Citrus Sinensis ID: 022156

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--

MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

cccccccccEEEEccHHHHHHHHHHHccccccccccccEEccccccccccccccccccEEcccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccEEEEEcccHHHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEccc

EEcccccccEEEEcccHHHHHHHHHHHHcccccccccccccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc

mllpmeigdytdffssmhhakncgtifrgpanavpanwfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsNFKYLYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp

MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscvVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp

MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

******IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		302	2.2.26 [Sep-21-2011]
A5PKH3		419	Fumarylacetoacetase OS=Bo	yes	no	0.993	0.715	0.624	1e-115
P16930		419	Fumarylacetoacetase OS=Ho	yes	no	0.993	0.715	0.617	1e-112
P25093		419	Fumarylacetoacetase OS=Ra	yes	no	0.993	0.715	0.607	1e-111
P35505		419	Fumarylacetoacetase OS=Mu	yes	no	0.993	0.715	0.601	1e-110
Q1ZXQ1		427	Fumarylacetoacetase OS=Di	yes	no	0.993	0.702	0.580	1e-104
Q00770		431	Fumarylacetoacetase OS=Em	yes	no	0.976	0.684	0.562	7e-89
O06724		301	Uncharacterized protein Y	yes	no	0.417	0.418	0.269	9e-06
Q59050		237	Uncharacterized protein M	yes	no	0.274	0.350	0.279	5e-05
O28058		250	Uncharacterized protein A	no	no	0.394	0.476	0.293	0.0002
O58377		230	Uncharacterized protein P	yes	no	0.586	0.769	0.244	0.0002

>sp\|A5PKH3\|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1	Back alignment and function desciption

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/301 (62%), Positives = 233/301 (77%), Gaps = 1/301 (0%)

Query: 1   MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
           M LP  IGDYTDF+SS HHA N G +FRG  NA+  NW HLP+ YHGRASSVV+SGT I 
Sbjct: 115 MYLPATIGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIR 174

Query: 61  RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
           RP GQ  P  + PP +G  + LDFELEMA  VGPGN+LG+PI +++A +HIFG++LMNDW
Sbjct: 175 RPLGQMRPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDW 234

Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
           SARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +P+QDP+PLPYL       
Sbjct: 235 SARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYT 294

Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
           +DI+L V +K  G   +  + RSNFKY+YWT+ QQL HH++NGCNL+ GDLL +GTISGP
Sbjct: 295 FDINLSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGP 354

Query: 241 EPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 299
           EPES GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GFG C+GK++P
Sbjct: 355 EPESFGCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGFGQCAGKVLP 414

Query: 300 S 300
           +
Sbjct: 415 A 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2

>sp\|P16930\|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	Back alignment and function description

>sp\|P25093\|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1	Back alignment and function description

>sp\|P35505\|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2	Back alignment and function description

>sp\|Q1ZXQ1\|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1	Back alignment and function description

>sp\|Q00770\|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3	Back alignment and function description

>sp\|O06724\|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1	Back alignment and function description

>sp\|Q59050\|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1	Back alignment and function description

>sp\|O28058\|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1	Back alignment and function description

>sp\|O58377\|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		302
255559084		421	fumarylacetoacetate hydrolase, putative	0.993	0.712	0.876	1e-155
224086373		419	predicted protein [Populus trichocarpa]	0.993	0.715	0.866	1e-154
359495556		419	PREDICTED: fumarylacetoacetase-like [Vit	0.996	0.718	0.854	1e-153
147771009		419	hypothetical protein VITISV_033628 [Viti	0.996	0.718	0.854	1e-153
297741813		8769	unnamed protein product [Vitis vinifera]	0.996	0.034	0.854	1e-153
22329501		421	fumarylacetoacetase [Arabidopsis thalian	1.0	0.717	0.824	1e-150
297844060		421	hypothetical protein ARALYDRAFT_471353 [	1.0	0.717	0.824	1e-149
449434018		430	PREDICTED: fumarylacetoacetase-like [Cuc	0.996	0.7	0.807	1e-145
357447871		421	Fumarylacetoacetase [Medicago truncatula	1.0	0.717	0.788	1e-144
388508774		421	unknown [Lotus japonicus]	1.0	0.717	0.791	1e-142

>gi\|255559084\|ref\|XP_002520564.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi\|223540224\|gb\|EEF41797.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/300 (87%), Positives = 280/300 (93%)

Query: 1   MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
           M+LP+ IGDYTDFFSSMHHAKNCGTIFRGP N +PANWFHLPIAYHGRASSVV+SGT IV
Sbjct: 119 MVLPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANWFHLPIAYHGRASSVVVSGTGIV 178

Query: 61  RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
           RPRGQ  P+GNSP  FGPSQKLDFELEMAAVVGPGNELGKP+DVNEA DH+FG++LMNDW
Sbjct: 179 RPRGQGHPAGNSPLYFGPSQKLDFELEMAAVVGPGNELGKPVDVNEAGDHLFGLVLMNDW 238

Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
           SARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACD+PKQDP PLPYLAEKISKN
Sbjct: 239 SARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAPKQDPHPLPYLAEKISKN 298

Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
           YDISLEVQIK AGKED+CVVTRSNFK+LYWTLTQQLAHHTINGCNLR GDLLGTGTISGP
Sbjct: 299 YDISLEVQIKAAGKEDACVVTRSNFKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 358

Query: 241 EPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 300
           EPES GCLLELTWNGQKPLSL+G  RKFLEDGDEV F+G  KG+GY VGFGTC GKI+PS
Sbjct: 359 EPESYGCLLELTWNGQKPLSLNGTERKFLEDGDEVIFSGCSKGDGYNVGFGTCFGKILPS 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224086373\|ref\|XP_002307870.1\| predicted protein [Populus trichocarpa] gi\|118481189\|gb\|ABK92546.1\| unknown [Populus trichocarpa] gi\|222853846\|gb\|EEE91393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495556\|ref\|XP_003635021.1\| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi\|297741817\|emb\|CBI33122.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147771009\|emb\|CAN77935.1\| hypothetical protein VITISV_033628 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297741813\|emb\|CBI33118.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|22329501\|ref\|NP_172669.2\| fumarylacetoacetase [Arabidopsis thaliana] gi\|20334820\|gb\|AAM16166.1\| At1g12050/F12F1_8 [Arabidopsis thaliana] gi\|332190709\|gb\|AEE28830.1\| fumarylacetoacetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297844060\|ref\|XP_002889911.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi\|297335753\|gb\|EFH66170.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449434018\|ref\|XP_004134793.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi\|449516307\|ref\|XP_004165188.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357447871\|ref\|XP_003594211.1\| Fumarylacetoacetase [Medicago truncatula] gi\|87241152\|gb\|ABD33010.1\| Fumarylacetoacetase [Medicago truncatula] gi\|355483259\|gb\|AES64462.1\| Fumarylacetoacetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388508774\|gb\|AFK42453.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		302
TAIR\|locus:2008845		421	FAH "AT1G12050" [Arabidopsis t	1.0	0.717	0.794	9.5e-137
UNIPROTKB\|A5PKH3		419	FAH "Fumarylacetoacetase" [Bos	0.993	0.715	0.611	2.5e-104
UNIPROTKB\|F1MYZ7		419	FAH "Fumarylacetoacetase" [Bos	0.993	0.715	0.611	2.5e-104
UNIPROTKB\|P16930		419	FAH "Fumarylacetoacetase" [Hom	0.993	0.715	0.604	1.6e-102
UNIPROTKB\|Q53XA7		349	DKFZp686F13224 "Fumarylacetoac	0.993	0.859	0.604	1.6e-102
UNIPROTKB\|F1RIF3		419	FAH "Uncharacterized protein"	0.993	0.715	0.611	4.2e-102
UNIPROTKB\|F1NYW8		421	FAH "Uncharacterized protein"	0.993	0.712	0.614	1.4e-101
RGD\|61932		419	Fah "fumarylacetoacetate hydro	0.993	0.715	0.591	3.4e-100
MGI\|MGI:95482		419	Fah "fumarylacetoacetate hydro	0.993	0.715	0.588	2.4e-99
UNIPROTKB\|E2RS63		418	FAH "Uncharacterized protein"	0.996	0.720	0.590	1.3e-98

TAIR\|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 240/302 (79%), Positives = 268/302 (88%)

Query:     1 MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
             M++PM IGDYTDFF+SMHHAKNCG +FRGP NA+  NWF LPIAYHGRASS+VISGTDI+
Sbjct:   120 MIVPMVIGDYTDFFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDII 179

Query:    61 RPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
             RPRGQ              +KLDFELEMAAVVGPGNELGKPIDVN AADHIFG++LMNDW
Sbjct:   180 RPRGQGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDW 239

Query:   121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
             SARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPF C +PKQDP PLPYLAEK S N
Sbjct:   240 SARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVN 299

Query:   181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
             YDISLEVQ+KP+G++DSCV+T+SNF+ LYWT+TQQLAHHT+NGCNLR GDLLGTGTISGP
Sbjct:   300 YDISLEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGP 359

Query:   241 EPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 300
             EP+S GCLLELTWNGQKPLSL+G T+ FLEDGD+VTF+G CKG+GY VGFGTC+GKIVPS
Sbjct:   360 EPDSYGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGFGTCTGKIVPS 419

Query:   301 TP 302
              P
Sbjct:   420 PP 421

GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA

GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

UNIPROTKB\|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53XA7 DKFZp686F13224 "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5PKH3	FAAA_BOVIN	3, ., 7, ., 1, ., 2	0.6245	0.9933	0.7159	yes	no
P35505	FAAA_MOUSE	3, ., 7, ., 1, ., 2	0.6013	0.9933	0.7159	yes	no
Q1ZXQ1	FAAA_DICDI	3, ., 7, ., 1, ., 2	0.5803	0.9933	0.7025	yes	no
P25093	FAAA_RAT	3, ., 7, ., 1, ., 2	0.6079	0.9933	0.7159	yes	no
P16930	FAAA_HUMAN	3, ., 7, ., 1, ., 2	0.6179	0.9933	0.7159	yes	no
Q00770	FAAA_EMENI	3, ., 7, ., 1, ., 2	0.5625	0.9768	0.6844	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.7.1.2	0.914
3rd Layer	3.7.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		302
PLN02856		424	PLN02856, PLN02856, fumarylacetoacetase	0.0
TIGR01266		415	TIGR01266, fum_ac_acetase, fumarylacetoacetase	1e-165
pfam01557		207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	4e-36
COG0179		266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	1e-33
TIGR02303		245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	0.004

>gnl\|CDD\|215461 PLN02856, PLN02856, fumarylacetoacetase	Back alignment and domain information

 Score =  599 bits (1547), Expect = 0.0
 Identities = 234/304 (76%), Positives = 255/304 (83%), Gaps = 2/304 (0%)

Query: 1   MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
           MLLP  IGDYTDFFSS  HA N GT+FRGP NA+  NW HLPI YHGRASSVV SGTDI 
Sbjct: 121 MLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIR 180

Query: 61  RPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 119
           RPRGQ  P  G+S P FGPS KLDFELEMAA VGPGNELGKPI VNEA DHIFG++LMND
Sbjct: 181 RPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMND 240

Query: 120 WSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISK 179
           WSARDIQ WEYVPLGPFLGKSF TT+SPWIVTLDALEPF CD+P QDP PLPYLAEK  K
Sbjct: 241 WSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRK 300

Query: 180 NYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG 239
           +YDISLEV IKPAG+  + VV RSNFK+LYWTL QQLAHHT+NGCNLR GDLLG+GTISG
Sbjct: 301 SYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISG 360

Query: 240 PEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 298
           PEP SLGCLLELTW G + +SL  G  RKFLEDGDEV  +G+CKG+GY VGFGTCSGK++
Sbjct: 361 PEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVL 420

Query: 299 PSTP 302
           P+ P
Sbjct: 421 PALP 424

Length = 424

>gnl\|CDD\|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase	Back alignment and domain information

>gnl\|CDD\|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	Back alignment and domain information

>gnl\|CDD\|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		302
PLN02856		424	fumarylacetoacetase	100.0
TIGR01266		415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	100.0
COG0179		266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
KOG2843		420	consensus Fumarylacetoacetase [Carbohydrate transp	100.0
TIGR02303		245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535		217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK10691		219	hypothetical protein; Provisional	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK12764		500	hypothetical protein; Provisional	100.0
TIGR02305		205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	100.0
PF01557		218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	100.0
TIGR03220		255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.92
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.91
TIGR02312		267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.86
TIGR03218		263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	99.76
COG3971		264	2-keto-4-pentenoate hydratase [Secondary metabolit	99.72
COG3970		379	Fumarylacetoacetate (FAA) hydrolase family protein	99.61
PF11010		194	DUF2848: Protein of unknown function (DUF2848); In	98.21
COG3802		333	GguC Uncharacterized protein conserved in bacteria	98.13
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	86.05
PRK10691		219	hypothetical protein; Provisional	84.64

>PLN02856 fumarylacetoacetase	Back alignment and domain information

Probab=100.00  E-value=1.4e-71  Score=541.16  Aligned_cols=302  Identities=77%  Similarity=1.336  Sum_probs=279.2

Q ss_pred             CCCCcccCCeeeecchHHHHHHhccccCCCCCCCCCccccccceeccCCceeeeCCCeeecCCCCCCC-CCCCCCCCCCC
Q 022156            1 MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPS   79 (302)
Q Consensus         1 ~~~p~~~~~~~~~~ny~~H~~~~g~~~~~~~~~~~p~~f~~P~~f~k~~ss~~~~g~~i~~P~~~~~~-~~~~~~~~~~~   79 (302)
                      |++|+++++|+||+||.+|+.|+|+.|++..++.+|.|++.|++|+|++||++++|++|.+|.++..+ .+...|.+.++
T Consensus       121 l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s  200 (424)
T PLN02856        121 MLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPS  200 (424)
T ss_pred             EcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCc
Confidence            78999999999999999999999998877666778999999999999999999999999999875432 22334667779


Q ss_pred             CCceeceEEEEEecCCCCCCCCCCHHHHhhhheeEEEEeecchhhhhhhhhcCCCCcccccCCCCCCCceecccccCccc
Q 022156           80 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFA  159 (302)
Q Consensus        80 ~~ld~E~ELavvigk~l~~g~~v~~~eA~~~I~Gy~~~nD~taRd~q~~~~~~~~~~~aK~~d~~lGP~ivt~d~l~~~~  159 (302)
                      +.+|||+||++||||++++|++++++||.+||+||+++||||+||+|.|++.+++|+++|+|++++||||+|.+++++++
T Consensus       201 ~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r  280 (424)
T PLN02856        201 AKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFR  280 (424)
T ss_pred             CceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEccccccccc
Confidence            99999999999999987778999999999999999999999999999999988999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccccCCceeeEEEEEEeecCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEecCCCCC
Q 022156          160 CDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~i~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lia~l~s~~~~L~~GDvI~TGTp~G  239 (302)
                      ...|++++++++||.+++..+++|.|+|+++.++..||+++|++++++|+|+++++|+|++|++|+|+|||||+||||+|
T Consensus       281 ~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG  360 (424)
T PLN02856        281 CDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISG  360 (424)
T ss_pred             ccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCC
Confidence            98899999999999999888999999998775566688999999999999999999998669999999999999999999


Q ss_pred             CccCCCCcEEEEEecCccceee-CCCCCCCCCCCCEEEEEEEecCCCceeeeeeeeeEEeeCCC
Q 022156          240 PEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP  302 (302)
Q Consensus       240 v~~~~~Gd~le~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~l~~~vv~~~~  302 (302)
                      +++.+.||.+|++++|..++++ ++..++||++||+|+++++|..||.+||||+|+.+|.+|.+
T Consensus       361 ~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~  424 (424)
T PLN02856        361 PEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP  424 (424)
T ss_pred             CccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence            9999999999999999999999 46679999999999999999999999999999999999864

>TIGR01266 fum_ac_acetase fumarylacetoacetase	Back alignment and domain information

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK12764 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit	Back alignment and domain information

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I	Back alignment and domain information

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	Back alignment and domain information

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase	Back alignment and domain information

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	Back alignment and domain information

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function	Back alignment and domain information

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		302
1hyo_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-107
1qco_A		423	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-106
1qqj_A		419	Crystal Structure Of Mouse Fumarylacetoacetate Hydr		1e-106
1qcn_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-102

>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421

Back alignment and structure

Iteration: 1

Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust. Identities = 177/301 (58%), Positives = 218/301 (72%), Gaps = 1/301 (0%) Query: 1 MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60 M LP IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I Sbjct: 117 MHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIR 176 Query: 61 RPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120 RP GQ + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDW Sbjct: 177 RPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDW 236 Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180 SARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL Sbjct: 237 SARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYT 296 Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240 +DI+L V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG Sbjct: 297 FDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS 356 Query: 241 EPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 299 +PES G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P Sbjct: 357 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 416 Query: 300 S 300 + Sbjct: 417 A 417

PyMOL of 1hyo

>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423

Back alignment and structure

>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419

Back alignment and structure

>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		302
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-139
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	7e-34
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	2e-19
1wzo_A		246	HPCE; structural genomics, riken structural genomi	9e-15
3rr6_A		265	Putative uncharacterized protein; structural genom	1e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	3e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	9e-13
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	6e-14
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	7e-14
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	2e-13
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	3e-13
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	3e-13
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	8e-11

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421	Back alignment and structure

 Score =  398 bits (1023), Expect = e-139
 Identities = 181/301 (60%), Positives = 224/301 (74%), Gaps = 1/301 (0%)

Query: 1   MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV 60
           M LP  IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I 
Sbjct: 117 MHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIR 176

Query: 61  RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 120
           RP GQ  P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDW
Sbjct: 177 RPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDW 236

Query: 121 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 180
           SARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       
Sbjct: 237 SARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYT 296

Query: 181 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 240
           +DI+L V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG 
Sbjct: 297 FDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS 356

Query: 241 EPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 299
           +PES G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P
Sbjct: 357 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 416

Query: 300 S 300
           +
Sbjct: 417 A 417

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		302
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	100.0
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	100.0
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A		288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A		265	Putative uncharacterized protein; structural genom	100.0
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	100.0
1wzo_A		246	HPCE; structural genomics, riken structural genomi	100.0
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	100.0
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	100.0
2wqt_A		270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	91.42

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A	Back alignment and structure

Probab=100.00  E-value=6.8e-68  Score=517.75  Aligned_cols=301  Identities=60%  Similarity=1.148  Sum_probs=268.6

Q ss_pred             CCCCcccCCeeeecchHHHHHHhccccCCCCCCCCCccccccceeccCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCC
Q 022156            1 MLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQ   80 (302)
Q Consensus         1 ~~~p~~~~~~~~~~ny~~H~~~~g~~~~~~~~~~~p~~f~~P~~f~k~~ss~~~~g~~i~~P~~~~~~~~~~~~~~~~~~   80 (302)
                      |++|+.+++|+||.+|.+|++++++.+++.+.+.+|.|++.|++|+|++++++++|++|.+|.++..+.++..|.+.++.
T Consensus       117 ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~  196 (421)
T 1hyo_A          117 MHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACR  196 (421)
T ss_dssp             EECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECS
T ss_pred             EcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcCCCCEEEEcccceEEcCCCeEECCCCcccCcccccccccccc
Confidence            57899999999999999999999987665555678999999999999999999999999999765433444445556689


Q ss_pred             CceeceEEEEEecCCCCCCCCCCHHHHhhhheeEEEEeecchhhhhhhhhcCCCCcccccCCCCCCCceecccccCcccC
Q 022156           81 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFAC  160 (302)
Q Consensus        81 ~ld~E~ELavvigk~l~~g~~v~~~eA~~~I~Gy~~~nD~taRd~q~~~~~~~~~~~aK~~d~~lGP~ivt~d~l~~~~~  160 (302)
                      .+|||+||||||||+++.|++++++||++||+||+++||||+||+|.|++.+++|++||+|++++|||+++.++++++|.
T Consensus       197 ~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~  276 (421)
T 1hyo_A          197 LLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVV  276 (421)
T ss_dssp             CEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEE
T ss_pred             CceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecchhhcccccc
Confidence            99999999999999977789999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccccCCceeeEEEEEEeecCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEecCCCCCC
Q 022156          161 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP  240 (302)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~i~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lia~l~s~~~~L~~GDvI~TGTp~Gv  240 (302)
                      .+|++++++++||.++++..+.|.|++++|+++..||+++|++++++|+|+++++|+|++|++++|+|||||+||||+|+
T Consensus       277 ~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~  356 (421)
T 1hyo_A          277 PNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS  356 (421)
T ss_dssp             CCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCS
T ss_pred             cccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCC
Confidence            99999999999998777776556665543222222299999999999999999999998668999999999999999999


Q ss_pred             ccCCCCcEEEEEecCccceee-CCCCCCCCCCCCEEEEEEEecCCCceeeeeeeeeEEeeCC
Q 022156          241 EPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  301 (302)
Q Consensus       241 ~~~~~Gd~le~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~l~~~vv~~~  301 (302)
                      ++.+.||.+|++++|++++++ +++++.|||+||+|+++++|..||++||||+|+|+|+++.
T Consensus       357 ~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~  418 (421)
T 1hyo_A          357 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  418 (421)
T ss_dssp             SGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             CCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeEEEEecCC
Confidence            999999999999999999998 4678999999999999999989999999999999999985

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}	Back alignment and structure

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		302
d1hyoa2		298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-114
d1nkqa_		257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	4e-15
d1sawa_		217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	5e-07
d1gtta2		216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	2e-04

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  330 bits (846), Expect = e-114
 Identities = 178/295 (60%), Positives = 221/295 (74%), Gaps = 1/295 (0%)

Query: 7   IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 66
           IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP GQ 
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62

Query: 67  APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 126
            P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63  RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122

Query: 127 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 186
            WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L 
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182

Query: 187 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 246
           V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242

Query: 247 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 300
            +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297

PyMOL of d1hyoa2

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		302
d1hyoa2		298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	100.0
d1gtta1		213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nr9a_		221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_		217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta2		216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1sv6a_		261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.83
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	87.48

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-72  Score=526.36  Aligned_cols=296  Identities=60%  Similarity=1.153  Sum_probs=272.1

Q ss_pred             ccCCeeeecchHHHHHHhccccCCCCCCCCCccccccceeccCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceec
Q 022156            6 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFE   85 (302)
Q Consensus         6 ~~~~~~~~~ny~~H~~~~g~~~~~~~~~~~p~~f~~P~~f~k~~ss~~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E   85 (302)
                      .+++|+||++|.+|++++|+.|++...+.+|.||+.|++|+|++||++++|++|.+|.+...+.++++|.+++++.+|||
T Consensus         2 ~~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE   81 (298)
T d1hyoa2           2 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDME   81 (298)
T ss_dssp             CCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECB
T ss_pred             cccccceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeee
Confidence            58999999999999999999887776778999999999999999999999999999986655556667777789999999


Q ss_pred             eEEEEEecCCCCCCCCCCHHHHhhhheeEEEEeecchhhhhhhhhcCCCCcccccCCCCCCCceecccccCcccCCCCCC
Q 022156           86 LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQ  165 (302)
Q Consensus        86 ~ELavvigk~l~~g~~v~~~eA~~~I~Gy~~~nD~taRd~q~~~~~~~~~~~aK~~d~~lGP~ivt~d~l~~~~~~~~~~  165 (302)
                      +|||+||||++..|++++++||++||+|||++||||+||+|..++.+++|+++|+|++++|||+++++++.+++...+..
T Consensus        82 ~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~  161 (298)
T d1hyoa2          82 LEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQ  161 (298)
T ss_dssp             EEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCC
T ss_pred             ceEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccchhcCccccccccc
Confidence            99999999987668999999999999999999999999999988877899999999999999999999998888777777


Q ss_pred             CCCCCccccccCCceeeEEEEEEeecCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEecCCCCCCccCCC
Q 022156          166 DPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL  245 (302)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lia~l~s~~~~L~~GDvI~TGTp~Gv~~~~~  245 (302)
                      +++.+.++.+.+....++.|++++|...++||+++|++++++|+|+++++|+|++|++++|+|||||+||||+|++++++
T Consensus       162 dp~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~  241 (298)
T d1hyoa2         162 DPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF  241 (298)
T ss_dssp             SSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGC
T ss_pred             CccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCC
Confidence            77888888888888888888887887788999999999999999999999998768999999999999999999999999


Q ss_pred             CcEEEEEecCccceee-CCCCCCCCCCCCEEEEEEEecCCCceeeeeeeeeEEeeCC
Q 022156          246 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  301 (302)
Q Consensus       246 Gd~le~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~l~~~vv~~~  301 (302)
                      ||.+|++++|+.++++ .++++.|||+||+|++|++|+.+|.++|||+|+|+|++|.
T Consensus       242 Gd~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~  298 (298)
T d1hyoa2         242 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  298 (298)
T ss_dssp             CBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             CcEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence            9999999999999998 4566789999999999999999999999999999999984

PyMOL of d1hyoa2

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure