Citrus Sinensis ID: 022157

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM
Secondary Structure (PSIPRED)
cHHHHHccccEEEEEEEEcccccccccccEEEEEEEEcccHHHHHHHccccccccccccccEEEEEEEcccccccccccEEEEEEcHHHccccccEEEEEccccccccccccccEEEEccccccccEEEccccEEEEcccccccccccccccccccccccccccccccccEEEEccEEEEEcccccccccccEEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccccccccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccEEEEEEEEEcccccccccEEcccccccccHHHHHHHccccccccccccccEEEEEEccccccccccccccccEcHHHcccccccEEEEEEcccccccccccccEEEEEcccEccHHHHHHEEEEEEcccccccEEEcccccccccccHHHccccccHHHHcccccEEEEccccccEEccccEEEEEEEEcccccEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEEEccccHcHEEEEEHHcHHcccccccHHHHHHHHcccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mchlylnnpKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLElvgipnltsvtrsggkhvefvsidkckeenggpykasiplsqatnpeADVLLAYEmngeplnrdhgyplrvvVPGVIGARSVKWLDTINILAEECQgffmqkdykmfppsvnwdninwksrrplmdfpVQCVICSledvnvmkpgkakVSGYavsgggrgiervdisvdggknWVEASRYQktgipyiadhmssdKWAWVFFEVIIDIPHSTQIVAKAVDtaanvqpesVETIWNLRGVLNTSWHRVQVRVGHSNM
Flexible Loop (DISEMBL)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNltsvtrsggkhveFVSIDKCKEENGGPYkasiplsqatNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEdvnvmkpgKAKVSgyavsgggrgiervdisvdggknWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVlntswhrvqvrvghsnm
Low Complexity Region (SEG)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM
Disordered region (IsUnstruct)
**HLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKC*********************ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV*****
Disordered Region (DISOPRED)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG*S**
Disordered Region (DISEMBL)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM
Disordered Region (DISPRO)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9S850	393	Sulfite oxidase OS=Arabid	no	no	0.973	0.748	0.722	1e-129
Q8R086	546	Sulfite oxidase, mitochon	yes	no	0.910	0.503	0.421	2e-52
Q07116	546	Sulfite oxidase, mitochon	yes	no	0.831	0.459	0.440	3e-51
P07850	459	Sulfite oxidase OS=Gallus	yes	no	0.923	0.607	0.418	8e-51
Q60HD0	545	Sulfite oxidase, mitochon	N/A	no	0.920	0.510	0.420	8e-50
P51687	545	Sulfite oxidase, mitochon	yes	no	0.831	0.460	0.447	1e-49
Q9VWP4	573	Probable sulfite oxidase,	yes	no	0.824	0.434	0.409	2e-49
P39866	890	Nitrate reductase [NADH]	N/A	no	0.821	0.278	0.326	3e-34
P39869	900	Nitrate reductase [NADH]	N/A	no	0.943	0.316	0.311	8e-34
P16081	916	Nitrate reductase [NADH]	no	no	0.814	0.268	0.317	1e-33

>sp|Q9S850|SUOX_ARATH Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/306 (72%), Positives = 254/306 (83%), Gaps = 12/306 (3%)

Query: 9   PKEYINLLLFCA--VRTNLSFLYHFL----------SAVWSGAKLADVLELVGIPNLTSV 56
           PK  +   L CA   RT +S + +            +AVW GAKLADVLELVGIP LT+ 
Sbjct: 88  PKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTAS 147

Query: 57  TRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 116
           T  G +HVEFVS+D+CKEENGGPYKASI LSQATNPEADVLLAYEMNGE LNRDHG+PLR
Sbjct: 148 TNLGARHVEFVSVDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLR 207

Query: 117 VVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQ 176
           VVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKMFPPSVNWDNINW SRRP MDFPVQ
Sbjct: 208 VVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQ 267

Query: 177 CVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIAD 236
             ICS+EDV ++KPGK  + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G  YI++
Sbjct: 268 SAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISE 327

Query: 237 HMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVR 296
           H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWHRV +R
Sbjct: 328 HSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLR 387

Query: 297 VGHSNM 302
           +GHSN+
Sbjct: 388 LGHSNL 393

Probably involved in sulfite oxidative detoxification.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 1

>sp|Q8R086|SUOX_MOUSE Sulfite oxidase, mitochondrial OS=Mus musculus GN=Suox PE=1 SV=2

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 180/304 (59%), Gaps = 29/304 (9%)

Query: 9   PKEYINLLLFCA--VRTNLSFLYH----------FLSAVWSGAKLADVLELVGIPNLTSV 56
           PK  + + L CA   R+ +S +              +A W+GA+L DVL   G     S 
Sbjct: 255 PKHEVTVTLQCAGNRRSEMSKVKEVKGLEWRTGAISTARWAGARLCDVLAQAGHRLCDSE 314

Query: 57  TRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 116
                 HV F  +D   +  G  Y ASIPL++A +PEA+VLLAYEMNG+PL RDHG+P+R
Sbjct: 315 A-----HVCFEGLDS--DPTGTAYGASIPLARAMDPEAEVLLAYEMNGQPLPRDHGFPVR 367

Query: 117 VVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQ 176
           VVVPGV+GAR VKWL  +++ +EE    + ++DYK F PSV+WD +N+     + + P+Q
Sbjct: 368 VVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKGFSPSVDWDTVNFDLAPSIQELPIQ 427

Query: 177 CVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIAD 236
             I   +D  +++ G+  + GYA SGGGR + RVD+SVDGG  W EA    +   P  A 
Sbjct: 428 SAITQPQDGAIVESGEVTIKGYAWSGGGRAVIRVDVSVDGGLTWQEAELEGEEQCPRKA- 486

Query: 237 HMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAANVQPESVETIWNLRGVLNTSWHRV 293
                 WAW  +++   +P   +   I+ KAVD + NVQP++V  IWNLRGVL+ +WHRV
Sbjct: 487 ------WAWRIWQLKAQVPAEQKELNIICKAVDDSYNVQPDTVAPIWNLRGVLSNAWHRV 540

Query: 294 QVRV 297
            V+V
Sbjct: 541 HVQV 544

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q07116|SUOX_RAT Sulfite oxidase, mitochondrial OS=Rattus norvegicus GN=Suox PE=1 SV=2

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/268 (44%), Positives = 167/268 (62%), Gaps = 17/268 (6%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W+GA+L DVL   G        R    HV F  +D   +  G  Y ASIPL++A +P
Sbjct: 291 TARWAGARLCDVLAQAG-----HRLRETEAHVCFEGLDS--DPTGTAYGASIPLARAMDP 343

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           +A+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++ +EE    + ++DYK 
Sbjct: 344 QAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKG 403

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           F PSV+WD +++     + + P+Q  I   +D   ++ G+  + GYA SGGGR + RVD+
Sbjct: 404 FSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKGYAWSGGGRAVIRVDV 463

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
           S+DGG  W EA    +   P  A       WAW  +++   +P   +   I+ KAVD + 
Sbjct: 464 SMDGGLTWQEAELEGEEQHPRKA-------WAWRIWQLKAHVPAEQKELNIICKAVDDSY 516

Query: 270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
           NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct: 517 NVQPDTVAPIWNLRGVLSNAWHRVHVQV 544

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|P07850|SUOX_CHICK Sulfite oxidase OS=Gallus gallus GN=SUOX PE=1 SV=3

 Score =  201 bits (510), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 171/306 (55%), Gaps = 27/306 (8%)

Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA L DVL   
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGASLRDVLLHA 226

Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        GG+HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 227 GFPE----ELQGGEHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280

Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDH +P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F P V+WD +++++  
Sbjct: 281 RDHRFPVRVVVPGVVGARSVKWLRRVAVSPDESPSRWQQNDYKGFSPCVDWDTVDYRTAP 340

Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400

Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 453

Query: 287 NTSWHR 292
           +T+WHR
Sbjct: 454 STAWHR 459

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q60HD0|SUOX_MACFA Sulfite oxidase, mitochondrial OS=Macaca fascicularis GN=SUOX PE=2 SV=3

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 177/307 (57%), Gaps = 29/307 (9%)

Query: 7   NNPKEYINLLLFCA--VRTNLSFLYH----------FLSAVWSGAKLADVLELVGIPNLT 54
           N PK  I + L CA   R+ ++ +              +A W+GA+L DVL   G  +  
Sbjct: 252 NFPKYEITVTLQCAGNRRSEMTQVKEVKGLEWRTGAISTARWAGARLCDVLAKAG--HQL 309

Query: 55  SVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYP 114
             T +   HV F  +D   +  G  Y ASIPL++A +PEA VLLAYEMNG+PL RDHG+P
Sbjct: 310 CETEA---HVCFEGLDS--DPTGTAYGASIPLARAMDPEAGVLLAYEMNGQPLPRDHGFP 364

Query: 115 LRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFP 174
           +RVVVPGV+GAR VKWL  +++  EE    + ++DYK F PSV+WD +++ S   + + P
Sbjct: 365 VRVVVPGVVGARHVKWLGRVSVQPEESYSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELP 424

Query: 175 VQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYI 234
           VQ  I    D   ++ G+  + GYA SGGGR + RVD+S+DGG  W  A    +   P  
Sbjct: 425 VQSAITEPRDGETVESGEVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEEQRPRK 484

Query: 235 ADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAANVQPESVETIWNLRGVLNTSWH 291
           A       WAW  +++   +P   +   IV KAVD   NVQP++V  IWNLRGVL+ +WH
Sbjct: 485 A-------WAWRLWQLQAPVPAGQKELNIVCKAVDDGYNVQPDTVAPIWNLRGVLSNAWH 537

Query: 292 RVQVRVG 298
           RV V V 
Sbjct: 538 RVHVFVA 544

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|P51687|SUOX_HUMAN Sulfite oxidase, mitochondrial OS=Homo sapiens GN=SUOX PE=1 SV=2

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/268 (44%), Positives = 165/268 (61%), Gaps = 17/268 (6%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W+GA+L DVL   G  +    T +   HV F  +D   +  G  Y ASIPL++A +P
Sbjct: 290 TARWAGARLCDVLAQAG--HQLCETEA---HVCFEGLDS--DPTGTAYGASIPLARAMDP 342

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EA+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++  EE    + ++DYK 
Sbjct: 343 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVQPEESYSHWQRRDYKG 402

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           F PSV+W+ +++ S   + + PVQ  I    D   ++ G+  + GYA SGGGR + RVD+
Sbjct: 403 FSPSVDWETVDFDSAPSIQELPVQSAITEPRDGETVESGEVTIKGYAWSGGGRAVIRVDV 462

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
           S+DGG  W  A    +   P  A       WAW  +++   +P   +   IV KAVD   
Sbjct: 463 SLDGGLTWQVAKLDGEEQRPRKA-------WAWRLWQLKAPVPAGQKELNIVCKAVDDGY 515

Query: 270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
           NVQP++V  IWNLRGVL+ +WHRV V V
Sbjct: 516 NVQPDTVAPIWNLRGVLSNAWHRVHVYV 543

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9VWP4|SUOX_DROME Probable sulfite oxidase, mitochondrial OS=Drosophila melanogaster GN=CG7280 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/276 (40%), Positives = 158/276 (57%), Gaps = 27/276 (9%)

Query: 33  SAVWSGAKLADVLELVGI-PNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATN 91
           +A WSGA+L D+L   G+ P+ T       KHV F   D   +    PY ASIPL++A +
Sbjct: 313 NAKWSGARLCDILREQGVQPDET-------KHVIFEGADL--DPTSHPYGASIPLAKALD 363

Query: 92  PEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYK 151
           P  DV+LAYEMN EPL+RDHG+P+RV+VPG +GAR+VKWL  I +  +E    + Q DYK
Sbjct: 364 PRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNVKWLTRIVVADKESDSHWQQNDYK 423

Query: 152 MFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK----PGKAKVSGYAVSGGGRGI 207
            F PS +WD +++     +   PV   IC+ +    +K     G   V GYA SGGGR I
Sbjct: 424 GFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQPGARVKVDDDEGHITVRGYAWSGGGRKI 483

Query: 208 ERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHS------TQIV 261
            RVD++ D G +W  A   Q+       +      + W  +   + +  +       +I 
Sbjct: 484 VRVDLTNDEGVSWHVAELEQE-------EMPDGRHYGWSLWTARLPVSEAQRRAGDVEIW 536

Query: 262 AKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297
           AKAVD+A NVQPE  E IWNLRGVL  ++H+V+V++
Sbjct: 537 AKAVDSAYNVQPEKFEHIWNLRGVLANAYHKVKVKI 572

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|P39866|NIA2_PHAVU Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 37/285 (12%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGK-HVEFVSIDKCKEENGGPYKASIPLSQATN 91
           ++VW G  +  VL   GI     +TR  G  HV F   +      G  Y  SI    A +
Sbjct: 191 TSVWRGVPVRHVLRRCGI-----LTRGKGALHVSFEGAENLPGGGGSKYGTSISREMAMD 245

Query: 92  PEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYK 151
           P  D++LAY  NGEPL  DHG+P+R+++PG IG R VKWL  I +  +EC+  +  KD +
Sbjct: 246 PSRDIILAYMQNGEPLAPDHGFPIRMIIPGFIGGRMVKWLKRIVVTEQECESHYHYKDNR 305

Query: 152 MFPPSVNWDNIN-----WKSRRPLMDFPVQCVI---CSLEDVNVMKPGKAK---VSGYAV 200
           + P  V+ +  N     +K    + +  +  VI   C  E + +      +   V GYA 
Sbjct: 306 VLPSHVDPELANEEGWWFKPEYIINELNINSVITTPCHDEILPINSWTTQRPYVVRGYAY 365

Query: 201 SGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK-----WAWVFFEV---II 252
           SGGGR + RV++++DGG+ W   +           DH          W W F+ +   ++
Sbjct: 366 SGGGRKVTRVEVTLDGGETWHVCT----------LDHPEKPNKYGKYWCWCFWSLEVEVL 415

Query: 253 DIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297
           D+  + +I  +A D   N QPE++  IWNL G++N  W RV+  V
Sbjct: 416 DLLGTKEIAVRAWDEGLNTQPENL--IWNLMGMMNNCWFRVKTNV 458

Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.

Phaseolus vulgaris (taxid: 3885)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

>sp|P39869|NIA_LOTJA Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1

 Score =  144 bits (363), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 156/324 (48%), Gaps = 39/324 (12%)

Query: 1   MCHLYLNNPKEYINLLLFCA---------VRTNLSFLYH---FLSAVWSGAKLADVLELV 48
           M  L  + P   + + L CA         VR ++ F +      ++VW G  L  +L   
Sbjct: 154 MDRLVRDFPSRELPVTLVCAGNRRKEQNMVRQSIGFNWGSAGVSTSVWRGVSLRHILRRC 213

Query: 49  GIPNLTSVTRS-GGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPL 107
            I      TRS G  HV F   +      G  Y  SI    A +P  DV+LAY  NGE L
Sbjct: 214 RIQ-----TRSRGALHVCFEGDEDLPGGGGSKYSTSIRREVAMDPSRDVILAYMQNGEVL 268

Query: 108 NRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNIN---- 163
             DHG+P+RV++PG IG R VKWL  I +  EEC G +  KD ++ P  V+ +  N    
Sbjct: 269 APDHGFPVRVIIPGFIGGRMVKWLKRIVVTEEECDGHYHYKDNRVLPSHVDAELANEEGW 328

Query: 164 -WKSRRPLMDFPVQCVICS-----LEDVNVMKPGKA-KVSGYAVSGGGRGIERVDISVDG 216
            +K    + +  +  VI +     +  +N     +   + GY+ SGGGR + RV++++DG
Sbjct: 329 WYKPEYIINELNINSVITTPCHDEILPINAWTTQRPYTLRGYSYSGGGRKVTRVEVTLDG 388

Query: 217 GKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQP 273
           G+ W   +  Q+        +     W W F+ +   ++D+  + +I  +A D A N QP
Sbjct: 389 GETWFVCALDQQE-----KPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEALNTQP 443

Query: 274 ESVETIWNLRGVLNTSWHRVQVRV 297
           E++  IWN+ G++N  W RV+  V
Sbjct: 444 ENL--IWNVMGMMNNCWFRVKTNV 465

Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.

Lotus japonicus (taxid: 34305)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

>sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 41/287 (14%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           ++VW GA+L DVL   GI      ++ G  +V F   +      G  Y  SI    A +P
Sbjct: 218 TSVWRGARLRDVLRRCGI----MPSKGGALNVCFEGAEDLPGGGGSKYGTSITRQWALDP 273

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             D++LAY  NGEPL  DHG+P+R ++PG IG R VKW+  I +   E   ++  KD ++
Sbjct: 274 SRDIMLAYMQNGEPLLPDHGFPVRAIIPGCIGGRMVKWVKRIIVTTAESDNYYHYKDNRV 333

Query: 153 FPPSVNWDNIN-----WKSRRPLMDFPVQCVICS-----LEDVNVMKPGKA-KVSGYAVS 201
            P  V+ +  N     +K    + +  V  VI +     +  +N +   +   + GYA S
Sbjct: 334 LPSHVDAELANADAWWYKPEYIINELNVNSVITTPGHDEILPINGITTQRGYTMKGYAYS 393

Query: 202 GGGRGIERVDISVDGGKNWV--------EASRYQKTGIPYIADHMSSDKWAWVFFEV--- 250
           GGG+ I RV++++DGG+ W+        + ++Y K              W W F+ V   
Sbjct: 394 GGGKRITRVEVTLDGGETWLVCVLDLPEKPTKYGK-------------HWCWCFWSVEVE 440

Query: 251 IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297
           ++D+  + +I  +A D + N QPE +  IWNL G++N  W +V+V V
Sbjct: 441 VLDLLGAKEIAVRAWDQSHNTQPEKL--IWNLMGMMNNCWFKVKVNV 485

Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
255536913	393	sulfite reductase, putative [Ricinus com	0.894	0.687	0.874	1e-140
255762690	393	sulfite oxidase [Hibiscus cannabinus]	0.990	0.760	0.755	1e-135
224060247	393	predicted protein [Populus trichocarpa]	0.894	0.687	0.840	1e-134
356571356	393	PREDICTED: sulfite oxidase-like [Glycine	0.894	0.687	0.822	1e-134
359358706	393	sulfite oxidase [Nicotiana benthamiana]	0.894	0.687	0.833	1e-133
82941457	396	sulfite oxidase [Codonopsis lanceolata]	0.980	0.747	0.775	1e-132
82621174	393	sulfite oxidase-like [Solanum tuberosum]	0.894	0.687	0.818	1e-132
350534980	393	sulfite oxidase [Solanum lycopersicum] g	0.894	0.687	0.811	1e-131
449443347	393	PREDICTED: sulfite oxidase-like [Cucumis	0.894	0.687	0.814	1e-130
297828558	393	hypothetical protein ARALYDRAFT_896052 [	0.894	0.687	0.796	1e-129

>gi|255536913|ref|XP_002509523.1| sulfite reductase, putative [Ricinus communis] gi|223549422|gb|EEF50910.1| sulfite reductase, putative [Ricinus communis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/270 (87%), Positives = 254/270 (94%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGI  LTS+T+SGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLELVGISKLTSMTKSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLD+INI+AEECQGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNINW +RRP MDFPVQC ICSLEDV  +KPGK KVSGYA SGGGRGIERVD+
Sbjct: 244 FPPSVNWDNINWSTRRPQMDFPVQCAICSLEDVTTVKPGKVKVSGYAASGGGRGIERVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           SVDGGK W+EASR+QKTG+PYI+D M +DKWAWV FEV +D+PHST+IVAKAVD+AANVQ
Sbjct: 304 SVDGGKTWMEASRHQKTGVPYISDDMYNDKWAWVLFEVTLDVPHSTKIVAKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PESVE IWNLRG+LNTSWHRVQVRVGHSNM
Sbjct: 364 PESVEDIWNLRGILNTSWHRVQVRVGHSNM 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255762690|gb|ACU33027.1| sulfite oxidase [Hibiscus cannabinus]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/315 (75%), Positives = 263/315 (83%), Gaps = 16/315 (5%)

Query: 4   LYLNN----PKEYINLLLFCA--VRTNLSFLYHFL----------SAVWSGAKLADVLEL 47
           LY+ +    PK  +  +L CA   RT +S                +AVW GAKLADVLEL
Sbjct: 79  LYMRDVRMLPKYNVTAILQCAGNRRTAMSKTRKVRGVGWDVSAIGNAVWGGAKLADVLEL 138

Query: 48  VGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPL 107
           VGIP LTS T+SGGKHVEFVSIDKCKEENGGPYKASIPL QATNPEADVLLAYEMNGEPL
Sbjct: 139 VGIPKLTSRTQSGGKHVEFVSIDKCKEENGGPYKASIPLIQATNPEADVLLAYEMNGEPL 198

Query: 108 NRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSR 167
           NRDHGYPLRV+VPGVIGARSVKWLD+INILAEECQG FMQKDYKMFPPSV+W NINW +R
Sbjct: 199 NRDHGYPLRVIVPGVIGARSVKWLDSINILAEECQGSFMQKDYKMFPPSVDWXNINWSTR 258

Query: 168 RPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 227
           RP MDFPVQ VICSLEDV  +KPGK  + GYA SGGGRGIERVD+S+DGGK W+EASR Q
Sbjct: 259 RPQMDFPVQSVICSLEDVQSIKPGKITIXGYAASGGGRGIERVDVSIDGGKTWLEASRSQ 318

Query: 228 KTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLN 287
           KTGIPYI+DH SSDKWAWV FE+ +DIPHST+IVAKAVD+AANVQPE+V+ IWNLRG+LN
Sbjct: 319 KTGIPYISDHESSDKWAWVLFEITVDIPHSTEIVAKAVDSAANVQPENVQDIWNLRGILN 378

Query: 288 TSWHRVQVRVGHSNM 302
           TSW RVQ+RVGHSNM
Sbjct: 379 TSWXRVQIRVGHSNM 393

Source: Hibiscus cannabinus

Species: Hibiscus cannabinus

Genus: Hibiscus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060247|ref|XP_002300104.1| predicted protein [Populus trichocarpa] gi|222847362|gb|EEE84909.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/270 (84%), Positives = 245/270 (90%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           + VW GAKLADVLELVGI  LTS T+SGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NGVWGGAKLADVLELVGISKLTSTTKSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVL+AYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLD INI+AEE QGFFMQKDYKM
Sbjct: 184 EADVLVAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDCINIIAEESQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNINW +RRP MDFPVQ  ICSLEDV  +KPGK KVSGYA SGGGRGI+RVD+
Sbjct: 244 FPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVTAIKPGKVKVSGYAASGGGRGIDRVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           SVDGGK WVEASRYQK G+ YI+D M+SDKWAWV F+V +D P ST+IV KAVD+AANVQ
Sbjct: 304 SVDGGKTWVEASRYQKPGVQYISDDMNSDKWAWVLFDVTVDAPQSTEIVVKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PE+V+ IWNLRG+LNTSWHRVQVRVGHSNM
Sbjct: 364 PENVQEIWNLRGILNTSWHRVQVRVGHSNM 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571356|ref|XP_003553844.1| PREDICTED: sulfite oxidase-like [Glycine max]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/270 (82%), Positives = 248/270 (91%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A+W GAKL+DVLEL+GIP LTSVT  GG+HVEFVSIDKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NAIWGGAKLSDVLELIGIPKLTSVTEFGGRHVEFVSIDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWL+ INI+ EECQGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLEDINIIEEECQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNI+W +RRP MDFPVQCVICSLEDV+ +KPGK K+SGYA SGGGRGIERVD+
Sbjct: 244 FPPSVNWDNIDWSTRRPQMDFPVQCVICSLEDVSTIKPGKVKISGYAASGGGRGIERVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           SVDGGK W+EASR QK+G+PYI++H SSDKWAWV FEV  DI HST+I+AKAVD+AANVQ
Sbjct: 304 SVDGGKTWMEASRIQKSGVPYISEHASSDKWAWVLFEVTADILHSTEIIAKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PE VE IWNLRG+LNTSWHRV+V+  +SN+
Sbjct: 364 PEKVEDIWNLRGILNTSWHRVKVQASYSNL 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359358706|gb|AEV40816.1| sulfite oxidase [Nicotiana benthamiana]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/270 (83%), Positives = 248/270 (91%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVL+LVGIP LTS+T+SGGKHVEFVSIDKCKEE GGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLKLVGIPYLTSITQSGGKHVEFVSIDKCKEEKGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLD+INI+AEECQGFF+QKDYKM
Sbjct: 184 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFVQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPP+VNWDNINW +RRP MDFPVQC ICSLEDV+V+K GK  + GYAVSGGGRGIERVD+
Sbjct: 244 FPPTVNWDNINWSTRRPQMDFPVQCAICSLEDVSVVKHGKITIKGYAVSGGGRGIERVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           S+DGGK WVEA+RYQ TGIPYIAD  SSDKWAWVFFE   +IP S +IVAKAVD AANVQ
Sbjct: 304 SIDGGKTWVEATRYQTTGIPYIADDGSSDKWAWVFFEAEANIPQSAEIVAKAVDIAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PES+++IWNLRG+LNTSWH VQVRVG +N+
Sbjct: 364 PESIDSIWNLRGILNTSWHPVQVRVGQANL 393

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82941457|dbj|BAE48793.1| sulfite oxidase [Codonopsis lanceolata]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/308 (77%), Positives = 259/308 (84%), Gaps = 12/308 (3%)

Query: 7   NNPKEYINLLLFCA--VRTNLSF----------LYHFLSAVWSGAKLADVLELVGIPNLT 54
           N PK  +  +L CA   RT +S           +    +AVW GAKLADVLELVGIP LT
Sbjct: 86  NLPKYNVTAVLQCAGNRRTAMSKTRTVKGVGWDVSAIGNAVWGGAKLADVLELVGIPKLT 145

Query: 55  SVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYP 114
           SVT  GGKHVEFVSID+CKEENGGPYKASIPLSQATNPEADVLLAYEMNGE LNRDHGYP
Sbjct: 146 SVTPWGGKHVEFVSIDRCKEENGGPYKASIPLSQATNPEADVLLAYEMNGETLNRDHGYP 205

Query: 115 LRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFP 174
           LRVVVPGVIGARSVKWL++INI A+ CQGFFMQKDYKMFPPSVNW+NI+W SRRP MDFP
Sbjct: 206 LRVVVPGVIGARSVKWLESINIDAKVCQGFFMQKDYKMFPPSVNWENIDWSSRRPQMDFP 265

Query: 175 VQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYI 234
           VQCVICSLEDVNV+K GK  + GYAVSGGGRGIERVD+S+DGGK W+EASRYQK GIPY 
Sbjct: 266 VQCVICSLEDVNVVKHGKVAIKGYAVSGGGRGIERVDVSIDGGKTWLEASRYQKPGIPYN 325

Query: 235 ADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ 294
           AD  SSDKWAWVFFE   DIP S +IVAKAVD+AANVQPE+VE IWNLRG+LNTSWHRVQ
Sbjct: 326 ADDESSDKWAWVFFEAEADIPPSAEIVAKAVDSAANVQPENVEVIWNLRGILNTSWHRVQ 385

Query: 295 VRVGHSNM 302
           VRVGHSNM
Sbjct: 386 VRVGHSNM 393

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82621174|gb|ABB86275.1| sulfite oxidase-like [Solanum tuberosum]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/270 (81%), Positives = 247/270 (91%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGIP LTS+T+SGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLELVGIPYLTSITQSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGEP+NRDHGYPLRVVVPGVIGARSVKWLD INI+AEECQGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGEPINRDHGYPLRVVVPGVIGARSVKWLDYINIIAEECQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPP+VNWDNINW +RRP MDFPVQ  ICSLEDV+V+K GK  + GYAVSGGGRGIERVD+
Sbjct: 244 FPPTVNWDNINWSTRRPQMDFPVQSAICSLEDVSVVKHGKITIKGYAVSGGGRGIERVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           S+DGGK W EA+RYQ+TG+PYIAD  SSD+WAWVFFE   +IP S +IVAKAVD +ANVQ
Sbjct: 304 SIDGGKTWEEATRYQRTGVPYIADDSSSDRWAWVFFEAEANIPQSAEIVAKAVDISANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PES++++WNLRG+LNTSWHRV VRVG +N+
Sbjct: 364 PESIDSVWNLRGILNTSWHRVHVRVGQANL 393

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534980|ref|NP_001234681.1| sulfite oxidase [Solanum lycopersicum] gi|114186917|gb|ABI53846.1| sulfite oxidase [Solanum lycopersicum]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/270 (81%), Positives = 246/270 (91%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGIP L S+T+SGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLELVGIPYLASITQSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLD+INI+AEEC+GFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECKGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPP+VNWDNINW +RRP MDFPVQ  ICSLEDV+V+K GK  + GYA+SGGGRGIERVD+
Sbjct: 244 FPPTVNWDNINWSTRRPQMDFPVQSAICSLEDVSVVKHGKINIKGYALSGGGRGIERVDV 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           S+DGGK W EA+RYQ+TG+PYIAD  SSD+WAWVFFE   +IP S +IVAKAVD +ANVQ
Sbjct: 304 SIDGGKTWEEATRYQRTGVPYIADDSSSDRWAWVFFEAEANIPQSAEIVAKAVDISANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PES+ ++WNLRG+LNTSWHRV VRVG +N+
Sbjct: 364 PESIGSVWNLRGILNTSWHRVHVRVGQANL 393

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443347|ref|XP_004139441.1| PREDICTED: sulfite oxidase-like [Cucumis sativus] gi|449523287|ref|XP_004168655.1| PREDICTED: sulfite oxidase-like [Cucumis sativus]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/270 (81%), Positives = 246/270 (91%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGIP  +  T+ GGKHVEFVSID+CKEE GGPYK SIPLSQA++P
Sbjct: 124 NAVWGGAKLADVLELVGIPKYSYRTQKGGKHVEFVSIDRCKEEKGGPYKGSIPLSQASDP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGE LNRDHGYPLRVVVPGVIGARSVKW+D+INI+AEECQGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGETLNRDHGYPLRVVVPGVIGARSVKWIDSINIIAEECQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNI+W +RRP MDFPVQCVICSLEDV+ +KPGK  VSGYAVSGGGRGIERVDI
Sbjct: 244 FPPSVNWDNIDWSTRRPQMDFPVQCVICSLEDVDHIKPGKVTVSGYAVSGGGRGIERVDI 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           SVDGGKNW+EASR QK G+PY+AD  SSDKWAWVFFEV +++  +T+I+AKAVD+AANVQ
Sbjct: 304 SVDGGKNWIEASRSQKVGVPYVADSPSSDKWAWVFFEVTLNVQRNTEIIAKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           P +VE IWNLRG+LNTSWHRVQVRVG SN+
Sbjct: 364 PGTVEEIWNLRGILNTSWHRVQVRVGRSNI 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828558|ref|XP_002882161.1| hypothetical protein ARALYDRAFT_896052 [Arabidopsis lyrata subsp. lyrata] gi|297328001|gb|EFH58420.1| hypothetical protein ARALYDRAFT_896052 [Arabidopsis lyrata subsp. lyrata]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/270 (79%), Positives = 244/270 (90%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGIP LT+ T  GG+HVEFVS+D+CKEENGGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLELVGIPKLTASTYLGGRHVEFVSVDRCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGE LNRDHG+PLRVVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNINW SRRP MDFPVQ  ICS+EDV ++KPGK  + GYAVSGGGRGIERVDI
Sbjct: 244 FPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDI 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           S+DGGKNWVEASR QK G  YI++H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQ
Sbjct: 304 SLDGGKNWVEASRTQKPGKHYISEHNSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PE+VE++WNLRG+LNTSWHRV +R+GHSN+
Sbjct: 364 PENVESVWNLRGILNTSWHRVLLRLGHSNL 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2078683	393	SOX "sulfite oxidase" [Arabido	0.894	0.687	0.788	4.1e-120
MGI|MGI:2446117	546	Suox "sulfite oxidase" [Mus mu	0.831	0.459	0.451	4.6e-57
UNIPROTKB|F1PVD4	693	SUOX "Uncharacterized protein"	0.831	0.362	0.455	2.5e-56
UNIPROTKB|P07850	459	SUOX "Sulfite oxidase" [Gallus	0.817	0.538	0.454	3.3e-56
RGD|619994	546	Suox "sulfite oxidase" [Rattus	0.831	0.459	0.444	1.4e-55
UNIPROTKB|Q07116	546	Suox "Sulfite oxidase, mitocho	0.831	0.459	0.444	1.4e-55
UNIPROTKB|F6RUR3	547	SUOX "Uncharacterized protein"	0.831	0.458	0.451	3.7e-55
DICTYBASE|DDB_G0278893	398	suox "sulfite oxidase" [Dictyo	0.837	0.635	0.429	6.1e-55
UNIPROTKB|P51687	545	SUOX "Sulfite oxidase, mitocho	0.831	0.460	0.447	7.8e-55
UNIPROTKB|I3LLT5	544	SUOX "Uncharacterized protein"	0.827	0.459	0.436	8e-53

TAIR|locus:2078683 SOX "sulfite oxidase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 213/270 (78%), Positives = 242/270 (89%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +AVW GAKLADVLELVGIP LT+ T  G +HVEFVS+D+CKEENGGPYKASI LSQATNP
Sbjct:   124 NAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYKASITLSQATNP 183

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EADVLLAYEMNGE LNRDHG+PLRVVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKM
Sbjct:   184 EADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKM 243

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             FPPSVNWDNINW SRRP MDFPVQ  ICS+EDV ++KPGK  + GYAVSGGGRGIERVDI
Sbjct:   244 FPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDI 303

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
             S+DGGKNWVEASR Q+ G  YI++H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQ
Sbjct:   304 SLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQ 363

Query:   273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
             PE+VE++WNLRGVLNTSWHRV +R+GHSN+
Sbjct:   364 PENVESVWNLRGVLNTSWHRVLLRLGHSNL 393

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006790 "sulfur compound metabolic process" evidence=ISS;IDA

GO:0008482 "sulfite oxidase activity" evidence=ISS;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0010477 "response to sulfur dioxide" evidence=IMP

GO:0015994 "chlorophyll metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

MGI|MGI:2446117 Suox "sulfite oxidase" [Mus musculus (taxid:10090)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 121/268 (45%), Positives = 168/268 (62%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G     S       HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   291 TARWAGARLCDVLAQAGHRLCDSEA-----HVCFEGLDS--DPTGTAYGASIPLARAMDP 343

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EA+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++ +EE    + ++DYK 
Sbjct:   344 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKG 403

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +N+     + + P+Q  I   +D  +++ G+  + GYA SGGGR + RVD+
Sbjct:   404 FSPSVDWDTVNFDLAPSIQELPIQSAITQPQDGAIVESGEVTIKGYAWSGGGRAVIRVDV 463

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             SVDGG  W EA    +   P  A       WAW  +++   +P   +   I+ KAVD + 
Sbjct:   464 SVDGGLTWQEAELEGEEQCPRKA-------WAWRIWQLKAQVPAEQKELNIICKAVDDSY 516

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct:   517 NVQPDTVAPIWNLRGVLSNAWHRVHVQV 544

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0007584 "response to nutrient" evidence=ISO

GO:0008482 "sulfite oxidase activity" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=ISO

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|F1PVD4 SUOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 122/268 (45%), Positives = 168/268 (62%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G  +    T +   HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   438 TARWAGARLCDVLAKAG--HQLCETEA---HVCFEGLDS--DPTGTAYGASIPLARAMDP 490

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EA+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++  EE    + ++DYK 
Sbjct:   491 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGKVSVEPEESYSHWQRRDYKG 550

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +++ S   + + PVQ  I   +D   ++ G+  + GYA SGGGR + RVD+
Sbjct:   551 FSPSVDWDTVDFDSAPSIQELPVQSAITEPKDGETVQSGEVTIKGYAWSGGGRAVVRVDV 610

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W  A    +   P  A       WAW  +++   +P   +   IV KAVD + 
Sbjct:   611 SLDGGLTWQVAELDGEEPHPRKA-------WAWRLWQLQASVPAGKKELNIVCKAVDDSY 663

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHRV VRV
Sbjct:   664 NVQPDTVAPIWNLRGVLSNAWHRVHVRV 691

GO:0005739 "mitochondrion" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|P07850 SUOX "Sulfite oxidase" [Gallus gallus (taxid:9031)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 119/262 (45%), Positives = 159/262 (60%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W GA L DVL   G P        GG+HV F  +D   +  G PY ASIP  +A +P
Sbjct:   211 TARWGGASLRDVLLHAGFPE----ELQGGEHVCFEGLDA--DPGGAPYGASIPYGRALSP 264

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
              ADVLLAYEMNG  L RDH +P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK 
Sbjct:   265 AADVLLAYEMNGTELPRDHRFPVRVVVPGVVGARSVKWLRRVAVSPDESPSRWQQNDYKG 324

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+
Sbjct:   325 FSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDV 384

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ--IVAKAVDTAAN 270
             S+DGG+ W + +R      P          WAW  +E+ + +   T+  IV KAVD++ N
Sbjct:   385 SLDGGRTW-KVARLMGDKAP------PGRAWAWALWELTVPVEAGTELEIVCKAVDSSYN 437

Query:   271 VQPESVETIWNLRGVLNTSWHR 292
             VQP+SV  IWNLRGVL+T+WHR
Sbjct:   438 VQPDSVAPIWNLRGVLSTAWHR 459

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA

GO:0008482 "sulfite oxidase activity" evidence=IEA

GO:0006790 "sulfur compound metabolic process" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

RGD|619994 Suox "sulfite oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 119/268 (44%), Positives = 168/268 (62%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G   L    R    HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   291 TARWAGARLCDVLAQAG-HRL----RETEAHVCFEGLDS--DPTGTAYGASIPLARAMDP 343

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             +A+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++ +EE    + ++DYK 
Sbjct:   344 QAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKG 403

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +++     + + P+Q  I   +D   ++ G+  + GYA SGGGR + RVD+
Sbjct:   404 FSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKGYAWSGGGRAVIRVDV 463

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W EA    +   P  A       WAW  +++   +P   +   I+ KAVD + 
Sbjct:   464 SMDGGLTWQEAELEGEEQHPRKA-------WAWRIWQLKAHVPAEQKELNIICKAVDDSY 516

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct:   517 NVQPDTVAPIWNLRGVLSNAWHRVHVQV 544

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006790 "sulfur compound metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IDA

GO:0008482 "sulfite oxidase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA;IDA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA;IDA

UNIPROTKB|Q07116 Suox "Sulfite oxidase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 119/268 (44%), Positives = 168/268 (62%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G   L    R    HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   291 TARWAGARLCDVLAQAG-HRL----RETEAHVCFEGLDS--DPTGTAYGASIPLARAMDP 343

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             +A+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++ +EE    + ++DYK 
Sbjct:   344 QAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVESEESYSHWQRRDYKG 403

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +++     + + P+Q  I   +D   ++ G+  + GYA SGGGR + RVD+
Sbjct:   404 FSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKGYAWSGGGRAVIRVDV 463

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W EA    +   P  A       WAW  +++   +P   +   I+ KAVD + 
Sbjct:   464 SMDGGLTWQEAELEGEEQHPRKA-------WAWRIWQLKAHVPAEQKELNIICKAVDDSY 516

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct:   517 NVQPDTVAPIWNLRGVLSNAWHRVHVQV 544

GO:0009055 "electron carrier activity" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

UNIPROTKB|F6RUR3 SUOX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 121/268 (45%), Positives = 166/268 (61%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G   L   T +   HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   292 TARWAGARLCDVLAQAGY-QLCE-TEA---HVCFEGLDS--DPTGTAYGASIPLARAMDP 344

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EA+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++  EE    + ++DYK 
Sbjct:   345 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGKVSVEPEESFSHWQRRDYKG 404

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +++ S   + + P+Q  I   ++   +  G+  V GYA SGGGR + RVD+
Sbjct:   405 FSPSVDWDTVDFDSAPSIQELPIQSAITQPKEGETIGSGEVTVKGYAWSGGGRAVVRVDV 464

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W  A   +  G     +  +   WAW  + +   +P   +   IV KAVD + 
Sbjct:   465 SLDGGLTWQVA---ELEG----EEQRARKAWAWRLWHLQAPLPAGIKELNIVCKAVDESY 517

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVLN +WHRV V V
Sbjct:   518 NVQPDTVAPIWNLRGVLNNAWHRVHVHV 545

GO:0005739 "mitochondrion" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

DICTYBASE|DDB_G0278893 suox "sulfite oxidase" [Dictyostelium discoideum (taxid:44689)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 119/277 (42%), Positives = 166/277 (59%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID-KCKEENGGPYKASIPLSQATN 91
             +A WSG +L D+LE   +   T     G  H  F  +D  C E+NG PY +SI + +A +
Sbjct:   125 TASWSGCRLKDILEYAKVFTKTE----GALHAVFWGLDFGCPEDNGKPYGSSITMEKAMD 180

Query:    92 PEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYK 151
              + DVLLAYEMNGEPL RDHGYPLRV+ PG+IGARSVKWLD + + ++E + FF ++DYK
Sbjct:   181 LDGDVLLAYEMNGEPLPRDHGYPLRVIAPGIIGARSVKWLDKVTVSSQESESFFQRRDYK 240

Query:   152 MFPPSVNWDNIN--WKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
             +F   V+W+N+   W     L +  +Q  IC +   N        ++GYA SGGGR +ER
Sbjct:   241 IFHNGVDWNNVEKYWDKTPSLQELSIQSAIC-IPAPNSTLYLPFTITGYATSGGGRKVER 299

Query:   210 VDISVDGGKNWVEASRY-QKTGIPYIADHMSSDKWAWVFFE-VIIDIP------HST-QI 260
             VDIS+DGG+ W  A    +  G+        +  W+WV F+  I  +P      H   ++
Sbjct:   300 VDISLDGGETWDYAELMGEDKGV-------CNKYWSWVLFKYTITQLPQLQNKDHQKIRL 352

Query:   261 VAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297
             V +A D+A+N QP+ V+ IWNLRGV+N  WH V + V
Sbjct:   353 VCRAWDSASNTQPKDVKDIWNLRGVMNNCWHFVDITV 389

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P51687 SUOX "Sulfite oxidase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 120/268 (44%), Positives = 165/268 (61%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G  +    T +   HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   290 TARWAGARLCDVLAQAG--HQLCETEA---HVCFEGLDS--DPTGTAYGASIPLARAMDP 342

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EA+VLLAYEMNG+PL RDHG+P+RVVVPGV+GAR VKWL  +++  EE    + ++DYK 
Sbjct:   343 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVQPEESYSHWQRRDYKG 402

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+W+ +++ S   + + PVQ  I    D   ++ G+  + GYA SGGGR + RVD+
Sbjct:   403 FSPSVDWETVDFDSAPSIQELPVQSAITEPRDGETVESGEVTIKGYAWSGGGRAVIRVDV 462

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W  A    +   P  A       WAW  +++   +P   +   IV KAVD   
Sbjct:   463 SLDGGLTWQVAKLDGEEQRPRKA-------WAWRLWQLKAPVPAGQKELNIVCKAVDDGY 515

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHRV V V
Sbjct:   516 NVQPDTVAPIWNLRGVLSNAWHRVHVYV 543

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0000098 "sulfur amino acid catabolic process" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008482 "sulfite oxidase activity" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0070221 "sulfide oxidation, using sulfide:quinone oxidoreductase" evidence=TAS

UNIPROTKB|I3LLT5 SUOX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 117/268 (43%), Positives = 163/268 (60%)

Query:    33 SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
             +A W+GA+L DVL   G   L+        HV F  +D   +  G  Y ASIPL++A +P
Sbjct:   290 TARWAGARLCDVLAQAG-HQLSEAEA----HVCFEGLDS--DPTGTAYGASIPLARAMDP 342

Query:    93 EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
             EA+VLLAYEMNG+PL RDHG+P+RVVVPGV GA  VKWL  +++  EE    + ++DYK 
Sbjct:   343 EAEVLLAYEMNGQPLPRDHGFPVRVVVPGV-GACHVKWLGKVSVEPEESHSHWQRRDYKG 401

Query:   153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
             F PSV+WD +++ S   + + PVQ  I   +D   ++  +  + GYA SGGGR + RVD+
Sbjct:   402 FSPSVDWDTVDFDSAPSIQELPVQSAITQPKDGETIESREVTIKGYAWSGGGRAVVRVDV 461

Query:   213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQ---IVAKAVDTAA 269
             S+DGG  W  A    +   P  A       WAW  +++   +P   +   I+ KAVD + 
Sbjct:   462 SLDGGLTWQAAELDGEEQRPRKA-------WAWRLWQLQFPVPAGKKELNIICKAVDDSY 514

Query:   270 NVQPESVETIWNLRGVLNTSWHRVQVRV 297
             NVQP++V  IWNLRGVL+ +WHR+ V V
Sbjct:   515 NVQPDTVAPIWNLRGVLSNAWHRIHVHV 542

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3.1	0.946
3rd Layer	1.8.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
PLN00177	393	PLN00177, PLN00177, sulfite oxidase; Provisional	0.0
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	1e-127
cd02110	317	cd02110, SO_family_Moco_dimer, Subgroup of sulfite	2e-88
cd02112	386	cd02112, eukary_NR_Moco, molybdopterin binding dom	3e-55
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	5e-48
pfam00174	144	pfam00174, Oxidored_molyb, Oxidoreductase molybdop	4e-40
pfam03404	130	pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimer	1e-39
cd00321	156	cd00321, SO_family_Moco, Sulfite oxidase (SO) fami	5e-37
cd02114	367	cd02114, bact_SorA_Moco, sulfite:cytochrome c oxid	1e-29
COG2041	271	COG2041, COG2041, Sulfite oxidase and related enzy	1e-23
cd02113	326	cd02113, bact_SoxC_Moco, bacterial SoxC is a membe	2e-22
cd02109	180	cd02109, arch_bact_SO_family_Moco, bacterial and a	4e-19
cd02108	185	cd02108, bact_SO_family_Moco, bacterial subgroup o	5e-14
PRK05363	280	PRK05363, PRK05363, TMAO/DMSO reductase; Reviewed	5e-06
cd02107	218	cd02107, YedY_like_Moco, YedY_like molybdopterin c	3e-05

>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional

 Score =  565 bits (1458), Expect = 0.0
 Identities = 233/270 (86%), Positives = 252/270 (93%)

Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +AVW GAKLADVLELVGIP LTS+T SGGKHVEFVS+DKCKEENGGPYKASIPLSQATNP
Sbjct: 124 NAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSVDKCKEENGGPYKASIPLSQATNP 183

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           EADVLLAYEMNGE LNRDHGYPLRVVVPGVIGARSVKWLD+INI+AEECQGFFMQKDYKM
Sbjct: 184 EADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKM 243

Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           FPPSVNWDNINW +RRP MDFPVQ  ICSLEDVN +KPGK  V+GYA+SGGGRGIERVDI
Sbjct: 244 FPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIKPGKVTVAGYALSGGGRGIERVDI 303

Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 272
           SVDGGK WVEASRYQK G+PYI+D +SSDKWAWV FE  +D+P ST+IVAKAVD+AANVQ
Sbjct: 304 SVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANVQ 363

Query: 273 PESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           PESVE+IWNLRG+LNTSWHRVQ+RVGHSNM
Sbjct: 364 PESVESIWNLRGILNTSWHRVQLRVGHSNM 393

Length = 393

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score =  367 bits (944), Expect = e-127
 Identities = 144/269 (53%), Positives = 173/269 (64%), Gaps = 15/269 (5%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W GA+L DVL   GIP   S    GG HV F  +D      G PY ASIPLS+A +PE
Sbjct: 107 AEWGGARLRDVLLDAGIPEDDS---QGGLHVHFEGLDVDPT--GTPYGASIPLSKALDPE 161

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
           ADVLLAYEMNG PL RDHG+PLRVVVPGV+GARSVKWLD I +  EE    + Q DYK F
Sbjct: 162 ADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGF 221

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK---PGKAKVSGYAVSGGGRGIERV 210
            PSV+WDN+++     + + PVQ  ICS      +    PGK  V GYA SGGGR I RV
Sbjct: 222 SPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAPVVTVPPGKITVKGYAWSGGGRKIVRV 281

Query: 211 DISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHS--TQIVAKAVDTA 268
           D+S+DGG+ W  A   Q+  +       S  KWAW  +E  + +P     +I+AKAVD+A
Sbjct: 282 DVSLDGGRTWKVAELEQEENVW-----PSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSA 336

Query: 269 ANVQPESVETIWNLRGVLNTSWHRVQVRV 297
            NVQPE+VE IWNLRGVLN +WHRV+V V
Sbjct: 337 YNVQPETVEPIWNLRGVLNNAWHRVKVVV 365

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|239028 cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

 Score =  266 bits (682), Expect = 2e-88
 Identities = 109/263 (41%), Positives = 143/263 (54%), Gaps = 22/263 (8%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W+G  L D+LE  G+       + G KHV F   D    E    Y  S+PLS+A +  
Sbjct: 76  ARWTGVPLKDLLEEAGV-------KPGAKHVLFEGADVPPGEKAADYTRSVPLSKALDD- 127

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
            D LLAYEMNGEPL  DHGYPLR+VVPG  GARSVKWL  I +  +   G++  +DY + 
Sbjct: 128 -DALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVP 186

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 213
           PP V+   +  K+RRP+ + PV+ VI S      +  G     G     GGRGI RV++S
Sbjct: 187 PPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVSGGRVEIGGVAWSGGRGIRRVEVS 244

Query: 214 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHS-TQIVAKAVDTAANVQ 272
           +DGG+ W EA            +   +   AW  +E+  D+P    ++VA+A D+  NVQ
Sbjct: 245 LDGGRTWQEARL----------EGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNVQ 294

Query: 273 PESVETIWNLRGVLNTSWHRVQV 295
           PE  E  WN  G  N  WHRVQV
Sbjct: 295 PERAEWNWNPGGYGNNHWHRVQV 317

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). . Length = 317

>gnl|CDD|239030 cd02112, eukary_NR_Moco, molybdopterin binding domain of eukaryotic nitrate reductase (NR)

 Score =  183 bits (466), Expect = 3e-55
 Identities = 92/277 (33%), Positives = 142/277 (51%), Gaps = 27/277 (9%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           ++W+G +L+D+L+  G  +     + G +HV F   D       G Y  SI LS A +P 
Sbjct: 122 SLWTGVRLSDLLDRCGPKS----PKGGARHVCFEGADDLLPGPNGKYGTSITLSWAMDPS 177

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
            DV+LAY+ NGE L+ DHG+P+R+++PG IG R VKWL  I +   E Q  +   D ++ 
Sbjct: 178 KDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHDNRVL 237

Query: 154 PPSVNWDNIN----W-KSRRPLMDFPVQCVICSLE-DVNVMKPGKA-----KVSGYAVSG 202
           P  V+ +  N    W K    + D  V   I +   D  +   G        + GYA +G
Sbjct: 238 PSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAG 297

Query: 203 GGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK-WAWVFFEV---IIDIPHST 258
           GGR + RV++S+D GK+W  AS      I Y  D     K W W F+ +   + ++  + 
Sbjct: 298 GGRRVTRVEVSLDDGKSWKLAS------IDYPEDPTKYGKCWCWCFWSLDVPLSELLAAK 351

Query: 259 QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 295
           +I  +A D + N QP  +   WN+ G++N  W RV++
Sbjct: 352 EICVRAWDESMNTQPRDM--TWNVMGMMNNCWFRVKI 386

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 386

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score =  171 bits (435), Expect = 5e-48
 Identities = 94/292 (32%), Positives = 136/292 (46%), Gaps = 55/292 (18%)

Query: 35  VWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEA 94
           VW G +L DVL   G+    S    G  +V F   +      G  Y  SI L +A +P  
Sbjct: 195 VWRGVRLRDVLRRCGV---MSRKG-GALNVCFEGAEDLPGGGGSKYGTSITLERAMDPAR 250

Query: 95  DVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 154
           DV+LAY  NGEPL  DHG+P+R+++PG IG R VKWL  I +   E   ++  +D ++ P
Sbjct: 251 DVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDNRVLP 310

Query: 155 PSVNWD------------------NINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVS 196
             V+ +                  NIN     P  D      I  +      +P    + 
Sbjct: 311 SHVDAELANAEGWWYKPEYIINELNINSVITTPAHD-----EILPINASTTQRP--YTMK 363

Query: 197 GYAVSGGGRGIERVDISVDGGKNWVEAS--------RYQKTGIPYIADHMSSDKWAWVFF 248
           GYA SGGGR + RV++S+DGG+ W            +Y K              W W F+
Sbjct: 364 GYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGK-------------YWCWCFW 410

Query: 249 EV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 297
            +   ++D+  + +I  +A D + N QPE  + IWNL G++N  W RV+V V
Sbjct: 411 SLDVEVLDLLGAKEIAVRAWDESMNTQPE--KLIWNLMGMMNNCWFRVKVNV 460

Length = 888

>gnl|CDD|215768 pfam00174, Oxidored_molyb, Oxidoreductase molybdopterin binding domain

 Score =  136 bits (345), Expect = 4e-40
 Identities = 52/113 (46%), Positives = 65/113 (57%), Gaps = 13/113 (11%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W+G  L D+LEL G        +   K+V F   D       G Y  S+PL  A +P 
Sbjct: 45  AEWTGVPLRDLLELAGP-------KPDAKYVLFEGAD----GGTGGYTTSLPLEDALDP- 92

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFM 146
            DVLLAYEMNGEPL  +HGYPLR+VVPG+ G +SVKWL  I +  E   G++ 
Sbjct: 93  -DVLLAYEMNGEPLPPEHGYPLRLVVPGLYGWKSVKWLTRIEVTDEPSDGYWE 144

This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity. Length = 144

>gnl|CDD|217537 pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimerisation domain

 Score =  135 bits (341), Expect = 1e-39
 Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 12/136 (8%)

Query: 167 RRPLMDFPVQCVICSLEDVNVMKPGKA--KVSGYAVSGGGRGIERVDISVDGGKNWVEAS 224
           R  + D  V   ICS E    +K G     + GYA SGGGR I RV++S+DGGK+W  A 
Sbjct: 1   RYAIYDLNVNSAICSPEHGERVKLGAGTYTIKGYAYSGGGRRITRVEVSLDGGKSWRLAD 60

Query: 225 RYQKTGIPYIADHMSSDKWAWVFFEVIIDIPH---STQIVAKAVDTAANVQPESVETIWN 281
              +    Y  +      + W F+ + + +     + +I+ +AVD + NVQPE  +  WN
Sbjct: 61  IDYEED-RYRYEKC----FCWCFWSLDVPVSELLGAKEIMVRAVDESGNVQPE--DMYWN 113

Query: 282 LRGVLNTSWHRVQVRV 297
           +RG++N +WHRV++ V
Sbjct: 114 VRGMMNNAWHRVKIHV 129

This domain is found in molybdopterin cofactor (Mo-co) oxidoreductases. It is involved in dimer formation, and has an Ig-fold structure. Length = 130

>gnl|CDD|238198 cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain

 Score =  128 bits (325), Expect = 5e-37
 Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 12/106 (11%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W+G  L D+LE  G        + G ++V F   D      G  Y  S+PL +A +P 
Sbjct: 63  AEWTGVPLRDLLEEAGP-------KPGARYVVFEGADDPG---GDGYTTSLPLEKALDP- 111

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE 139
            DVLLAYEMNGEPL  DHG+PLR+VVPG+ G +SVKWL  I +  E
Sbjct: 112 -DVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE 156

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 156

>gnl|CDD|239032 cd02114, bact_SorA_Moco, sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain

 Score =  115 bits (289), Expect = 1e-29
 Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 28/267 (10%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W+G  L  VL   G+       + G + V F  +D+   +    +  S+ +  A + E
Sbjct: 124 ARWAGVPLKAVLAKAGV-------QDGARQVAFRGLDQPVLDVTPDFVKSLDIDHALDGE 176

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
             V+LA+EMNGEPL   +GYPLR+VVPG      VK L  I +L +E  GF+  + Y++ 
Sbjct: 177 --VMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRI- 233

Query: 154 PPSVNWDNINWKSR----RPLMDFPVQCVICSLED-VNVMKPGKAKVSGYAVSGGGRGIE 208
            P      +   +      P+  F V+  I SLE+   V   G+  + G A   GG GI 
Sbjct: 234 -PDNADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVAPAGELALRGIAFD-GGSGIR 291

Query: 209 RVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTA 268
           RVD+S DGG +W +A+     G           ++++  +++ +D      +      T 
Sbjct: 292 RVDVSADGGDSWTQATLGPDLG-----------RFSFRGWKLTLDGVKKGPLTLMVRATN 340

Query: 269 ANVQPESVETIWNLRGVLNTSWHRVQV 295
            + Q + +   WN  G +     R ++
Sbjct: 341 NDGQTQPLRAPWNPGGYMRNVVERTRI 367

SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 367

>gnl|CDD|224952 COG2041, COG2041, Sulfite oxidase and related enzymes [General function prediction only]

 Score = 97.1 bits (242), Expect = 1e-23
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 15/123 (12%)

Query: 31  FLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQAT 90
            + A W+G  L ++L+  G        +   K+V F S+D      G  Y   +PL  A 
Sbjct: 134 MVDAPWTGVPLRELLDRAG-------PKDNAKYVMFHSLD------GPDYTTGLPLDDAL 180

Query: 91  NPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY 150
           +P    LLAY MNGEPL  ++G PLR+VVPG  G +S KWL  I +  +   G++ +  Y
Sbjct: 181 HPL--TLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGY 238

Query: 151 KMF 153
             +
Sbjct: 239 HEY 241

Length = 271

>gnl|CDD|239031 cd02113, bact_SoxC_Moco, bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 75/264 (28%), Positives = 115/264 (43%), Gaps = 47/264 (17%)

Query: 34  AVWSGAKLADVLELVGI-PNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           + W+G  L+ +LE  G+ P    +   G               +      SIPL +A   
Sbjct: 90  SEWTGVPLSTLLEEAGVKPGAKWLLAEGA--------------DAAAMTRSIPLEKA--- 132

Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD--- 149
             D L+AY  NGE L  ++GYPLR+VVPG  G  +VKWL  I +  +     +M ++   
Sbjct: 133 LDDALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQP----WMTREETS 188

Query: 150 -YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLE-DVNVMKPGKAKVSGYAVSGGGRGI 207
            Y    P       ++     +M+   + VI S      + +PG  ++SG A SG GR I
Sbjct: 189 KYTDLLPDGRARQFSF-----VME--AKSVITSPSGGQRLREPGFHEISGLAWSGRGR-I 240

Query: 208 ERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDT 267
            RVD+S DGG+ W +A R +   +P          W W     ++         ++A D 
Sbjct: 241 RRVDVSFDGGRTWQDA-RLEGPVLPKALTRFRLP-WKWDGRPAVLQ--------SRATDE 290

Query: 268 AANVQPESVETIWNLRGVLNTSWH 291
              VQP     +  +RG  N+ +H
Sbjct: 291 TGYVQPT-RAELRAVRGT-NSIYH 312

SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 326

>gnl|CDD|239027 cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 32  LSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATN 91
           L  VW G  L D+LE                 V   S D         Y  ++PL     
Sbjct: 67  LDVVWEGVSLKDLLEAARP-------DPEATFVMAHSYDG--------YTTNLPLEDLLR 111

Query: 92  PEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYK 151
              D LLA +M+GEPL  +HG P R+VVP +   +S KWL  I  L E+  GF+ ++ Y 
Sbjct: 112 E--DSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYH 169

Query: 152 M 152
            
Sbjct: 170 E 170

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown. Length = 180

>gnl|CDD|239026 cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 33  SAV--WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQAT 90
           SA+  W G  L  +LELVG   L        K+V F   D      G  Y  SI ++ A 
Sbjct: 67  SAIGKWGGVPLRTILELVGP--LPEA-----KYVVFKCADD--FAGGDRYYESIDMASAL 117

Query: 91  NPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILA 138
           +P+   LLAYEMNG+PL   +G PLR+ V   +G +  KW+  I ++ 
Sbjct: 118 HPQT--LLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVN 163

This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown. Length = 185

>gnl|CDD|235431 PRK05363, PRK05363, TMAO/DMSO reductase; Reviewed

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 36  WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENG-------GPYKASIPLSQ 88
           W G  LA +L+ V  P       S  K+V F ++   ++  G        PY   + L +
Sbjct: 107 WIGFPLAKLLKRVE-PT------SNAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDE 159

Query: 89  ATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVK 129
           A +P    LLA  + G+ L   +G P+R+VVP   G +S+K
Sbjct: 160 AMHPLT--LLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIK 198

Length = 280

>gnl|CDD|239025 cd02107, YedY_like_Moco, YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 20/115 (17%)

Query: 36  WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGG----------PYKASIP 85
           W G  LA +L             S  K+V F ++   KE+  G          PY   + 
Sbjct: 72  WVGFPLAALLARAE-------PTSEAKYVRFTTLLD-KEQMPGQSGLFGVLPWPYVEGLR 123

Query: 86  LSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEE 140
           L +A +P    LLA  + GE L + +G P+R+VVP   G +S+K +  I    E+
Sbjct: 124 LDEAMHPLT--LLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQ 176

Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
PLN00177	393	sulfite oxidase; Provisional	100.0
KOG0535	381	consensus Sulfite oxidase, molybdopterin-binding c	100.0
cd02111	365	eukary_SO_Moco molybdopterin binding domain of sul	100.0
cd02112	386	eukary_NR_Moco molybdopterin binding domain of euk	100.0
cd02114	367	bact_SorA_Moco sulfite:cytochrome c oxidoreductase	100.0
cd02110	317	SO_family_Moco_dimer Subgroup of sulfite oxidase (	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
cd02113	326	bact_SoxC_Moco bacterial SoxC is a member of the s	100.0
cd02107	218	YedY_like_Moco YedY_like molybdopterin cofactor (M	100.0
cd02108	185	bact_SO_family_Moco bacterial subgroup of the sulf	100.0
PF03404	131	Mo-co_dimer: Mo-co oxidoreductase dimerisation dom	100.0
PRK05363	319	TMAO/DMSO reductase; Reviewed	100.0
cd02109	180	arch_bact_SO_family_Moco bacterial and archael mem	100.0
PF00174	169	Oxidored_molyb: Oxidoreductase molybdopterin bindi	100.0
COG2041	271	Sulfite oxidase and related enzymes [General funct	100.0
cd00321	156	SO_family_Moco Sulfite oxidase (SO) family, molybd	99.97
COG3915	155	Uncharacterized protein conserved in bacteria [Fun	99.42
PF02012	12	BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe	95.97
PF13754	54	Big_3_4: Bacterial Ig-like domain (group 3)	91.8
PF15418	132	DUF4625: Domain of unknown function (DUF4625)	91.38
PF10648	88	Gmad2: Immunoglobulin-like domain of bacterial spo	91.23

>PLN00177 sulfite oxidase; Provisional

Probab=100.00  E-value=1.5e-85  Score=637.03  Aligned_cols=301  Identities=80%  Similarity=1.312  Sum_probs=264.7

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCc---cc-------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSF---LY-------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~---~~-------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+ +||+++++++|||+|  |..|..   ++       +|+|++|+||+|+|||++||++..+.....++++|.|+|
T Consensus        81 l~dL~-~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g  159 (393)
T PLN00177         81 MKDIR-KLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVS  159 (393)
T ss_pred             HHHHh-cCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEE
Confidence            57995 799999999999999  555542   11       799999999999999999999743222234789999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|.+...+..+|.+||||++||++++++||||+|||||||++|||||||||||+||++|||||++|+|++++++||||++
T Consensus       160 ~d~~~~~~~~~y~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~  239 (393)
T PLN00177        160 VDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQK  239 (393)
T ss_pred             eccccccCCCCcEEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceec
Confidence            98654444567999999999998756899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      +|++++|..+++...|.+..+|++|+++|+|+.|.+++.++.|+++|+|||||||+++|+|||||+|||+||++|+|..+
T Consensus       240 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~  319 (393)
T PLN00177        240 DYKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIKPGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQK  319 (393)
T ss_pred             ccccCCCCCCccccCccccCcceeecCCeEEecCCCCCcccCceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeeccc
Confidence            99999888777766787788999999999999999999999999999999999888899999999999999999999765


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEECCCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEeecCC
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM  302 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~~~~  302 (302)
                      ++.+..+.....++|+|++|+++|+.+|+++|+|||||++||+||+....+||++||+||+||+|+|+|.||||
T Consensus       320 ~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wN~~Gy~~n~~~rv~v~v~~~~~  393 (393)
T PLN00177        320 PGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANVQPESVESIWNLRGILNTSWHRVQLRVGHSNM  393 (393)
T ss_pred             cccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCCCCCCCCcCCcCCCCcccccEEEEEEEEeeccC
Confidence            32221112233468999999999988999999999999999999998767799999999999999999999998

>KOG0535 consensus Sulfite oxidase, molybdopterin-binding component [Energy production and conversion]

Probab=100.00  E-value=6.9e-86  Score=604.32  Aligned_cols=285  Identities=49%  Similarity=0.866  Sum_probs=263.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCccc----------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSFLY----------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~~----------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+ ++|..+++++|+|+|  |++|+++|          ||+|+.|+|++|.|||+++|+...    ..+++||.|+|
T Consensus        79 ~d~l~-s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~----~~~a~hV~Feg  153 (381)
T KOG0535|consen   79 LDDLK-SLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSR----ETKALHVCFEG  153 (381)
T ss_pred             HHHhh-hhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcc----cCcceEEEEec
Confidence            67884 678899999999999  77887765          999999999999999999999864    23678999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|.  ++.+..|.+||||++||+|+.|+||||+||||||+++||||||+||||..|+|+||||++|.|+++|+++|||++
T Consensus       154 ad~--d~tg~pYgaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qk  231 (381)
T KOG0535|consen  154 ADD--DPTGTPYGASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQK  231 (381)
T ss_pred             ccc--CCCCCcccccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhc
Confidence            986  334668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecC--CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEcc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP--GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRY  226 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~--G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~  226 (302)
                      ||+.++|.+++++.+|...++|++|||+|+||.|.++..|++  |+|+|+|||||||||+|+|||||+|||.||..|+|+
T Consensus       232 Dyk~f~psvd~d~~~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eld  311 (381)
T KOG0535|consen  232 DYKGFSPSVDWDEVDWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELD  311 (381)
T ss_pred             ccccCCCccCccccccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeecc
Confidence            999999999999999999999999999999999999999998  789999999999999999999999999999999998


Q ss_pred             CcCCCcccccCCCC-CceeeEEeEEEEECC---CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEee
Q 022157          227 QKTGIPYIADHMSS-DKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH  299 (302)
Q Consensus       227 ~~~~~~~~~~~~~~-~~~~W~~W~~~~~~~---g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~  299 (302)
                      +.+.+       .+ +.|||++|+.+++..   .+..|.|||+|++.|+|||....|||++|.+||+||||++.|.+
T Consensus       312 qee~~-------~~~~~w~W~lw~a~v~V~~~~~~~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV~~~v~~  381 (381)
T KOG0535|consen  312 QEEKP-------DKYKFWAWCLWSAEVPVSDGQKEKNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRVKVNVCK  381 (381)
T ss_pred             ccccC-------CccceEEEEEEEecccccccchhhhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEEEeeecC
Confidence            87652       22 589999999999983   35689999999999999999999999999999999999999864

>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO)

Probab=100.00  E-value=1.3e-79  Score=591.44  Aligned_cols=287  Identities=52%  Similarity=0.876  Sum_probs=250.7

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCc---c-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSF---L-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~---~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||++.||+++++++|+|+|  |..|..   +       .+|+|++|+||+|+|||++||+++..   ..++++|.|+|
T Consensus        62 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~---~~~a~~V~~~~  138 (365)
T cd02111          62 LEDLKSLFPKHEVTATLQCAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDD---SQGGLHVHFEG  138 (365)
T ss_pred             HHHHHhhCCcEEEEEEEEecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCcc---CCCceEEEEEe
Confidence            579965569999999999999  555532   1       17899999999999999999998621   01489999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|...  +..+|.+||||+++|++++|+||||+|||||||++|||||||||||+||++|||||++|+|++++++||||++
T Consensus       139 ~d~~~--~~~~y~~sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~  216 (365)
T cd02111         139 LDVDP--TGTPYGASIPLSKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQN  216 (365)
T ss_pred             cCCCC--CCCCeeeeeEHHHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceec
Confidence            98533  2347999999999999655899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCe---ecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNV---MKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR  225 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~---v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L  225 (302)
                      +|++++|..+++...|.+..+|++|+++|+|+.|.+++.   +..|.++|+|||||||+++|+|||||+|||+||++|+|
T Consensus       217 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l  296 (365)
T cd02111         217 DYKGFSPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAPVVTVPPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAEL  296 (365)
T ss_pred             ceeecCCCCCccccCccccCceeeeccCEEEecCCCCCeeeccCCceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCc
Confidence            999988777666666777789999999999999999994   55679999999999888899999999999999999999


Q ss_pred             cCcCCCcccccCCCCCceeeEEeEEEEEC-C-CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEE
Q 022157          226 YQKTGIPYIADHMSSDKWAWVFFEVIIDI-P-HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV  297 (302)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-~-g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v  297 (302)
                      ..+...     ..++++|||++|+++|++ + |+++|+|||||++||+||+.....||++||++|+||+|+|.+
T Consensus       297 ~~~~~~-----~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wn~~Gy~~n~~~~v~v~~  365 (365)
T cd02111         297 EQEENV-----WPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKVVV  365 (365)
T ss_pred             CCCCCc-----cccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCcCCCCCCCCCCccceecceEEEEEeeC
Confidence            877541     124457999999999998 4 589999999999999999987667999999999999999974

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR)

Probab=100.00  E-value=4.4e-79  Score=590.96  Aligned_cols=284  Identities=32%  Similarity=0.603  Sum_probs=242.5

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcC---cc-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLS---FL-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~---~~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||++.||+++++++|||+|  |..|.   ++       .+|+|++|+||+|+|||++||+++.+    .++++|.|+|
T Consensus        77 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~----~~a~~V~~~g  152 (386)
T cd02112          77 MDELVAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPK----GGARHVCFEG  152 (386)
T ss_pred             HHHHHhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCcc----CCceEEEEEc
Confidence            579965569999999999999  43332   11       16899999999999999999998621    1589999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|.........|.+||||+++|++++|+||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||+.
T Consensus       153 ~D~~~~~~~~~y~~slpl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~  232 (386)
T cd02112         153 ADDLLPGPNGKYGTSITLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFH  232 (386)
T ss_pred             cCcccccCCCCcEeeeEHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeec
Confidence            98533333457999999999998756899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCC---C-cCC-CCCccceeceEEEEeecCCCee-----c-CCcEEEEEEEEeCCCCCeEEEEEEcCCC
Q 022157          149 DYKMFPPSVNWDNI---N-WKS-RRPLMDFPVQCVICSLEDVNVM-----K-PGKAKVSGYAVSGGGRGIERVDISVDGG  217 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~---~-~~~-~~~i~~~~v~S~I~~P~~~~~v-----~-~G~v~i~G~A~sggg~~I~rVEVS~DgG  217 (302)
                      +|+++++..+++..   . |.+ ..+|++|+|+|+|+.|.+++++     + .|+++|+||||||+|++|+|||||+|||
T Consensus       233 ~y~~~~~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG  312 (386)
T cd02112         233 DNRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDG  312 (386)
T ss_pred             ccccCCcccCccccccccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCC
Confidence            99998766544322   2 333 3579999999999999999998     3 4589999999998878999999999999


Q ss_pred             CCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEE
Q 022157          218 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ  294 (302)
Q Consensus       218 ~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~  294 (302)
                      +||++|+|..+...     .+.+++|+|++|+++|++   +|+++|+|||||++||+||+...  ||++||+||+||+|+
T Consensus       313 ~tW~~A~L~~~~~~-----~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wN~~Gy~~n~~~~v~  385 (386)
T cd02112         313 KSWKLASIDYPEDP-----TKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNTQPRDMT--WNVMGMMNNCWFRVK  385 (386)
T ss_pred             CCceeCCCCCCCCc-----cccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCcCCCCCC--ccccceeeceEEEEc
Confidence            99999999766421     122348999999999976   48999999999999999999765  999999999999998


Q ss_pred             E
Q 022157          295 V  295 (302)
Q Consensus       295 v  295 (302)
                      |
T Consensus       386 v  386 (386)
T cd02112         386 I  386 (386)
T ss_pred             C
Confidence            5

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain

Probab=100.00  E-value=4.9e-77  Score=574.00  Aligned_cols=272  Identities=28%  Similarity=0.502  Sum_probs=235.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcC-ccc-------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEec
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLS-FLY-------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID   70 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~-~~~-------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D   70 (302)
                      |+||++.||+++++++|+|+|  |..+. ++.       +|++++|+||+|+|||++||+++       ++++|.|+|+|
T Consensus        81 l~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~-------~a~~V~f~g~D  153 (367)
T cd02114          81 LAELKRIEPRFEVVAVNQCSGNSRGFFQPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQD-------GARQVAFRGLD  153 (367)
T ss_pred             HHHHhhcCCceEEEEEEEECCCCcccccccccCCCcccceEEeeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecC
Confidence            579965569999999999999  33331 111       78999999999999999999986       68999999999


Q ss_pred             cccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecC
Q 022157           71 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY  150 (302)
Q Consensus        71 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y  150 (302)
                      .........|.+||||++++++  ++||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||+++|
T Consensus       154 ~~~~~~~~~y~~sipl~~a~~~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y  231 (367)
T cd02114         154 QPVLDVTPDFVKSLDIDHALDG--EVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAY  231 (367)
T ss_pred             CccccCCCCeEEeeeHHHhcCC--CeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeeccc
Confidence            5333233469999999999985  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCC--CCcCCCCCccceeceEEEEeecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccC
Q 022157          151 KMFPPSVNWDN--INWKSRRPLMDFPVQCVICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ  227 (302)
Q Consensus       151 ~~~~~~~~~~~--~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~  227 (302)
                      +++++......  ..+.+..+|++|+++|+|+.|.+++.+++| .++|+||||+| +++|+|||||+|||+||++|+|.+
T Consensus       232 ~~~~~~~~~~~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~  310 (367)
T cd02114         232 RIPDNADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVAPAGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGP  310 (367)
T ss_pred             ccCCCcccccCCcccccccceeeeeecceEEecCCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCC
Confidence            98644211111  113345689999999999999999999865 89999999997 579999999999999999999987


Q ss_pred             cCCCcccccCCCCCceeeEEeEEEEEC--CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022157          228 KTGIPYIADHMSSDKWAWVFFEVIIDI--PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV  295 (302)
Q Consensus       228 ~~~~~~~~~~~~~~~~~W~~W~~~~~~--~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v  295 (302)
                      +.+           +|+|++|+++|++  +|+++|+|||||++||+||+...  ||++||+||+||+|+|
T Consensus       311 ~~~-----------~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wn~~Gy~~n~~~~v~v  367 (367)
T cd02114         311 DLG-----------RFSFRGWKLTLDGVKKGPLTLMVRATNNDGQTQPLRAP--WNPGGYMRNVVERTRI  367 (367)
T ss_pred             CCC-----------CcEEEEEEEEEECCCCCcEEEEEEEEcCCCCCCCCCCc--cCcccEecceEEEEeC
Confidence            654           8999999999987  69999999999999999998655  9999999999999986

SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

Probab=100.00  E-value=2.5e-75  Score=553.27  Aligned_cols=272  Identities=43%  Similarity=0.705  Sum_probs=239.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCcc--------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEec
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSFL--------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID   70 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~--------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D   70 (302)
                      |+|| ++||+++++++|+|++  |..|.+.        .+|++++|+||+|+|||++||+++       ++++|.|+|+|
T Consensus        34 l~dL-~~lp~~~~~~~l~C~gn~r~~~~~~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~-------~a~~V~~~~~D  105 (317)
T cd02110          34 LDDL-KRLPSVEVVATLECSGNGRGGFIPVRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKP-------GAKHVLFEGAD  105 (317)
T ss_pred             HHHH-hhCCCeeEEEEEEcCCCCcccccccccCCccccCceeecEEECcCHHHHHHHhCCCC-------CCcEEEEEccC
Confidence            4788 4799999999999999  3433211        178999999999999999999986       58999999998


Q ss_pred             cccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecC
Q 022157           71 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY  150 (302)
Q Consensus        71 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y  150 (302)
                      ........+|.++|||++++++  ++||||+||||||+++||||||||+||+||++|||||++|+|++++++||||+++|
T Consensus       106 ~~~~~~~~~Y~~sipl~~~~~~--~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y  183 (317)
T cd02110         106 VPPGEKAADYTRSVPLSKALDD--DALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDY  183 (317)
T ss_pred             cccccCCCCeEEEEEHHHhcCC--CcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCCCCceEcccc
Confidence            6544445689999999999984  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecC-CcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcC
Q 022157          151 KMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP-GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKT  229 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~-G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~  229 (302)
                      +++++..+.  ..+.+..++++|+++|+|+.|.++..+.. +.++|+|+||+| +++|+|||||+|||+||++|+|.++.
T Consensus       184 ~~~~~~~~~--~~~~~~~~~~~~~~~s~I~~p~~~~~~~~~~~~~i~G~A~~g-~~~I~rVEvS~DgG~tW~~A~l~~~~  260 (317)
T cd02110         184 TVPPPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVSGGRVEIGGVAWSG-GRGIRRVEVSLDGGRTWQEARLEGPL  260 (317)
T ss_pred             ccCCCcccc--cCCCccceeEEEccCEEEeccCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEccCCc
Confidence            998765443  23445678999999999999999966665 489999999996 57999999999999999999998775


Q ss_pred             CCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 022157          230 GIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV  295 (302)
Q Consensus       230 ~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v  295 (302)
                      .          ++|+|++|+++|++ +|+|+|+|||+|++||+||+.....||++||++|+||+|+|
T Consensus       261 ~----------~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP~~~~~~~n~~g~~~n~~~~v~v  317 (317)
T cd02110         261 A----------GPRAWRQWELDWDLPPGEYELVARATDSTGNVQPERAEWNWNPGGYGNNHWHRVQV  317 (317)
T ss_pred             C----------CCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCCCcccccccCCCceeeeEEEEEC
Confidence            2          28999999999998 79999999999999999999877445579999999999986

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=2.1e-75  Score=613.50  Aligned_cols=287  Identities=32%  Similarity=0.640  Sum_probs=249.7

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCccc----------eecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSFLY----------HFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~~----------ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+ +||+++++++|+|+|  |.+++.++          +|||+.|+||+|+|||++||++..    ..++++|.|+|
T Consensus       150 l~dL~-~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~----~~~a~~V~f~g  224 (888)
T PLN02252        150 MDELV-RFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSR----KGGALNVCFEG  224 (888)
T ss_pred             HHHHh-hCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCC----CCCceEEEEEc
Confidence            58995 599999999999999  55543211          799999999999999999999842    12689999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|....+.+..|.+||||++||++.+|+||||+|||||||++|||||||||||+||++|||||++|+|+++++++||+.+
T Consensus       225 ~d~~~~~~~~~y~~sipl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~  304 (888)
T PLN02252        225 AEDLPGGGGSKYGTSITLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYR  304 (888)
T ss_pred             ccccccCCCCCceeeeeHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeec
Confidence            98644444457999999999999766899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCC---CcCCC--CCccceeceEEEEeecCCCeec------CCcEEEEEEEEeCCCCCeEEEEEEcCCC
Q 022157          149 DYKMFPPSVNWDNI---NWKSR--RPLMDFPVQCVICSLEDVNVMK------PGKAKVSGYAVSGGGRGIERVDISVDGG  217 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~---~~~~~--~~i~~~~v~S~I~~P~~~~~v~------~G~v~i~G~A~sggg~~I~rVEVS~DgG  217 (302)
                      +|+++|+.++.+..   .|...  .+|++|++||+|+.|.+++.|.      .++++|+||||||||++|+|||||+|||
T Consensus       305 d~r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG  384 (888)
T PLN02252        305 DNRVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGG  384 (888)
T ss_pred             ccccCCCcccccccccccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCC
Confidence            99998877654421   34432  3799999999999999999997      3479999999999899999999999999


Q ss_pred             CCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEE
Q 022157          218 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ  294 (302)
Q Consensus       218 ~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~  294 (302)
                      +||+.|+|..++.+     ..+++.|||++|+++|++   +|.++|+|||+|++||+||+...  ||++||+||+||+|+
T Consensus       385 ~tW~~a~l~~~~~~-----~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~--wN~~G~~nN~~~rv~  457 (888)
T PLN02252        385 ETWRLCDLDHPEKP-----TKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNTQPEKLI--WNLMGMMNNCWFRVK  457 (888)
T ss_pred             CcceeCccCCCCCc-----cccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCcCCCCCc--cCcCceEEeeEEEEE
Confidence            99999999877531     234456899999999975   68999999999999999998755  999999999999999


Q ss_pred             EEEee
Q 022157          295 VRVGH  299 (302)
Q Consensus       295 v~v~~  299 (302)
                      |+|.+
T Consensus       458 v~v~~  462 (888)
T PLN02252        458 VNVCK  462 (888)
T ss_pred             EEEee
Confidence            99954

>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=100.00  E-value=1.7e-74  Score=547.78  Aligned_cols=261  Identities=30%  Similarity=0.421  Sum_probs=231.8

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcCcc---------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEe
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLSFL---------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSI   69 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~~~---------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~   69 (302)
                      |+||+ +||+++++++|+|+|  |..+...         .+|+|++|+||+|+|||++||+++       ++++|.|+|+
T Consensus        47 l~dL~-~~p~~~~~~~l~C~gn~r~~~~~~~~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~-------~a~~V~~~g~  118 (326)
T cd02113          47 MDDLK-RFPSVSRIYFLECSGNGGTGWRGAPLPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKP-------GAKWLLAEGA  118 (326)
T ss_pred             HHHHh-cCCCEEEEEEEEecCCCcccccccccccccccccceeEEEEEeeEHHHHHHhcCCCC-------CceEEEEEec
Confidence            57895 799999999999998  3444321         189999999999999999999986       6899999999


Q ss_pred             ccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec
Q 022157           70 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD  149 (302)
Q Consensus        70 D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~  149 (302)
                      |      +..|.+||||++++ +  ++||||+|||||||.+|||||||||||+||++|||||++|+|++++++++||+.+
T Consensus       119 D------~~~y~~sipl~~a~-~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~  189 (326)
T cd02113         119 D------AAAMTRSIPLEKAL-D--DALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSK  189 (326)
T ss_pred             C------CCceeEEeeHHHhC-c--CcEEEEeeCCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhcc
Confidence            8      23599999999999 3  8999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeec-CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          150 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK-PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       150 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~-~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      |+..++...       ...+++.|+++|+|+.|.+++.++ .|+++|+||||||++ +|+|||||+|||+||++|+|..+
T Consensus       190 Y~~~~~~~~-------~~~~~~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~  261 (326)
T cd02113         190 YTDLLPDGR-------ARQFSFVMEAKSVITSPSGGQRLREPGFHEISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGP  261 (326)
T ss_pred             ccccCCCCc-------ccccceEecccEEEecCCCCCEecCCCeEEEEEEEECCCC-CEEEEEEEcCCCCCceECccCCC
Confidence            998654321       123667899999999999999996 568999999999754 79999999999999999999888


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCccccccccc----CCCCceEEEEEEEe
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRG----VLNTSWHRVQVRVG  298 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G----~~~n~~h~v~v~v~  298 (302)
                      ..           +|+|++|++.|.+ .|.++|+|||||++||+||+.. .+||.+|    |++|++|+++|.|.
T Consensus       262 ~~-----------~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~QP~~~-~~~n~~g~n~gy~~n~~~~~~v~~~  324 (326)
T cd02113         262 VL-----------PKALTRFRLPWKWDGRPAVLQSRATDETGYVQPTRA-ELRAVRGTNSIYHNNAIQSWRVDED  324 (326)
T ss_pred             CC-----------CCceEEEeEEEEcCCCeEEEEEEEEcCCCCCCCCCc-ccchhcccccceecceEEEEEEEcC
Confidence            65           8999999999998 5679999999999999999864 4567666    99999999999985

SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=100.00  E-value=3.2e-44  Score=322.12  Aligned_cols=156  Identities=26%  Similarity=0.329  Sum_probs=134.4

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEecccc---cc--
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE--   75 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~---~~--   75 (302)
                      |+||+++||+++++++|||+++|++       +++|+||+|++||++||+++       ++++|.|+|+|...   +.  
T Consensus        44 l~eL~~~lP~~~~~~~l~Cv~gWs~-------~a~W~GV~L~dlLe~ag~~~-------~A~~V~f~~~d~~~~~~g~~g  109 (218)
T cd02107          44 IDDLMKTFPLEERIYRFRCVEGWSM-------VVPWVGFPLAALLARAEPTS-------EAKYVRFTTLLDKEQMPGQSG  109 (218)
T ss_pred             HHHHHhcCCCeEEEEEEEEeCCCcc-------eeEEEeeEHHHHHHHcCCCC-------CCCEEEEEecCccccccCCcc
Confidence            5789644999999999999998863       79999999999999999987       68999999997311   11  


Q ss_pred             ----CCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec--
Q 022157           76 ----NGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD--  149 (302)
Q Consensus        76 ----~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~--  149 (302)
                          ...+|.++|||++||++  ++||||+|||||||++|||||||||||+||+||||||++|+|++++++||||+++  
T Consensus       110 ~~~~~~~~Y~~slpl~~Al~~--~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~~~  187 (218)
T cd02107         110 LFGVLPWPYVEGLRLDEAMHP--LTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAAPD  187 (218)
T ss_pred             ccccccCCcccceeHHHhhCc--ccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccCcc
Confidence                12259999999999996  7999999999999999999999999999999999999999999999999999995  


Q ss_pred             ----CccCCCCCCCCCCCcCCCCCccceeceEEEEe
Q 022157          150 ----YKMFPPSVNWDNINWKSRRPLMDFPVQCVICS  181 (302)
Q Consensus       150 ----Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~  181 (302)
                          |+..++..+         .|+++|.++|.|..
T Consensus       188 ~~~~y~~~~~~~~---------~~~~~~~~~~~i~~  214 (218)
T cd02107         188 EYGFYANVNPSVD---------HPRWSQATERRIGE  214 (218)
T ss_pred             cccccccCCCCCC---------CCccccceeeeecc
Confidence                444443321         57899999999973

Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=100.00  E-value=1.8e-39  Score=286.38  Aligned_cols=134  Identities=32%  Similarity=0.546  Sum_probs=121.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCe
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPY   80 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y   80 (302)
                      ++|| ++||+++++++++|+++|+       ..++|+||+|+|||++||+++       ++++|.|+|+|..  .+..+|
T Consensus        45 l~dL-~~lp~~~~~~~~~Cv~gws-------~~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~d~~--~~~~~Y  107 (185)
T cd02108          45 LEEL-RALPQRTQITRHICVEGWS-------AIGKWGGVPLRTILELVGPLP-------EAKYVVFKCADDF--AGGDRY  107 (185)
T ss_pred             HHHH-hCCCCEEEEEEEEEcCCCc-------eEEEEEEEEHHHHHHHhCCCC-------CCcEEEEEecCcC--CCCCCe
Confidence            4788 4899999999999999765       257999999999999999986       5899999999743  223489


Q ss_pred             EEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccC------CceeeecCccC
Q 022157           81 KASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQ------GFFMQKDYKMF  153 (302)
Q Consensus        81 ~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~------g~w~~~~Y~~~  153 (302)
                      .++|||++++++  ++||||+||||||+.+|||||||||||+||+||||||++|+|++++.+      ||||++||+.+
T Consensus       108 ~~sipl~~~~~~--~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~~~~~~~g~We~~gy~~~  184 (185)
T cd02108         108 YESIDMASALHP--QTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVNDLPGIGGGKGGYWEDQGYNWF  184 (185)
T ss_pred             EEEEEHHHhcCC--CcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEeccCccccCCCCccccCCcccc
Confidence            999999999986  799999999999999999999999999999999999999999999999      99999999875

This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT)

Probab=100.00  E-value=4.4e-39  Score=269.44  Aligned_cols=125  Identities=42%  Similarity=0.756  Sum_probs=94.9

Q ss_pred             CCccceeceEEEEeecCCCeecCC--cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceee
Q 022157          168 RPLMDFPVQCVICSLEDVNVMKPG--KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW  245 (302)
Q Consensus       168 ~~i~~~~v~S~I~~P~~~~~v~~G--~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W  245 (302)
                      .+|++|+|||+|+.|.+++.|+.|  +++|+||||+|++++|+|||||+|||+||++|+|..+..+...    ...+|+|
T Consensus         2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~----g~~~~aW   77 (131)
T PF03404_consen    2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRY----GEARWAW   77 (131)
T ss_dssp             CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHH----TS-TTS-
T ss_pred             cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccc----cccCccc
Confidence            478999999999999999999987  8999999999988899999999999999999999988541000    0127999


Q ss_pred             EEeEEEEEC-C--CccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 022157          246 VFFEVIIDI-P--HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG  298 (302)
Q Consensus       246 ~~W~~~~~~-~--g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~  298 (302)
                      ++|+|+|++ +  |.++|+|||+|++|++||+...  ||++||++|+||+|+|+|.
T Consensus        78 ~~W~~~~~~~~~~G~~~i~~RA~D~~G~~QP~~~~--wN~~G~~~n~~~~v~v~v~  131 (131)
T PF03404_consen   78 RLWEYDWPPPSLPGEYTIMVRATDESGNVQPEEPI--WNPRGYMNNGWHRVKVTVE  131 (131)
T ss_dssp             EEEEEEEEECSHCCEEEEEEEEEETTS-B--SCHH--CHTT-SS--SSEEEEEEE-
T ss_pred             ceeeeccCcCccccceEEEEEEeecccccCCCccc--ccccCceeccEEEEEEEEC
Confidence            999999998 4  8899999999999999999554  9999999999999999984

MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....

>PRK05363 TMAO/DMSO reductase; Reviewed

Probab=100.00  E-value=7.6e-39  Score=300.19  Aligned_cols=136  Identities=26%  Similarity=0.308  Sum_probs=122.8

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEecccc---cc--
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE--   75 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~---~~--   75 (302)
                      ++||+++||+++++++|+|+++|++       ++.|+||+|+|||+++|+++       +|++|.|++.|...   ++  
T Consensus       118 ldDL~~~~P~~eri~~l~CVegWs~-------~~~W~GvpL~dLLe~agp~~-------~AkyV~f~s~~d~~~~~g~~~  183 (319)
T PRK05363        118 IDDLLKLFPLEERIYRLRCVEAWSM-------VIPWIGFPLAKLLKRVEPTS-------NAKYVAFETLYDPEQMPGQRS  183 (319)
T ss_pred             HHHHHhcCCCeEEEEEEEEcCCCce-------eeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecCccccccCCcc
Confidence            5799766999999999999998875       79999999999999999987       69999999985321   21  


Q ss_pred             --CCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCcc
Q 022157           76 --NGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM  152 (302)
Q Consensus        76 --~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~  152 (302)
                        .+.+|.++|||++||++  ++||||+|||||||++|||||||||||+||+||||||++|+|++++.+||||+.+|+-
T Consensus       184 ~~~~~pY~~~LpL~eAm~p--~tlLA~~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~~~~~e  260 (319)
T PRK05363        184 RFLDWPYVEGLRLDEAMHP--LTLLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNLLAPNE  260 (319)
T ss_pred             cccCCCeeccccHHHHhCc--cceehhhhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhccCccc
Confidence              12269999999999997  7999999999999999999999999999999999999999999999999999998875

>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=100.00  E-value=2.3e-38  Score=278.37  Aligned_cols=130  Identities=34%  Similarity=0.518  Sum_probs=121.6

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCe
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPY   80 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y   80 (302)
                      ++|| ++||+++++++++|++.|.      +++++|+||+|+|||+++|+++       ++++|.|+|+|        +|
T Consensus        43 l~dL-~~lp~~~~~~~~~C~~~w~------~~~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~D--------gY  100 (180)
T cd02109          43 YEDL-LALPQTEYTADFHCVTGWS------KLDVVWEGVSLKDLLEAARPDP-------EATFVMAHSYD--------GY  100 (180)
T ss_pred             HHHH-hCCCCEEEEEEEEecCCCc------ccCcEEEeeEHHHHHHHcCCCC-------CCeEEEEEecC--------Cc
Confidence            4688 5899999999999999764      3689999999999999999986       58999999998        89


Q ss_pred             EEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCccCC
Q 022157           81 KASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP  154 (302)
Q Consensus        81 ~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~~~  154 (302)
                      ..+||+++++++  ++||||+||||||+.+||||||||+||+||+||+|||++|+|++++.+|||+++||+...
T Consensus       101 ~~~ipl~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~  172 (180)
T cd02109         101 TTNLPLEDLLRE--DSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERG  172 (180)
T ss_pred             eEEeEHHHhcCC--CeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCC
Confidence            999999999985  899999999999999999999999999999999999999999999999999999999863

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity

Probab=100.00  E-value=3.2e-36  Score=262.12  Aligned_cols=133  Identities=40%  Similarity=0.661  Sum_probs=108.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC------CCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccc
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR------TNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKE   74 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr------~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~   74 (302)
                      |+||+ +||+++++++++|+++      |..+   +|++++|+||+|+|||++||+++       ++++|.|+|.|....
T Consensus        31 l~dL~-~lp~~~~~~~~~c~~~~~~~~~w~~~---~i~~~~~~GV~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~   99 (169)
T PF00174_consen   31 LADLK-ALPQVTQTVTLHCVGNRRAGFPWSAG---AIGNAEWTGVPLSDLLEKAGIKP-------DAKYVVFTGADGYPM   99 (169)
T ss_dssp             HHHHH-HS-EEEEEEEEEETTTTHHSHHCCST---SEEEEEEEEEEHHHHHHHHTB-T-------T-EEEEEEESCETTC
T ss_pred             HHHHh-CCcCeEEEEEEEecCCCccCcccccc---ceeeeeeEEEcHHHHHHHcCCCC-------CccEEEEEEcCCCcc
Confidence            57895 9999999999999996      5432   46799999999999999999986       589999999983222


Q ss_pred             cCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceee
Q 022157           75 ENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQ  147 (302)
Q Consensus        75 ~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~  147 (302)
                       ...+|.++||++++++.  ++||||+||||||+.+||+|+|||+|+.+|++|||||++|+|++++.+||||+
T Consensus       100 -~~~gY~~~l~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we~  169 (169)
T PF00174_consen  100 -THDGYSVSLPLEDALEE--DVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWEE  169 (169)
T ss_dssp             -TTSSEEEEEEHHHHHST--CSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred             -cCCCeEEEEEHHHhhcC--CeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCccC
Confidence             33589999999999985  89999999999999999999999999999999999999999999999999984

These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....

>COG2041 Sulfite oxidase and related enzymes [General function prediction only]

Probab=100.00  E-value=7.2e-34  Score=264.31  Aligned_cols=129  Identities=36%  Similarity=0.629  Sum_probs=121.1

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCC-
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGP-   79 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~-   79 (302)
                      ++||+. ||+.+++.+++|+++|++-      -..|+||+|++||+++|+++       +|++|.|++.|        + 
T Consensus       111 ~~dl~~-~p~~~~~~~~~Cv~~Ws~~------~~~W~Gv~l~~lL~~~~p~~-------~A~~V~f~~~d--------~~  168 (271)
T COG2041         111 YEDLLA-LPLEERIYTFHCVEGWSMV------DAPWTGVPLRELLDRAGPKD-------NAKYVMFHSLD--------GP  168 (271)
T ss_pred             HHHHhh-CCcccEEEEEEEecCceEe------ecceeeeeHHHHHHHhCcCC-------CCeEEEEEccC--------cc
Confidence            478965 9999999999999988762      23899999999999999998       69999999998        5 


Q ss_pred             -eEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecCccC
Q 022157           80 -YKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF  153 (302)
Q Consensus        80 -Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y~~~  153 (302)
                       |++++||+++|++  ++||||+|||+|||++||||+|||||++||+|++|||++|+|++++..+||+..+|+.+
T Consensus       169 ~y~~~l~l~~a~~p--~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~  241 (271)
T COG2041         169 DYTTGLPLDDALHP--LTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEY  241 (271)
T ss_pred             ccccCCCHHHhcCc--HhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCcccc
Confidence             9999999999997  79999999999999999999999999999999999999999999999999999999875

>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain

Probab=99.97  E-value=2.7e-31  Score=228.48  Aligned_cols=123  Identities=45%  Similarity=0.733  Sum_probs=107.6

Q ss_pred             ChhhhhhCCCeEEEEEEEecC-CCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCC
Q 022157            1 MCHLYLNNPKEYINLLLFCAV-RTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGP   79 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g-r~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~   79 (302)
                      ++|| ++||+++++++++|++ +|...   .+++++|+||+|++||+++|+++       ++++|.|+|.|..   ++++
T Consensus        33 l~eL-~~lp~~~~~~~~~c~~n~~~~~---~~~~~~~~Gv~L~~lL~~ag~~~-------~~~~v~~~a~d~~---~~dg   98 (156)
T cd00321          33 LDDL-KALPQVEVIATLHCVGNRWGGG---AVSNAEWTGVPLRDLLEEAGPKP-------GARYVVFEGADDP---GGDG   98 (156)
T ss_pred             HHHH-hcCCCEEEEEEEEECCCCCCCc---cEeccEEEEEEHHHHHHHcCCCC-------CCeEEEEEeeCCC---CCCC
Confidence            4688 5799999999999999 33221   24689999999999999999986       5899999999421   2238


Q ss_pred             eEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEecc
Q 022157           80 YKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE  139 (302)
Q Consensus        80 Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~  139 (302)
                      |..+||+++++++  ++||||+||||||+.+||+|+|||+|+.||+||+|||++|||+++
T Consensus        99 Y~~~i~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK~v~~Iev~~~  156 (156)
T cd00321          99 YTTSLPLEKALDP--DVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE  156 (156)
T ss_pred             EEEEEEHHHhhCC--CCEEEeeeCCeECchhhCCceEEEcCCceeeEcceeeeEEEEEcC
Confidence            9999999999984  899999999999999999999999999999999999999999863

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.42  E-value=4.8e-13  Score=110.98  Aligned_cols=105  Identities=23%  Similarity=0.269  Sum_probs=91.1

Q ss_pred             hhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccccCCCCeE
Q 022157            2 CHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYK   81 (302)
Q Consensus         2 ~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~~~~~~Y~   81 (302)
                      .|| .++|.+++...+....          |+++|+||+|++||+..|.+         .+.|.|.+.+        +|.
T Consensus        41 qeL-eal~~~T~ete~Pw~~----------gn~rf~Gvsls~Ll~~l~ak---------~tslt~iALN--------dY~   92 (155)
T COG3915          41 QEL-EALPDETIETETPWTQ----------GNTRFKGVSLSALLAWLGAK---------QTSLTVIALN--------DYW   92 (155)
T ss_pred             HHH-hcCCcceEEEecCccc----------CceeecceeHHHHHHHhhcc---------CcceEEEEec--------cee
Confidence            466 5799999888887654          58999999999999999965         5678899987        899


Q ss_pred             EEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCc---------ccccceeeeeeeEE
Q 022157           82 ASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGV---------IGARSVKWLDTINI  136 (302)
Q Consensus        82 ~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~---------~G~~~vKwl~~Ie~  136 (302)
                      +.||++|+-..  +.+|||++||.++...|-+|+.+|.|=.         |-.+.|-.+++|++
T Consensus        93 a~Ip~sDi~ky--npIlA~~~nGn~M~IRerGPl~~IYplds~peL~nqvyysr~vWQissi~i  154 (155)
T COG3915          93 AEIPYSDIEKY--NPILAIQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYYSRMVWQISSIEI  154 (155)
T ss_pred             ccCcHHHhhhc--ccEEEEEeCCcEEEEeccCceEEEeecCCChhhhhhhhhhhheeeeeeEEe
Confidence            99999998876  7999999999999999999999999943         66778888888876

>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes

Probab=95.97  E-value=0.005  Score=30.79  Aligned_cols=11  Identities=55%  Similarity=1.114  Sum_probs=8.8

Q ss_pred             EEcCCCCCcEE
Q 022157          212 ISVDGGKNWVE  222 (302)
Q Consensus       212 VS~DgG~tW~~  222 (302)
                      .|.|+|+||+.
T Consensus         2 ~S~D~G~TW~~   12 (12)
T PF02012_consen    2 YSTDGGKTWKK   12 (12)
T ss_dssp             EESSTTSS-EE
T ss_pred             EeCCCcccCcC
Confidence            69999999974

The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....

>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)

Probab=91.80  E-value=0.2  Score=35.42  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             EeEEEEEC--CCccEEEEEEEeCCCCCCCC
Q 022157          247 FFEVIIDI--PHSTQIVAKAVDTAANVQPE  274 (302)
Q Consensus       247 ~W~~~~~~--~g~~~i~~RA~D~~Gn~QP~  274 (302)
                      .|++.++.  .|.|.|.++|+|.+||+...
T Consensus        13 ~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~   42 (54)
T PF13754_consen   13 NWSFTVPALADGTYTITVTATDAAGNTSTS   42 (54)
T ss_pred             cEEEeCCCCCCccEEEEEEEEeCCCCCCCc
Confidence            34455554  68999999999999999875

>PF15418 DUF4625: Domain of unknown function (DUF4625)

Probab=91.38  E-value=1.8  Score=36.45  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             eecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEc--------CC------CCCcEEeEccCcCCCcccccCCCCCceee
Q 022157          181 SLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISV--------DG------GKNWVEASRYQKTGIPYIADHMSSDKWAW  245 (302)
Q Consensus       181 ~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~--------Dg------G~tW~~A~L~~~~~~~~~~~~~~~~~~~W  245 (302)
                      .|.+.+++..| .+.++.-.-+  ...|.+++|.+        .+      .+.|.--+.-.-.+         +..-.=
T Consensus        25 ~p~~~~~~~~G~~ihfe~~i~d--~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~---------g~~~~~   93 (132)
T PF15418_consen   25 FPENCKVATRGDDIHFEADISD--NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYG---------GKKNYD   93 (132)
T ss_pred             CCCCCeEEecCCcEEEEEEEEc--ccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccC---------CcccEe
Confidence            68889999999 6899976655  45899999988        33      45576654321111         011122


Q ss_pred             EEeEEEEEC---CCccEEEEEEEeCCCCCCCC
Q 022157          246 VFFEVIIDI---PHSTQIVAKAVDTAANVQPE  274 (302)
Q Consensus       246 ~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~  274 (302)
                      ..+.+++|.   +|.|.++.|.+|.+||++-.
T Consensus        94 ~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~  125 (132)
T PF15418_consen   94 FHEHIDIPADAPAGDYHFMITVTDAAGNQTEE  125 (132)
T ss_pred             EEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence            356777775   79999999999999998753

>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins

Probab=91.23  E-value=2.6  Score=32.84  Aligned_cols=78  Identities=17%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             EEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC---
Q 022157          178 VICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---  254 (302)
Q Consensus       178 ~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~---  254 (302)
                      .|+.|..|+.|.. +++|+|.|-.-  .+-..++|.-++|+.=.+.......+           .-+|..|+.++.+   
T Consensus         4 ~V~~P~pg~~V~s-p~~V~G~A~~F--Egtv~~rv~D~~g~vl~e~~~~a~~g-----------~~~~g~F~~tv~~~~~   69 (88)
T PF10648_consen    4 WVTAPAPGDTVSS-PVKVSGKARVF--EGTVNIRVRDGHGEVLAEGFVTATGG-----------APSWGPFEGTVSFPPP   69 (88)
T ss_pred             EEcCCCCcCCcCC-CEEEEEEEEEe--eeEEEEEEEcCCCcEEEEeeEEeccC-----------CCcccceEEEEEeCCC
Confidence            4788999998877 79999999875  47888888877775442322222122           4589999999987   


Q ss_pred             -CCccEEEEEEEeCCC
Q 022157          255 -PHSTQIVAKAVDTAA  269 (302)
Q Consensus       255 -~g~~~i~~RA~D~~G  269 (302)
                       ++.++|.+...|..+
T Consensus        70 ~~~~g~l~v~~~s~~d   85 (88)
T PF10648_consen   70 PPGKGTLEVFEDSAKD   85 (88)
T ss_pred             CCCceEEEEEEeCCCC
Confidence             466788888777654

It is predicted to contain an immunoglobulin-like all-beta fold.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1ogp_A	393	The Crystal Structure Of Plant Sulfite Oxidase Prov		1e-130
1sox_A	466	Sulfite Oxidase From Chicken Liver Length = 466		3e-53
2a9b_A	372	Crystal Structure Of R138q Mutant Of Recombinant Su		3e-53
2a9d_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		3e-53
2a99_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		3e-53
3hbq_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		5e-53
3hbp_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		5e-53
3hc2_A	466	Crystal Structure Of Chicken Sulfite Oxidase Mutant		8e-53
3r18_A	466	Chicken Sulfite Oxidase Double Mutant With Altered		3e-51
3r19_A	466	Chicken Sulfite Oxidase Triple Mutant With Altered		5e-51
2bii_A	424	Crystal Structure Of Nitrate-Reducing Fragment Of A		1e-30
2bih_A	474	Crystal Structure Of The Molybdenum-containing Nitr		1e-30
2ca3_A	373	Sulfite Dehydrogenase From Starkeya Novella R55m Mu		3e-18
2blf_A	373	Sulfite Dehydrogenase From Starkeya Novella Length		4e-18
2ca4_A	373	Sulfite Dehydrogenase From Starkeya Novella Mutant		4e-18
2c9x_A	373	Sulfite Dehydrogenase From Starkeya Novella Y236f M		9e-18
2xts_A	390	Crystal Structure Of The Sulfane Dehydrogenase Soxc		8e-16

>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation In Plants And Animals Length = 393

Iteration: 1
 Score =  462 bits (1188), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/306 (72%), Positives = 254/306 (83%), Gaps = 12/306 (3%)
Query: 9   PKEYINLLLFCA--VRTNLSFLYHFL----------SAVWSGAKLADVLELVGIPNLTSV 56
           PK  +   L CA   RT +S + +            +AVW GAKLADVLELVGIP LT+ 
Sbjct: 88  PKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTAS 147
Query: 57  TRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 116
           T  G +HVEFVS+D+CKEENGGPYKASI LSQATNPEADVLLAYEMNGE LNRDHG+PLR
Sbjct: 148 TNLGARHVEFVSVDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLR 207
Query: 117 VVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQ 176
           VVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKMFPPSVNWDNINW SRRP MDFPVQ
Sbjct: 208 VVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQ 267
Query: 177 CVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIAD 236
             ICS+EDV ++KPGK  + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G  YI++
Sbjct: 268 SAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISE 327
Query: 237 HMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVR 296
           H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWHRV +R
Sbjct: 328 HSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLR 387
Query: 297 VGHSNM 302
           +GHSN+
Sbjct: 388 LGHSNL 393

>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver Length = 466

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F P V+WD +++++  
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 453
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464

>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 73  LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F P V+WD +++++  
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370

>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase With Arg At Residue 161 Length = 372

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 73  LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F P V+WD +++++  
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370

>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 73  LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 132
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 133 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 186
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F P V+WD +++++  
Sbjct: 187 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAP 246
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 247 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 306
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 307 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 359
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 360 STAWHRVRVSV 370

>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase Mutant Cys 185 Ala Length = 466

Iteration: 1
 Score =  204 bits (519), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 162/267 (60%), Gaps = 15/267 (5%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W GA+L DVL   G P        G  HV F  +D   +  G PY ASIP  +A +P
Sbjct: 211 TARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSP 264
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
            ADVLLAYEMNG  L RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK 
Sbjct: 265 AADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKG 324
Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           F P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+
Sbjct: 325 FSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDV 384
Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAAN 270
           S+DGG+ W  A        P  A       WAW  +E+ + +   T  +IV KAVD++ N
Sbjct: 385 SLDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYN 437
Query: 271 VQPESVETIWNLRGVLNTSWHRVQVRV 297
           VQP+SV  IWNLRGVL+T+WHRV+V V
Sbjct: 438 VQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant Sulfite Oxidase With Bound Substrate, Sulfite, At The Active Site Length = 466

Iteration: 1
 Score =  204 bits (519), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 162/267 (60%), Gaps = 15/267 (5%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W GA+L DVL   G P        G  HV F  +D   +  G PY ASIP  +A +P
Sbjct: 211 TARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSP 264
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
            ADVLLAYEMNG  L RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK 
Sbjct: 265 AADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKG 324
Query: 153 FPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDI 212
           F P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+
Sbjct: 325 FSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDV 384
Query: 213 SVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAAN 270
           S+DGG+ W  A        P  A       WAW  +E+ + +   T  +IV KAVD++ N
Sbjct: 385 SLDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYN 437
Query: 271 VQPESVETIWNLRGVLNTSWHRVQVRV 297
           VQP+SV  IWNLRGVL+T+WHRV+V V
Sbjct: 438 VQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr 322 Phe Length = 466

Iteration: 1
 Score =  203 bits (517), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 175/311 (56%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q D+K F P V+WD +++++  
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDFKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVL 453
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464

>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 173/311 (55%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q D K F P V+WD +++++  
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNL GVL
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGVL 453
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464

>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 27/311 (8%)
Query: 1   MCHLYLNNPKEYINLLLFCA--VRTNLSFLY----------HFLSAVWSGAKLADVLELV 48
           +  L    PK  +   L CA   R+ +S +              +A W GA+L DVL   
Sbjct: 167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHA 226
Query: 49  GIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLN 108
           G P        G  HV F  +D   +  G PY ASIP  +A +P ADVLLAYEMNG  L 
Sbjct: 227 GFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVLLAYEMNGTELP 280
Query: 109 RDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRR 168
           RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q D K F P V+WD +++++  
Sbjct: 281 RDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAP 340
Query: 169 PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 228
            + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A     
Sbjct: 341 AIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD 400
Query: 229 TGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVL 286
              P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNL G+L
Sbjct: 401 KAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLMGML 453
Query: 287 NTSWHRVQVRV 297
           +T+WHRV+V V
Sbjct: 454 STAWHRVRVSV 464

>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of Assimilatory Nitrate Reductase From Pichia Angusta Length = 424

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +++W+G  L DV+                K   FV ++       G Y   I LS   +P
Sbjct: 105 TSLWTGCMLGDVIGKA----------RPSKRARFVWMEGADNPANGAYGTCIRLSWCMDP 154
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL  + +     + ++   D ++
Sbjct: 155 ERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRV 214
Query: 153 FPPSVN-----WDNINWKSRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGG 204
            P  V       D+  WK  R  + D  +Q +IC  E+  V+K    + +++G+  +GGG
Sbjct: 215 LPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGG 274
Query: 205 RGIERVDISVDGGKNWVEA------SRYQKT-------GIPYIADHMSSDKWA-WVFFEV 250
             I R+++S+D GK+W  A       RY++        G+  + D MS   W  W     
Sbjct: 275 VRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVP 334
Query: 251 IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 300
           + ++  S  I+ + +D    VQP ++   WN+  +LN  W+RV  +R G S
Sbjct: 335 LSELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 383

>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate Reducing Fragment Of Pichia Angusta Assimilatory Nitrate Reductase Length = 474

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +++W+G  L DV+                K   FV ++       G Y   I LS   +P
Sbjct: 155 TSLWTGCMLGDVIGKA----------RPSKRARFVWMEGADNPANGAYGTCIRLSWCMDP 204
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL  + +     + ++   D ++
Sbjct: 205 ERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRV 264
Query: 153 FPPSVN-----WDNINWKSRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGG 204
            P  V       D+  WK  R  + D  +Q +IC  E+  V+K    + +++G+  +GGG
Sbjct: 265 LPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGG 324
Query: 205 RGIERVDISVDGGKNWVEA------SRYQKT-------GIPYIADHMSSDKWA-WVFFEV 250
             I R+++S+D GK+W  A       RY++        G+  + D MS   W  W     
Sbjct: 325 VRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVP 384
Query: 251 IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 300
           + ++  S  I+ + +D    VQP ++   WN+  +LN  W+RV  +R G S
Sbjct: 385 LSELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 433

>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant Length = 373

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W G  L  VLE  G+       ++G K V F  +D         +  ++ +  AT+ 
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  V+LAY MNG  L   +GYPLR+VVPG  G   VK L+ I ++ +E  GF+M+  Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
            P +        K+     P+  F V+  I ++E+   +K G+  + G A   GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
           V +S D GK+W  A+     G           K+++  ++ ++ +     ++  +A +  
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
              QP  ++  WN  G +
Sbjct: 346 GETQP--MQATWNPAGYM 361

>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Length = 373

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W G  L  VLE  G+       ++G K V F  +D         +  ++ +  AT+ 
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  V+LAY MNG  L   +GYPLR+VVPG  G   VK L+ I ++ +E  GF+M+  Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
            P +        K+     P+  F V+  I ++E+   +K G+  + G A   GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
           V +S D GK+W  A+     G           K+++  ++ ++ +     ++  +A +  
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
              QP  ++  WN  G +
Sbjct: 346 GETQP--MQATWNPAGYM 361

>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant Length = 373

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W G  L  VLE  G+       ++G K V F  +D         +  ++ +  AT+ 
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  V+LAY MNG  L   +GYPLR+VVPG  G   VK L+ I ++ +E  GF+M+  Y++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
            P +        K+     P+  F V+  I ++E+   +K G+  + G A   GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
           V +S D GK+W  A+     G           K+++  ++ ++ +     ++  +A +  
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
              QP  ++  WN  G +
Sbjct: 346 GETQP--MQATWNPAGYM 361

>pdb|2C9X|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Y236f Mutant Length = 373

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 33  SAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNP 92
           +A W G  L  VLE  G+       ++G K V F  +D         +  ++ +  AT+ 
Sbjct: 128 NARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG 180
Query: 93  EADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM 152
           E  V+LAY MNG  L   +GYPLR+VVPG  G   VK L+ I ++ +E  GF+M+  +++
Sbjct: 181 E--VMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAFRI 238
Query: 153 FPPSVNWDNINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 209
            P +        K+     P+  F V+  I ++E+   +K G+  + G A   GG GI +
Sbjct: 239 -PDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQ 296
Query: 210 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTA 268
           V +S D GK+W  A+     G           K+++  ++ ++ +     ++  +A +  
Sbjct: 297 VSVSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNAR 345
Query: 269 ANVQPESVETIWNLRGVL 286
              QP  ++  WN  G +
Sbjct: 346 GETQP--MQATWNPAGYM 361

>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From Paracoccus Pantotrophus Length = 390

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 29/272 (10%)
Query: 6   LNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGK-HV 64
           L  P+        CA    + +    L        +   +E VG+P    +  +G K   
Sbjct: 107 LRFPRTTTTAFCECAANGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPEG 166
Query: 65  EFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIG 124
           +++  +     + G    S P+ +  +   DV+LA+  NGE L ++HGYP R+VVPG  G
Sbjct: 167 KWLYAEGADASSNG---RSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEG 220
Query: 125 ARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLED 184
              VKW+  + I  +  +       Y    P        W     +MD   + VI S   
Sbjct: 221 NMWVKWVRRLGIYDKAVESREETSKYTDLMPDGRARKWTW-----VMD--AKSVITSPSP 273
Query: 185 VNVMKPGKAK--VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 242
              ++ GK    +SG A SG GR I RVD+S+DGGKNW  A R     +P          
Sbjct: 274 QVPIRHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTA-RITGQALPK--------- 322
Query: 243 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQP 273
            A   F + ID   S  ++ ++AVD    VQP
Sbjct: 323 -ALTRFHLDIDWDGSEMLLQSRAVDETGYVQP 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	1e-121
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	1e-106
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	1e-104
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	3e-99
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	2e-90
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	8e-90
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	2e-74
1xdy_A	298	Bacterial sulfite oxidase; bioinformatics, sequenc	2e-16

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score =  352 bits (904), Expect = e-121
 Identities = 213/269 (79%), Positives = 241/269 (89%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           AVW GAKLADVLELVGIP LT+ T  G +HVEFVS+D+CKEENGGPYKASI LSQATNPE
Sbjct: 125 AVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYKASITLSQATNPE 184

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
           ADVLLAYEMNGE LNRDHG+PLRVVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKMF
Sbjct: 185 ADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMF 244

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 213
           PPSVNWDNINW SRRP MDFPVQ  ICS+EDV ++KPGK  + GYAVSGGGRGIERVDIS
Sbjct: 245 PPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDIS 304

Query: 214 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQP 273
           +DGGKNWVEASR Q+ G  YI++H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQP
Sbjct: 305 LDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQP 364

Query: 274 ESVETIWNLRGVLNTSWHRVQVRVGHSNM 302
           E+VE++WNLRGVLNTSWHRV +R+GHSN+
Sbjct: 365 ENVESVWNLRGVLNTSWHRVLLRLGHSNL 393

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score =  312 bits (801), Expect = e-106
 Identities = 121/266 (45%), Positives = 158/266 (59%), Gaps = 15/266 (5%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W GA+L DVL   G P        G  HV F  +D      G PY ASIP  +A +P 
Sbjct: 118 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDAD--PGGAPYGASIPYGRALSPA 171

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
           ADVLLAYEMNG  L RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F
Sbjct: 172 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGF 231

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 213
            P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+S
Sbjct: 232 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 291

Query: 214 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPH--STQIVAKAVDTAANV 271
           +DGG+ W  A        P          WAW  +E+ + +      +IV KAVD++ NV
Sbjct: 292 LDGGRTWKVARLMGDKAPP-------GRAWAWALWELTVPVEAGTELEIVCKAVDSSYNV 344

Query: 272 QPESVETIWNLRGVLNTSWHRVQVRV 297
           QP+SV  IWNLRGVL+T+WHRV+V V
Sbjct: 345 QPDSVAPIWNLRGVLSTAWHRVRVSV 370

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466

 Score =  312 bits (801), Expect = e-104
 Identities = 121/266 (45%), Positives = 158/266 (59%), Gaps = 15/266 (5%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W GA+L DVL   G P        G  HV F  +D      G PY ASIP  +A +P 
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDAD--PGGAPYGASIPYGRALSPA 265

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
           ADVLLAYEMNG  L RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGF 325

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 213
            P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385

Query: 214 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPH--STQIVAKAVDTAANV 271
           +DGG+ W  A        P          WAW  +E+ + +      +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPP-------GRAWAWALWELTVPVEAGTELEIVCKAVDSSYNV 438

Query: 272 QPESVETIWNLRGVLNTSWHRVQVRV 297
           QP+SV  IWNLRGVL+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLRGVLSTAWHRVRVSV 464

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* Length = 373

 Score =  295 bits (757), Expect = 3e-99
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 26/267 (9%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           A W G  L  VLE  G+       ++G K V F  +D         +  ++ +  AT+  
Sbjct: 129 ARWRGVPLKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDG- 180

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
            +V+LAY MNG  L   +GYPLR+VVPG  G   VK L+ I ++ +E  GF+M+  Y++ 
Sbjct: 181 -EVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRIP 239

Query: 154 PPSVNWDNINW--KSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVD 211
             +           +  P+  F V+  I ++E+   +K G+  + G A   GG GI +V 
Sbjct: 240 DNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVS 298

Query: 212 ISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST-QIVAKAVDTAAN 270
           +S D GK+W  A+     G           K+++  ++ ++ +      ++ +A +    
Sbjct: 299 VSADAGKSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGE 347

Query: 271 VQPESVETIWNLRGVLNTSWHRVQVRV 297
            QP   +  WN  G +       +V  
Sbjct: 348 TQPM--QATWNPAGYMRNVVEATRVIA 372

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta} Length = 424

 Score =  274 bits (703), Expect = 2e-90
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 34/287 (11%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           ++W+G  L DV+                + V     D       G Y   I LS   +PE
Sbjct: 106 SLWTGCMLGDVIGKARP-------SKRARFVWMEGADN---PANGAYGTCIRLSWCMDPE 155

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
             +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL  + +     + ++   D ++ 
Sbjct: 156 RCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVL 215

Query: 154 PPSVNWDNIN------WKSRRPLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGR 205
           P  V  +            R  + D  +Q +IC  E+  V+K    + +++G+  +GGG 
Sbjct: 216 PTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGV 275

Query: 206 GIERVDISVDGGKNWVEAS-----------RYQKTGIPYIADHMSSDKWAWVFFEVIIDI 254
            I R+++S+D GK+W  A             Y +     +          W F+++ + +
Sbjct: 276 RIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPL 335

Query: 255 PH---STQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG 298
                S  I+ + +D    VQP ++   WN+  +LN  W+RV +   
Sbjct: 336 SELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIRE 380

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Length = 474

 Score =  274 bits (702), Expect = 8e-90
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 34/287 (11%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
           ++W+G  L DV+                + V     D       G Y   I LS   +PE
Sbjct: 156 SLWTGCMLGDVIGKARP-------SKRARFVWMEGADN---PANGAYGTCIRLSWCMDPE 205

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
             +++AY+ NGE L+ DHG PLRVV+PGVIG RSVKWL  + +     + ++   D ++ 
Sbjct: 206 RCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVL 265

Query: 154 PPSVNWDNIN------WKSRRPLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGR 205
           P  V  +            R  + D  +Q +IC  E+  V+K    + +++G+  +GGG 
Sbjct: 266 PTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGV 325

Query: 206 GIERVDISVDGGKNWVEAS-----------RYQKTGIPYIADHMSSDKWAWVFFEVIIDI 254
            I R+++S+D GK+W  A             Y +     +          W F+++ + +
Sbjct: 326 RIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPL 385

Query: 255 PH---STQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG 298
                S  I+ + +D    VQP ++   WN+  +LN  W+RV +   
Sbjct: 386 SELARSKDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIRE 430

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Length = 390

 Score =  232 bits (593), Expect = 2e-74
 Identities = 72/266 (27%), Positives = 107/266 (40%), Gaps = 40/266 (15%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 93
             + G  L+ +L   G+       +  GK +     D            S P+ +  +  
Sbjct: 146 MEYVGVPLSVLLAEAGV-------KPEGKWLYAEGAD------ASSNGRSFPMEKVMD-- 190

Query: 94  ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 153
            DV+LA+  NGE L ++HGYP R+VVPG  G   VKW+  + I  +  +       Y   
Sbjct: 191 -DVMLAFFANGEALRKEHGYPARLVVPGWEGNMWVKWVRRLGIYDKAVESREETSKYTDL 249

Query: 154 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAK--VSGYAVSGGGRGIERVD 211
            P        W           + VI S      ++ GK    +SG A SG GR I RVD
Sbjct: 250 MPDGRARKWTW-------VMDAKSVITSPSPQVPIRHGKGPLVISGLAWSGNGR-ITRVD 301

Query: 212 ISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPH-STQIVAKAVDTAAN 270
           +S+DGGKNW  A    +               A   F + ID       + ++AVD    
Sbjct: 302 VSLDGGKNWTTARITGQAL-----------PKALTRFHLDIDWDGSEMLLQSRAVDETGY 350

Query: 271 VQPESVETIWNLRGVLNTSWHRVQVR 296
           VQP   + +  +RG  N  +H   ++
Sbjct: 351 VQPT-KDALRAIRG-RNNVYHNNGIQ 374

>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis, electron transfer, oxidoreductase, molybdoenzymes, molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP: d.176.1.1 PDB: 1xdq_A* Length = 298

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 36  WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENG-----------GPYKASI 84
           W G  L  +L L           S  K+V F +I   ++  G            PY   +
Sbjct: 112 WIGFPLHKLLALAEP-------TSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGL 164

Query: 85  PLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGF 144
            L +A +P    L+   + G+ L   +G P+R++VP   G + +K + +I +  E     
Sbjct: 165 RLDEAMHP--LTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTT 222

Query: 145 FMQKDYKM--FPPSVN 158
           +         F  +VN
Sbjct: 223 WNLAAPDEYGFYANVN 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	100.0
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	100.0
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	100.0
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	100.0
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	100.0
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	100.0
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	100.0
1xdy_A	298	Bacterial sulfite oxidase; bioinformatics, sequenc	100.0
3pe9_A	98	Fibronectin(III)-like module; CBHA, beta-sandwich,	99.24
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	98.19
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	97.68

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*

Probab=100.00  E-value=7.3e-83  Score=614.28  Aligned_cols=286  Identities=44%  Similarity=0.803  Sum_probs=253.8

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcCc---c-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLSF---L-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~~---~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+++||+++++++|+|+|+  .+|..   +       .+|++++|+||+|+|||++||++.+    ..++++|.|+|
T Consensus        73 l~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~w~~gav~~~~W~GV~L~dlL~~ag~~~~----~~~a~~V~~~~  148 (372)
T 2a9d_A           73 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEE----LQGEWHVCFEG  148 (372)
T ss_dssp             HHHHHHHSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSC----CSSCCEEEEEE
T ss_pred             HHHHHhhCCCeEEEEEEEecCCchhhccccccccccccccCceecceEEeEEHHHHHHhcCCCcC----CCCcEEEEEEe
Confidence            5789658999999999999992  22211   1       1788999999999999999999732    12689999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|..+  ++.+|.++|||++||++++++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||++
T Consensus       149 ~D~~~--~~~~Y~~sipl~~a~dp~~d~lLA~~mNGepL~~~hG~PlRlVvPg~~G~ksvKwl~~I~v~~~~~~~~w~~~  226 (372)
T 2a9d_A          149 LDADP--GGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQN  226 (372)
T ss_dssp             EEECT--TCCEEEEEEEHHHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHS
T ss_pred             cCCCC--CCCCeEEEeEHHHHhCCCCCEEEEECCCCeECCcccCceEEEEecchhheeecceeeEEEEeccCCCCcceec
Confidence            98422  2337999999999998645899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      +|+.++|..++++.+|...++|++|++||+|+.|.++++|+.|.++|+||||||||++|+|||||+|||+||++|+|..+
T Consensus       227 ~Y~~~~p~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~  306 (372)
T 2a9d_A          227 DYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD  306 (372)
T ss_dssp             SSCCCCTTCCTTTCCGGGSCCCCBCCCEEEEEESCTTCEECSEEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEECSC
T ss_pred             ceeEcCCCCCccccccccCcccccccccEEEecCCCCCEeccceEEEEEEEEcCCCCCEEEEEEEcCCCCcceEeEcCCc
Confidence            99999998877777787888999999999999999999999999999999999888999999999999999999999866


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEEC-CC-ccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEee
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDI-PH-STQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH  299 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~-~g-~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~  299 (302)
                      +.       ...++|||++|+++|++ +| .++|+|||||++||+||+....+||++||+||+||+|+|+|.+
T Consensus       307 ~~-------~~~~~~~W~~W~~~~~~~~g~~~~i~~RA~D~~g~~QP~~~~~~wn~~G~~~n~~~~v~v~v~~  372 (372)
T 2a9d_A          307 KA-------PPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQD  372 (372)
T ss_dssp             CC-------CTTCCCSCEEEEEEEEECTTCEEEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEECC
T ss_pred             cc-------ccCCccEEEEEEEeEEcCCCCEEEEEEEEEcCCCCcCCCCccCCcCCCCcccceEEEEEEEEeC
Confidence            42       12358999999999988 55 7999999999999999998767899999999999999999974

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1

Probab=100.00  E-value=7.6e-82  Score=611.02  Aligned_cols=300  Identities=73%  Similarity=1.216  Sum_probs=253.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcC---cc-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLS---FL-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~---~~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+|| ++||+++++++|+|+|+  ..|+   ++       .+|++++|+||+|+|||++||++.++.....+.++|.|+|
T Consensus        81 l~dL-~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aG~~~~a~~~~~~~~~V~f~g  159 (393)
T 1ogp_A           81 IKDI-RSLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVS  159 (393)
T ss_dssp             HHHH-HTSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEEE
T ss_pred             HHHH-hcCCCEEEEEEEEecCCccccccccccccCccccccceecceEEeeEHHHHHHhcCCCcccccccCcceEEEEEE
Confidence            5789 68999999999999982  2221   11       1789999999999999999999864211112337999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|.....++.+|.++|||++||++++++||||+|||||||++|||||||||||+||++|||||++|+|+++++++|||++
T Consensus       160 ~D~~~~~~~~~Y~~sipl~~al~~~~~vlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwL~~I~v~~~~~~~~w~~~  239 (393)
T 1ogp_A          160 VDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQK  239 (393)
T ss_dssp             SCCCGGGTTCCCEEEEEHHHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHHHS
T ss_pred             cCcccccCCCCeEEEeEHHHHhCCCCCEEEEeCcCCeECCcccCceEEEEeCccccceeeeeccEEEEEecCCCCcceec
Confidence            99544444458999999999998644799999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      +|+++|+.++++...+....+|++|++||+|+.|.++++|+.|.++|+||||||||++|+|||||+|||+||++|+|..+
T Consensus       240 ~Y~~~p~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~  319 (393)
T 1ogp_A          240 DYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQE  319 (393)
T ss_dssp             SSCCCCTTCCTTTCCGGGSCCCCSCCCEEEECSSCSEEEECSEEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEESS
T ss_pred             cccccCCCCCcccccCCCCceeeeecccEEEeCCCCCCEecCCcEEEEEEEEcCCCCCEEEEEEEcCCCCCceEeeccCc
Confidence            99999888877766666677899999999999999999999999999999999988999999999999999999999874


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEECCCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEeecC
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSN  301 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~~~  301 (302)
                      +..++........+|||++|+++|++.++++|+|||+|++||+||+....+||++||+||+||+|+|+|.+|+
T Consensus       320 ~~~~~~~~~~~~~~~aW~~W~~~~~~~~~~~i~vRA~D~~gn~QP~~~~~~wN~~G~~~N~~~~v~v~~~~~~  392 (393)
T 1ogp_A          320 PGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSN  392 (393)
T ss_dssp             SSSCCCSSSTTSCTTSCEEEEEEEEESSCEEEEEEEEETTCCBCCSCHHHHCCTTCCCCCCCEEEEEEEC---
T ss_pred             CccccccccccCCCCEEEEEEEEEecCCCeEEEEEEEcCCCCcCCCCccCcccCCCcccCCEEEEEEECCCCC
Confidence            3111111122235899999999999844899999999999999999855569999999999999999988775

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*

Probab=100.00  E-value=2.5e-80  Score=612.02  Aligned_cols=286  Identities=44%  Similarity=0.803  Sum_probs=254.1

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcCc---c-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLSF---L-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~~---~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+++||+++++++|+|+|+  .+|..   +       .+|++++|+||+|+|||++||++.+    .+++++|.|+|
T Consensus       167 l~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~W~~gai~~~~W~Gv~L~dlL~~ag~~~~----~~~a~~V~~~~  242 (466)
T 1sox_A          167 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEE----LQGEWHVCFEG  242 (466)
T ss_dssp             HHHHHHHSCEEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSC----CSSCCEEEEEE
T ss_pred             HHHHHhhCCCeEEEEEEEecCCCcccccccccccccccccCceecceEEEEEHHHHHHHcCCCCC----CCCcEEEEEEe
Confidence            5789658999999999999982  22211   1       1688999999999999999999732    12689999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|..+  ++.+|.++|||++||++++++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||++
T Consensus       243 ~D~~~--~~~~Y~~sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRlvvPg~~G~~svKwl~~I~v~~~~~~~~w~~~  320 (466)
T 1sox_A          243 LDADP--GGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQN  320 (466)
T ss_dssp             EEECT--TCCEEEEEEEHHHHHCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCSHHHHS
T ss_pred             cCCCC--CCCCEEEEeEHHHHhCCCCCEEEEECcCCeECChhcCceEEEEecchhheeeeeeccEEEEEeCCCCCcceec
Confidence            98432  2347999999999998756899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      +|+.++|..++++.+|...++|++|++||+|+.|.++++|+.|.++|+||||||||++|+|||||+|||+||++|+|..+
T Consensus       321 ~Y~~~~p~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~g~~~v~G~A~sggg~~I~rVEVS~DgG~tW~~A~l~~~  400 (466)
T 1sox_A          321 DYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD  400 (466)
T ss_dssp             SSCCCCTTCCTTTCCGGGSCCCCBCCCEEEEEESCTTCEECSEEEEEEEEEECSTTCCEEEEEEESBTTSSCEECEECSC
T ss_pred             CceecCCCCCccccccccccccccccccEEEecCCCCCEeccceEEEEEEEEcCCCCCEEEEEEEcCCCCcceEeecCCc
Confidence            99999998877777787888999999999999999999999999999999999888999999999999999999999866


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEEC-CC-ccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEee
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDI-PH-STQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH  299 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~-~g-~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~~  299 (302)
                      +.       ...++|||++|+++|++ +| .++|+|||||++||+||+....+||++||+||+||+|+|+|.+
T Consensus       401 ~~-------~~~~~~~W~~W~~~~~~~~g~~~~i~~RA~D~~g~~QP~~~~~~wn~~G~~~n~~~~v~v~v~~  466 (466)
T 1sox_A          401 KA-------PPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQD  466 (466)
T ss_dssp             CC-------CTTCCCSCEEEEEEEEECTTCEEEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEECC
T ss_pred             cc-------ccCCccEEEEEEEeEEcCCCCEEEEEEEEEcCCCCcCCCCccCCcCCCCcccceEEEEEEEEeC
Confidence            42       12358999999999987 55 7999999999999999998767899999999999999999974

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*

Probab=100.00  E-value=1e-78  Score=585.67  Aligned_cols=275  Identities=27%  Similarity=0.478  Sum_probs=239.2

Q ss_pred             ChhhhhhCCCeEEEEEEEecC--CCCcC-cc-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEec
Q 022157            1 MCHLYLNNPKEYINLLLFCAV--RTNLS-FL-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID   70 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~g--r~~~~-~~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D   70 (302)
                      |+||+++||+++++++|+|++  |.+|. ++       .+|++++|+||+|+|||++||+++       ++++|.|+|+|
T Consensus        86 l~dL~~~lp~~~~~~~l~C~~N~R~~~~~~~~G~~W~~gai~~~~W~GV~L~dlL~~ag~~~-------~a~~V~~~~~D  158 (373)
T 2blf_A           86 LQDLKNDFPASEVVAVNQCSGNSRGFVEPRVGGGQLANGAMGNARWRGVPLKAVLEKAGVQA-------GAKQVTFGGLD  158 (373)
T ss_dssp             HHHHHHHSCCEEEEEEEECTTTTGGGCSSCCSSCCCCSCSEEEEEEEEEEHHHHHHHHCBCT-------TCCEEEEEESC
T ss_pred             HHHHhccCCCeEEEEEEEeccCccccccccccCCCccccceeeeEEEEEEHHHHHHhcCCCC-------CCcEEEEEecC
Confidence            578965599999999999999  33432 11       168999999999999999999986       69999999999


Q ss_pred             cccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeecC
Q 022157           71 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY  150 (302)
Q Consensus        71 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~Y  150 (302)
                      .....+...|.++|||++||++  ++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||+++|
T Consensus       159 ~~~~~~~~~Y~~sipl~~a~~~--~~lLA~~mNGepL~~~hG~PlRlVvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y  236 (373)
T 2blf_A          159 GPVIPETPDFVKALSIDHATDG--EVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAY  236 (373)
T ss_dssp             BCSSTTSCCCEEEEEHHHHTSS--CSEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCHHHHTSS
T ss_pred             CCCCCCCCCEEEEEEHHHhcCC--CEEEEEeeCCeECCcccCCceEEEecCccccccceeccEEEEEecCCCCcceeccc
Confidence            4222222239999999999986  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcC--CCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCc
Q 022157          151 KMFPPSVNWDNINWK--SRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK  228 (302)
Q Consensus       151 ~~~~~~~~~~~~~~~--~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~  228 (302)
                      +++.........+|.  +..+|++|++||+|+.|.++++|+.|.++|+||||+ |+++|+|||||+|||+||++|+|..+
T Consensus       237 ~~p~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~g~~~v~G~A~~-Gg~~I~rVEVS~DgG~tW~~A~l~~~  315 (373)
T 2blf_A          237 RIPDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAGKSWTNATLDPG  315 (373)
T ss_dssp             EEESSTTCCCSTTCCCSSEEECCBCCCEEEECSCCTTEEECSEEEEEEEEEEC-SSSCEEEEEEESSTTSSCEECEECCC
T ss_pred             ccCCccccccCCCCcccccccceecccCEEEEecCCCCEeccceEEEEEEEEc-CCCCEEEEEEEeCCCCCceEeEeCCC
Confidence            983221111122333  456799999999999999999999999999999996 57899999999999999999999866


Q ss_pred             CCCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 022157          229 TGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG  298 (302)
Q Consensus       229 ~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~  298 (302)
                      ..           +|||++|+++|+. +|+++|+|||+|++||+||+...  ||++||+||+||+|+|+|.
T Consensus       316 ~~-----------~~~W~~W~~~~~~~~g~~~i~~RA~D~~g~~QP~~~~--wn~~G~~~N~~~~v~v~v~  373 (373)
T 2blf_A          316 LG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGETQPMQAT--WNPAGYMRNVVEATRVIAA  373 (373)
T ss_dssp             SC-----------TTSCEEEEEEEEECSEEEEEEEEEEETTSCCCCSSCC--CCTTCCCCCCCEEEEEEEC
T ss_pred             CC-----------CCeEEEEEEEEEcCCCcEEEEEEEEcCCCCcCCCccc--ccccccccCcEEEEEEEEC
Confidence            54           8999999999987 68899999999999999998776  9999999999999999984

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta}

Probab=100.00  E-value=6.1e-78  Score=587.40  Aligned_cols=285  Identities=28%  Similarity=0.526  Sum_probs=243.0

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcC---c-------cceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLS---F-------LYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~---~-------~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+++||+++++++|+|+++  .+|+   +       ..+|++++|+||+|+|||++||+++       ++++|.|+|
T Consensus        61 l~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~~ai~~a~WtGV~L~dlL~~ag~~~-------~a~~V~f~~  133 (424)
T 2bii_A           61 LSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSK-------RARFVWMEG  133 (424)
T ss_dssp             HHHHHHHSCCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHHCBCT-------TCCEEEEEE
T ss_pred             HHHHhccCCCeEEEEEEEecCCccccccccccccccccccCceEeeEEEeeEHHHHHHhcCCCC-------CceEEEEEe
Confidence            5789656999999999999993  2221   0       0168899999999999999999986       699999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|..+   .++|.++|||++||++++++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||.+
T Consensus       134 ~D~~~---~g~Y~~sipl~~a~d~~~dvlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwl~~I~v~~~~~~g~~~~~  210 (424)
T 2bii_A          134 ADNPA---NGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYF  210 (424)
T ss_dssp             SCCCT---TSSCEEEEEHHHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHS
T ss_pred             cCCCC---CCCEEEEEEHHHHhCCCCCEEEEEeeCCcCCCcccCCceEEEecccccCCccccCcEEEEEeccCCCceeee
Confidence            98432   237999999999999755799999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCC----CC-cCC-CCCccceeceEEEEeecCCCeec--CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCc
Q 022157          149 DYKMFPPSVNWDN----IN-WKS-RRPLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNW  220 (302)
Q Consensus       149 ~Y~~~~~~~~~~~----~~-~~~-~~~i~~~~v~S~I~~P~~~~~v~--~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW  220 (302)
                      +|+++|+..+++.    .+ |.+ ..+|++|+|||+|+.|.++++|+  .|.|+|+||||||||++|+|||||+|||+||
T Consensus       211 ~yrv~p~~~~~~~~~~~~~~w~~~~~~i~~l~v~S~I~~P~~~~~v~~~~g~~~v~GyA~sGGGr~I~rVEVS~DgG~tW  290 (424)
T 2bii_A          211 DNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSW  290 (424)
T ss_dssp             SSBCCCTTCCHHHHHHCGGGGSCGGGBCCBCCCEEEEEESCTTCEEECCSCEEEEEEEEECSTTCCEEEEEEESSTTSSC
T ss_pred             cccccCCCCCccccccccCccccCcceecccccceEEecCCCCCEeecCCCeEEEEEEEEcCCCCCEEEEEEEcCCCCCc
Confidence            9999987765432    12 333 35799999999999999999996  4589999999999889999999999999999


Q ss_pred             EEeEccCcCCCc--------ccc--cC-CCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCC
Q 022157          221 VEASRYQKTGIP--------YIA--DH-MSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVL  286 (302)
Q Consensus       221 ~~A~L~~~~~~~--------~~~--~~-~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~  286 (302)
                      +.|+|..++...        +.+  +. -.+++|||++|+++|++   +|+++|+|||+|++||+||+..  +||++||+
T Consensus       291 ~~A~L~~pe~~~~~~~~~~~~g~~~~~~~~~~~~~W~~W~~~~~~~~~~g~~~I~vRA~D~~gn~QP~~~--~WN~~G~~  368 (424)
T 2bii_A          291 KLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTM--YWNVTSML  368 (424)
T ss_dssp             EECEEECTHHHHHHTCSEEETTEEECGGGCCCCCSCEEEEEEEEHHHHHTCSEEEEEEEETTCCBCCSSC--CCCTTCCS
T ss_pred             eEeEccCcCCcccccccccccccccccccccccceeeeeEEEEecccCCCceEEEEEEEcCCCCcCCCCc--cccccccc
Confidence            999998654200        000  00 01247999999999986   5889999999999999999864  59999999


Q ss_pred             CCceEEEEEEE
Q 022157          287 NTSWHRVQVRV  297 (302)
Q Consensus       287 ~n~~h~v~v~v  297 (302)
                      ||+||+|+|++
T Consensus       369 nN~~~rv~v~~  379 (424)
T 2bii_A          369 NNWWYRVAIIR  379 (424)
T ss_dssp             CCSCEEEEEEE
T ss_pred             cCcEEEEEEEe
Confidence            99999999997

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}

Probab=100.00  E-value=5.3e-77  Score=586.42  Aligned_cols=285  Identities=28%  Similarity=0.526  Sum_probs=243.2

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcC---c-------cceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLS---F-------LYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~---~-------~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+++||+++++++|+|+++  .+|+   +       ..+|++++|+||+|+|||++||+++       ++++|.|+|
T Consensus       111 l~dL~~~lp~~~~~~~l~CvgN~r~e~~~v~~~~G~~W~~~avs~a~WtGV~L~dlL~~aG~~~-------~A~~V~f~g  183 (474)
T 2bih_A          111 LSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSK-------RARFVWMEG  183 (474)
T ss_dssp             HHHHHHHSCCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHTCBCT-------TCCEEEEEE
T ss_pred             HHHHhhcCCCeEEEEEEEccCCccccccccccccccccccCceeeeEEEeEEHHHHHHhcCCCC-------CceEEEEEe
Confidence            5789656999999999999993  1211   0       1168899999999999999999986       699999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|..+   .++|.++|||++||++++++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||.+
T Consensus       184 ~D~~~---~g~Y~~sipl~~ald~~~dvlLA~~mNGepLp~~hG~PlRLVvPg~~G~rsvKWL~~Iev~~~~~~g~~~~~  260 (474)
T 2bih_A          184 ADNPA---NGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYF  260 (474)
T ss_dssp             SCCCT---TSSCEEEEEHHHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBBGGGSCSSEEEEEEESSCCCCHHHHH
T ss_pred             cCCCC---CCCeEEEEEHHHHhCcCCCEEEEEeeCCeECCccCCCeeEEEecccccCCccccCCEEEEEeccCCCceeee
Confidence            98432   237999999999999755799999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCC----CC-cCC-CCCccceeceEEEEeecCCCeec--CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCc
Q 022157          149 DYKMFPPSVNWDN----IN-WKS-RRPLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNW  220 (302)
Q Consensus       149 ~Y~~~~~~~~~~~----~~-~~~-~~~i~~~~v~S~I~~P~~~~~v~--~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW  220 (302)
                      +|+++|+..+++.    .+ |.+ ..+|++|+|||+|+.|.++++|+  .|.|+|+||||||||++|+|||||+|||+||
T Consensus       261 ~yrv~p~~~~~~~~~~~~~~W~~~~~~i~~~~vnS~I~~P~~~e~v~~~~g~~~v~GyA~sGGGr~I~RVEVS~DgG~TW  340 (474)
T 2bih_A          261 DNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSW  340 (474)
T ss_dssp             SSBCCCTTCCHHHHHTCGGGGSCGGGBCCBCCCEEEEEESCTTCEEECCSCEEEEEEEEECSTTCCEEEEEEESSSSSSC
T ss_pred             cccccCCCCCccccccccCccccCcceeeccccceEEecCCCCCEeecCCCeEEEEEEEEcCCCCCEEEEEEEcCCCCCc
Confidence            9999987765432    12 443 45799999999999999999996  4589999999999889999999999999999


Q ss_pred             EEeEccCcCCCc--------ccc--cC-CCCCceeeEEeEEEEEC---CCccEEEEEEEeCCCCCCCCCcccccccccCC
Q 022157          221 VEASRYQKTGIP--------YIA--DH-MSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVL  286 (302)
Q Consensus       221 ~~A~L~~~~~~~--------~~~--~~-~~~~~~~W~~W~~~~~~---~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~  286 (302)
                      +.|+|..++...        +.+  +. -.+++|||++|+++|++   +|+++|+|||+|++||+||+..  +||++||+
T Consensus       341 ~~A~L~~pe~~~r~~~~~~~~g~~~~~~~~~~~~~W~~W~~~~~~~~~~g~~~I~vRA~D~sgn~QP~~~--~WN~~G~~  418 (474)
T 2bih_A          341 KLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTM--YWNVTSML  418 (474)
T ss_dssp             EECEEECTHHHHHHTCCEEETTEEECGGGCCCCCSCEEEEEEEEHHHHHTCSEEEEEEEETTCCBCCSSC--CCCTTCCS
T ss_pred             eECcccCccccccccccccccccccccccccccceeeeeEEEEecccCCCceEEEEEEEcCCCCcCCCCc--cccccccc
Confidence            999998654100        000  00 01247999999999996   5889999999999999999864  59999999


Q ss_pred             CCceEEEEEEE
Q 022157          287 NTSWHRVQVRV  297 (302)
Q Consensus       287 ~n~~h~v~v~v  297 (302)
                      ||+||+|+|++
T Consensus       419 nN~~~rV~v~~  429 (474)
T 2bih_A          419 NNWWYRVAIIR  429 (474)
T ss_dssp             CCSCEEEEEEE
T ss_pred             cCcEEEEEEEe
Confidence            99999999997

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=100.00  E-value=1.7e-70  Score=530.30  Aligned_cols=260  Identities=28%  Similarity=0.388  Sum_probs=229.5

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCC--cC--cc-------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEe
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTN--LS--FL-------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSI   69 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~--~~--~~-------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~   69 (302)
                      |+||+ +||+++++++|+|++++.  ++  ++       .+|++++|+||+|+|||++||+++       ++++|.|+|+
T Consensus       103 l~dL~-~lp~~~~~~~l~C~gn~r~~w~~~~~~g~~w~~g~i~~~~W~GV~L~dlL~~ag~~~-------~a~~V~~~~~  174 (390)
T 2xts_A          103 FEDLL-RFPRTTTTAFCECAANGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKP-------EGKWLYAEGA  174 (390)
T ss_dssp             HHHHT-TSCCEEEEEEEECTTTTGGGTTSCCCSSHHHHHCSEEEEEEEEEEHHHHHHHHCBCT-------TCCEEEEEES
T ss_pred             HHHHh-cCCCEEEEEEEEecCCcccccccccccccccccCceeeeEEEEEEHHHHHHhcCCCC-------CceEEEEEec
Confidence            57895 899999999999999422  11  11       178999999999999999999986       5899999999


Q ss_pred             ccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec
Q 022157           70 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD  149 (302)
Q Consensus        70 D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~  149 (302)
                      |      +..|.++|||+++|+   ++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||+.+
T Consensus       175 D------g~~y~~sipl~~a~~---~~lLA~~mNGepL~~~hG~PlRLVvPg~~G~~svKwl~~I~v~~~~~~~~~~~~~  245 (390)
T 2xts_A          175 D------ASSNGRSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEGNMWVKWVRRLGIYDKAVESREETSK  245 (390)
T ss_dssp             S------TTCCCEEEEHHHHHH---HCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCGGGTTS
T ss_pred             C------CCeEEEEEEHHHHhc---CcEEEEeECCeECCccCCCceEEEecCccCcccceeccEEEEEecCCCCchhhcc
Confidence            8      123999999999996   7999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeec--CCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccC
Q 022157          150 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ  227 (302)
Q Consensus       150 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~--~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~  227 (302)
                      |+.+.|+...       ..++..|+|||+|+.|.+++.|+  +|.++|+||||+|++ +|+|||||+|+|+||++|+|..
T Consensus       246 y~~~~~~~~~-------~~~~~~~~vnS~I~~P~~~~~i~~~~g~~~v~G~A~~G~g-~I~rVevS~DgG~tW~~A~L~~  317 (390)
T 2xts_A          246 YTDLMPDGRA-------RKWTWVMDAKSVITSPSPQVPIRHGKGPLVISGLAWSGNG-RITRVDVSLDGGKNWTTARITG  317 (390)
T ss_dssp             SCEECTTSCE-------EECCCBCCCEEEEEESBTTBCCCSCSEEEEEEEEEECTTS-CEEEEEEESBTTSSCEECEEES
T ss_pred             ccccCCCCCc-------cccceeecCceeeecCCCCCEeecCCCcEEEEEEEEcCCC-cEEEEEEecCCCCcEEEeeccC
Confidence            9987654221       13478999999999999999985  468999999999876 7999999999999999999998


Q ss_pred             cCCCcccccCCCCCceeeEEeEEEEEC-CCccEEEEEEEeCCCCCCCCCccccccc----ccCCCCceEEEEEEE
Q 022157          228 KTGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQPESVETIWNL----RGVLNTSWHRVQVRV  297 (302)
Q Consensus       228 ~~~~~~~~~~~~~~~~~W~~W~~~~~~-~g~~~i~~RA~D~~Gn~QP~~~~~~wN~----~G~~~n~~h~v~v~v  297 (302)
                      +..           +++|++|++.|.+ .+.++|+|||+|++||+||+.. .+||+    .||++|++|+++|..
T Consensus       318 ~~~-----------~~aw~~w~~~~~~~~g~~~i~vRA~D~~gn~QP~~~-~~~~~~g~~~gy~~n~i~~~~v~~  380 (390)
T 2xts_A          318 QAL-----------PKALTRFHLDIDWDGSEMLLQSRAVDETGYVQPTKD-ALRAIRGRNNVYHNNGIQTWWVKA  380 (390)
T ss_dssp             CCC-----------TTSCEEEEEEEEECSCCEEEEEEEEETTCCBCCCHH-HHHHHHCSCCCSCCCCCCEEEECT
T ss_pred             CCC-----------CCceEEEEEEEEcCCCccEEEEEEEcCCCCcCCCcc-cccccCccccceeeeeEEEEEEcc
Confidence            765           7899999999987 6788999999999999999864 36777    579999999999864

>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis, electron transfer, oxidoreductase, molybdoenzymes, molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP: d.176.1.1 PDB: 1xdq_A*

Probab=100.00  E-value=4.5e-43  Score=327.49  Aligned_cols=198  Identities=19%  Similarity=0.225  Sum_probs=153.9

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEecccc---ccC-
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EEN-   76 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~---~~~-   76 (302)
                      |+||+++||+++++++|+|+++|++       ++.|+||+|+|||++||+++       ++++|.|+|+|...   ++. 
T Consensus        84 l~dL~~~lP~~e~~~~l~Cv~~Ws~-------~~~W~GV~L~dLL~~aG~~~-------~A~~V~f~~~dd~~~~~G~~~  149 (298)
T 1xdy_A           84 HDDLTRRFPLEERIYRMRCVEAWSM-------VVPWIGFPLHKLLALAEPTS-------NAKYVAFETIYAPEQMPGQQD  149 (298)
T ss_dssp             HHHHHHTSCCEEEEEEEEETTTEEE-------EEEEEEEEHHHHHHHHCBCT-------TCCEEEEEECCCTTTCGGGTC
T ss_pred             HHHHhccCCCeEEEEEEEecCCCcc-------eeEEEeEEHHHHHHHcCCCC-------CCeEEEEEeCCChhcccCccc
Confidence            5789756999999999999998763       79999999999999999986       69999999996311   111 


Q ss_pred             -------CCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec
Q 022157           77 -------GGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD  149 (302)
Q Consensus        77 -------~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~  149 (302)
                             ..+|.++|||++||++  ++||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||+.+
T Consensus       150 ~~~~~~~~~~Y~~slpl~~a~~~--~~lLA~~mNGepLp~~hG~PlRLVVPg~yG~ksvKwl~~Iev~~~~~~g~We~~~  227 (298)
T 1xdy_A          150 RFIGGGLKYPYVEGLRLDEAMHP--LTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAA  227 (298)
T ss_dssp             TTTTTTCCSSCEEEEEHHHHHST--TCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCCHHHHHC
T ss_pred             cccccccCCCeEEEEEHHHhcCC--CEEEEEeeCCeECCcccCCceEEEeCCccccCcceeccEEEEEeCCCCCchhhcC
Confidence                   2369999999999996  7999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCcCCCCCccceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEE
Q 022157          150 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVE  222 (302)
Q Consensus       150 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~  222 (302)
                      |+.+....+   .+..-..|.++|..+++|. + .+. +.  .-++..++|.|.+..|++++.++|.++..-+
T Consensus       228 y~~yg~~~n---~n~~v~~P~w~q~~er~i~-~-g~~-~~--~~r~~t~~fnGy~~~va~ly~~md~~~~~~~  292 (298)
T 1xdy_A          228 PDEYGFYAN---VNPYVDHPRWSQATERFIG-S-GGI-LD--VQRQPTLLFNGYADQVASLYRGLDLRENFLE  292 (298)
T ss_dssp             TTTCCSSCB---CCTTSCBTTBCCSEEEECC-C-C---------CEECCGGGGTHHHHHHHHTTCCC------
T ss_pred             ccccCcccC---CCCCCCCCcccccceeEEc-C-CCc-ee--ecccCceeecccHHHhhhhhhCcccchhhhh
Confidence            887632111   1111123455666666664 1 100 00  1356888999988899999999999876543

>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}

Probab=99.24  E-value=2.2e-11  Score=96.11  Aligned_cols=76  Identities=20%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             EEEeecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC-C
Q 022157          178 VICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-P  255 (302)
Q Consensus       178 ~I~~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~-~  255 (302)
                      .|+.|.+|+.+..| .++|.+-|++..| .|.||||++||+.      +.               .-+|..|+|.|+. +
T Consensus         3 sItsP~~ga~v~~g~~v~i~a~A~D~dg-~V~kVef~vdg~~------vg---------------~dt~apy~~~w~~~~   60 (98)
T 3pe9_A            3 KLTAPKSNVVAYGNEFLKITATASDSDG-KISRVDFLVDGEV------IG---------------SDREAPYEYEWKAVE   60 (98)
T ss_dssp             EEEECCTTCCEETTSEEEEEEEECCSSS-CEEEEEEEETTEE------EE---------------EECSSSEEEEEECCS
T ss_pred             EEeeCCCcCEEcCCCEEEEEEEEEeCCC-CEEEEEEEECCEE------ec---------------ccccCCEEEEEEcCC
Confidence            58999999999987 5999999998644 7999999999952      21               2367899999997 7


Q ss_pred             CccEEEEEEEeCCCCCCCCC
Q 022157          256 HSTQIVAKAVDTAANVQPES  275 (302)
Q Consensus       256 g~~~i~~RA~D~~Gn~QP~~  275 (302)
                      |.|+|.+||+|.+|++|...
T Consensus        61 G~htl~a~AtD~~G~~~tS~   80 (98)
T 3pe9_A           61 GNHEISVIAYDDDDAASTPD   80 (98)
T ss_dssp             EEEEEEEEEEETTCCBCCCE
T ss_pred             ccEEEEEEEEECCCCEEeee
Confidence            99999999999999999753

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=98.19  E-value=2.6e-06  Score=74.22  Aligned_cols=74  Identities=14%  Similarity=-0.017  Sum_probs=60.0

Q ss_pred             EEEeecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEEEC--
Q 022157          178 VICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI--  254 (302)
Q Consensus       178 ~I~~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~~~--  254 (302)
                      .|+.|.+|+.+..| .++|.+-|+. .+ +|.+|||.+||.      .+..               -.|..|++.|..  
T Consensus         3 ~ItsP~~g~~~~~g~~vtv~~~As~-d~-~V~~Ve~~~dg~------~v~~---------------~t~~~ys~~~~~~~   59 (190)
T 3pdd_A            3 TIDSPVAGERFEAGKDINISATVKS-KT-PVSKVEFYNGDT------LISS---------------DTTAPYTAKITGAA   59 (190)
T ss_dssp             EEEESCTTCEEETTSCEEEEEEECC-SS-CEEEEEEEETTE------EEEE---------------ECSSSEEEEECSCC
T ss_pred             EEecCCCCCEEcCCCeEEEEEEEeC-CC-CEEEEEEEECCE------EEcc---------------ccCCceEEEeccCC
Confidence            58999999999988 7999999994 44 999999999974      1211               134567778875  


Q ss_pred             CCccEEEEEEEeCCCCCCCC
Q 022157          255 PHSTQIVAKAVDTAANVQPE  274 (302)
Q Consensus       255 ~g~~~i~~RA~D~~Gn~QP~  274 (302)
                      .|.|+|.+||+|.+||++..
T Consensus        60 ~G~htlta~A~D~aGn~s~s   79 (190)
T 3pdd_A           60 VGAYNLKAVAVLSDGRRIES   79 (190)
T ss_dssp             SEEEEEEEEEEETTSCEEEC
T ss_pred             CccEEEEEEEEECCCCEeee
Confidence            68999999999999999764

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=97.68  E-value=0.00018  Score=62.53  Aligned_cols=78  Identities=19%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             eceEEEEeecCCCeecCC-cEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEEE
Q 022157          174 PVQCVICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVII  252 (302)
Q Consensus       174 ~v~S~I~~P~~~~~v~~G-~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~~  252 (302)
                      ++.-.|+.|.++..+..| .++|.+-|-+..| .|.+|||.+||.      .+....               ...|++.|
T Consensus        91 ~Ptv~itsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~Ve~~~dg~------~v~t~t---------------~~~y~~~~  148 (190)
T 3pdd_A           91 KPTVKLTAPKSNVVAYGNEFLKITATASDSDG-KISRVDFLVDGE------VIGSDR---------------EAPYEYEW  148 (190)
T ss_dssp             CCEEEEEECCTTCCCBTTSEEEEEEEEECSSS-CEEEEEEEETTE------EEEEEC---------------SSSEEEEE
T ss_pred             CCceeecCCCCCcEEecCCeEEEEEEEECCCC-cEEEEEEEECCE------EEeccc---------------CCCEEEEE
Confidence            344568899999988766 7999999976433 699999999984      121111               12455666


Q ss_pred             EC-CCccEEEEEEEeCCCCCCC
Q 022157          253 DI-PHSTQIVAKAVDTAANVQP  273 (302)
Q Consensus       253 ~~-~g~~~i~~RA~D~~Gn~QP  273 (302)
                      .. .|.|+|.+||+|.+||+-.
T Consensus       149 ~~~~G~~tl~a~A~D~aGn~s~  170 (190)
T 3pdd_A          149 KAVEGNHEISVIAYDDDDAAST  170 (190)
T ss_dssp             ECCSEEEEEEEEEEETTCCBCC
T ss_pred             ecCCeeEEEEEEEEECCCCEEe
Confidence            65 7899999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1ogpa2	261	d.176.1.1 (A:2-262) Sulfite oxidase, middle cataly	7e-50
d1ogpa1	127	b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal d	7e-45
d2a9da2	249	d.176.1.1 (A:95-343) Sulfite oxidase, middle catal	4e-37
d2a9da1	123	b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal d	6e-35
d1xdya_	269	d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Esc	6e-19

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 261

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  164 bits (415), Expect = 7e-50
 Identities = 118/137 (86%), Positives = 126/137 (91%)

Query: 35  VWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEA 94
           VW GAKLADVLELVGIP LT+ T  G +HVEFVS+D+CKEENGGPYKASI LSQATNPEA
Sbjct: 125 VWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYKASITLSQATNPEA 184

Query: 95  DVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 154
           DVLLAYEMNGE LNRDHG+PLRVVVPGVIGARSVKWLD+IN++AEE QGFFMQKDYKMFP
Sbjct: 185 DVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMFP 244

Query: 155 PSVNWDNINWKSRRPLM 171
           PSVNWDNINW SRRP M
Sbjct: 245 PSVNWDNINWSSRRPQM 261

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  146 bits (370), Expect = 7e-45
 Identities = 91/127 (71%), Positives = 110/127 (86%)

Query: 172 DFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGI 231
           DFPVQ  ICS+EDV ++KPGK  + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G 
Sbjct: 1   DFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGK 60

Query: 232 PYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWH 291
            YI++H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWH
Sbjct: 61  QYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWH 120

Query: 292 RVQVRVG 298
           RV +R+G
Sbjct: 121 RVLLRLG 127

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  130 bits (328), Expect = 4e-37
 Identities = 65/132 (49%), Positives = 82/132 (62%), Gaps = 6/132 (4%)

Query: 35  VWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEA 94
            W GA+L DVL   G P        G  HV F  +D      G PY ASIP  +A +P A
Sbjct: 119 RWGGARLRDVLLHAGFPEELQ----GEWHVCFEGLDAD--PGGAPYGASIPYGRALSPAA 172

Query: 95  DVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 154
           DVLLAYEMNG  L RDHG+P+RVVVPGV+GARSVKWL  + +  +E    + Q DYK F 
Sbjct: 173 DVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFS 232

Query: 155 PSVNWDNINWKS 166
           P V+WD +++++
Sbjct: 233 PCVDWDTVDYRT 244

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  121 bits (304), Expect = 6e-35
 Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 9/128 (7%)

Query: 172 DFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGI 231
           + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A        
Sbjct: 1   ELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAP 60

Query: 232 PYIADHMSSDKWAWVFFEVIIDIPHSTQ--IVAKAVDTAANVQPESVETIWNLRGVLNTS 289
           P          WAW  +E+ + +   T+  IV KAVD++ NVQP+SV  IWNLRGVL+T+
Sbjct: 61  P-------GRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTA 113

Query: 290 WHRVQVRV 297
           WHRV+V V
Sbjct: 114 WHRVRVSV 121

>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Bacterial sulfite oxidase YedY
species: Escherichia coli [TaxId: 562]

 Score = 82.4 bits (203), Expect = 6e-19
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 34  AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGG-----------PYKA 82
             W G  L  +L L           S  K+V F +I   ++  G            PY  
Sbjct: 93  VPWIGFPLHKLLALAEP-------TSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVE 145

Query: 83  SIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQ 142
            + L +A +P    L+   + G+ L   +G P+R++VP   G + +K + +I +  E   
Sbjct: 146 GLRLDEAMHP--LTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPP 203

Query: 143 GFFMQKDYKMFPPSVN 158
             +       +    N
Sbjct: 204 TTWNLAAPDEYGFYAN 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1ogpa2	261	Sulfite oxidase, middle catalytic domain {Mouse-ea	100.0
d2a9da2	249	Sulfite oxidase, middle catalytic domain {Chicken	100.0
d2a9da1	123	Sulfite oxidase, C-terminal domain {Chicken (Gallu	100.0
d1ogpa1	127	Sulfite oxidase, C-terminal domain {Mouse-ear cres	100.0
d1xdya_	269	Bacterial sulfite oxidase YedY {Escherichia coli [	100.0

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.8e-47  Score=346.55  Aligned_cols=166  Identities=74%  Similarity=1.183  Sum_probs=145.5

Q ss_pred             ChhhhhhCCCeEEEEEEEecCC--CCcCcc----------ceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVR--TNLSFL----------YHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr--~~~~~~----------~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+ +||+++++++|||+|+  ..++++          .+|+|++|+||+|+|||++||++..+.....++++|.|+|
T Consensus        80 l~dL~-~~p~~~~~~~l~C~gN~r~~~~~~~~~~g~~W~~gai~~a~WtGv~L~dlL~~aGv~~~~~~~~~~a~~v~f~g  158 (261)
T d1ogpa2          80 IKDIR-SLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVS  158 (261)
T ss_dssp             HHHHH-TSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEEE
T ss_pred             HHHHh-cCCCEEEEEEEEecccchhcccccccccccCccccccccceEEeeEHHHHHHHhCCccccccccCCceEEEEEe
Confidence            57995 7999999999999993  222211          1899999999999999999999865443445789999999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      +|.....+.+.|.+||||+++|++++|+||||+|||||||++|||||||||||+||++|||||++|+|++++++||||++
T Consensus       159 ~D~~~~~~~~~y~~sipl~~al~~~~dvlLA~~mNGepLp~~hG~PlRLvVPg~~G~~svKWl~~I~v~d~~~~g~w~~~  238 (261)
T d1ogpa2         159 VDRCKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQK  238 (261)
T ss_dssp             SCCCGGGTTCCCEEEEEHHHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHHHS
T ss_pred             cccccccCCCCceeEEEHHHhhCcccceEEEEeeCCcccccccCCcEEEEccCceeeeCceEeeEEEEEecCCCCcceec
Confidence            99766555678999999999998766899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCC
Q 022157          149 DYKMFPPSVNWDNINWKSR  167 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~  167 (302)
                      +|++++|..++++.+|+..
T Consensus       239 ~Y~~~~p~~~~~~~~~~~~  257 (261)
T d1ogpa2         239 DYKMFPPSVNWDNINWSSR  257 (261)
T ss_dssp             SSCCCCTTCCTTTCCGGGS
T ss_pred             CccccCCCCCCcCCCcccc
Confidence            9999999998888887644

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.8e-45  Score=329.78  Aligned_cols=165  Identities=44%  Similarity=0.774  Sum_probs=142.6

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCC--cC---c-------cceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEE
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTN--LS---F-------LYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS   68 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~--~~---~-------~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~   68 (302)
                      |+||+.+||+++++++|||++++.  +.   +       ..+|+|++|+||+|+|||++||+++++    .++.++.|.|
T Consensus        73 l~dL~a~~p~~~~~~~l~Cvgn~~~~~~~~~~~~G~~w~~g~i~~~~W~Gv~L~dlL~~ag~~~~a----~~~~~v~~~g  148 (249)
T d2a9da2          73 LAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEEL----QGEWHVCFEG  148 (249)
T ss_dssp             HHHHHHHSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCC----SSCCEEEEEE
T ss_pred             HHHHHhhCCCEEEEEEEEecccccccccccCCccCccccchhhccccccCccHHHHHHHhCCCccc----cceEEEEecc
Confidence            579976799999999999999422  11   0       117899999999999999999998742    2466899999


Q ss_pred             eccccccCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeee
Q 022157           69 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK  148 (302)
Q Consensus        69 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~  148 (302)
                      .|...+  ...|+++|||+++|++..|+||||+|||||||++|||||||||||+||+||||||++|||++++++||||++
T Consensus       149 ~d~~~~--~~~y~~slpl~~al~~~~d~lLA~~mNGepLp~~hG~PlRLvvPg~yG~ksvKWl~~Ie~~~~~~~g~we~~  226 (249)
T d2a9da2         149 LDADPG--GAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQN  226 (249)
T ss_dssp             EEECTT--CCEEEEEEEHHHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHS
T ss_pred             cccCCC--CcceeeeeEHHHhcCcccceEEEeccCCccCcHHhCceeEEEccceeeeecceeeeEEEEEccCCCCceeeC
Confidence            884322  236999999999998655899999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCCCCCCcCCCCCcc
Q 022157          149 DYKMFPPSVNWDNINWKSRRPLM  171 (302)
Q Consensus       149 ~Y~~~~~~~~~~~~~~~~~~~i~  171 (302)
                      +|+.+.|..+.+..+|.+.++|+
T Consensus       227 gY~~~~p~~~~~~~d~~~~p~~~  249 (249)
T d2a9da2         227 DYKGFSPCVDWDTVDYRTAPAIQ  249 (249)
T ss_dssp             SSCCCCTTCCTTTCCGGGSCCCC
T ss_pred             CccccCCCCCcccCccccCCCCC
Confidence            99999999888888888888775

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.8e-42  Score=281.78  Aligned_cols=120  Identities=45%  Similarity=0.840  Sum_probs=110.4

Q ss_pred             ceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEE
Q 022157          172 DFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI  251 (302)
Q Consensus       172 ~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~  251 (302)
                      +|||||+|+.|.+++.|+.|.++|+||||+|+|++|+|||||+|||+||++|+|..++.       ..+++|+|++|+++
T Consensus         1 em~v~S~I~~P~~~~~v~~g~~~v~G~A~sggg~~I~rVEVS~DgG~tW~~A~l~~~~~-------~~~~~~~W~~W~~~   73 (123)
T d2a9da1           1 ELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA-------PPGRAWAWALWELT   73 (123)
T ss_dssp             BCCCEEEEEESCTTCEECSEEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEECSCCC-------CTTCCCSCEEEEEE
T ss_pred             CCCCCEEEeccCCCCEecCCeEEEEEEEEcCCCceEEEEEEEcCCCCccEEeEecCccC-------CCCceeEEEEEEEE
Confidence            58999999999999999999999999999998899999999999999999999987653       22347999999999


Q ss_pred             EEC--CCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 022157          252 IDI--PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG  298 (302)
Q Consensus       252 ~~~--~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~  298 (302)
                      |++  .+.++|+|||+|++||+||+....+||++||+||+||+|+|+|.
T Consensus        74 ~~~~~~~~~~i~~RA~D~~G~~QP~~~~~~WN~~G~~~n~~~rv~v~V~  122 (123)
T d2a9da1          74 VPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQ  122 (123)
T ss_dssp             EEECTTCEEEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEEC
T ss_pred             EEcCCCCeEEEEEEEEcCCCCcCCCccccccccCCcccCceEEEEEEEE
Confidence            998  45789999999999999999887789999999999999999996

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-42  Score=284.97  Aligned_cols=127  Identities=72%  Similarity=1.256  Sum_probs=114.1

Q ss_pred             ceeceEEEEeecCCCeecCCcEEEEEEEEeCCCCCeEEEEEEcCCCCCcEEeEccCcCCCcccccCCCCCceeeEEeEEE
Q 022157          172 DFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI  251 (302)
Q Consensus       172 ~~~v~S~I~~P~~~~~v~~G~v~i~G~A~sggg~~I~rVEVS~DgG~tW~~A~L~~~~~~~~~~~~~~~~~~~W~~W~~~  251 (302)
                      +|||||+|+.|.+++.|++|+++|+||||||+|++|+|||||+|||+||++|+|..++...+.+.......|+|++|+++
T Consensus         1 e~~v~S~I~~P~~~~~v~~g~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~w~W~~~~~~   80 (127)
T d1ogpa1           1 DFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEAT   80 (127)
T ss_dssp             SCCCEEEECSSCSEEEECSEEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEESSSSSCCCSSSTTSCTTSCEEEEEE
T ss_pred             CCCcCEEEecCCCCCEecCceEEEEEEEEcCCCceEEEEEEEeCCCCccEEeeccCCccccccccccCCcccEEEEEEEE
Confidence            58999999999999999999999999999998899999999999999999999988765322233334457899999999


Q ss_pred             EECCCccEEEEEEEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 022157          252 IDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG  298 (302)
Q Consensus       252 ~~~~g~~~i~~RA~D~~Gn~QP~~~~~~wN~~G~~~n~~h~v~v~v~  298 (302)
                      ++.+|.++|+|||+|++||+||+....+||++||+||+||||+|+|+
T Consensus        81 ~~~~g~~~i~~RA~D~~g~~QP~~~~~~WN~~G~~~N~~~rV~v~V~  127 (127)
T d1ogpa1          81 IDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLG  127 (127)
T ss_dssp             EEESSCEEEEEEEEETTCCBCCSCHHHHCCTTCCCCCCCEEEEEEEC
T ss_pred             ecCCCceEEEEEEECCCCCCCCCccccCcccCCccccceEEEEEEeC
Confidence            98899999999999999999999877789999999999999999995

>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Bacterial sulfite oxidase YedY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-42  Score=315.74  Aligned_cols=140  Identities=21%  Similarity=0.266  Sum_probs=126.4

Q ss_pred             ChhhhhhCCCeEEEEEEEecCCCCcCccceecceeEEceeHHHHHHHcCCCCCCCcccCCceEEEEEEeccccc------
Q 022157            1 MCHLYLNNPKEYINLLLFCAVRTNLSFLYHFLSAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKE------   74 (302)
Q Consensus         1 ~~~L~~~~p~~~~~~~l~C~gr~~~~~~~ai~~a~w~GV~L~dlL~~ag~~~~~~~~~~~a~~v~~~~~D~~~~------   74 (302)
                      |+||+++||+++++++++|+++|++       ++.|+||+|++||+.+|+++       +|++|.|++.|....      
T Consensus        67 l~dL~~~~p~~e~~~~l~Cv~~ws~-------~~~W~Gv~L~~lL~~a~~~~-------~A~~v~~~~~~~~~~~~~~~~  132 (269)
T d1xdya_          67 HDDLTRRFPLEERIYRMRCVEAWSM-------VVPWIGFPLHKLLALAEPTS-------NAKYVAFETIYAPEQMPGQQD  132 (269)
T ss_dssp             HHHHHHTSCCEEEEEEEEETTTEEE-------EEEEEEEEHHHHHHHHCBCT-------TCCEEEEEECCCTTTCGGGTC
T ss_pred             HHHHhhcCCcEEEEEeeecccCcee-------eeeecCcCHHHHHHhcCCCC-------CCcEEEEEEeccccccccccc
Confidence            5799888999999999999998763       78999999999999999997       699999999874221      


Q ss_pred             -----cCCCCeEEEEEchhhcCCCCCEEEEEecCCccCCCCCCCceEEEecCcccccceeeeeeeEEeccccCCceeeec
Q 022157           75 -----ENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD  149 (302)
Q Consensus        75 -----~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepLp~~hG~PlRLvvPg~~G~~~vKwl~~Ie~~~~~~~g~w~~~~  149 (302)
                           ....+|.++|||++||++  ++||||+|||||||++|||||||||||+||+||||||++|+|++++++||||+++
T Consensus       133 ~~~~~~~~~~Y~~slpl~~a~~~--~~lLA~~mNGepLp~~HG~PlRLVVPg~yG~ksvKWl~~I~~~~~~~~g~We~~~  210 (269)
T d1xdya_         133 RFIGGGLKYPYVEGLRLDEAMHP--LTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAA  210 (269)
T ss_dssp             TTTTTTCCSSCEEEEEHHHHHST--TCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCCHHHHHC
T ss_pred             ccccCccccceeccccHHHhcCc--ceeeeeecCCeECchhcCCceEEEcchhhhhcccceeEEEEEEcCCCcchhhhhC
Confidence                 122469999999999996  8999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCC
Q 022157          150 YKMFPPS  156 (302)
Q Consensus       150 Y~~~~~~  156 (302)
                      |+.+...
T Consensus       211 ~~~~g~~  217 (269)
T d1xdya_         211 PDEYGFY  217 (269)
T ss_dssp             TTTCCSS
T ss_pred             ccccCCC
Confidence            9887654