               N  L + RG    LD+ ++ L   +R  S L +AWG ++D+DI SE++R +GSAR 
Sbjct: 264 DLLLNCSLLLCRGGSHPLDLLSVTLASGSRCFSFLSVAWGFLSDVDIHSERFRALGSARF 323

Query: 282 DF 283
             
Sbjct: 324 TL 325

Catalyzes the phosphorylation of sphingosine to form sphingosine 1-phosphate (SPP), a lipid mediator with both intra-and extracellular functions. Also acts on D-erythro-dihydrosphingosine, D-erythro-sphingosine and L-threo-dihydrosphingosine. Binds phosphoinositides.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 9EC: 1

>sp\|Q9NRA0\|SPHK2_HUMAN Sphingosine kinase 2 OS=Homo sapiens GN=SPHK2 PE=1 SV=2	Back alignment and function description

>sp\|Q86KF9\|SPHKA_DICDI Sphingosine kinase A OS=Dictyostelium discoideum GN=sgkA PE=2 SV=2	Back alignment and function description

>sp\|Q91V26\|SPHK1_RAT Sphingosine kinase 1 OS=Rattus norvegicus GN=Sphk1 PE=2 SV=1	Back alignment and function description

>sp\|Q9NYA1\|SPHK1_HUMAN Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1	Back alignment and function description

>sp\|Q8CI15\|SPHK1_MOUSE Sphingosine kinase 1 OS=Mus musculus GN=Sphk1 PE=1 SV=1	Back alignment and function description

>sp\|O14159\|LCB4_SCHPO Sphingoid long chain base kinase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcb4 PE=3 SV=1	Back alignment and function description

>sp\|Q8TCT0\|CERK1_HUMAN Ceramide kinase OS=Homo sapiens GN=CERK PE=1 SV=1	Back alignment and function description

>sp\|Q6B516\|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium discoideum GN=sgkB PE=2 SV=1	Back alignment and function description

>sp\|Q8K4Q7\|CERK1_MOUSE Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		302
255567389		479	Sphingosine kinase, putative [Ricinus co	0.940	0.592	0.728	1e-120
224116224		494	predicted protein [Populus trichocarpa]	0.913	0.558	0.713	1e-113
302144199		506	unnamed protein product [Vitis vinifera]	0.943	0.563	0.689	1e-113
359495505		489	PREDICTED: sphingosine kinase B-like [Vi	0.943	0.582	0.689	1e-112
356555028		488	PREDICTED: sphingosine kinase A-like [Gl	0.940	0.581	0.679	1e-110
356524740		486	PREDICTED: sphingosine kinase A-like [Gl	0.923	0.574	0.670	1e-107
334186773		485	sphingosine kinase 1 [Arabidopsis thalia	0.913	0.569	0.655	1e-103
3080398		1240	putative protein [Arabidopsis thaliana]	0.920	0.224	0.652	1e-103
297804000		1273	D-erythro-sphingosine kinase [Arabidopsi	0.933	0.221	0.630	1e-102
334186771		481	Diacylglycerol kinase family protein [Ar	0.913	0.573	0.65	1e-101

>gi\|255567389\|ref\|XP_002524674.1\| Sphingosine kinase, putative [Ricinus communis] gi\|223536035\|gb\|EEF37693.1\| Sphingosine kinase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/284 (72%), Positives = 242/284 (85%)

Query: 1   MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRA 60
           MD   Q  +SD+V V+G  T +TLT  G LRWTD  QR LT+EK+VLGFV+EGSKIR++ 
Sbjct: 1   MDSSPQPIISDQVIVNGATTLLTLTAGGILRWTDRGQRCLTVEKEVLGFVIEGSKIRVKT 60

Query: 61  VVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG 120
           ++D  D ICC G +G++VRKDFVF+PL+EDS+R+ C +LRD++DS GRPKRL +FVNPFG
Sbjct: 61  IIDNGDGICCAGNSGALVRKDFVFQPLTEDSQRVLCNRLRDYLDSLGRPKRLLVFVNPFG 120

Query: 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180
           GK+ ASKIF D VKPLLEDA++Q T+QET  QLHAKE+   LD+SKYDGIVCVSGDGILV
Sbjct: 121 GKRSASKIFFDTVKPLLEDADVQITLQETKHQLHAKEVTSTLDISKYDGIVCVSGDGILV 180

Query: 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240
           EVVNGLL REDW DAIK+PLG+VPAGT NGM KSLLD VGEPCKASNA+LA+IRGHK  L
Sbjct: 181 EVVNGLLAREDWRDAIKLPLGMVPAGTSNGMAKSLLDSVGEPCKASNAVLAIIRGHKCSL 240

Query: 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFY 284
           DVATILQG+T+F SVLML+WGLVADIDIESEKYRWMGSARIDFY
Sbjct: 241 DVATILQGETKFFSVLMLSWGLVADIDIESEKYRWMGSARIDFY 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224116224\|ref\|XP_002317243.1\| predicted protein [Populus trichocarpa] gi\|222860308\|gb\|EEE97855.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302144199\|emb\|CBI23326.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495505\|ref\|XP_002270943.2\| PREDICTED: sphingosine kinase B-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356555028\|ref\|XP_003545841.1\| PREDICTED: sphingosine kinase A-like [Glycine max]	Back alignment and taxonomy information

>gi\|356524740\|ref\|XP_003530986.1\| PREDICTED: sphingosine kinase A-like [Glycine max]	Back alignment and taxonomy information

>gi\|334186773\|ref\|NP_193885.6\| sphingosine kinase 1 [Arabidopsis thaliana] gi\|22136030\|gb\|AAM91597.1\| putative protein [Arabidopsis thaliana] gi\|30387599\|gb\|AAP31965.1\| At4g21540 [Arabidopsis thaliana] gi\|332659065\|gb\|AEE84465.1\| sphingosine kinase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3080398\|emb\|CAA18718.1\| putative protein [Arabidopsis thaliana] gi\|7268951\|emb\|CAB81261.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297804000\|ref\|XP_002869884.1\| D-erythro-sphingosine kinase [Arabidopsis lyrata subsp. lyrata] gi\|297315720\|gb\|EFH46143.1\| D-erythro-sphingosine kinase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334186771\|ref\|NP_001190787.1\| Diacylglycerol kinase family protein [Arabidopsis thaliana] gi\|325656782\|gb\|ADZ38930.1\| sphingosine kinase 2 [Arabidopsis thaliana] gi\|332659064\|gb\|AEE84464.1\| Diacylglycerol kinase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		302
UNIPROTKB\|I3LK44		653	SPHK2 "Uncharacterized protein	0.586	0.271	0.431	8.6e-37
UNIPROTKB\|I3L807		655	LOC100738292 "Uncharacterized	0.586	0.270	0.431	8.9e-37
UNIPROTKB\|J9P106		674	SPHK2 "Uncharacterized protein	0.572	0.256	0.441	3.2e-35
UNIPROTKB\|E2RR84		765	SPHK2 "Uncharacterized protein	0.572	0.226	0.441	5.2e-35
UNIPROTKB\|E1BJM1		610	SPHK2 "Uncharacterized protein	0.586	0.290	0.431	6.7e-35
UNIPROTKB\|B4DU87		595	SPHK2 "Sphingosine kinase 2" [	0.586	0.297	0.431	9.4e-35
UNIPROTKB\|Q9NRA0		654	SPHK2 "Sphingosine kinase 2" [	0.586	0.270	0.431	1.6e-34
UNIPROTKB\|A0T4C8		761	SPHK2 "Sphingosine kinase-2 va	0.586	0.232	0.431	2.9e-34
MGI\|MGI:1861380		617	Sphk2 "sphingosine kinase 2" [	0.615	0.301	0.418	9.4e-34
RGD\|1307757		616	Sphk2 "sphingosine kinase 2" [	0.572	0.280	0.418	3.4e-33

UNIPROTKB\|I3LK44 SPHK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 385 (140.6 bits), Expect = 8.6e-37, Sum P(2) = 8.6e-37
 Identities = 79/183 (43%), Positives = 121/183 (66%)

Query:   104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163
             D   RP RL + VNPFGG+ +A +   + V P++ +A + F + +T +Q HA+E+V+ L 
Sbjct:   176 DLLPRPPRLLLLVNPFGGRGLAWQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLS 235

Query:   164 LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVG-EP 222
             LS++DGIV VSGDG+L EV+NGLL+R DW +A+K P+G++P G+GN +  ++    G EP
Sbjct:   236 LSEWDGIVTVSGDGLLYEVLNGLLDRPDWEEAVKTPVGILPCGSGNALAGAVNQHGGFEP 295

Query:   223 CKAS----NAILAVIRGHKRLLDVATI-LQGKTRFHSVLMLAWGLVADIDIESEKYRWMG 277
                     N  L + RG  R LD+ ++ L   +R  S L +AWG ++D+DI+SE++R +G
Sbjct:   296 ALGIDLLLNCSLLLCRGGGRPLDLLSVTLASGSRCFSFLSVAWGFISDVDIQSERFRALG 355

Query:   278 SAR 280
             SAR
Sbjct:   356 SAR 358

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

UNIPROTKB\|I3L807 LOC100738292 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P106 SPHK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR84 SPHK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJM1 SPHK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DU87 SPHK2 "Sphingosine kinase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NRA0 SPHK2 "Sphingosine kinase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A0T4C8 SPHK2 "Sphingosine kinase-2 variant" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1861380 Sphk2 "sphingosine kinase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1307757 Sphk2 "sphingosine kinase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.91	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110307	diacylglycerol kinase/D-erythro-sphingosine kinase (EC-2.7.1.91) (494 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.794.1	hypothetical protein (532 aa)	•	•	0.910
	eugene3.00161045	hypothetical protein (786 aa)	•	•	0.901
	gw1.3952.2.1	annotation not avaliable (252 aa)	•		0.899
	fgenesh4_pg.C_LG_X001729	hypothetical protein (291 aa)	•		0.899
	fgenesh4_pg.C_LG_I002447	hypothetical protein (254 aa)	•		0.899
	eugene3.00110197	hypothetical protein (256 aa)	•		0.899
	estExt_fgenesh4_pm.C_LG_V0449	hypothetical protein (257 aa)	•		0.899
	estExt_fgenesh4_pm.C_1660029	hypothetical protein (256 aa)	•		0.899
	estExt_fgenesh4_pg.C_LG_II0572	SubName- Full=Putative uncharacterized protein; (257 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		302
PLN02958		481	PLN02958, PLN02958, diacylglycerol kinase/D-erythr	1e-179
pfam00781		127	pfam00781, DAGK_cat, Diacylglycerol kinase catalyt	2e-30
COG1597		301	COG1597, LCB5, Sphingosine kinase and enzymes rela	2e-27
smart00046		124	smart00046, DAGKc, Diacylglycerol kinase catalytic	4e-14
PLN02204		601	PLN02204, PLN02204, diacylglycerol kinase	8e-11
PRK13337		304	PRK13337, PRK13337, putative lipid kinase; Reviewe	4e-10
TIGR00147		293	TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/Bm	2e-09
PRK13055		334	PRK13055, PRK13055, putative lipid kinase; Reviewe	1e-07
PRK13059		295	PRK13059, PRK13059, putative lipid kinase; Reviewe	8e-07
PLN02204		601	PLN02204, PLN02204, diacylglycerol kinase	7e-06
PRK12361		547	PRK12361, PRK12361, hypothetical protein; Provisio	1e-05
PRK00861		300	PRK00861, PRK00861, putative lipid kinase; Reviewe	4e-04
PRK11914		306	PRK11914, PRK11914, diacylglycerol kinase; Reviewe	0.002

>gnl\|CDD\|215517 PLN02958, PLN02958, diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

 Score =  504 bits (1298), Expect = e-179
 Identities = 208/284 (73%), Positives = 245/284 (86%)

Query: 1   MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRA 60
            +      +SDRV V+G +T +TLT +G+LRWTD  QR LT+EK+VLGFV+EGSKIR++ 
Sbjct: 3   DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKT 62

Query: 61  VVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG 120
           +V+    ICC G AG++ RKDFVFEPLS++S+RLWC+KLRD++DS GRPKRL +FVNPFG
Sbjct: 63  IVEKGGGICCRGSAGALARKDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFG 122

Query: 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180
           GKK ASKIF D VKPLLEDA+IQ T+QET  QLHAKE+V+ +DLSKYDGIVCVSGDGILV
Sbjct: 123 GKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILV 182

Query: 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240
           EVVNGLLEREDW  AIK+P+G+VPAGTGNGM KSLLD VGEPC A+NA+LA+IRGHK  L
Sbjct: 183 EVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSL 242

Query: 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFY 284
           DVATILQG+T+F SVLMLAWGLVADIDIESEKYRWMGSAR+DFY
Sbjct: 243 DVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFY 286

Length = 481

>gnl\|CDD\|216116 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain	Back alignment and domain information

>gnl\|CDD\|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|214487 smart00046, DAGKc, Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>gnl\|CDD\|215126 PLN02204, PLN02204, diacylglycerol kinase	Back alignment and domain information

>gnl\|CDD\|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>gnl\|CDD\|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|215126 PLN02204, PLN02204, diacylglycerol kinase	Back alignment and domain information

>gnl\|CDD\|183473 PRK12361, PRK12361, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|234850 PRK00861, PRK00861, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		302
PLN02958		481	diacylglycerol kinase/D-erythro-sphingosine kinase	100.0
KOG1116		579	consensus Sphingosine kinase, involved in sphingol	100.0
PLN02204		601	diacylglycerol kinase	100.0
KOG1115		516	consensus Ceramide kinase [Lipid transport and met	100.0
PRK11914		306	diacylglycerol kinase; Reviewed	100.0
PRK00861		300	putative lipid kinase; Reviewed	100.0
PRK13337		304	putative lipid kinase; Reviewed	100.0
PRK13055		334	putative lipid kinase; Reviewed	100.0
PRK13059		295	putative lipid kinase; Reviewed	100.0
COG1597		301	LCB5 Sphingosine kinase and enzymes related to euk	100.0
TIGR03702		293	lip_kinase_YegS lipid kinase YegS. Members of this	100.0
PRK13054		300	lipid kinase; Reviewed	100.0
PRK13057		287	putative lipid kinase; Reviewed	100.0
TIGR00147		293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	100.0
PRK12361		547	hypothetical protein; Provisional	99.97
PF00781		130	DAGK_cat: Diacylglycerol kinase catalytic domain;	99.95
KOG4435		535	consensus Predicted lipid kinase [Lipid transport	99.88
smart00046		124	DAGKc Diacylglycerol kinase catalytic domain (pres	99.88
KOG1169		634	consensus Diacylglycerol kinase [Lipid transport a	99.78
KOG0782		1004	consensus Predicted diacylglycerol kinase [Signal	99.61
PRK03708		277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.21
PRK02645		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.04
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	98.82
PRK01231		295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.66
PRK03378		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.54
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	98.37
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.28
PRK02155		291	ppnK NAD(+)/NADH kinase family protein; Provisiona	98.26
KOG1170		1099	consensus Diacylglycerol kinase [Lipid transport a	98.24
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	98.2
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.16
PRK14076		569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	98.15
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.15
PRK04539		296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.1
PLN02935		508	Bifunctional NADH kinase/NAD(+) kinase	98.05
PRK03501		264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.01
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.01
PLN02727		986	NAD kinase	97.9
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.72
PRK01185		271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.68
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	97.59
PLN02929		301	NADH kinase	97.45
PRK02231		272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.06
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	96.69
COG0061		281	nadF NAD kinase [Coenzyme metabolism]	96.51
cd08186		383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	96.23
PF13685		250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	96.2
cd08181		357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	96.15
cd08194		375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	96.14
cd08176		377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	96.05
PF11711		382	Tim54: Inner membrane protein import complex subun	95.95
cd08197		355	DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly	95.79
cd08549		332	G1PDH_related Glycerol-1-phosphate_dehydrogenase a	95.76
KOG4180		395	consensus Predicted kinase [General function predi	95.75
cd08187		382	BDH Butanol dehydrogenase catalyzes the conversion	95.74
PRK10624		382	L-1,2-propanediol oxidoreductase; Provisional	95.74
cd08195		345	DHQS Dehydroquinate synthase (DHQS) catalyzes the	95.65
cd08171		345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	95.6
cd08185		380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	95.55
PRK00843		350	egsA NAD(P)-dependent glycerol-1-phosphate dehydro	95.48
cd08550		349	GlyDH-like Glycerol_dehydrogenase-like. Families o	95.42
TIGR02638		379	lactal_redase lactaldehyde reductase. This clade o	95.33
PRK09860		383	putative alcohol dehydrogenase; Provisional	95.31
cd08173		339	Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro	95.27
PRK00002		358	aroB 3-dehydroquinate synthase; Reviewed	95.25
cd08188		377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	95.18
cd08191		386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	95.0
cd08179		375	NADPH_BDH NADPH-dependent butanol dehydrogenase in	94.97
cd08199		354	EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-	94.95
PRK09423		366	gldA glycerol dehydrogenase; Provisional	94.92
cd08172		347	GlyDH-like1 Glycerol dehydrogenases-like. Glycerol	94.71
cd08170		351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	94.7
PRK10586		362	putative oxidoreductase; Provisional	94.67
cd08174		331	G1PDH-like Glycerol-1-phosphate dehydrogenase-like	94.63
KOG2178		409	consensus Predicted sugar kinase [Carbohydrate tra	94.61
PRK15454		395	ethanol dehydrogenase EutG; Provisional	94.6
cd08178		398	AAD_C C-terminal alcohol dehydrogenase domain of t	94.58
cd08551		370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	94.39
TIGR01357		344	aroB 3-dehydroquinate synthase. This model represe	94.34
cd08169		344	DHQ-like Dehydroquinate synthase-like which includ	94.28
cd08183		374	Fe-ADH2 Iron-containing alcohol dehydrogenases-lik	94.28
cd08193		376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	94.14
cd08192		370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	94.14
COG1454		377	EutG Alcohol dehydrogenase, class IV [Energy produ	94.09
cd07766		332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	94.01
cd08184		347	Fe-ADH3 Iron-containing alcohol dehydrogenases-lik	93.96
cd08175		348	G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c	93.81
cd08182		367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	93.55
cd08180		332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	93.48
cd08190		414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	93.36
cd08189		374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	93.1
PF00465		366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	93.06
PLN02834		433	3-dehydroquinate synthase	92.69
PRK15138		387	aldehyde reductase; Provisional	91.08
PF10254		414	Pacs-1: PACS-1 cytosolic sorting protein; InterPro	90.4
COG0371		360	GldA Glycerol dehydrogenase and related enzymes [E	90.33
cd08177		337	MAR Maleylacetate reductase is involved in many ar	90.19
PRK14021		542	bifunctional shikimate kinase/3-dehydroquinate syn	90.0
PRK13805		862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	89.84
PRK06203		389	aroB 3-dehydroquinate synthase; Reviewed	89.68
TIGR03405		355	Phn_Fe-ADH phosphonate metabolism-associated iron-	89.48
cd08198		369	DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH	89.25
cd06295		275	PBP1_CelR Ligand binding domain of a transcription	88.96
PF00731		150	AIRC: AIR carboxylase; InterPro: IPR000031 Phospho	88.85
PRK06756		148	flavodoxin; Provisional	88.33
cd06167		149	LabA_like LabA_like proteins. A well conserved gro	88.28
cd01536		267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	88.01
PRK06703		151	flavodoxin; Provisional	87.94
PLN02948		577	phosphoribosylaminoimidazole carboxylase	86.93
cd06310		273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	86.67
TIGR02482		301	PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin	85.48
cd06312		271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	85.44
cd01391		269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	85.39
TIGR02483		324	PFK_mixed phosphofructokinase. Members of this fam	85.34
PRK11780		217	isoprenoid biosynthesis protein with amidotransfer	84.73
cd00763		317	Bacterial_PFK Phosphofructokinase, a key regulator	84.59
cd06305		273	PBP1_methylthioribose_binding_like Methylthioribos	84.39
cd01537		264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	84.28
PRK03202		320	6-phosphofructokinase; Provisional	83.82
cd00764		762	Eukaryotic_PFK Phosphofructokinase, a key regulato	83.62
cd06318		282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	83.61
cd06282		266	PBP1_GntR_like_2 Ligand-binding domain of putative	83.52
cd06341		341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	83.45
TIGR00288		160	conserved hypothetical protein TIGR00288. This fam	83.41
PTZ00286		459	6-phospho-1-fructokinase; Provisional	83.3
cd06268		298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	83.24
cd06278		266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	83.2
PRK05282		233	(alpha)-aspartyl dipeptidase; Validated	83.03
PF04392		294	ABC_sub_bind: ABC transporter substrate binding pr	82.86
PRK10653		295	D-ribose transporter subunit RbsB; Provisional	82.0
cd01538		288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	81.93
TIGR01162		156	purE phosphoribosylaminoimidazole carboxylase, Pur	81.21
PRK07308		146	flavodoxin; Validated	80.78
PRK09271		160	flavodoxin; Provisional	80.51
cd06320		275	PBP1_allose_binding Periplasmic allose-binding dom	80.42
cd06300		272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	80.04
PRK04155		287	chaperone protein HchA; Provisional	80.04

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

Probab=100.00  E-value=2.6e-65  Score=504.15  Aligned_cols=296  Identities=71%  Similarity=1.162  Sum_probs=278.0

Q ss_pred             CCccccceeeeeEEEeceeEEEEEccCCeEEEecCCcccccceeeEEEEEEcCceEEEEEeecCCCcccccCCCCceeEe
Q 022147            1 MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRK   80 (302)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~w~~~~~~~~~~~~~vl~~~~~~~~~~i~~~~~~~~~~~c~~~~~~~~~~   80 (302)
                      |+..++++++++|+|||.++.+||+++|+|+|++++++++++++||||+.++|.+++|+++++...+.+|++++++|+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (481)
T PLN02958          3 DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARK   82 (481)
T ss_pred             CcCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceee
Confidence            45667889999999999999999999999999998899999999999999999999999999988889999988899999


Q ss_pred             eEEecCCChHHHHHHHHHHHhhhhccCCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHH
Q 022147           81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK  160 (302)
Q Consensus        81 ~~~~~~~~~~~~~~w~~~l~~~l~~~~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~  160 (302)
                      +++|.+.|.+.++.|+++|+++++..+||||++||+||.||++++.++|.+.++|+|+.++++++++.|++++||.++++
T Consensus        83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~  162 (481)
T PLN02958         83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVR  162 (481)
T ss_pred             eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHH
Confidence            99999999999999999999999988999999999999999999999987789999999999999999999999999999


Q ss_pred             HhhcCCCceEEEEcCCchHHHHHHHHhcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeee
Q 022147          161 VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL  240 (302)
Q Consensus       161 ~~~~~~~d~IVvvGGDGTl~evvngL~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~l  240 (302)
                      +++..+||.||++|||||+|||+|||+.+++|+.+.++|||+||+||||+||++|.+..|+|.++..|+.+|++|+.+++
T Consensus       163 ~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~v  242 (481)
T PLN02958        163 TMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSL  242 (481)
T ss_pred             HhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEE
Confidence            98888899999999999999999999999887777889999999999999999997767899999999999999999999


Q ss_pred             eEEEEecCCeeEEEEEeeeeehhhhhchhhhhhcccCchhHHHHHHHHhhhhcccC
Q 022147          241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYSSLVFTYM  296 (302)
Q Consensus       241 Dv~~v~~~~~~~f~~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~l~~y~  296 (302)
                      |++++++++.++|++++++|||+|+++..++++||||++||.+++++.+.+++.|.
T Consensus       243 Dlg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~  298 (481)
T PLN02958        243 DVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYN  298 (481)
T ss_pred             eEEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcc
Confidence            99999765556776778999999999999999999999999999999998877664

>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN02204 diacylglycerol kinase	Back alignment and domain information

>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK11914 diacylglycerol kinase; Reviewed	Back alignment and domain information

>PRK00861 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13337 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13055 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13059 putative lipid kinase; Reviewed	Back alignment and domain information

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>TIGR03702 lip_kinase_YegS lipid kinase YegS	Back alignment and domain information

>PRK13054 lipid kinase; Reviewed	Back alignment and domain information

>PRK13057 putative lipid kinase; Reviewed	Back alignment and domain information

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]	Back alignment and domain information

>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]	Back alignment and domain information

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02727 NAD kinase	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02929 NADH kinase	Back alignment and domain information

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>COG0061 nadF NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase	Back alignment and domain information

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C	Back alignment and domain information

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)	Back alignment and domain information

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria	Back alignment and domain information

>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol	Back alignment and domain information

>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics	Back alignment and domain information

>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins	Back alignment and domain information

>KOG4180 consensus Predicted kinase [General function prediction only]	Back alignment and domain information

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	Back alignment and domain information

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional	Back alignment and domain information

>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	Back alignment and domain information

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like	Back alignment and domain information

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd08550 GlyDH-like Glycerol_dehydrogenase-like	Back alignment and domain information

>TIGR02638 lactal_redase lactaldehyde reductase	Back alignment and domain information

>PRK09860 putative alcohol dehydrogenase; Provisional	Back alignment and domain information

>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme	Back alignment and domain information

>PRK00002 aroB 3-dehydroquinate synthase; Reviewed	Back alignment and domain information

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate	Back alignment and domain information

>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria	Back alignment and domain information

>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS)	Back alignment and domain information

>PRK09423 gldA glycerol dehydrogenase; Provisional	Back alignment and domain information

>cd08172 GlyDH-like1 Glycerol dehydrogenases-like	Back alignment and domain information

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation	Back alignment and domain information

>PRK10586 putative oxidoreductase; Provisional	Back alignment and domain information

>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like	Back alignment and domain information

>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15454 ethanol dehydrogenase EutG; Provisional	Back alignment and domain information

>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD)	Back alignment and domain information

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like	Back alignment and domain information

>TIGR01357 aroB 3-dehydroquinate synthase	Back alignment and domain information

>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase	Back alignment and domain information

>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	Back alignment and domain information

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway	Back alignment and domain information

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]	Back alignment and domain information

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)	Back alignment and domain information

>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner	Back alignment and domain information

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)	Back alignment and domain information

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	Back alignment and domain information

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism	Back alignment and domain information

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1	Back alignment and domain information

>PLN02834 3-dehydroquinate synthase	Back alignment and domain information

>PRK15138 aldehyde reductase; Provisional	Back alignment and domain information

>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system	Back alignment and domain information

>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]	Back alignment and domain information

>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes	Back alignment and domain information

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional	Back alignment and domain information

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	Back alignment and domain information

>PRK06203 aroB 3-dehydroquinate synthase; Reviewed	Back alignment and domain information

>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase	Back alignment and domain information

>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like	Back alignment and domain information

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE	Back alignment and domain information

>PRK06756 flavodoxin; Provisional	Back alignment and domain information

>cd06167 LabA_like LabA_like proteins	Back alignment and domain information

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>PRK06703 flavodoxin; Provisional	Back alignment and domain information

>PLN02948 phosphoribosylaminoimidazole carboxylase	Back alignment and domain information

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>TIGR02482 PFKA_ATP 6-phosphofructokinase	Back alignment and domain information

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily	Back alignment and domain information

>TIGR02483 PFK_mixed phosphofructokinase	Back alignment and domain information

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional	Back alignment and domain information

>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems	Back alignment and domain information

>PRK03202 6-phosphofructokinase; Provisional	Back alignment and domain information

>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>TIGR00288 conserved hypothetical protein TIGR00288	Back alignment and domain information

>PTZ00286 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily	Back alignment and domain information

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>PRK05282 (alpha)-aspartyl dipeptidase; Validated	Back alignment and domain information

>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems	Back alignment and domain information

>PRK10653 D-ribose transporter subunit RbsB; Provisional	Back alignment and domain information

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein	Back alignment and domain information

>PRK07308 flavodoxin; Validated	Back alignment and domain information

>PRK09271 flavodoxin; Provisional	Back alignment and domain information

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis	Back alignment and domain information

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily	Back alignment and domain information

>PRK04155 chaperone protein HchA; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		302
2qv7_A		337	Crystal Structure Of Diacylglycerol Kinase Dgkb In		1e-05
3s40_A		304	The Crystal Structure Of A Diacylglycerol Kinases F		6e-05
3t5p_A		306	Crystal Structure Of A Putative Diacylglycerol Kina		6e-05

>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex With Adp And Mg Length = 337

Back alignment and structure

Iteration: 1

Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 KR I NP GK+ K L D LE A + + T + A + YD Sbjct: 25 KRARIIYNPTSGKE-QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDV 83 Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229 ++ GDG L EVVNG+ E+ + + LGV+P GT N ++L P A+ Sbjct: 84 LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPXGTVNDFGRALHI----PNDIXGAL 134 Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 261 +I GH +D+ GK + LA G Sbjct: 135 DVIIEGHSTKVDI-----GKXNNRYFINLAAG 161

PyMOL of 2qv7

>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From Bacillus Anthracis Str. Sterne Length = 304

Back alignment and structure

>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From Bacillus Anthracis Str. Sterne Length = 306

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		302
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	2e-28
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	9e-28
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	6e-25

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A Length = 304	Back alignment and structure

 Score =  109 bits (275), Expect = 2e-28
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 17/178 (9%)

Query: 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164
           +  + +++ + VNP  G+       L  + P L  A     +  T +Q  A +  +    
Sbjct: 4   TKTKFEKVLLIVNPKAGQGDLHTN-LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA- 61

Query: 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK 224
           SK D I+   GDG + E  NGL   E     I+  L ++P GT N   ++L    G P  
Sbjct: 62  SKVDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIPGGTCNDFSRTL----GVPQN 112

Query: 225 ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSAR 280
            + A   + + H + +DVA        F  +     GLV+++  +I++E+   +G   
Sbjct: 113 IAEAAKLITKEHVKPVDVAKA--NGQHF--LNFWGIGLVSEVSNNIDAEEKAKLGKIG 166

PyMOL of 3s40

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Length = 337	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Length = 332	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		302
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	100.0
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	100.0
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	99.97
2an1_A		292	Putative kinase; structural genomics, PSI, protein	99.31
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	99.23
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	99.11
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	99.08
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	98.5
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	97.84
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	97.52
1o2d_A		371	Alcohol dehydrogenase, iron-containing; TM0920, st	95.61
1sg6_A		393	Pentafunctional AROM polypeptide; shikimate pathwa	95.2
3ce9_A		354	Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin	95.03
1jq5_A		370	Glycerol dehydrogenase; oxidoreductase, NAD, glyce	94.64
3bfj_A		387	1,3-propanediol oxidoreductase; opportunistic path	94.6
3ox4_A		383	Alcohol dehydrogenase 2; iron, NAD, oxidoreductase	94.37
3uhj_A		387	Probable glycerol dehydrogenase; structural genomi	94.33
1vlj_A		407	NADH-dependent butanol dehydrogenase; TM0820, stru	94.24
3okf_A		390	3-dehydroquinate synthase; structural genomics, ce	94.12
1rrm_A		386	Lactaldehyde reductase; structural genomics, dehyd	93.08
1oj7_A		408	Hypothetical oxidoreductase YQHD; structural genom	93.07
3hl0_A		353	Maleylacetate reductase; structur genomics, PSI-2,	92.85
1ta9_A		450	Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa	92.74
3jzd_A		358	Iron-containing alcohol dehydrogenase; YP_298327.1	92.35
3qbe_A		368	3-dehydroquinate synthase; shikimate pathway, myco	92.0
1xah_A		354	Sadhqs, 3-dehydroquinate synthase; shikimate pathw	90.39
1kq3_A		376	Glycerol dehydrogenase; structural genomics, joint	90.34
2gru_A		368	2-deoxy-scyllo-inosose synthase; aminoglycoside, 2	90.04
3iv7_A		364	Alcohol dehydrogenase IV; NP_602249.1, iron-contai	89.57
3clh_A		343	3-dehydroquinate synthase; shikimate pathway, arom	88.02
3f6r_A		148	Flavodoxin; FMN binding, oxidized, electron transp	86.16
3jy6_A		276	Transcriptional regulator, LACI family; NYSGXRC, P	86.1
2fep_A		289	Catabolite control protein A; CCPA, transcriptiona	85.94
3l49_A		291	ABC sugar (ribose) transporter, periplasmic substr	85.93
4grd_A		173	N5-CAIR mutase, phosphoribosylaminoimidazole carbo	85.78
2fqx_A		318	Membrane lipoprotein TMPC; ABC transport system, l	85.76
3l6u_A		293	ABC-type sugar transport system periplasmic compo;	85.48
3m9w_A		313	D-xylose-binding periplasmic protein; xylose bindi	85.46
3o74_A		272	Fructose transport system repressor FRUR; dual tra	85.45
2fvy_A		309	D-galactose-binding periplasmic protein; periplasm	85.38
3gbv_A		304	Putative LACI-family transcriptional regulator; NY	84.99
2iks_A		293	DNA-binding transcriptional dual regulator; escher	84.76
1pfk_A		320	Phosphofructokinase; transferase(phosphotransferas	84.67
3brq_A		296	HTH-type transcriptional regulator ASCG; transcrip	84.57
3c3k_A		285	Alanine racemase; structural genomics, protein str	84.51
3d8u_A		275	PURR transcriptional regulator; APC91343.1, vibrio	84.48
2rgy_A		290	Transcriptional regulator, LACI family; 11011J, NY	84.17
3rf7_A		375	Iron-containing alcohol dehydrogenase; structural	84.12
3n7t_A		247	Macrophage binding protein; seattle structural gen	83.59
3qk7_A		294	Transcriptional regulators; structural genomics, N	83.37
3egc_A		291	Putative ribose operon repressor; structural genom	83.36
8abp_A		306	L-arabinose-binding protein; binding proteins; HET	83.28
3h75_A		350	Periplasmic sugar-binding domain protein; protein	82.96
3dbi_A		338	Sugar-binding transcriptional regulator, LACI FAM;	82.31
1dbq_A		289	Purine repressor; transcription regulation, DNA-bi	82.05
3ors_A		163	N5-carboxyaminoimidazole ribonucleotide mutase; is	82.03
2x7x_A		325	Sensor protein; transferase, sensor histidine kina	82.03
1zxx_A		319	6-phosphofructokinase; allosteric regulation, lact	82.0
3k9c_A		289	Transcriptional regulator, LACI family protein; PS	81.87
3tb6_A		298	Arabinose metabolism transcriptional repressor; tr	81.75
2fn9_A		290	Ribose ABC transporter, periplasmic ribose-bindin;	81.33
3clk_A		290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	80.97
1ujn_A		348	Dehydroquinate synthase; riken structu genomics/pr	80.83
3kjx_A		344	Transcriptional regulator, LACI family; LACL famil	80.73
3lft_A		295	Uncharacterized protein; ABC, ATPase, cassette, L-	80.55
3o1i_D		304	Periplasmic protein TORT; ligand free, two compone	80.41
1pyo_A		167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	80.36
3k4h_A		292	Putative transcriptional regulator; structural gen	80.35
3g1w_A		305	Sugar ABC transporter; sugar-binding protein, baci	80.14
3bil_A		348	Probable LACI-family transcriptional regulator; st	80.09

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A	Back alignment and structure

Probab=100.00  E-value=4.9e-36  Score=279.10  Aligned_cols=178  Identities=24%  Similarity=0.320  Sum_probs=140.6

Q ss_pred             CCCcEEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHH
Q 022147          107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL  186 (302)
Q Consensus       107 ~r~~r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL  186 (302)
                      ..++|++||+||.||++++.+.| +++++.|++++++++++.|++++|+.++++++. .++|.||++|||||+|||+|+|
T Consensus         6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l   83 (304)
T 3s40_A            6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL   83 (304)
T ss_dssp             CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence            45789999999999999998888 689999999999999999999999999999986 4899999999999999999999


Q ss_pred             hcCccccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhh
Q 022147          187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI  266 (302)
Q Consensus       187 ~~~~~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv  266 (302)
                      +.++     .++|||+||+||+|+||++|    |+|.++.+|+..|++|+.+++|++.+++   ++|. +++++||+|++
T Consensus        84 ~~~~-----~~~~l~iiP~Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~~---~~F~-~~~~~G~da~v  150 (304)
T 3s40_A           84 APLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKANG---QHFL-NFWGIGLVSEV  150 (304)
T ss_dssp             TTCS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEETT---EEES-SEEEEC-----
T ss_pred             hhCC-----CCCcEEEecCCcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEECC---EEEE-EEEeehHHHHH
Confidence            9853     37999999999999999999    8898999999999999999999999963   6776 47999999999


Q ss_pred             chhh--hhhcccCchhHHHHHHHHhhhhcccCcccccC
Q 022147          267 DIES--EKYRWMGSARIDFYVCSYSSLVFTYMHAQTHI  302 (302)
Q Consensus       267 ~~~s--ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~~  302 (302)
                      ..+.  +.++++|+++|.+++++.   +++|+|+.++|
T Consensus       151 ~~~~~~~~k~~~G~~~Y~~~~l~~---l~~~~~~~~~i  185 (304)
T 3s40_A          151 SNNIDAEEKAKLGKIGYYLSTIRT---VKNAETFPVKI  185 (304)
T ss_dssp             -------------CHHHHTTTC---------CCEEEEE
T ss_pred             HHhcCHHHhhcCCchHHHHHHHHH---HhhcCCceEEE
Confidence            8874  356789999998888665   55677776543

PyMOL of 3s40

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*	Back alignment and structure

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}	Back alignment and structure

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*	Back alignment and structure

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}	Back alignment and structure

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*	Back alignment and structure

>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*	Back alignment and structure

>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*	Back alignment and structure

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}	Back alignment and structure

>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*	Back alignment and structure

>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}	Back alignment and structure

>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2	Back alignment and structure

>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}	Back alignment and structure

>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*	Back alignment and structure

>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2	Back alignment and structure

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}	Back alignment and structure

>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}	Back alignment and structure

>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}	Back alignment and structure

>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A	Back alignment and structure

>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*	Back alignment and structure

>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2	Back alignment and structure

>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*	Back alignment and structure

>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}	Back alignment and structure

>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}	Back alignment and structure

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*	Back alignment and structure

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}	Back alignment and structure

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*	Back alignment and structure

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}	Back alignment and structure

>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}	Back alignment and structure

>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*	Back alignment and structure

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}	Back alignment and structure

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*	Back alignment and structure

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*	Back alignment and structure

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*	Back alignment and structure

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}	Back alignment and structure

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}	Back alignment and structure

>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A	Back alignment and structure

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}	Back alignment and structure

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}	Back alignment and structure

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}	Back alignment and structure

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}	Back alignment and structure

>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}	Back alignment and structure

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0	Back alignment and structure

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}	Back alignment and structure

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}	Back alignment and structure

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A	Back alignment and structure

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}	Back alignment and structure

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}	Back alignment and structure

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A	Back alignment and structure

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}	Back alignment and structure

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}	Back alignment and structure

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}	Back alignment and structure

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*	Back alignment and structure

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}	Back alignment and structure

>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1	Back alignment and structure

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}	Back alignment and structure

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}	Back alignment and structure

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C	Back alignment and structure

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A	Back alignment and structure

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}	Back alignment and structure

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}	Back alignment and structure

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		302
d2qv7a1		312	e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Sta	5e-21
d2bona1		295	e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia	3e-17

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Length = 312	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

 Score = 88.9 bits (219), Expect = 5e-21
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
           KR  I  NP  GK+   +  L D    LE A  + +   T +   A    +      YD 
Sbjct: 3   KRARIIYNPTSGKEQFKRE-LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDV 61

Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229
           ++   GDG L EVVNG+ E+ +     +  LGV+P GT N   ++    +  P     A+
Sbjct: 62  LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPMGTVNDFGRA----LHIPNDIMGAL 112

Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYVCSYS 289
             +I GH   +D+          + + + A G +  +  E+            +Y+  + 
Sbjct: 113 DVIIEGHSTKVDI----GKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFE 168

Query: 290 SL 291
            L
Sbjct: 169 ML 170

PyMOL of d2qv7a1

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Length = 295	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		302
d2bona1		295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	100.0
d2qv7a1		312	Diacylglycerol kinase DgkB {Staphylococcus aureus	100.0
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	98.43
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	97.21
d1o2da_		359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	96.29
d1vlja_		398	NADH-dependent butanol dehydrogenase A (TM0820) {T	95.87
d1kq3a_		364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	94.92
d1jq5a_		366	Glycerol dehydrogenase {Bacillus stearothermophilu	94.63
d1rrma_		385	Lactaldehyde reductase FucO {Escherichia coli [Tax	90.29
d1u11a_		159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	90.23
d1qcza_		163	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	89.82
d1edza2		146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	88.88
d1o4va_		169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	85.9
d1sg6a_		389	Dehydroquinate synthase, DHQS {Aspergillus nidulan	85.84
d1qvwa_		236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	85.77
d1vhqa_		217	Putative sigma cross-reacting protein 27A (SCRP-27	84.06
d1pfka_		320	ATP-dependent phosphofructokinase {Escherichia col	83.2
d1p80a1		156	Catalase, C-terminal domain {Escherichia coli, HPI	82.61
d1dbqa_		282	Purine repressor (PurR), C-terminal domain {Escher	81.14
d7reqa2		168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	80.7
d1fyea_		229	Aspartyl dipeptidase PepE {Salmonella typhimurium	80.44
d1xmpa_		155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	80.13

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-35  Score=271.29  Aligned_cols=174  Identities=20%  Similarity=0.210  Sum_probs=145.0

Q ss_pred             EEEEEEcCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcCCCceEEEEcCCchHHHHHHHHhcCc
Q 022147          111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE  190 (302)
Q Consensus       111 r~~vivNP~sG~~~a~~~~~~~v~~~L~~ag~~~~v~~T~~~~~a~el~~~~~~~~~d~IVvvGGDGTl~evvngL~~~~  190 (302)
                      |.+||+||+||.+++   + +++.++|+++|+++++..|++++||.++++++...+||.||++|||||+|||+|+|++++
T Consensus         2 ~~l~i~N~~s~~~~~---~-~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~   77 (295)
T d2bona1           2 ASLLILNGKSTDNLP---L-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCE   77 (295)
T ss_dssp             CEEEEECSSSTTCHH---H-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCchH---H-HHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhcc
Confidence            578999999997654   3 478899999999999999999999999999998889999999999999999999999874


Q ss_pred             cccccCCccEEEecCCChhhHHHhhhhccCCCccHHHHHHHHHhCCeeeeeEEEEecCCeeEEEEEeeeeehhhhhchhh
Q 022147          191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES  270 (302)
Q Consensus       191 ~~~~~~~~plgiIP~GTgN~~A~sL~~~~g~~~~~~~a~~~I~~g~~~~lDv~~v~~~~~~~f~~~~~~~G~~adv~~~s  270 (302)
                      ..   ..+|||+||+||||+||+++    |+|.++.+|+..+.+|+++++|++.+++  +++|. +++++|++|++..+.
T Consensus        78 ~~---~~p~lgilP~GTgN~~Ar~l----g~~~~~~~a~~~i~~g~~~~id~~~v~~--~~~f~-~~~~~G~~a~v~~~~  147 (295)
T d2bona1          78 GD---DIPALGILPLGTANDFATSV----GIPEALDKALKLAIAGDAIAIDMAQVNK--QTCFI-NMATGGFGTRITTET  147 (295)
T ss_dssp             SS---CCCEEEEEECSSSCHHHHHT----TCCSSHHHHHHHHHHSEEEEEEEEEETT--SCEES-SEEEEEEEEEC----
T ss_pred             CC---CCceEEEEECCcccchHHHc----CCCcchhhhhhhhcccceEEeeeeeeec--ceeee-eeeeecccHHHHHHH
Confidence            32   25789999999999999999    7888999999999999999999999963  46776 479999999998764


Q ss_pred             --hhhcccCchhHHHHHHHHhhhhcccCccccc
Q 022147          271 --EKYRWMGSARIDFYVCSYSSLVFTYMHAQTH  301 (302)
Q Consensus       271 --ek~R~~G~~ry~~~~l~~l~~l~~y~~~~~~  301 (302)
                        +.++++|+++|.+.+++   .+++|+|+.++
T Consensus       148 ~~~~~~~~G~~~y~~~~~~---~l~~~~~~~~~  177 (295)
T d2bona1         148 PEKLKAALGSVSYIIHGLM---RMDTLQPDRCE  177 (295)
T ss_dssp             ------CCHHHHHHHHHTS---CEEEEECEEEE
T ss_pred             HHHhhccccchhhhhhhhh---hhhccCceeEE
Confidence              35578999999877654   45667777654

PyMOL of d2bona1

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}	Back information, alignment and structure

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}	Back information, alignment and structure

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}	Back information, alignment and structure

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}	Back information, alignment and structure

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure