Citrus Sinensis ID: 022163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccccEEccccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccEEEEEccccccccccHHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEccccccccccEEHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
maedrynlknpAVKRILQEVKEmqsnpsddfmslpleeNIFEWQFairgpgdtefeggiyhgriqlpaeypfkppsfmlltpngrfetQTKICLSisnhhpehwqpsWSVRTALVALIAFmptnpngalgsldykKEERRALAIKSreaapkfgtperQKLIDEIHEYmlskappvpqlstceeqpgnregeaqaSSIDAMVTgageglpapvgdRIIEEVQedlpasmnpnpvvagtsrevpanasgvqlqpkpetrvqkpaddrLFTWAAVGLTIAILVLLLKKFMksnghgtvfmdgs
Flexible Loop (DISEMBL)
maedrynlknpavKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNpngalgsldYKKEERRALAIksreaapkfgtpeRQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPAnasgvqlqpkpetrvqkpaDDRLFTWAAVGLTIAILVLLLKKFMKsnghgtvfmdgs
Low Complexity Region (SEG)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered region (IsUnstruct)
*********************************LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL****************************************************************************************************************************************RLFTWAAVGLTIAILVLLLKKFMKSNGH********
Disordered Region (DISOPRED)
**************RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLID********************************************************************************************************FTWAAVGLTIAILVLLLKKFMKSNGHGTVFM***
Disordered Region (DISEMBL)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ*****************SSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Disordered Region (DISPRO)
********KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP*******************************************************************************KPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q9LSP7	309	Ubiquitin-conjugating enz	yes	no	0.980	0.954	0.674	1e-113
Q9Y385	318	Ubiquitin-conjugating enz	yes	no	0.481	0.455	0.650	4e-55
Q9JJZ4	318	Ubiquitin-conjugating enz	yes	no	0.481	0.455	0.650	7e-55
Q6FQK7	246	Ubiquitin-conjugating enz	yes	no	0.445	0.544	0.459	4e-32
Q74Z34	242	Ubiquitin-conjugating enz	yes	no	0.451	0.561	0.437	2e-31
P33296	250	Ubiquitin-conjugating enz	yes	no	0.445	0.536	0.437	4e-31
Q6CMG6	251	Ubiquitin-conjugating enz	yes	no	0.448	0.537	0.441	4e-31
Q8N2K1	259	Ubiquitin-conjugating enz	no	no	0.445	0.517	0.429	8e-31
Q6BYG4	242	Ubiquitin-conjugating enz	yes	no	0.445	0.553	0.451	3e-30
O42646	227	Ubiquitin-conjugating enz	yes	no	0.435	0.577	0.454	3e-30

>sp|Q9LSP7|UBC32_ARATH Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/310 (67%), Positives = 238/310 (76%), Gaps = 15/310 (4%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY
Sbjct: 1   MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPA+YPFKPPSFMLLTPNGRFET TKICLSISN+HPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ-- 178
           MPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA  VP+  
Sbjct: 121 MPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPL 180

Query: 179 LSTCEEQPG-NREGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPV 234
              C + P    E  +Q    +A+       +      V D+IIEE  E    ++N    
Sbjct: 181 PLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAE----AVNTAAS 236

Query: 235 VAGTSREVPANASGVQLQPKPETRV-----QKPADDRLFTWAAVGLTIAILVLLLKKFMK 289
           V   +  +PA    V+     E R+     QKP DDRLFTWAAVGLTIAI+VLLLKKF+K
Sbjct: 237 VVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIK 296

Query: 290 SNGHGTVFMD 299
           SNG+ T FMD
Sbjct: 297 SNGYSTGFMD 306

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q9Y385|UB2J1_HUMAN Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2

 Score =  215 bits (547), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 119/146 (81%), Gaps = 1/146 (0%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct: 61  RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query: 123 TNPNGALGSLDYKKEERRALAIKSRE 148
           T   GA+GSLDY  EERRALA KS++
Sbjct: 121 TKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9JJZ4|UB2J1_MOUSE Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2

 Score =  214 bits (545), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 119/146 (81%), Gaps = 1/146 (0%)

Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct: 2   ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query: 63  RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct: 61  RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query: 123 TNPNGALGSLDYKKEERRALAIKSRE 148
           T   GA+GSLDY  EERRALA KS++
Sbjct: 121 TKGEGAIGSLDYTPEERRALAKKSQD 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6FQK7|UBC6_CANGA Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 1/135 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P EENI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           +KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T      GS
Sbjct: 66  YKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFM-TGDESTTGS 124

Query: 132 LDYKKEERRALAIKS 146
           +   ++E++ LA KS
Sbjct: 125 ITTTQQEKKILAKKS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q74Z34|UBC6_ASHGO Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=UBC6 PE=3 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 1/137 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI  W + I GP +T +E G YHG +  P +YP
Sbjct: 6   AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYP 65

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           F PP+  +LTPNGRF   T++CLS+S++HP+ W PSWSV T L  L++FM T+   ++G+
Sbjct: 66  FNPPAIRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTD-ESSIGT 124

Query: 132 LDYKKEERRALAIKSRE 148
           ++     +R  A KS+E
Sbjct: 125 MESTDSTKRKYAAKSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P33296|UBC6_YEAST Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 88/135 (65%), Gaps = 1/135 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP
Sbjct: 6   AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           +KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T+     GS
Sbjct: 66  YKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFM-TSDEATTGS 124

Query: 132 LDYKKEERRALAIKS 146
           +     +++ LA  S
Sbjct: 125 ITTSDHQKKTLARNS 139

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6CMG6|UBC6_KLULA Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=UBC6 PE=3 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 1/136 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+ +E K + +NP    ++ P E+NI EW + I GP  T +E G YHG +  P++YP
Sbjct: 6   ANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYP 65

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           F PP+  ++TPNGRF+  T++CLS+S++HPE W P+WSV T L  L++FM T      GS
Sbjct: 66  FNPPAIRMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFM-TGDEQTTGS 124

Query: 132 LDYKKEERRALAIKSR 147
           +    +++R LA KS+
Sbjct: 125 VSTSDKDKRTLAKKSK 140

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8N2K1|UB2J2_HUMAN Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 13  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 72

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           FKPPS  ++TPNGRF+  T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 73  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 131

Query: 132 LDYKKEERRALAIKS 146
           ++     +R LA++S
Sbjct: 132 IETSDFTKRQLAVQS 146

Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6BYG4|UBC6_DEBHA Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KR+ +E K +  NP     + P +ENI EW + I GP  T FE G YHG ++ P+EYPFK
Sbjct: 8   KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFK 67

Query: 74  PPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLD 133
           PPS  ++TPNGRF   T++CLS+S++HP+ W P+WSV T L  L++FM T      GS+ 
Sbjct: 68  PPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM-TGDESTTGSIT 126

Query: 134 YKKEERRALAIKSRE 148
                ++ LA  S+E
Sbjct: 127 TSDNVKKRLARSSKE 141

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O42646|UBC6_SCHPO Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KR+++E   +Q NP +   + P  ENI EW + I GP DT +EGG YHG +  P +YP
Sbjct: 6   AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYP 65

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           FKPP+  ++TP+GRF+T T++CLS S+ HP+ W PSW V T LV L++FM T+     G 
Sbjct: 66  FKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM-TSDEITTGG 124

Query: 132 LDYKKEERRALA 143
           +   +  RR  A
Sbjct: 125 IVTSESTRRTYA 136

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the doa10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
224108707	308	predicted protein [Populus trichocarpa]	0.990	0.967	0.781	1e-136
255556356	309	non-canonical ubiquitin conjugating enzy	0.993	0.967	0.785	1e-134
224101573	310	predicted protein [Populus trichocarpa]	0.996	0.967	0.778	1e-134
147790480	297	hypothetical protein VITISV_020701 [Viti	0.973	0.986	0.780	1e-130
225431934	297	PREDICTED: ubiquitin-conjugating enzyme	0.973	0.986	0.777	1e-130
388522695	311	unknown [Lotus japonicus]	0.980	0.948	0.762	1e-129
449432914	297	PREDICTED: ubiquitin-conjugating enzyme	0.970	0.983	0.761	1e-128
356529168	308	PREDICTED: ubiquitin-conjugating enzyme	0.976	0.954	0.745	1e-124
357478955	307	Ubiquitin carrier protein E2 [Medicago t	0.976	0.957	0.747	1e-124
356556010	306	PREDICTED: ubiquitin-conjugating enzyme	0.970	0.954	0.761	1e-123

>gi|224108707|ref|XP_002314941.1| predicted protein [Populus trichocarpa] gi|222863981|gb|EEF01112.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/311 (78%), Positives = 266/311 (85%), Gaps = 13/311 (4%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MA D+YNLKNP+VKRILQEV+EMQS+PSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAVDKYNLKNPSVKRILQEVREMQSSPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTAL+ALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALLALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPT+PNGALGSLDYKKEERR LA+KSREAAP+FGTPERQKLIDEIH+YML KAP VPQ +
Sbjct: 121 MPTSPNGALGSLDYKKEERRVLAVKSREAAPRFGTPERQKLIDEIHQYMLGKAPSVPQQN 180

Query: 181 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-------VGDRIIEEVQEDLPASMN 230
           +    EE PGN EGEAQA   DA V  A E LP P       VG+R+IEEV E  P ++N
Sbjct: 181 SVQGSEEHPGNNEGEAQAQ--DAGVVAAAEELPNPAVGEIQEVGERVIEEVHE-APVNVN 237

Query: 231 PNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKS 290
           P+P     SRE+PA     QL  +P TRVQKPADDRLFTWAAVGLTIAI+VLLLKKFMKS
Sbjct: 238 PSPTGTSVSREIPARGPTDQLLQRPVTRVQKPADDRLFTWAAVGLTIAIVVLLLKKFMKS 297

Query: 291 NGHGTVFMDGS 301
           +G+G +FMDGS
Sbjct: 298 SGYGALFMDGS 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556356|ref|XP_002519212.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis] gi|223541527|gb|EEF43076.1| non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/308 (78%), Positives = 261/308 (84%), Gaps = 9/308 (2%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMS+PLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSMPLEENIFEWQFAIRGPCDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLP+EYPFKPPSF+LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPSEYPFKPPSFLLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPTNPNGALGSLDYKKEERRALAIKSREAAP+FGTPERQKLIDEIH+YMLSKAPPVPQLS
Sbjct: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPRFGTPERQKLIDEIHQYMLSKAPPVPQLS 180

Query: 181 ---TCEEQPGNREGEAQA-----SSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPN 232
                EE    +E EA A      ++ A +          VGDRI+EEV E  P ++NP 
Sbjct: 181 PSQDSEEHHTGKEDEAHAILQEQGAVAANLPNLAVSEQLAVGDRIVEEVPE-APVNVNPG 239

Query: 233 PVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNG 292
                TS E+PA AS  QL  +PETRVQ+PADDRLFTWAAVGLTIAI+VLLLKKF+KS+G
Sbjct: 240 ATGVRTSTEIPARASSDQLLHRPETRVQRPADDRLFTWAAVGLTIAIVVLLLKKFLKSSG 299

Query: 293 HGTVFMDG 300
           HG VFMDG
Sbjct: 300 HGAVFMDG 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101573|ref|XP_002312335.1| predicted protein [Populus trichocarpa] gi|222852155|gb|EEE89702.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/311 (77%), Positives = 258/311 (82%), Gaps = 11/311 (3%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPG+TEFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPT+PNGALGSLDYKKEERR LA+KSREAAP+FGTPERQKLIDEIH+YMLSKAP VPQ +
Sbjct: 121 MPTSPNGALGSLDYKKEERRVLAVKSREAAPRFGTPERQKLIDEIHQYMLSKAPSVPQQN 180

Query: 181 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-------VGDRIIEEVQEDLPASMN 230
                EE P N   E Q SS DA    A E LP P       VG+R+ E+V E    + N
Sbjct: 181 PAQGSEEHPNNSVCETQESSPDAEAVTAAEDLPNPAVGEIQEVGERVFEQVHE-AHITAN 239

Query: 231 PNPVVAGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKS 290
           P+P     SREVPA  S  QL  +  TRVQKPADDRLFTWAAVGL IAI+VLLLKKFMKS
Sbjct: 240 PSPAGTSASREVPAKCSSDQLLQRQVTRVQKPADDRLFTWAAVGLAIAIVVLLLKKFMKS 299

Query: 291 NGHGTVFMDGS 301
           +G+G  FMDGS
Sbjct: 300 SGYGAFFMDGS 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790480|emb|CAN72172.1| hypothetical protein VITISV_020701 [Vitis vinifera]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/305 (78%), Positives = 257/305 (84%), Gaps = 12/305 (3%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPAEYPF+PPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPT+PNGALGSLDYKKEER ALAIKSREAAPKFGTPERQKLIDEIHEYMLSK+PPVPQL+
Sbjct: 121 MPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPVPQLN 180

Query: 181 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-VGDRIIEEVQEDLPASMNPNPVVA 236
           +    EE   NREGE Q +  +     A + L  P V DRI+EE    +P + NP+PV  
Sbjct: 181 SSQAPEEPSTNREGEGQTNPPNGSAIAAADELSDPRVADRIVEEEPPQVPLNANPSPV-- 238

Query: 237 GTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTV 296
             SR+    AS V+L  KP  RVQ+ ADDRL TWAAVGLTIAI+VLLLKKF+KS+GHG V
Sbjct: 239 --SRQ----ASAVRLLQKPVPRVQRQADDRLLTWAAVGLTIAIMVLLLKKFLKSSGHGAV 292

Query: 297 FMDGS 301
           FMD S
Sbjct: 293 FMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431934|ref|XP_002277394.1| PREDICTED: ubiquitin-conjugating enzyme E2 32 [Vitis vinifera] gi|296083258|emb|CBI22894.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/305 (77%), Positives = 256/305 (83%), Gaps = 12/305 (3%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNP VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIY
Sbjct: 1   MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPAEYPF+PPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFQPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPT+PNGALGSLDYKKEER ALAIKSREAAPKFGTPERQKLIDEIHEYMLSK+PPVPQL+
Sbjct: 121 MPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPVPQLN 180

Query: 181 TC---EEQPGNREGEAQASSIDAMVTGAGEGLPAP-VGDRIIEEVQEDLPASMNPNPVVA 236
           +    EE   NREGE Q +  +     A + L  P V DRI+EE    +P + NP+PV  
Sbjct: 181 SSQAPEEPSTNREGEGQTNPPNGSAIAAADELSDPRVADRIVEEEPPQVPLNANPSPV-- 238

Query: 237 GTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTV 296
             SR+    AS  +L  KP  RVQ+ ADDRL TWAAVGLTIAI+VLLLKKF+KS+GHG V
Sbjct: 239 --SRQ----ASAARLLQKPMPRVQRQADDRLLTWAAVGLTIAIMVLLLKKFLKSSGHGAV 292

Query: 297 FMDGS 301
           FMD S
Sbjct: 293 FMDES 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522695|gb|AFK49409.1| unknown [Lotus japonicus]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/312 (76%), Positives = 257/312 (82%), Gaps = 17/312 (5%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFM+LPLEENIFEWQFAIRGPGDTEFEGGI+HGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMNLPLEENIFEWQFAIRGPGDTEFEGGIFHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
           IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 124 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS--- 180
           NPNGALGSLDYKKEERRALAIKSREA+PKFGTPERQ+LIDEIHEYMLSKAPPVPQ+S   
Sbjct: 123 NPNGALGSLDYKKEERRALAIKSREASPKFGTPERQRLIDEIHEYMLSKAPPVPQVSPTQ 182

Query: 181 TCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 240
             EEQP   E + Q    +     AGE +P    DRIIEE  +++  + NPNP     S 
Sbjct: 183 ASEEQPPIEEDQTQVQLHNPEALPAGEVIPDQSVDRIIEE--QEVTVNANPNPSEVEAST 240

Query: 241 EVPAN--ASGVQLQP---------KPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMK 289
           E P+N  +S   LQ          KPETRVQKP DDRLFTWAA+GLTIAI+VLLLKKF+K
Sbjct: 241 ETPSNVVSSNQLLQNSETTRGQNLKPETRVQKP-DDRLFTWAAIGLTIAIVVLLLKKFIK 299

Query: 290 SNGHGTVFMDGS 301
           S  HG VFMDGS
Sbjct: 300 STEHGAVFMDGS 311

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432914|ref|XP_004134243.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus] gi|449503860|ref|XP_004162210.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Cucumis sativus]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/306 (76%), Positives = 256/306 (83%), Gaps = 14/306 (4%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           MAED+YNLKNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGD+EFEGGIY
Sbjct: 1   MAEDKYNLKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDSEFEGGIY 60

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF
Sbjct: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120

Query: 121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS 180
           MPTNPNGALGSLDYKKEERR LAIKSREA PKFGTPERQKLIDEIHEYMLSKAPPVPQ  
Sbjct: 121 MPTNPNGALGSLDYKKEERRVLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQSG 180

Query: 181 TCE---EQPGNREGEAQASSIDAMVTGAGEGLP-APVGDRIIEEVQEDLPASMNPNPVVA 236
           + +   E+P N E + Q +S  A +  A E L  +P  +RI+EE   ++       P VA
Sbjct: 181 STDVSGEKPTNEEADVQVTSETAELAAAVEELQNSPTINRIVEEAVPEV------QPEVA 234

Query: 237 GTSREVPANASGVQL-QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGT 295
              R  P++    Q  Q +PETRV KPADDRLFTWAA+GLT+AI+VLLLKKFMK++ HG+
Sbjct: 235 ---RVAPSSRPTTQTEQGRPETRVHKPADDRLFTWAAIGLTLAIVVLLLKKFMKASAHGS 291

Query: 296 VFMDGS 301
           VFMD S
Sbjct: 292 VFMDES 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529168|ref|XP_003533168.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/310 (74%), Positives = 249/310 (80%), Gaps = 16/310 (5%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQE+KEM SNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQELKEMNSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
           IQLP+EYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 124 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLS--- 180
           NPNGALGSLDYKKEERR LA+KSREA PKFGTPERQKLIDEIHEYM+SKAPPVPQ S   
Sbjct: 123 NPNGALGSLDYKKEERRTLAVKSREAPPKFGTPERQKLIDEIHEYMVSKAPPVPQPSASE 182

Query: 181 TCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 240
             EE P N E E  A+S++     AGE +     D I+EE +E L    N NP     SR
Sbjct: 183 ASEENPRNEEAETHANSLNPESLTAGEVILDQEVDGIVEEQEEVL---ANANPAGVEASR 239

Query: 241 EVPANASGVQL---------QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSN 291
           EV  + S  ++          PKPETRVQKP DDRLFT AA+GLTIAI+VLLLKKF+KS 
Sbjct: 240 EVQPSVSRYEVLQKSDTRVQNPKPETRVQKP-DDRLFTLAAIGLTIAIVVLLLKKFIKST 298

Query: 292 GHGTVFMDGS 301
            HG +F DGS
Sbjct: 299 QHGALFSDGS 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478955|ref|XP_003609763.1| Ubiquitin carrier protein E2 [Medicago truncatula] gi|355510818|gb|AES91960.1| Ubiquitin carrier protein E2 [Medicago truncatula]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/309 (74%), Positives = 251/309 (81%), Gaps = 15/309 (4%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YN+KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP +TEFEGGIYHGR
Sbjct: 3   DKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRETEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
           IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 124 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCE 183
           NPNGALGSLDYKKE+RRALAIKSREA+PKFGTPERQKLIDEIHEYMLS A  VPQ S  +
Sbjct: 123 NPNGALGSLDYKKEDRRALAIKSREASPKFGTPERQKLIDEIHEYMLSMAAVVPQPSPLQ 182

Query: 184 --EQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSRE 241
             E+P N E E Q +  +     AGEG+P   GD I+EE  +++  + NPNP     S E
Sbjct: 183 ASEEPKNEEAETQVTQ-NPEAPPAGEGIPDQAGDGIVEE--QEVNVNANPNPAGVEASNE 239

Query: 242 VPANASGVQL---------QPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNG 292
            P+  S  QL           KPETRVQKP DDRLFT AA+GL IAI+VLLLKKF+KS  
Sbjct: 240 TPSGVSTNQLPRKSDTRVQNLKPETRVQKP-DDRLFTLAAIGLAIAIMVLLLKKFIKSTE 298

Query: 293 HGTVFMDGS 301
           HG VFM+GS
Sbjct: 299 HGAVFMNGS 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556010|ref|XP_003546320.1| PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/310 (76%), Positives = 249/310 (80%), Gaps = 18/310 (5%)

Query: 4   DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           D+YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGP DTEFEGGIYHGR
Sbjct: 3   DKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGR 62

Query: 64  IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
           IQLP+EYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT
Sbjct: 63  IQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 122

Query: 124 NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC- 182
           NPNGALGSLDYKKEER  LAIKSREA PKFGTPERQKLIDEIHEYMLSKAPPVPQ S   
Sbjct: 123 NPNGALGSLDYKKEERHTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATE 182

Query: 183 --EEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 240
             EE P N E E Q +S +     AGEG+     D I+EE QE + A    NP     SR
Sbjct: 183 ASEENPRNEEAETQVNSPNPESLPAGEGITDQEVDGIVEE-QEVILA----NPAGVEVSR 237

Query: 241 EV-PANASGVQLQ--------PKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSN 291
           EV P+ +    LQ        PKPETRVQK  DDRLFT AA+GLTIAI+VLLLKKF+KS 
Sbjct: 238 EVQPSVSRNEVLQKSDTRAQNPKPETRVQK-HDDRLFTLAAIGLTIAIVVLLLKKFLKST 296

Query: 292 GHGTVFMDGS 301
            HG +F DGS
Sbjct: 297 QHGALFSDGS 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2086067	309	UBC32 "AT3G17000" [Arabidopsis	0.993	0.967	0.686	7.5e-105
UNIPROTKB|F1ND91	317	UBE2J1 "Uncharacterized protei	0.847	0.804	0.451	3.8e-53
MGI|MGI:1926245	318	Ube2j1 "ubiquitin-conjugating	0.837	0.792	0.438	5.6e-52
ZFIN|ZDB-GENE-040426-2853	314	ube2j1 "ubiquitin-conjugating	0.827	0.792	0.436	5.6e-52
UNIPROTKB|Q9Y385	318	UBE2J1 "Ubiquitin-conjugating	0.481	0.455	0.650	1.5e-51
UNIPROTKB|F1S0C9	318	UBE2J1 "Uncharacterized protei	0.481	0.455	0.650	1.5e-51
RGD|1305067	248	Ube2j1 "ubiquitin-conjugating	0.481	0.584	0.650	1.5e-51
DICTYBASE|DDB_G0281369	401	DDB_G0281369 "Ubiquitin-conjug	0.475	0.356	0.636	5.1e-51
UNIPROTKB|F1MBQ2	318	UBE2J1 "Uncharacterized protei	0.830	0.786	0.418	1.4e-48
UNIPROTKB|E2R4Q6	317	UBE2J1 "Uncharacterized protei	0.451	0.429	0.642	2e-47

TAIR|locus:2086067 UBC32 "AT3G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 210/306 (68%), Positives = 236/306 (77%)

Query:     1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
             MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY
Sbjct:     1 MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60

Query:    61 HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
             HGRIQLPA+YPFKPPSFMLLTPNGRFET TKICLSISN+HPEHWQPSWSVRTALVALIAF
Sbjct:    61 HGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAF 120

Query:   121 MPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQ-L 179
             MPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA  VP+ L
Sbjct:   121 MPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPL 180

Query:   180 ST-CEEQPGN-REGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPV 234
                C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  P 
Sbjct:   181 PLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPA 240

Query:   235 VAGTSR-EVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGH 293
              A     EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSNG+
Sbjct:   241 AAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGY 300

Query:   294 GTVFMD 299
              T FMD
Sbjct:   301 STGFMD 306

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|F1ND91 UBE2J1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 120/266 (45%), Positives = 161/266 (60%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GGIYHG
Sbjct:     2 EARYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGIYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSREAAPKF-GTPERQKLIDEIHEYMLSKAPP-----V 176
             T   GA+GSLDY  EERRALA KS++   +  GT  +  L+        S+A        
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQDFCCEMCGTSMKTALLPLTSGSGSSQADKEAKELA 180

Query:   177 PQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVA 236
              Q+S   E   +R+ EA+ S+   +   A    P P  D   +  +    A     P   
Sbjct:   181 RQISFKAEVHSSRKSEAEPSNSAGLNCSATS--PEPQQDGATQAFRGPASAMSEAQPSST 238

Query:   237 GTSRE-VPANASGVQLQPKPETRVQK 261
                +E  P+  +   L P+ + R Q+
Sbjct:   239 APGQERAPSVPTNTSLSPR-QRRAQQ 263

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

MGI|MGI:1926245 Ube2j1 "ubiquitin-conjugating enzyme E2J 1" [Mus musculus (taxid:10090)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 117/267 (43%), Positives = 160/267 (59%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTC 182
             T   GA+GSLDY  EERRALA KS++   + G     K      + +L    P+   S  
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQDFCCE-GCGSAMK------DVLL----PLKSGSGS 169

Query:   183 EEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRI--IEEVQEDLPASMNPNPVVAGTSR 240
              +     +  A+  S  A V  +G+ +     ++   + + Q+DLP +            
Sbjct:   170 SQADQEAKELARQISFKAEVNSSGKTIAESDLNQCFSLNDSQDDLPTTFQGATASTSYGA 229

Query:   241 EVPANASGVQ-LQPKPETRVQKPADDR 266
             + P+ A   Q  QP P+     P   R
Sbjct:   230 QNPSGAPLPQPTQPAPKNTSMSPRQRR 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

ZFIN|ZDB-GENE-040426-2853 ube2j1 "ubiquitin-conjugating enzyme E2, J1" [Danio rerio (taxid:7955)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 113/259 (43%), Positives = 157/259 (60%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E +YNLK+PAVKR+++E  E++ +P++ + + PLE+N+FEW F++RGP D++F+GG+YHG
Sbjct:     2 ESKYNLKSPAVKRLMKEAAELR-DPTEHYHAQPLEDNLFEWHFSVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLTPNGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTPNGRFEVGKKICLSISGHHPETWQPSWSIRTALIAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSRE-AAPKFGTPERQKLIDEIHEYMLSKAPP--VPQL 179
             T   GA+GSLDY  EER+ALA KS++       +  R  L+    +  L  A P  + Q 
Sbjct:   121 TKGEGAIGSLDYTPEERKALAKKSQDFCCEACSSCMRSALLPLSPDSDLRPADPQRLAQQ 180

Query:   180 STCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTS 239
                + +  +   ++ +SS  A    +     +   D+  E+           + V   TS
Sbjct:   181 INFKAESSSSAADSSSSSSAAAEVFSNTSESSETADQDTEDTSA--AEQTESSSVAPQTS 238

Query:   240 REVPANASGVQLQPKPETR 258
              E P+    V   P P  R
Sbjct:   239 AEDPS----VSAAPSPRQR 253

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9Y385 UBE2J1 "Ubiquitin-conjugating enzyme E2 J1" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 95/146 (65%), Positives = 119/146 (81%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSRE 148
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

UNIPROTKB|F1S0C9 UBE2J1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 95/146 (65%), Positives = 119/146 (81%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSRE 148
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

RGD|1305067 Ube2j1 "ubiquitin-conjugating enzyme E2, J1" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 95/146 (65%), Positives = 119/146 (81%)

Query:     3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
             E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHG
Sbjct:     2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG 60

Query:    63 RIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
             RI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMP
Sbjct:    61 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP 120

Query:   123 TNPNGALGSLDYKKEERRALAIKSRE 148
             T   GA+GSLDY  EERRALA KS++
Sbjct:   121 TKGEGAIGSLDYTPEERRALAKKSQD 146

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

DICTYBASE|DDB_G0281369 DDB_G0281369 "Ubiquitin-conjugating enzyme E2 J1" [Dictyostelium discoideum (taxid:44689)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 91/143 (63%), Positives = 117/143 (81%)

Query:     4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
             D  N  NPAVKRIL+E++E++++ + D+ + PLE+NIFEW F IRGP D++F GGIYHGR
Sbjct:     2 DSCNPNNPAVKRILREIQELRNDTNPDYKAFPLEDNIFEWHFTIRGPQDSDFNGGIYHGR 61

Query:    64 IQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
             I LP+EYPFKPP+ +LLTPNGRFET  KICL++S HHPEHWQPSWS+RT LVALI FMPT
Sbjct:    62 IILPSEYPFKPPNIVLLTPNGRFETNVKICLTVSAHHPEHWQPSWSIRTVLVALIGFMPT 121

Query:   124 NPNGALGSLDYKKEERRALAIKS 146
                GA+G++D   ++R+ LA+KS
Sbjct:   122 EGKGAIGAIDLPTKDRKELALKS 144

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1MBQ2 UBE2J1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 111/265 (41%), Positives = 160/265 (60%)

Query:     5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
             RY +++ +VKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI
Sbjct:     4 RYLIRSVSVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRI 62

Query:    65 QLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTN 124
              LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT 
Sbjct:    63 VLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTK 122

Query:   125 PNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEE 184
               GA+GSLDY  EERRALA KS++   + G     K      + +L    P+   S   +
Sbjct:   123 GEGAIGSLDYTPEERRALAKKSQDFCCE-GCGFAMK------DILL----PLKSGSDSSQ 171

Query:   185 QPGNREGEAQASSIDAMVTGAGEGLP-APVGDRI-IEEVQEDLPASMNPNPVVAGTSREV 242
                  +  A+  S  A V  +G+ +  + +     + ++Q+D+PA+            + 
Sbjct:   172 ADQEAKELARQISFKAEVNSSGKTIAESDLNHSFSLNDLQDDIPATFQGATASTSYGTQN 231

Query:   243 PANASGVQ-LQPKPETRVQKPADDR 266
             P+ AS  Q  QP  ++    P   R
Sbjct:   232 PSAASLQQPAQPVAKSTSMSPRQRR 256

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E2R4Q6 UBE2J1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 88/137 (64%), Positives = 111/137 (81%)

Query:    12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             AVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP
Sbjct:    10 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYP 68

Query:    72 FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
              KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GS
Sbjct:    69 MKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGS 128

Query:   132 LDYKKEERRALAIKSRE 148
             LDY  EERRALA KS++
Sbjct:   129 LDYTPEERRALAKKSQD 145

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSP7	UBC32_ARATH	6, ., 3, ., 2, ., 1, 9	0.6741	0.9800	0.9546	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.991
3rd Layer	6.3.2	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	8e-44
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-29
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-29
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	1e-29
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-16
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	1e-10

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  146 bits (370), Expect = 8e-44
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 9/138 (6%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
            KR+ +E+K+++ +P     + P+EEN+ EW   IRGP DT +EGGI+   I+ P +YPF
Sbjct: 1   SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 73  KPPS--FMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALG 130
           KPP   F+    +   +   KICLSI   H   W P++++RT L++L + +   PN +  
Sbjct: 61  KPPKVRFVTKIYHPNVDENGKICLSILKTH--GWSPAYTLRTVLLSLQSLL-NEPNPSDP 117

Query: 131 SLDYKKEERRALAIKSRE 148
                  E   L  ++RE
Sbjct: 118 L----NAEAAKLYKENRE 131

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  110 bits (276), Expect = 1e-29
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 7/121 (5%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            A+KR+L+E+K++Q +P     + P+++ N+F W+  I GP DT +EGGI+   ++ P +
Sbjct: 5   SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPED 64

Query: 70  YPFKPPSFMLLTPNGRF--ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 127
           YPFKPP     T       +    +CL I     + W P +++ T L++L + +  +PN 
Sbjct: 65  YPFKPPKVRFTTKIFHPNVDPSGNVCLDILK---DRWSPVYTLETILLSLQSLL-LSPNP 120

Query: 128 A 128
            
Sbjct: 121 D 121

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  109 bits (275), Expect = 1e-29
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 17/120 (14%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           R+ +E+KE+  +P     + P+++N+FEW+  I GP  T +EGG++   I+ P +YPFKP
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 75  PSFMLLT--------PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           P     T        P+G       ICL I     E+W P+ ++   L+++ + + + PN
Sbjct: 61  PKVKFTTKIYHPNVDPSGE------ICLDIL--KDENWSPALTIEQVLLSIQSLL-SEPN 111

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  109 bits (274), Expect = 1e-29
 Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query: 15  RILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           R+L+E+KE++ +P   F + P+ +EN+ EW   I GP  T +EGG++   I+ P +YPFK
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 74  PPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PP    +T   +   ++  +ICL I     E W P+ ++ T L++L + + + PN
Sbjct: 61  PPKVKFITKIYHPNVDSSGEICLDI--LKQEKWSPALTLETVLLSLQSLL-SEPN 112

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KRI +E K++  +P  +  + P +EN+F W  +I GP D+ + GG++   I  P +YP
Sbjct: 2   ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYP 61

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I     + W P+ +V   L+++ + + T+PN
Sbjct: 62  FKPPKVQFTTKIYHPN--INSNGSICLDILR---DQWSPALTVSKVLLSISSLL-TDPN 114

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI +E + + ++P     + P   N   ++  + GP  T +EGG Y   + LP +YP +
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           PP    LT    PN   +   +ICL I     + W P+  +RT L+++ A +
Sbjct: 65  PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 111

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.98
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.93
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.92
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.61
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.59
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.55
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.06
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.12
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.06
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.85
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.27
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.09
KOG3357	167	consensus Uncharacterized conserved protein [Funct	96.51
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	94.86
smart00591	107	RWD domain in RING finger and WD repeat containing	94.05
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	94.02
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	87.35

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-52  Score=376.93  Aligned_cols=296  Identities=45%  Similarity=0.687  Sum_probs=248.0

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      |++.+||..+++.|||+||.++|+ +|...+.+.|.++|+|+|+++|+||.||-||||+||.+|.||.|||++||.+..+
T Consensus         1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL   79 (314)
T KOG0428|consen    1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL   79 (314)
T ss_pred             CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence            788999999999999999999999 7888899999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCCCchhhhHhhHHhHHHHHHHHHHHHhh-hCChhHH
Q 022163           81 TPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK-FGTPERQ  159 (301)
Q Consensus        81 TPn~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~~~l~A~~~~~edr~~f~~kare~~~k-ya~~~r~  159 (301)
                      |||++|..+.+|||+|.++||+.|.|+|+|++.|++|+.+|.+.|++++++++|-.++|+..++++++|.+| |++..++
T Consensus        80 TpNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~  159 (314)
T KOG0428|consen   80 TPNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCKGCGSAMKD  159 (314)
T ss_pred             cCCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCccccCChhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988 8888888


Q ss_pred             HHH----H-HHHHHHhcCCCCCCCCCC---CCCCCCCCccccccccCCcccccCCCCCCC---CCCCchhhhhhh-ccCC
Q 022163          160 KLI----D-EIHEYMLSKAPPVPQLST---CEEQPGNREGEAQASSIDAMVTGAGEGLPA---PVGDRIIEEVQE-DLPA  227 (301)
Q Consensus       160 ~l~----~-~~~~~~~~~~~~vP~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~  227 (301)
                      .++    + +++++..++...++-.++   +.+...-++...+.++...+-....+|.++   ..++... +.++ ..++
T Consensus       160 ~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et~~~~e~~s~~T~~~~~~~~~a-~~~e~~~~V  238 (314)
T KOG0428|consen  160 VLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSETDLQDEIASASTSYGLQNSSAA-SFHEPTQPV  238 (314)
T ss_pred             eeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccccchhhhhcccccccccchhhh-hhcCCCccc
Confidence            877    4 788887777777777666   344444566666766666655555555554   2222222 3332 3333


Q ss_pred             CCCCCCCC---CCCcccccCCCCccccCCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCceeeccC
Q 022163          228 SMNPNPVV---AGTSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG  300 (301)
Q Consensus       228 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (301)
                      +.|++...   +-..++..-+.|+.-+++...+..+++.||  +||++|||||||++|++|+|+++|||-.-|||.
T Consensus       239 n~n~S~vP~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~viltiAl~~lif~~~~lan~y~~dfmd~  312 (314)
T KOG0428|consen  239 NKNTSMVPQRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLIVILTIALAALIFRRIYLANEYIFDFMDF  312 (314)
T ss_pred             ccccccCchhcccccccceecCCchhhhccCcccccCCCCC--ceehHHHHHHHHHHHHHHHHHHhccceeccccc
Confidence            33333222   224455556777777888888999999777  999999999999999999999999999999974

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-42  Score=293.39  Aligned_cols=141  Identities=30%  Similarity=0.666  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ   89 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~   89 (301)
                      +.+||.||+++|++++++||.+.|.++|+++|+++|.||.+||||||+|++.|.||++|||+||+|+|.|+++  ||+..
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~   81 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN   81 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999987  67788


Q ss_pred             CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |+||+|||+   +.|+|+++|+.||.+|++||.+ ||++++.  ++..|+.|+.+|.+.||+||+|||.
T Consensus        82 G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   82 GRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             ccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            999999998   7899999999999999999976 8899886  4688899999999999999999985

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-42  Score=293.03  Aligned_cols=144  Identities=31%  Similarity=0.693  Sum_probs=135.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      +..+.+||++|++.|+++++++|++.|..+ |+++|++.|.||.+||||||+|++.|.||++||++||+|+|.|+++  |
T Consensus         3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN   82 (153)
T COG5078           3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN   82 (153)
T ss_pred             chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence            344999999999999999999999999987 9999999999999999999999999999999999999999999987  5


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |+.+|+|||+||+   ++|+|+++|++||.+|++||.+ |++++++  |+.++++|+++|.++||+|+++|+.
T Consensus        83 V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          83 VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            7777999999998   8999999999999999999976 7778877  6789999999999999999999874

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.3e-38  Score=274.04  Aligned_cols=142  Identities=28%  Similarity=0.547  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ   89 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~   89 (301)
                      +.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++  ||+.+
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~   82 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   82 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999876  68889


Q ss_pred             CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      |.||+++|+   +.|+|+++|++||.+|++||.+ +|+++++  ++++|++|++.|.++||+|+++|+..
T Consensus        83 G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~  149 (152)
T PTZ00390         83 GRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH  149 (152)
T ss_pred             CeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            999999997   8899999999999999999965 7788877  67889999999999999999999963

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=4.7e-38  Score=269.20  Aligned_cols=141  Identities=31%  Similarity=0.637  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ   89 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~   89 (301)
                      +.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++  ||+.+
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999876  68889


Q ss_pred             CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |.||+++|+   +.|+|+++|++||.+|++||.+ +++++++  |+++|.+|+++|+++||+|+++|+.
T Consensus        82 G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  147 (147)
T PLN00172         82 GSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT  147 (147)
T ss_pred             CEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            999999997   8899999999999999999965 7778776  5788999999999999999999873

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=262.29  Aligned_cols=142  Identities=29%  Similarity=0.624  Sum_probs=133.1

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      |+.+|.|||++|+++|+++++.||++.|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++..+  |
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN   80 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN   80 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999654  6


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      ||.+|.+|+|+|.   ..|+|.|++..||.+||+||.+ ||+++.|  |+.++.+++++|.+++++.+.+
T Consensus        81 vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq  147 (152)
T KOG0419|consen   81 VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ  147 (152)
T ss_pred             cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence            8999999999998   7899999999999999999965 6777765  6799999999999999988754

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-34  Score=254.91  Aligned_cols=156  Identities=41%  Similarity=0.847  Sum_probs=138.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecC
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFET   88 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~   88 (301)
                      +..+.|||+|||+.|+++|+++|.++|.++||.+||.+|.||+||||+||.|+.+|.||.+|||+||.|+++|||++|-.
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt   82 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT   82 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCCCchhhhHhhHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHH
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHE  167 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~~~l~A~~~~~edr~~f~~kare~~~kya~~~r~~l~~~~~~  167 (301)
                      +.++||+|.++||+.|+|.|+|.+||.+|.++|.++ ....++......+++.|++.+..+-  +-...+.++..|+.+
T Consensus        83 ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~~kr~lA~~SlaFN--~kn~~F~~lFPE~Ve  158 (244)
T KOG0894|consen   83 NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQDKRMLAKSSLAFN--LKNPKFCELFPEVVE  158 (244)
T ss_pred             CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHHHHHHHHHhhhhhc--cCChHHHHHhHHHHH
Confidence            999999999999999999999999999999999653 2345566666788999999887776  334445555555443

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-34  Score=238.66  Aligned_cols=147  Identities=23%  Similarity=0.498  Sum_probs=133.7

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~-----dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      ||..++.||+.|-+.|.++.+.||++.|..     .|++.|+|.|.|+.+|+||||.|.++|.||++||++||+++|.+|
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            677899999999999999999999999983     389999999999999999999999999999999999999999998


Q ss_pred             Cc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           83 NG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        83 n~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      .+  |||..|.|||+||+.. .+|+|+.||.+||++|+.||.+ |+.++.+  |...|.+||.+|++++|.++++|+.
T Consensus        81 l~HPNVypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   81 LFHPNVYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             CcCCCcCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            65  7899999999999842 4599999999999999999954 6666644  6788899999999999999999874

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-34  Score=246.55  Aligned_cols=160  Identities=29%  Similarity=0.489  Sum_probs=142.1

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p---~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      |++ +.+||++|++++.+++   -.||.+....+|+.+..+.|.||+|||||||+|.+.|.+|++|||+||+|+|.|.++
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw   79 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW   79 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence            677 9999999999999988   679999999999999999999999999999999999999999999999999999776


Q ss_pred             eec---CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchhh--hHhhHHhHHHHHHHHHHHHhhhCCh--
Q 022163           85 RFE---TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP--  156 (301)
Q Consensus        85 nv~---~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~A--~~~~~edr~~f~~kare~~~kya~~--  156 (301)
                      |.+   .+|.||||+|+   +.|.+++|++++|++||++|.. +|.++..|  ++.|.++++.|.+.||.|+..||+.  
T Consensus        80 HPnVSs~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~  156 (200)
T KOG0418|consen   80 HPNVSSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRL  156 (200)
T ss_pred             cCCCCcccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC
Confidence            433   36999999998   8999999999999999999975 77777766  4677799999999999999999986  


Q ss_pred             ----hHHHHHHHHHHHHhc
Q 022163          157 ----ERQKLIDEIHEYMLS  171 (301)
Q Consensus       157 ----~r~~l~~~~~~~~~~  171 (301)
                          ...++++++.++..+
T Consensus       157 ~~~~~~~~~v~~l~~mGf~  175 (200)
T KOG0418|consen  157 PDDPWDKKKVDSLIEMGFS  175 (200)
T ss_pred             CCCchhHHHHHHHHHhccc
Confidence                346677777765443

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-33  Score=232.02  Aligned_cols=144  Identities=29%  Similarity=0.655  Sum_probs=129.0

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--   84 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--   84 (301)
                      |+..|+|||++||++|..++++||.+.|. ++|+++|.|.|.||++|+|+||+|..++.||.|||.+||+++|..-++  
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP   80 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP   80 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence            66789999999999999999999999998 689999999999999999999999999999999999999999987443  


Q ss_pred             eecCCCcEEeccCCCC----------CCCCCccccHHHHHHHHHHhCCCCCCCc----hhhhHhhHHhHHHHHHHHHHHH
Q 022163           85 RFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPTNPNGA----LGSLDYKKEERRALAIKSREAA  150 (301)
Q Consensus        85 nv~~~G~IClsiL~~~----------~e~WsP~~tI~~IL~~I~~lL~~nP~~~----l~A~~~~~edr~~f~~kare~~  150 (301)
                      ||+.+|+||++||...          .+.|+|.++++.||.++.++| ..|++.    ..|..++++||.+|.+.+|..+
T Consensus        81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEPNdESgANvdA~~mWRe~R~ef~~i~~~lv  159 (165)
T KOG0426|consen   81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEPNDESGANVDACKMWREDREEFEKIAKRLV  159 (165)
T ss_pred             cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence            5899999999999542          268999999999999999999 555543    3367899999999999999887


Q ss_pred             hh
Q 022163          151 PK  152 (301)
Q Consensus       151 ~k  152 (301)
                      .|
T Consensus       160 rK  161 (165)
T KOG0426|consen  160 RK  161 (165)
T ss_pred             HH
Confidence            65

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-33  Score=234.45  Aligned_cols=141  Identities=29%  Similarity=0.605  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCC-CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~-dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      .+..-|+++|++|++++..|+.+...+ +|+++|.|.|.||++|+||||+|+..+.||.|||++||+++|.|.++  |||
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy   84 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY   84 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence            477889999999999999999997775 59999999999999999999999999999999999999999999765  689


Q ss_pred             CCCcEEeccCCCCC----------CCCCccccHHHHHHHHHHhCCCCCCC--c--hhhhHhhHHhHHHHHHHHHHHHhh
Q 022163           88 TQTKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNG--A--LGSLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        88 ~~G~IClsiL~~~~----------e~WsP~~tI~~IL~~I~~lL~~nP~~--~--l~A~~~~~edr~~f~~kare~~~k  152 (301)
                      .+|+||++||....          +.|.|..|+++||++|++|| +.|++  +  +.|+..|++++++|.++++.++.+
T Consensus        85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL-~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~  162 (171)
T KOG0425|consen   85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISML-NSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR  162 (171)
T ss_pred             CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHH-cCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence            99999999996421          68999999999999999999 55543  3  236788899999999999998865

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=3.9e-33  Score=235.46  Aligned_cols=134  Identities=39%  Similarity=0.791  Sum_probs=117.5

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCCc
Q 022163           15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQTK   91 (301)
Q Consensus        15 RL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G~   91 (301)
                      ||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+++  ||+.+|+
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999986 9999999999999999999999999999999999999999999765  6888999


Q ss_pred             EEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163           92 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA  150 (301)
Q Consensus        92 IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~  150 (301)
                      ||+++|+  .+.|+|.++|.+||.+|+++|.+ +++++++  |+.++++|+++|.++||+|.
T Consensus        81 icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   81 ICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             chhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            9999997  34699999999999999999954 5566665  57888999999999999873

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=2.8e-32  Score=230.70  Aligned_cols=135  Identities=38%  Similarity=0.750  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCCc
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQTK   91 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G~   91 (301)
                      |||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++  ||+.+|.
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~   81 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK   81 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999765  6888999


Q ss_pred             EEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163           92 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA  150 (301)
Q Consensus        92 IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~  150 (301)
                      ||+++|+.  +.|+|+++|++||.+|+++|.+ +++++.+  |+.++++|++.|.++|++|+
T Consensus        82 icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          82 ICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            99999982  2499999999999999999964 4455555  67888999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.3e-32  Score=230.30  Aligned_cols=138  Identities=25%  Similarity=0.519  Sum_probs=125.8

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      .....|||++|+..|.....+||++.|.++|++.|.++|.||.+|+|||-.|++.+.||.+||++||+|+|+||++  ||
T Consensus        27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV  106 (175)
T KOG0421|consen   27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV  106 (175)
T ss_pred             CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999987  67


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHH
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA  150 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~  150 (301)
                      +..|.|||+||+   +.|+..|.+++||.+||+||-+ |-..++|  |++++. |.++|.+.+.+.-
T Consensus       107 D~~GnIcLDILk---dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y  169 (175)
T KOG0421|consen  107 DLSGNICLDILK---DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALY  169 (175)
T ss_pred             cccccchHHHHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHh
Confidence            888999999998   9999999999999999999954 4456787  468884 9999998876554

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.98  E-value=1.6e-31  Score=226.98  Aligned_cols=139  Identities=34%  Similarity=0.707  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT   90 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G   90 (301)
                      +||++|+++|++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++  ||+.+|
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            5999999999999999999998875 9999999999999999999999999999999999999999999865  688999


Q ss_pred             cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                      .||+++|.  +++|+|.+++++||.+|+++|.+ +++++.+  |+.++.++++.|+++++++++||+
T Consensus        81 ~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       81 EICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999996  26899999999999999999965 5566655  678889999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.9e-29  Score=206.67  Aligned_cols=142  Identities=25%  Similarity=0.488  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEE-ecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a-~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      +.+||+||+.+|+++....+.- .-.+.|++.|++.|. |.+-||..|.|+++|.||.+|||+||++.|.|.+|  ||+.
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe   81 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE   81 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence            7899999999999998775533 334679999999999 89999999999999999999999999999999877  6788


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchhh--hHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~A--~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      .|.||+.|+.  .++|+|.+.+.+||.+|..++.+ +|..++.+  +..|.+|+..|.++|.+|++||+.+
T Consensus        82 ~gqvClPiis--~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~  150 (153)
T KOG0422|consen   82 KGQVCLPIIS--AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK  150 (153)
T ss_pred             CCceeeeeee--cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence            8999999998  48999999999999999999965 67778764  6788899999999999999999865

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1e-27  Score=206.36  Aligned_cols=150  Identities=27%  Similarity=0.496  Sum_probs=137.9

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      |+ ...|.-.-.+|.|.+|++.|...||.||.+.+.++|+....+.|.||.||||++|+|++.+.+..|||.+||+-.|+
T Consensus         1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl   79 (223)
T KOG0423|consen    1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL   79 (223)
T ss_pred             CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence            66 56788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           81 TPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        81 TPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |+++  ||..+|.||.+.|+   .+|+|.++|++||..|.|||.+ ||+.++|  |-.++.+++++|.+.+|        
T Consensus        80 TKIFHPNVaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rAR--------  148 (223)
T KOG0423|consen   80 TKIFHPNVAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRAR--------  148 (223)
T ss_pred             eeeccCCcccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHH--------
Confidence            9887  57789999999998   8999999999999999999986 9998887  44666799999998886        


Q ss_pred             hhHHHHHHHHHH
Q 022163          156 PERQKLIDEIHE  167 (301)
Q Consensus       156 ~~r~~l~~~~~~  167 (301)
                           ++++||+
T Consensus       149 -----l~TeIHa  155 (223)
T KOG0423|consen  149 -----LYTEIHA  155 (223)
T ss_pred             -----HHHHhhc
Confidence                 7778886

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9e-28  Score=206.31  Aligned_cols=141  Identities=23%  Similarity=0.512  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCce--ec-C
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGR--FE-T   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~n--v~-~   88 (301)
                      .-|||..|+..|....   ..+....+++.+++|.++||.+||||||+|+++|.+|++|||+.|+|.|+|+++|  |+ .
T Consensus         4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~   80 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA   80 (189)
T ss_pred             cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence            5689999999998754   4566678889999999999999999999999999999999999999999998774  33 2


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC--CCCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMP--TNPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  158 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~--~nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~r  158 (301)
                      .|.|||+.++   ..|+|.+.+..|+..+.-.|.  .||.|++|  |+.++.++++.|++++|++++|||.+..
T Consensus        81 SGsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~  151 (189)
T KOG0416|consen   81 SGSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA  151 (189)
T ss_pred             cCccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence            5999999998   899999999999988765554  48888988  6778889999999999999999998874

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-25  Score=185.15  Aligned_cols=115  Identities=25%  Similarity=0.599  Sum_probs=108.2

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         5 ~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      +.-|+..|.+||+||+.+||.+||.|+... ..+|+..|.+.+.|.+||.|+|..|.+.+.||+.||+..|.|.|..|.+
T Consensus         9 rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P   87 (161)
T KOG0427|consen    9 RKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP   87 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence            556778899999999999999999999776 7799999999999999999999999999999999999999999999754


Q ss_pred             ---eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC
Q 022163           85 ---RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  123 (301)
Q Consensus        85 ---nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~  123 (301)
                         |||+||.|||+||.   +.|+|++++.+|.++|.++|.+
T Consensus        88 ~HPHiYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   88 LHPHIYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS  126 (161)
T ss_pred             CCCceecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence               89999999999998   9999999999999999999964

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.1e-25  Score=192.08  Aligned_cols=141  Identities=21%  Similarity=0.429  Sum_probs=120.2

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEE-ecC-CCCcc--EEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMS-LPL-EENIF--EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN   83 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a-~p~-~dnl~--~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn   83 (301)
                      -.+.+.-||++|+.++.--  +++.. .+. .+++.  +++++|. |..+.|+||.|+|.+.+|+.||++||+|+++|.+
T Consensus        25 ~~s~a~lrl~~di~elnLp--~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV  101 (184)
T KOG0420|consen   25 KVSAALLRLKKDILELNLP--PTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV  101 (184)
T ss_pred             cccHHHHHHHhhhhhccCC--CccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence            3446788888888887653  33332 222 33333  5999999 9999999999999999999999999999999987


Q ss_pred             c--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           84 G--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        84 ~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                      +  ||+.+|.|||+||+   ++|+|..+|.+|+.+|+.||.+ +|+|++|  |++++.+|++.|+.++|+....|+
T Consensus       102 ~HPNId~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~  174 (184)
T KOG0420|consen  102 YHPNIDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC  174 (184)
T ss_pred             ccCCcCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence            6  68899999999999   8899999999999999999977 8999998  788999999999999999887665

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.5e-16  Score=161.44  Aligned_cols=114  Identities=25%  Similarity=0.432  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC----CceecC
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP----NGRFET   88 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP----n~nv~~   88 (301)
                      .+..+.|++-|..+-+.||+++..++.+.-..+.|.||.+|||.+|.|.|.|.||++||..||.|.+.+-    |+|.|.
T Consensus       853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~  932 (1101)
T KOG0895|consen  853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE  932 (1101)
T ss_pred             HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence            3445567777778889999999999988888999999999999999999999999999999999999883    446889


Q ss_pred             CCcEEeccCCCC----CCCCCccccHHHHHHHHHHhCC-CCCC
Q 022163           89 QTKICLSISNHH----PEHWQPSWSVRTALVALIAFMP-TNPN  126 (301)
Q Consensus        89 ~G~IClsiL~~~----~e~WsP~~tI~~IL~~I~~lL~-~nP~  126 (301)
                      +|+||+++|++|    .+-|+|+.++.+||++||.|+. +.|+
T Consensus       933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py  975 (1101)
T KOG0895|consen  933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPY  975 (1101)
T ss_pred             ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccc
Confidence            999999999986    3789999999999999999975 4664

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.4e-14  Score=129.61  Aligned_cols=136  Identities=18%  Similarity=0.250  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCC--CCCCeeEEecCCce--ecC-
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP--FKPPSFMLLTPNGR--FET-   88 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP--~~PP~V~FlTPn~n--v~~-   88 (301)
                      --|+.||..+.+.+.+||++.|+..|-+.|+++|++ ..+.|.||+|+|+|.+|++||  ..-|+|.|.++.+|  |.+ 
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~  100 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK  100 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence            457788888888999999999999999999999995 667999999999999999999  46899999998654  333 


Q ss_pred             CCcEEeccCCCCCCCCC-ccccHHHHHHHHHHhCCCCCCCc------hhhhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           89 QTKICLSISNHHPEHWQ-PSWSVRTALVALIAFMPTNPNGA------LGSLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        89 ~G~IClsiL~~~~e~Ws-P~~tI~~IL~~I~~lL~~nP~~~------l~A~~~~~edr~~f~~kare~~~kya  154 (301)
                      ++.+|++-.-  ++ |. -...|.+||..|+..|. +|++.      -+|+.+|++++++|.++++++++...
T Consensus       101 skeLdl~raf--~e-WRk~ehhiwqvL~ylqriF~-dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr  169 (258)
T KOG0429|consen  101 SKELDLNRAF--PE-WRKEEHHIWQVLVYLQRIFY-DPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR  169 (258)
T ss_pred             ccceeHhhhh--hh-hhccccHHHHHHHHHHHHhc-CcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5778876432  34 84 47789999999999994 44432      23788999999999999999986443

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.7e-14  Score=151.71  Aligned_cols=116  Identities=26%  Similarity=0.448  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC-----Cce
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP-----NGR   85 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP-----n~n   85 (301)
                      .-.+|+++|++.|.++.+.|+.+.|.+..+...+++|.||.+|||++|+|.|.|.||..||..||.|.++|-     |+|
T Consensus       282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN  361 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN  361 (1101)
T ss_pred             hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999994     556


Q ss_pred             ecCCCcEEeccCCCCC----CCCCcc-ccHHHHHHHHHHhCCCC-CC
Q 022163           86 FETQTKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN-PN  126 (301)
Q Consensus        86 v~~~G~IClsiL~~~~----e~WsP~-~tI~~IL~~I~~lL~~n-P~  126 (301)
                      .|.+|+||+++|..+-    +.|+|. .+|.++|..|+.++..+ |.
T Consensus       362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py  408 (1101)
T KOG0895|consen  362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPY  408 (1101)
T ss_pred             cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcc
Confidence            7889999999998763    579998 89999999999999654 54

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4.8e-10  Score=93.82  Aligned_cols=106  Identities=27%  Similarity=0.431  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCC--CC--ccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-e-
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLE--EN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-R-   85 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~--dn--l~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-n-   85 (301)
                      ..-||.+|+.+=++--.++-...-.+  +|  +..|...|.||+.|+||+.+|.++|.+..+||..||.|+|.|.+- + 
T Consensus         6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g   85 (138)
T KOG0896|consen    6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG   85 (138)
T ss_pred             cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence            34578888887766554554333332  33  568999999999999999999999999999999999999999642 1 


Q ss_pred             e-cCCCcEE---eccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           86 F-ETQTKIC---LSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        86 v-~~~G~IC---lsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      + ..+|.|-   +..|    .+|+-.++++.+|..++-.|
T Consensus        86 vn~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m  121 (138)
T KOG0896|consen   86 VNSSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM  121 (138)
T ss_pred             cccCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence            1 2344442   2334    68999999999999998665

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.8e-06  Score=70.60  Aligned_cols=61  Identities=16%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             EEEEEEcCCCCCCCCCeeEEecCCc---eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC
Q 022163           60 YHGRIQLPAEYPFKPPSFMLLTPNG---RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  122 (301)
Q Consensus        60 F~~~I~fP~dYP~~PP~V~FlTPn~---nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~  122 (301)
                      .-+.+.|++|||+.||.+|...|..   -+-.+|.||+.+|.  +++|+.+++|+.++++|...+-
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlV   76 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLV   76 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhh
Confidence            3467889999999999999999974   45668999999998  5899999999999999999884

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.06  E-value=1.4e-05  Score=67.32  Aligned_cols=70  Identities=24%  Similarity=0.524  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEcCCCCCCCCCeeEEecCC-----ceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCC
Q 022163           56 EGGIYHGRIQLPAEYPFKPPSFMLLTPN-----GRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP  125 (301)
Q Consensus        56 eGG~F~~~I~fP~dYP~~PP~V~FlTPn-----~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP  125 (301)
                      .|+.|.+.|.||++||..||.|....|.     .|++.+|.+|+---....+.|.|.-.+.++|.....+|.+.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~~  108 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDGL  108 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999888753     389999999993112224899999999999999999995443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.85  E-value=1.8e-05  Score=65.93  Aligned_cols=79  Identities=23%  Similarity=0.473  Sum_probs=54.3

Q ss_pred             CccEEEEEEeCCCCCCCCCCeE--EEEEEcCCCCCCCCCeeEEec-C------CceecCCCcEEeccCCCCCCCCCc-cc
Q 022163           39 NIFEWQFAIRGPGDTEFEGGIY--HGRIQLPAEYPFKPPSFMLLT-P------NGRFETQTKICLSISNHHPEHWQP-SW  108 (301)
Q Consensus        39 nl~~W~v~I~GP~~TpYeGG~F--~~~I~fP~dYP~~PP~V~FlT-P------n~nv~~~G~IClsiL~~~~e~WsP-~~  108 (301)
                      .+....++|.    -.|+|..|  .+.|.+|.+||..||.+.... +      +-+++.+|+|++..|    +.|++ ..
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL----~~W~~~~s  102 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL----QNWNPPSS  102 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH----HT--TTTS
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh----ccCCCCCC
Confidence            4445555554    35888888  467889999999999996653 1      227899999999999    47987 88


Q ss_pred             cHHHHHHHHHHhCCCCC
Q 022163          109 SVRTALVALIAFMPTNP  125 (301)
Q Consensus       109 tI~~IL~~I~~lL~~nP  125 (301)
                      ++.+++..+...|.++|
T Consensus       103 ~L~~lv~~l~~~F~~~p  119 (121)
T PF05743_consen  103 NLVDLVQELQAVFSEEP  119 (121)
T ss_dssp             -HHHHHHHHHHCCCHS-
T ss_pred             CHHHHHHHHHHHHhHcC
Confidence            99999999998885543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.27  E-value=0.00017  Score=61.41  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHhh-------CCCCCeEEecCCCCccEEEEEEeCCCCCCCCC--CeEEEEEEcCCCCCCCCCeeEEe
Q 022163           10 NPAVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~-------~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      ..-..||..||..|-+       +....|.+..+ .+=+.|.+..-=    .|+-  ..|.+.+.+|..||..||.+..-
T Consensus        23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn-~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lP   97 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLESN-KEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALP   97 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecc
Confidence            3457899999999854       22233433322 222344322110    0111  34667888999999999999875


Q ss_pred             c---CCceecCCCcEEeccCCCCCCCC---CccccHHHHH
Q 022163           81 T---PNGRFETQTKICLSISNHHPEHW---QPSWSVRTAL  114 (301)
Q Consensus        81 T---Pn~nv~~~G~IClsiL~~~~e~W---sP~~tI~~IL  114 (301)
                      .   +.-..|..|+||++.=  ..--|   .|.++|.+.|
T Consensus        98 eLdGKTaKMYRGGkIClt~H--FkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   98 ELDGKTAKMYRGGKICLTDH--FKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             GGTTT-SSBCCCCBB---TT--HHHHHHCTTTT--HHHHH
T ss_pred             ccCCchhhhhcCceEeeecc--cchhhhhcCCchhHHHHH
Confidence            4   2224688999999742  11123   3455666554

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0028  Score=61.00  Aligned_cols=110  Identities=19%  Similarity=0.327  Sum_probs=73.0

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCC-eEEecC--CCCccEEEEEEeCCCCCCCCCCeEE--EEEEcCCCCCCCCCeeEEecC
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDD-FMSLPL--EENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~g-i~a~p~--~dnl~~W~v~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      -...+.+.+...+.......+.. -+...+  ..+++...++|.    .+|.|-.|-  +.|.+.+.||+.||.+.....
T Consensus        17 ~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT   92 (365)
T KOG2391|consen   17 YKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPT   92 (365)
T ss_pred             chhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCC
Confidence            33345555555555555443332 223333  235666666664    567787765  677899999999998854431


Q ss_pred             C-------ceecCCCcEEeccCCCCCCCCCc-cccHHHHHHHHHHhCCCCC
Q 022163           83 N-------GRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP  125 (301)
Q Consensus        83 n-------~nv~~~G~IClsiL~~~~e~WsP-~~tI~~IL~~I~~lL~~nP  125 (301)
                      +       -||+.+|+|.|..|.    .|.+ ++.+..++..+.+.|.++|
T Consensus        93 ~~M~ik~~~hVd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen   93 STMIIKVHEHVDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSEDP  139 (365)
T ss_pred             chhhhHHhhccCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcCCC
Confidence            1       279999999999994    7965 7788888888888885533

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0037  Score=52.65  Aligned_cols=79  Identities=20%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCC----------eEEEEEEcCCCCCCCCCeeEEe
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      .=.+||..||+.|-..      +....++-..|+-.=..++||-|-|.          .|.+.+.+|-.||-..|.+..-
T Consensus        27 ~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp  100 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP  100 (167)
T ss_pred             HHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence            3478999999998641      11122233345444455777777763          4667788899999999998654


Q ss_pred             c---CCceecCCCcEEec
Q 022163           81 T---PNGRFETQTKICLS   95 (301)
Q Consensus        81 T---Pn~nv~~~G~ICls   95 (301)
                      -   +.-..|..|+|||.
T Consensus       101 eldgktakmyrggkiclt  118 (167)
T KOG3357|consen  101 ELDGKTAKMYRGGKICLT  118 (167)
T ss_pred             ccCchhhhhhcCceEeec
Confidence            3   12245788999986

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=94.86  E-value=0.091  Score=41.51  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeC--CCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      .+...|+..|+.--+..+ ......+...+.+.+.+  ...+.-....+++.|.||++||..+|.|.+.++
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            467788888887443333 22233445566777732  233444466899999999999999999986654

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.05  E-value=0.3  Score=38.28  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             CCeEEEEEEcCCCCCCCCCeeEEec
Q 022163           57 GGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus        57 GG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      .-.+.+.|.||.+||..+|.|.+.+
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEEC
Confidence            4558899999999999999998764

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=94.02  E-value=0.57  Score=39.27  Aligned_cols=91  Identities=18%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             CCeEEecCCCCccEEEEEEeC--CCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecC--------------CCcE
Q 022163           29 DDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFET--------------QTKI   92 (301)
Q Consensus        29 ~gi~a~p~~dnl~~W~v~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~--------------~G~I   92 (301)
                      .|+...-..+.-..|.+ |.|  -+.+.|....-.+.|.+|..||..+|-+.+..|-...-.              +|+.
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~   90 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT   90 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence            34445444444456765 776  345669999999999999999999998888886432111              2443


Q ss_pred             EeccCCCCCCCCCccc-cHHHHHHHHHHhC
Q 022163           93 CLSISNHHPEHWQPSW-SVRTALVALIAFM  121 (301)
Q Consensus        93 ClsiL~~~~e~WsP~~-tI~~IL~~I~~lL  121 (301)
                      ---+.++ ...|.|.. +|.+.|..|...|
T Consensus        91 wQrWSRH-~~~W~P~~D~l~T~l~~v~~~L  119 (122)
T PF14462_consen   91 WQRWSRH-NNPWRPGVDDLWTHLARVEHAL  119 (122)
T ss_pred             eeeecCC-CCCCCCCCCcHHHHHHHHHHHH
Confidence            3333332 35687743 5777777666554

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=87.35  E-value=0.61  Score=40.84  Aligned_cols=63  Identities=24%  Similarity=0.485  Sum_probs=47.7

Q ss_pred             CCeEE---EEEEcCCCCCCCCCeeEEecCC-----ceecCC-----CcEEeccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           57 GGIYH---GRIQLPAEYPFKPPSFMLLTPN-----GRFETQ-----TKICLSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        57 GG~F~---~~I~fP~dYP~~PP~V~FlTPn-----~nv~~~-----G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      +|+..   +.|.|+.+||+.+|.|.++...     .|++..     ..+|+.--..  ..|.+.+++..+|..|..-|
T Consensus        49 ~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~--~e~~~~~g~~~~l~rl~~Wl  124 (162)
T PF14457_consen   49 VGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW--SEWRPSWGPEGFLDRLFDWL  124 (162)
T ss_pred             CCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH--HHhhhccCHHHHHHHHHHHH
Confidence            35554   5689999999999988777632     355554     6799976553  57999999999999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		6e-32
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		4e-14
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		6e-14
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		6e-14
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		6e-14
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		9e-14
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-13
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-13
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-13
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-13
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-13
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		5e-13
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		5e-13
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-13
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		6e-13
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		7e-13
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		7e-13
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		7e-13
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		8e-13
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		8e-13
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		8e-13
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-12
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-12
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-12
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-12
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-12
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-12
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-12
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		3e-12
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		1e-11
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-11
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-11
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-11
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-11
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		1e-11
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-11
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-11
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-11
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-11
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		2e-11
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-11
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-11
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-11
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-11
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		3e-11
3jvz_A	146	E2~ubiquitin-Hect Length = 146		4e-11
1jas_A	152	Hsubc2b Length = 152		5e-11
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-10
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-10
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		5e-10
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		7e-10
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-09
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-09
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-09
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-09
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-09
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-09
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-09
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-09
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-09
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		7e-09
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		9e-09
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		1e-08
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		2e-08
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		2e-08
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-08
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		4e-08
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-08
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		4e-08
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		8e-08
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		7e-07
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		7e-07
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		7e-07
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-06
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-06
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		4e-06
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-05
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		1e-05
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-05
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-05
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		2e-05
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-05
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-05
1j74_A	145	Crystal Structure Of Mms2 Length = 145		2e-05
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-05
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		3e-05
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		3e-05
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		3e-05
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		3e-05
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		3e-05
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-05
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-05
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		5e-05
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		6e-05
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-04
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-04
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-04
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		2e-04
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		3e-04
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		3e-04
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-04
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		3e-04
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		3e-04
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		5e-04
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		7e-04

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           FKPPS  ++TPNGRF+  T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 75  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 133
Query: 132 LDYKKEERRALAIKS 146
           ++     +R LA++S
Sbjct: 134 IETSDFTKRQLAVQS 148

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++Q +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7   ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 67  FKPPKVAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 119

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 21/125 (16%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 10  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73  KPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVA 116
            PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L++
Sbjct: 70  SPPAFRFLTKMWHPN-IYET-GDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLS 125
Query: 117 LIAFM 121
           +I+ +
Sbjct: 126 VISLL 130

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +Q  ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 82  FKPPKVNFTTKIYHPN--INSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 21/125 (16%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+
Sbjct: 7   KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73  KPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVA 116
            PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L++
Sbjct: 67  SPPAFRFLTKMWHPN-IYET-GDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLS 122
Query: 117 LIAFM 121
           +I+ +
Sbjct: 123 VISLL 127

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 20  ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 80  FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 132

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 4   ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 64  FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 116

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8   ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ +V   L+++ + +  +PN
Sbjct: 68  FKPPKIAFTTKIYHPN--INSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YP
Sbjct: 2   ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 62  FKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLSISSLL-TDPN 114

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 80  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 132

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 7   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 67  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 119

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A++RI +E++E+Q +P  +  + P+ ++IF W   I GP D+ ++GG++   +  P +YP
Sbjct: 5   AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72  FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FK P  +FM    +        ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 65  FKAPRVTFMTKVYHPNINKNGVICLDILK---DQWSPALTLSRVLLSISSLL-TDPN 117

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 62  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 114

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 72  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 61  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 113

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 10  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 70  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 122

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 12  ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 72  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWGPALTISKVLLSICSLL-CDPN 116

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI +E+ +++ +P     + P+ ++++ WQ +I GP D+ + GG++   I  P +YPFK
Sbjct: 5   KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74  PP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGAL 129
           PP  SF     +        ICL I     + W P+ ++   L+++ + +   NP+  L
Sbjct: 65  PPKISFTTKIYHPNINANGNICLDILK---DQWSPALTLSKVLLSICSLLTDANPDDPL 120

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 29/144 (20%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 2   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66  LPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQP 106
            P +YP  PP            + P+GR      +C+SI  H P           E W P
Sbjct: 62  FPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSP 114
Query: 107 SWSVRTALVALIAFM--PTNPNGA 128
             SV   L+++++ +  P + +GA
Sbjct: 115 VQSVEKILLSVVSMLAEPNDESGA 138

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL         W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDALR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ    GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 29/144 (20%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
           ++   A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   + 
Sbjct: 3   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66  LPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQP 106
            P +YP  PP            + P+GR      +C+SI  H P           E W P
Sbjct: 63  FPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSP 115
Query: 107 SWSVRTALVALIAFM--PTNPNGA 128
             SV   L+++++ +  P + +GA
Sbjct: 116 VQSVEKILLSVVSMLAEPNDESGA 139

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71  PFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVR 111
           P  PP            + P+GR      +C+SI  H P           E W P  SV 
Sbjct: 64  PLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVE 116
Query: 112 TALVALIAFM--PTNPNGA 128
             L+++++ +  P + +GA
Sbjct: 117 KILLSVVSMLAEPNDESGA 135

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 10  ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71  PFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVR 111
           P  PP            + P+GR      +C+SI  H P           E W P  SV 
Sbjct: 70  PLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVE 122
Query: 112 TALVALIAFM--PTNPNGA 128
             L+++++ +  P + +GA
Sbjct: 123 KILLSVVSMLAEPNDESGA 141

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YP
Sbjct: 8   ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ +V   L+++ + +  +PN
Sbjct: 68  FKPPKIAFTTKIYHPN--INSNGSIKLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 5   ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +PN
Sbjct: 65  FKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 117

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 5   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 65  FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 117

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           PP    LT    PN   +   +ICL I     + W P+  +RT L+++ A +
Sbjct: 64  PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           PP    LT    PN   +   +ICL I     + W P+  +RT L+++ A +
Sbjct: 64  PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 20  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 80  FKPPKVAFTTRIYHPN--INSNGSIXLDILR---SQWSPALTISKVLLSICSLL-CDPN 132

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 8   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    LT    PN   +   +ICL +      +W P+  +RT L+++ A + + NPN  
Sbjct: 68  APKVRFLTKIYHPN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 129 LG---SLDYKKEERRALAIKSRE 148
           L    + D+ K E+ A A K+RE
Sbjct: 123 LANDVAEDWIKNEQGAKA-KARE 144

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    LT    PN   +   +ICL +      +W P+  +RT L+++ A + + NPN  
Sbjct: 66  APKVRFLTKIYHPN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 129 LG---SLDYKKEERRALAIKSRE 148
           L    + D+ K E+ A A K+RE
Sbjct: 121 LANDVAEDWIKNEQGAKA-KARE 142

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 62  FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 114

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           L + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I   
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68  AEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TN 124
            EYPFKPP  +F     +    +Q  ICL I     ++W P+ ++   L+++ + +   N
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCN 161
Query: 125 PNGAL-GSLDYKKEERRA 141
           P   L GS+  +    RA
Sbjct: 162 PADPLVGSIATQYMTNRA 179

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++  
Sbjct: 1   MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68  AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
            EYP KPP+   ++    PN        ICL I  +    W P++ V   L ++ + +  
Sbjct: 61  EEYPNKPPTVKFISKMFHPN--VYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDE 115
Query: 122 --PTNPNGALGSLDYKKEER 139
             P +P  +L +  Y++  R
Sbjct: 116 PNPNSPANSLAAQLYQENRR 135

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           ++  P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++ 
Sbjct: 3   HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67  PAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM- 121
             EYP KPP+   ++    PN        ICL I  +    W P++ V   L ++ + + 
Sbjct: 63  TEEYPNKPPTVKFISKMFHPN--VYADGSICLDILQN---RWSPTYDVAAILTSIQSLLD 117
Query: 122 ---PTNPNGALGSLDYKKEER 139
              P +P  +L +  Y++  R
Sbjct: 118 EPNPNSPANSLAAQLYQENRR 138

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +YP
Sbjct: 4   SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72  FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGA 128
           FKPP  +F     +    +Q  ICL I     ++W P+ ++   L+++ + +   NP   
Sbjct: 64  FKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 129 L-GSLDYKKEERRA 141
           L GS+  +    RA
Sbjct: 121 LVGSIATQYMTNRA 134

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 2   ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72  FKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP  +F     +    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 62  FKPPKVAFTTRIYHPAINSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 114

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG +  
Sbjct: 15  ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63  RIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI 118
            I +P +YP+ PP    +T    PN   +T   ICL +  +    W P+ ++RTAL+++ 
Sbjct: 75  AITIPNDYPYNPPKIKFVTKIWHPNISSQTGA-ICLDVLKN---EWSPALTIRTALLSIQ 130
Query: 119 AFM----PTNPNGALGSLDYKKEERRALAIKSREAAPK-FGT-PE---RQKLIDEIHEYM 169
           A +    P +P  A  +  YK  E  AL +K+     K F T P+   R+ +I +I E  
Sbjct: 131 ALLSDPQPDDPQDAEVAKMYK--ENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMG 188
Query: 170 LSK 172
            S+
Sbjct: 189 FSE 191

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 21/139 (15%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ E+  NP + F +  +++N ++ W+  I GP DT +EGG++   +  P +YP +PP 
Sbjct: 24  RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77  FMLLT----PNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM 121
              +T    PN   +    +C+SI  H P           E W P  +V T ++++I+ +
Sbjct: 84  MKFITEIWHPN--VDKNGDVCISIL-HEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140
Query: 122 PTNPNG-ALGSLDYKKEER 139
             +PNG +  ++D  KE R
Sbjct: 141 -ADPNGDSPANVDAAKEWR 158

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           ++   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P+
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 69  EYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           +YP+KPP     TP  +   +    ICL I     E+W  S+ VRT L++L + +   PN
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEPN 122
Query: 127 GA 128
            A
Sbjct: 123 NA 124

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+  +   L+++ + +  +PN
Sbjct: 61  FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALKISKVLLSICSLL-CDPN 113

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K +Q +P       P E NI +W   I GP  T FE G +   I+  
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68  AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
            EYP KPP+   L+    PN        ICL I  +    W P++ V + L ++ + +  
Sbjct: 61  EEYPNKPPTVRFLSKMFHPN--VYADGSICLDILQN---RWSPTYDVSSILTSIQSLLDE 115
Query: 122 -----PTNPNGALGSLDYKKE-ERRALAI 144
                P N   A    + K+E E+R  AI
Sbjct: 116 PNPNSPANSQAAQLYQENKREYEKRVSAI 144

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q  
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68  AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-- 121
            +YP KPP+   ++    PN        ICL I  +    W P + V   L ++ + +  
Sbjct: 61  EDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQN---QWSPIYDVAAILTSIQSLLCD 115
Query: 122 --PTNPNGALGSLDYKKEER 139
             P +P  +  +  Y + +R
Sbjct: 116 PNPNSPANSEAARMYSESKR 135

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    LT    PN   +   +I L +      +W P+  +RT L+++ A + + NPN  
Sbjct: 66  APKVRFLTKIYHPN--IDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 129 LG---SLDYKKEERRALAIKSRE 148
           L    + D+ K E+ A A K+RE
Sbjct: 121 LANDVAEDWIKNEQGAKA-KARE 142

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74  PPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 130
            P    LT   +   +   +I L +      +W P+  +RT L+++ A + + NPN  L 
Sbjct: 66  APKVRFLTKIYHPAIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 131 ---SLDYKKEERRALAIKSRE 148
              + D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 21/150 (14%)
Query: 18  QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
           +++ +M+  P D F +  +++N I++W+  + GP DT +EGG +   +  P +YP KPP 
Sbjct: 10  KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77  FMLLT----PNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM 121
              ++    PN   + +  +C+SI  H P           E W P  +V T L+++I+ M
Sbjct: 70  MKFISEIWHPN--IDKEGNVCISIL-HDPGDDKWGYERPEERWLPVHTVETILLSVIS-M 125
Query: 122 PTNPN-GALGSLDYKKEERRALAIKSREAA 150
            T+PN  +  ++D  K +R   A   ++ A
Sbjct: 126 LTDPNFESPANVDAAKMQRENYAEFKKKVA 155

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
           +  PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++  
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68  AEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 123
            EYP KPP    L+    PN       +ICL I  +    W P++ V + L ++ +    
Sbjct: 61  EEYPNKPPHVKFLSEMFHPN--VYANGEICLDILQN---RWTPTYDVASILTSIQSLF-N 114
Query: 124 NPNGA 128
           +PN A
Sbjct: 115 DPNPA 119

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 11  RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    +T    PN   +   +ICL I     + W P+  +RT L+++ A +   NP+  
Sbjct: 71  APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 125
Query: 129 LGS 131
           L +
Sbjct: 126 LAN 128

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 8   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    +T    PN   +   +ICL I     + W P+  +RT L+++ A +   NP+  
Sbjct: 68  APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 122
Query: 129 LGS 131
           L +
Sbjct: 123 LAN 125

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 6   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    +T    PN   +   +ICL I     + W P+  +RT L+++ A +   NP+  
Sbjct: 66  APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 129 LGS 131
           L +
Sbjct: 121 LAN 123

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 4   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74  PPS--FMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 130
            P   FM    +   +   +ICL I     + W P+  +RT L+++ A +   NP+  L 
Sbjct: 64  APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 131 S 131
           +
Sbjct: 121 N 121

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 9   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 128
            P    +T    PN   +   +ICL I     + W P+  +RT L+++ A +   NP+  
Sbjct: 69  APKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDP 123
Query: 129 LGS 131
           L +
Sbjct: 124 LAN 126

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 5   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----P 122
           PFKPP     T    PN   + + ++CL + +   E+W+P+      + +LIA +    P
Sbjct: 64  PFKPPKITFKTKIYHPN--IDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQP 119
Query: 123 TNPNGALGSLDYKKEERRALAIKSREAAPKFG 154
            +P  A  + +Y K +R+     + E   K+G
Sbjct: 120 EHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ ++E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----P 122
           PFKPP     T    PN   + + ++CL + +   E+W+P+      + +LIA +    P
Sbjct: 62  PFKPPKITFKTKIYHPN--IDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQP 117
Query: 123 TNPNGALGSLDYKKEERRALAIKSREAAPKFG 154
            +P  A  + +Y K +R+     + E   K+G
Sbjct: 118 EHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P +Y
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71  PFKPPSFM----LLTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALV 115
           P  PP       +L PN       ++C+SI  H P           E W P  SV   L+
Sbjct: 65  PLSPPKLTFTPSILHPN--IYPNGEVCISIL-HSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 116 ALIAFMPTNPNGALGS 131
           ++++ + + PN   G+
Sbjct: 122 SVMSML-SEPNIESGA 136

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 6   YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
           +++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y  
Sbjct: 52  FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63  RIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALI 118
            I++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L 
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQ 167
Query: 119 AFM----PTNPNGALGSLDYKK 136
           A +    P +P  A+ +  YK+
Sbjct: 168 ALLAAAEPDDPQDAVVANQYKQ 189

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69  EYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
            YP+  P+   LTP  +   +TQ  I L I     E W   + VRT L+++ + +
Sbjct: 88  GYPYNAPTVKFLTPCYHPNVDTQGNISLDILK---EKWSALYDVRTILLSIQSLL 139

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 39  NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICL 94
           +I  W+  I GP  T +EGG +   I +P +YP+ PP    +T    PN   +T   ICL
Sbjct: 73  DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA-ICL 131
Query: 95  SISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 128
            I  H    W P+ ++RTAL+++ A +    PT+P  A
Sbjct: 132 DILKH---EWSPALTIRTALLSIQAMLADPVPTDPQDA 166

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73  KPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 124
           KPP     T    PN    T   ICL I  +    W P  ++++AL++L A +    P +
Sbjct: 64  KPPKMQFDTKVYHPNISSVTGA-ICLDILKN---AWSPVITLKSALISLQALLQSPEPND 119
Query: 125 PNGALGSLDYKKE 137
           P  A  +  Y ++
Sbjct: 120 PQDAEVAQHYLRD 132

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 14  KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EYPF
Sbjct: 5   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73  KPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 124
           KPP     T    PN    T   ICL I  +    W P  ++++AL++L A +    P +
Sbjct: 65  KPPKMQFDTKVYHPNISSVTGA-ICLDILRN---AWSPVITLKSALISLQALLQSPEPND 120
Query: 125 PNGA 128
           P  A
Sbjct: 121 PQDA 124

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 5   RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
           R ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y 
Sbjct: 15  RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62  GRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             I++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L
Sbjct: 75  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSL 130
Query: 118 IAFM----PTNPNGALGSLDYKK 136
            A +    P +P  A+ +  YK+
Sbjct: 131 QALLAAAEPDDPQDAVVANQYKQ 153

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 7   NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
           ++ N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   
Sbjct: 2   SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64  IQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA 119
           I++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L A
Sbjct: 62  IKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQA 117
Query: 120 FM----PTNPNGALGSLDYKK 136
            +    P +P  A+ +  YK+
Sbjct: 118 LLAAAEPDDPQDAVVANQYKQ 138

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 8   LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65  QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L A 
Sbjct: 65  KIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQAL 120
Query: 121 M----PTNPNGALGSLDYKK 136
           +    P +P  A+ +  YK+
Sbjct: 121 LAAAEPDDPQDAVVANQYKQ 140

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 8   LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           + N AV+RI +E KE+      S + + + L +EN  E +  I GP DT +EGG Y   I
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65  QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L A 
Sbjct: 62  KIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQAL 117
Query: 121 M----PTNPNGALGSLDYKK 136
           +    P +P  A+ +  YK+
Sbjct: 118 LAAAEPDDPQDAVVANQYKQ 137

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3   MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61  HGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
             ++ L  ++P  PP    LT    PN       +IC+++       W     +R  L+ 
Sbjct: 63  RMKLLLGKDFPASPPKGYFLTKIFHPN--VGANGEICVNVLK---RDWTAELGIRHVLLT 117
Query: 117 LIAFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH 166
           +   +   NP  AL      +E  R L     E A       R +L+ EIH
Sbjct: 118 IKCLLIHPNPESAL-----NEEAGRLLLENYEEYA------ARARLLTEIH 157

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
           E   +   I++P+ YP  PP  SFM   +L  N +  T  +ICL+I    PE W P W +
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
              + A+
Sbjct: 120 LHCVHAV 126

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
           E   +   I++P+ YP  PP  SFM   +L  N +  T  +ICL+I    PE W P W +
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
              + A+
Sbjct: 120 LHCVHAV 126

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 8   LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
           + +  + RI++E K  +++  SDD ++ P            E ++ +W+  I GP DT +
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56  EGGIYHGRIQLPAEYPFKPP--SFM---LLTPNGRFETQTKICLSISNHHPEHWQPSWSV 110
           E   +   I++P+ YP  PP  SFM   +L  N +  T  +ICL+I    PE W P W +
Sbjct: 63  ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT-GEICLNILK--PEEWTPVWDL 119
Query: 111 RTALVAL 117
              + A+
Sbjct: 120 LHCVHAV 126

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YPF+P
Sbjct: 8   RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 75  PSFMLLTP--NGRFETQTKICLSISNHHPE-HWQPSWSVRTALVALIAFMPT-NPNGAL 129
           P    LTP  +   ++  +ICL +    P+  W+PS ++ T L ++   M   NP+  L
Sbjct: 68  PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 42  EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS--FM--LLTPNGRFETQTKICLSIS 97
           ++     GP  T +EGGI+   + LP +YPF  PS  FM  LL PN   E    +CL + 
Sbjct: 30  DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD-EASGSVCLDVI 88
Query: 98  NHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           N   + W P +S+       +  + T PN
Sbjct: 89  N---QTWTPLYSLVNVFEVFLPQLLTYPN 114

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +  P E
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70  YPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 127
           YP +PP      P  +        +CLSI N   E W+P+ +++  L+ +   +  +PN 
Sbjct: 74  YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE-EGWKPAITIKQILLGIQDLL-DDPNI 131
Query: 128 A---------LGSLDYKKEERRALAIKSREAAP 151
           A         +   D  + E+R  A ++RE AP
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVRA-QARENAP 163

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
           N+   A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++ 
Sbjct: 2   NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62  GRIQLPAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
            R+    +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 118

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
            ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   ++ 
Sbjct: 7   CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 66
Query: 67  PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           P EYP KPP      P G +         ICLSI N   + W+P+ +++  ++ +   + 
Sbjct: 67  PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLD 123
Query: 123 T-NPN 126
           + NPN
Sbjct: 124 SPNPN 128

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
            ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   ++ 
Sbjct: 5   CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64
Query: 67  PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           P EYP KPP      P G +         ICLSI N   + W+P+ +++  ++ +   + 
Sbjct: 65  PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLD 121
Query: 123 T-NPN 126
           + NPN
Sbjct: 122 SPNPN 126

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 10  ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 70  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 121

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPN--VAPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 7   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 67  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 118

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 6   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 66  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 117

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 7   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64  IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++   +YP  PPS   +T    NG     + +  + S      WQ S+S++  L  L   
Sbjct: 67  VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 125
Query: 121 MPTNPNGAL 129
           M +  N  L
Sbjct: 126 MMSKENMKL 134

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 12  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64  IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++   +YP  PPS   +T    NG     + +  + S      WQ S+S++  L  L   
Sbjct: 72  VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 130
Query: 121 MPTNPNGAL 129
           M +  N  L
Sbjct: 131 MMSKENMKL 139

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 116

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 2   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 64  IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++   +YP  PPS   +T    NG     + +  + S      WQ S+S++  L  L   
Sbjct: 62  VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 120
Query: 121 MPTNPNGAL 129
           M +  N  L
Sbjct: 121 MMSKENMKL 129

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 8   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67  PAEYPFKPPSFMLLTPNGRFETQT----KICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP      P   F  Q      +CLSI     + W+P+ +++  L+ +
Sbjct: 68  KDDYPSSPPKCKFEPP--LFHPQVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 1   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 64  IQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           ++   +YP  PPS   +T    NG     + +  + S      WQ S+S++  L  L   
Sbjct: 61  VECGPKYPEAPPSVRFVTKINMNG-INNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRL 119
Query: 121 MPTNPNGAL 129
           M +  N  L
Sbjct: 120 MMSKENMKL 128

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 2   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
           PFKPP     T    PN   +   +ICL I +   E+W+P       L AL
Sbjct: 61  PFKPPMIKFTTKIYHPN--VDENGQICLPIISS--ENWKPCTKTCQVLEAL 107

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
           PFKPP     T    PN   +   +ICL I +   E+W+P       L AL
Sbjct: 64  PFKPPMIKFTTKIYHPN--VDENGQICLPIISS--ENWKPCTKTCQVLEAL 110

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 42  EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS--FM--LLTPNGRFETQTKICLSIS 97
           E+     GP  T +EGG++  R+ LP +YPFK PS  FM  +  PN   E    +CL + 
Sbjct: 52  EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID-EASGTVCLDVI 110
Query: 98  NHHPEHWQPSWSV----RTALVALIAF-MPTNP-NGALGSLDYKKEERRALAIKSREAAP 151
           N   + W   + +     + L  L+A+  P +P NG   ++   + E     IK  E   
Sbjct: 111 N---QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK--EYIQ 165
Query: 152 KFGTPERQK 160
           K+ T E  K
Sbjct: 166 KYATEEALK 174

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 38  ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF----MLLTPNGRFETQTKIC 93
           + + E+    +GP  T +E G +   +QLP++YPFK PS      +L PN   E    +C
Sbjct: 35  DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD-ERSGSVC 93
Query: 94  LSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           L + N   + W P + +       +  +   PN
Sbjct: 94  LDVIN---QTWTPMYQLENIFDVFLPQLLRYPN 123

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 3   EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
           + +YNL N A  RI +E+     NP  +        NI  W     G  +T +   +Y  
Sbjct: 13  KTKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 63  RIQLPAEYPFKPPSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA 119
           +I  P  YP KPP    L     +    +   ICLS+     + + PS S+   ++++I+
Sbjct: 72  KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIIS 128
Query: 120 FM 121
            +
Sbjct: 129 ML 130

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +YN+ N A  RI +E+    +NP  +        NI  W     G  +T +   +Y  +I
Sbjct: 1   KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 65  QLPAEYPFKPPSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
             P +YP KPP    L     +    +   ICLS+     + + PS S+   ++++I+ +
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 18  QEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF 77
           ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I   +EY + PP  
Sbjct: 30  RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 78  MLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
             +T    PN    T  + C+   + +PE W  ++++ + L+AL   M +NP
Sbjct: 90  KFITIPFHPNVDPHT-GQPCIDFLD-NPEKWNTNYTLSSILLAL-QVMLSNP 138

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 32  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 64  IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
           I+   +YP  PP    +T          NG  + +    L+        WQ S+S++  L
Sbjct: 92  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 144
Query: 115 VALIAFMPTNPNGAL 129
             L   M +  N  L
Sbjct: 145 QELRRLMMSKENMKL 159

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 4   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLK 63
Query: 64  IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
           I+   +YP  PP    +T          NG  + +    L+        WQ S+S++  L
Sbjct: 64  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 116
Query: 115 VALIAFMPTNPNGAL 129
             L   M +  N  L
Sbjct: 117 QELRRLMMSKENMKL 131

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 14  KRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           KR+ +E+  +Q++P    M+L    ++ +I +W   + G   T +EG  +    +  + Y
Sbjct: 25  KRLQKELLALQNDPPPG-MTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 71  PFKPPSFMLLTPNG----RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           PF  P  M    N        +   ICLSI     E W P+ SV++  +++I+ +
Sbjct: 84  PFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 8   LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
           +K P   R+L+E++E Q    D  +S  LE++    +  W   I GP  T +E  IY  +
Sbjct: 22  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 64  IQLPAEYPFKPPSFMLLT---------PNGRFETQTKICLSISNHHPEHWQPSWSVRTAL 114
           I+   +YP  PP    +T          NG  + +    L+        WQ S+S++  L
Sbjct: 82  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-------KWQNSYSIKVVL 134
Query: 115 VALIAFMPTNPNGAL 129
             L   M +  N  L
Sbjct: 135 QELRRLMMSKENMKL 149

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        + LSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVSLSILEED-KDWRPAITIKQILLGI 116

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 5   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67  PAEYPFKPPSFM----LLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             +YP  PP       L  PN        + LSI     + W+P+ +++  L+ +
Sbjct: 65  KDDYPSSPPKCKFEPPLFHPN--VYPSGTVXLSILEED-KDWRPAITIKQILLGI 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	4e-61
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	9e-29
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-28
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-28
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	5e-28
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-27
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-27
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	2e-27
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-27
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	4e-27
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	8e-27
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-26
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-26
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-26
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-26
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-26
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-26
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	5e-26
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	5e-26
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	6e-26
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	6e-26
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	6e-26
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	9e-26
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-25
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-25
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-25
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-25
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-25
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-25
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-25
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-25
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-25
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-25
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	4e-25
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	6e-25
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	7e-25
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-24
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	1e-24
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	2e-24
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-24
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	3e-24
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	4e-24
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	5e-24
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	1e-22
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	7e-22
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-21
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	6e-21
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-20
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	9e-20
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	3e-18

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  191 bits (487), Expect = 4e-61
 Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 1/143 (0%)

Query: 6   YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
                 A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++ 
Sbjct: 9   KRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLI 68

Query: 66  LPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
            P E+PFKPPS  ++TPNGRF+  T++CLSI++ HP+ W P+WSV T L  L++FM    
Sbjct: 69  FPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE-K 127

Query: 126 NGALGSLDYKKEERRALAIKSRE 148
              LGS++     +R LA++S  
Sbjct: 128 GPTLGSIETSDFTKRQLAVQSLA 150

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  106 bits (268), Expect = 9e-29
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           +   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P++
Sbjct: 8   HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YP+KPP     T    PN   +    ICL I     E+W  S+ VRT L++L + +   P
Sbjct: 68  YPYKPPVVKFTTPCWHPN--VDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEP 121

Query: 126 N 126
           N
Sbjct: 122 N 122

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  107 bits (268), Expect = 1e-28
 Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           R ++   A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I
Sbjct: 17  RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76

Query: 65  QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
              +EY + PP    +T    PN    T    C+     +PE W  ++++ + L+AL   
Sbjct: 77  HFTSEYNYAPPVVKFITIPFHPNVDPHTGQ-PCIDFL-DNPEKWNTNYTLSSILLALQVM 134

Query: 121 MPTNPN 126
           + +NP 
Sbjct: 135 L-SNPV 139

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  104 bits (262), Expect = 3e-28
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 20/131 (15%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +YN+   A  RI +E+    +NP  +        NI  W     G  +T +   +Y  +I
Sbjct: 1   KYNM-GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59

Query: 65  QLPAEYPFKPPSFMLLTP---------NGRFETQTKICLSISNHHPEHWQPSWSVRTALV 115
             P +YP KPP    L           NG       ICLS+     + + PS S+   ++
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGD------ICLSLLG---DDYNPSLSISGLVL 110

Query: 116 ALIAFMPTNPN 126
           ++I+ + ++  
Sbjct: 111 SIISML-SSAK 120

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  105 bits (265), Expect = 5e-28
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           + P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+
Sbjct: 28  RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87

Query: 69  EYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTN 124
            YP+  P+   LT    PN   +TQ  I L I     E W   + VRT L+++ + +   
Sbjct: 88  GYPYNAPTVKFLTPCYHPN--VDTQGNISLDILK---EKWSALYDVRTILLSIQSLL-GE 141

Query: 125 PN 126
           PN
Sbjct: 142 PN 143

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  103 bits (258), Expect = 2e-27
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A  RI +E+     NP  +        NI  W     G  +T +   +Y  +I  P  
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78

Query: 70  YPFKPPSFMLLTP---------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
           YP KPP    L           NG       ICLS+     + + PS S+   ++++I+ 
Sbjct: 79  YPLKPPIVYFLQKPPKHTHVYSNGD------ICLSVLG---DDYNPSLSISGLILSIISM 129

Query: 121 MPTNPN 126
           + ++  
Sbjct: 130 L-SSAK 134

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  103 bits (259), Expect = 2e-27
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 10/121 (8%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +
Sbjct: 3   HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTD 62

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +P
Sbjct: 63  YPFKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDP 116

Query: 126 N 126
           N
Sbjct: 117 N 117

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  103 bits (258), Expect = 2e-27
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA KR++++ K +Q +P       P + NI  W   I GP DT ++GG +   +Q   +Y
Sbjct: 4   PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           P KPP+   ++    PN        ICL I       W P + V   L ++ + +  +PN
Sbjct: 64  PNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLL-CDPN 117

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  102 bits (257), Expect = 2e-27
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 4   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 63

Query: 65  QLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
                YP  PP    ++    P     T  ++      H    W+ ++++ T L+ L   
Sbjct: 64  DCGPNYPDSPPKVTFISKINLPCVNPTT-GEVQTDF--HTLRDWKRAYTMETLLLDLRKE 120

Query: 121 MPTNPN 126
           M   P 
Sbjct: 121 M-ATPA 125

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  102 bits (257), Expect = 4e-27
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
           M  +  NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++
Sbjct: 3   MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62

Query: 61  HGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
             ++ L  ++P  PP    LT    PN       +IC+++       W     +R  L+ 
Sbjct: 63  RMKLLLGKDFPASPPKGYFLTKIFHPN--VGANGEICVNVLK---RDWTAELGIRHVLLT 117

Query: 117 LIAFMPTNPN 126
           +   +  +PN
Sbjct: 118 IKCLL-IHPN 126

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  102 bits (255), Expect = 8e-27
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 18/124 (14%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 4   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63

Query: 71  PFKPPSFMLLTP--------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           P KPP    L+         NG       ICL I       W P++ V + L ++ +   
Sbjct: 64  PNKPPHVKFLSEMFHPNVYANGE------ICLDILQ---NRWTPTYDVASILTSIQSLF- 113

Query: 123 TNPN 126
            +PN
Sbjct: 114 NDPN 117

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  101 bits (254), Expect = 1e-26
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 10/121 (8%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +
Sbjct: 18  SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 77

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YPFKPP     T    PN    +   ICL I       W P+ ++   L+++ + +  +P
Sbjct: 78  YPFKPPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDP 131

Query: 126 N 126
           N
Sbjct: 132 N 132

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  102 bits (256), Expect = 2e-26
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 9/129 (6%)

Query: 2   AEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYH 61
            E+ Y   +  + R+ +E+K++++    +  +   + N FEW   I+GP  T +EGG + 
Sbjct: 14  RENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFT 73

Query: 62  GRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
             I +P +YP+ PP    +T    PN   +T   ICL +       W P+ ++RTAL+++
Sbjct: 74  LAITIPNDYPYNPPKIKFVTKIWHPNISSQTG-AICLDVLK---NEWSPALTIRTALLSI 129

Query: 118 IAFMPTNPN 126
            A + ++P 
Sbjct: 130 QALL-SDPQ 137

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  100 bits (252), Expect = 2e-26
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 10/120 (8%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EY
Sbjct: 5   GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           P   P    +T    PN   +   +ICL I     + W P+  +RT L+++ A + + PN
Sbjct: 65  PMAAPKVRFMTKIYHPN--VDKLGRICLDILK---DKWSPALQIRTVLLSIQALL-SAPN 118

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  100 bits (252), Expect = 2e-26
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 10/119 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P  +  + P+ +++F WQ  I GP D+ + GG++   I  P++YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +Q  ICL I     + W P+ ++   L+++ + + T+PN
Sbjct: 82  FKPPKVNFTTKIYHPN--INSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 99.7 bits (249), Expect = 3e-26
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
              KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  +
Sbjct: 22  SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 81

Query: 69  EYPFKPPSFMLLTPNGRF----ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
            YPF  P  M    N        +   ICLSI     E W P+ SV++  +++I+ +
Sbjct: 82  RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  100 bits (251), Expect = 4e-26
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
              K +++EV E+++N          + N          P +  ++GG +    ++P  Y
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSI---SNHHPEHWQPSWSVRTALVALIAFMPT 123
              PP    LT    PN       +ICLS+    +     W P+ +++  +  L +    
Sbjct: 74  NMVPPKVKCLTKIWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTD 131

Query: 124 NPN 126
             N
Sbjct: 132 LLN 134

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  100 bits (250), Expect = 5e-26
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSI-SNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           F+PP    LT    PN   ++  +ICL +        W+PS ++ T L ++   M + PN
Sbjct: 65  FEPPQIRFLTPIYHPN--IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM-SEPN 121

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 99.6 bits (249), Expect = 5e-26
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI +E + + + P    M++P+ EN   +   I GP  T +EGG Y   + LP +YP +
Sbjct: 4   RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63

Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PP    LT    PN   +   +ICL I     + W P+  +RT L+++ A + ++P 
Sbjct: 64  PPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALL-SSPE 114

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 99.7 bits (249), Expect = 6e-26
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 21/130 (16%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
             A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+
Sbjct: 6   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65

Query: 65  QLPAEYPFKPPSFMLLTP--------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
               +YP  PP      P        +G       +CLSI     + W+P+ +++  L+ 
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYPSGT------VCLSIL-EEDKDWRPAITIKQILLG 118

Query: 117 LIAFMPTNPN 126
           +   +   PN
Sbjct: 119 IQELL-NEPN 127

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 99.3 bits (248), Expect = 6e-26
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
             + ++  +        +       +  ++     GP  T +EGGI+   + LP +YPF 
Sbjct: 2   TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61

Query: 74  PPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
            PS   +     PN    + + +CL + N   + W P +S+       +  + T PN
Sbjct: 62  SPSIGFMNKLLHPNVDEASGS-VCLDVIN---QTWTPLYSLVNVFEVFLPQLLTYPN 114

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 99.8 bits (249), Expect = 6e-26
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 16/132 (12%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHG 62
            +K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  
Sbjct: 21  GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSL 80

Query: 63  RIQLPAEYPFKPPSFMLLTP------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
           +I+   +YP  PP    +T       N          +S+       WQ S+S++  L  
Sbjct: 81  KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV----LAKWQNSYSIKVVLQE 136

Query: 117 LIAFM--PTNPN 126
           L   M    N  
Sbjct: 137 LRRLMMSKENMK 148

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 99.3 bits (248), Expect = 9e-26
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 10/119 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
             KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
            + P    LT    PN   +   +ICL +      +W P+  +RT L+++ A +  +PN
Sbjct: 66  MEAPKVRFLTKIYHPN--IDRLGRICLDVLK---TNWSPALQIRTVLLSIQALL-ASPN 118

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 99.3 bits (248), Expect = 1e-25
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 22/129 (17%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 7   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66

Query: 67  PAEYPFKPPSFMLLTP---------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 117
           P  YPF PP    +T           G       ICL I     + W  + ++RT L++L
Sbjct: 67  PETYPFNPPKVRFITKIWHPNISSVTGA------ICLDILK---DQWAAAMTLRTVLLSL 117

Query: 118 IAFMPTNPN 126
            A +     
Sbjct: 118 QALL-AAAE 125

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 99.4 bits (248), Expect = 1e-25
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92

Query: 65  QLPAEYPFKPPSFMLLT----PNGRFET--QTKICLSISNHHPEHWQPSWSVRTALVALI 118
           +   +YP  PP    +T                  +S+       WQ S+S++  L  L 
Sbjct: 93  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA----KWQNSYSIKVVLQELR 148

Query: 119 AFM--PTNPNGAL 129
             M    N     
Sbjct: 149 RLMMSKENMKLPQ 161

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  100 bits (250), Expect = 1e-25
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 21/174 (12%)

Query: 10  NPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 4   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 63

Query: 67  PAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP 122
           P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L A + 
Sbjct: 64  PETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQALL- 118

Query: 123 TNPN---------GALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHE 167
                              + +  ++ A       A     +PE  K I+ +  
Sbjct: 119 AAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCA 172

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 99.0 bits (247), Expect = 2e-25
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
                + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +
Sbjct: 17  RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD 76

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSI----------SNHHPEHWQPSWSVRTALV 115
           YP +PP    +T    PN   +    +C+SI               E W P  +V T ++
Sbjct: 77  YPLRPPKMKFITEIWHPN--VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134

Query: 116 ALIAFMPTNPN 126
           ++I+ +  +PN
Sbjct: 135 SVISML-ADPN 144

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFKPP     T    PN    T   ICL I       W P  ++++AL++L A +  +P 
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTG-AICLDILK---NAWSPVITLKSALISLQALL-QSPE 116

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 98.6 bits (246), Expect = 2e-25
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 26/134 (19%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63

Query: 71  PFKPPSFMLLT--------PNGRFETQTKICLSI----------SNHHPEHWQPSWSVRT 112
           P  PP              P+GR      +C+SI               E W P  SV  
Sbjct: 64  PLSPPKMRFTCEMFHPNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEK 117

Query: 113 ALVALIAFMPTNPN 126
            L+++++ +   PN
Sbjct: 118 ILLSVVSML-AEPN 130

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 21/130 (16%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +  ++R+ +E K+ + +    F + P+++     ++ +W+  I G   T + GG+Y   +
Sbjct: 3   SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITV 62

Query: 65  QLPAEYPFKPPSFMLLT--------PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
           + P EYP KPP              P+G       ICLSI  +  + W+P+ +++  ++ 
Sbjct: 63  EYPNEYPSKPPKVKFPAGFYHPNVYPSGT------ICLSIL-NEDQDWRPAITLKQIVLG 115

Query: 117 LIAFMPTNPN 126
           +   +  +PN
Sbjct: 116 VQDLL-DSPN 124

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 10/121 (8%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ ++  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    E
Sbjct: 47  STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YPFKPP     T     N    +Q  ICL I     ++W P+ ++   L+++ + + T+ 
Sbjct: 107 YPFKPPKVTFRTRIYHCN--INSQGVICLDILK---DNWSPALTISKVLLSICSLL-TDC 160

Query: 126 N 126
           N
Sbjct: 161 N 161

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 21/130 (16%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           +    R+ +E K+ + +    F + P +      ++  W+  I G   T +EGG+Y   +
Sbjct: 9   SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTM 68

Query: 65  QLPAEYPFKPPSFMLLT--------PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVA 116
             P EYP +PP              P+G       +CLSI  +  E W+P+ +++  L+ 
Sbjct: 69  AFPEEYPTRPPKCRFTPPLFHPNVYPSGT------VCLSIL-NEEEGWKPAITIKQILLG 121

Query: 117 LIAFMPTNPN 126
           +   +  +PN
Sbjct: 122 IQDLL-DDPN 130

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 10  NPAVKRILQEVKEMQ---------SNPSDDFMSLPL---EENIFEWQFAIRGPGDTEFEG 57
           +  + RI++E K +          +NP    +       E ++ +W+  I GP DT +E 
Sbjct: 5   DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64

Query: 58  GIYHGRIQLPAEYPFKPPSFMLLT-----PNGRFETQTKICLSISNHHPEHWQPSWSVRT 112
             +   I++P+ YP  PP    +       N +  T  +ICL+I    PE W P W +  
Sbjct: 65  HQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT-GEICLNIL--KPEEWTPVWDLLH 121

Query: 113 ALVALIAFMPTNPN 126
            + A+   +   P 
Sbjct: 122 CVHAVWRLL-REPV 134

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  102 bits (256), Expect = 4e-25
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ ++GG++   I  P +YP
Sbjct: 4   ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FKPP     T    PN    +   I L I       W P+ ++   L+++ + +  +PN
Sbjct: 64  FKPPKVAFTTRIYHPN--INSNGSISLDILR---SQWSPALTISKVLLSICSLL-CDPN 116

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 97.9 bits (244), Expect = 6e-25
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 26/135 (19%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
            + K +L E+K +Q  P + F    + E +++ W+ AI GP +T +EGG +  R++ P +
Sbjct: 7   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 66

Query: 70  YPFKPPSFMLLTP--------NGRFETQTKICLSI----------SNHHPEHWQPSWSVR 111
           YP+ PP+F  LT          G       +C+SI               E W P+ +VR
Sbjct: 67  YPYSPPAFRFLTKMWHPNIYETGD------VCISILHPPVDDPQSGELPSERWNPTQNVR 120

Query: 112 TALVALIAFMPTNPN 126
           T L+++I+ +   PN
Sbjct: 121 TILLSVISLL-NEPN 134

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 99.2 bits (247), Expect = 7e-25
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 21/192 (10%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSD---DFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGR 63
           ++ N AV+RI +E KE+  +            ++EN  E +  I GP DT +EGG Y   
Sbjct: 53  DMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 64  IQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIA 119
           I++P  YPF PP    +T    PN    T   ICL I     + W  + ++RT L++L A
Sbjct: 113 IKIPETYPFNPPKVRFITKIWHPNISSVTGA-ICLDILK---DQWAAAMTLRTVLLSLQA 168

Query: 120 FMPTNPN---------GALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYML 170
            +                    + +  ++ A       A     +PE  K I+ +     
Sbjct: 169 LL-AAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGF 227

Query: 171 SKAPPVPQLSTC 182
            +   +  LS+ 
Sbjct: 228 DRNAVIVALSSK 239

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 26/136 (19%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 3   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62

Query: 69  EYPFKPPSFMLLT--------PNGRFETQTKICLSI----------SNHHPEHWQPSWSV 110
           +YP  PP              PNG       +C+SI               E W P  SV
Sbjct: 63  DYPLSPPKLTFTPSILHPNIYPNGE------VCISILHSPGDDPNMYELAEERWSPVQSV 116

Query: 111 RTALVALIAFMPTNPN 126
              L+++++ + + PN
Sbjct: 117 EKILLSVMSML-SEPN 131

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 95.9 bits (239), Expect = 1e-24
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 19/134 (14%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIY 60
            +    P   R+L E++  Q     + +S  LE      +  W   I G   T FE  IY
Sbjct: 15  YFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIY 74

Query: 61  HGRIQLPAEYPFKPPSFMLLT--------PNGRFETQTKICLSISNHHPEHWQPSWSVRT 112
              I     YP  PP+    T          GR      +  +   H  ++W  ++++ T
Sbjct: 75  SLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGR------VIKNNL-HILKNWNRNYTIET 127

Query: 113 ALVALIAFMPTNPN 126
            L++L   M ++ N
Sbjct: 128 ILISLRQEMLSSAN 141

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEY
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFKPP     T    PN   + + ++CL +     E+W+P+      + +LIA +  +P 
Sbjct: 62  PFKPPKITFKTKIYHPN--IDEKGQVCLPVI--SAENWKPATKTDQVIQSLIALV-NDPQ 116

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 96.8 bits (241), Expect = 3e-24
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+       + E +I   +    GP  T +EGG +   I++P EY
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFKPP     T    PN    T   ICL I       W P  ++++AL++L A +  +P 
Sbjct: 63  PFKPPKMQFDTKVYHPNISSVTGA-ICLDILR---NAWSPVITLKSALISLQALL-QSPE 117

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 95.5 bits (238), Expect = 3e-24
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  +R+  +V ++  +  +      +   + E+     GP  T +EGG++  R+ LP +Y
Sbjct: 25  PGKRRMDTDVIKLIESKHEV----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKY 80

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFK PS   +     PN    + T +CL + N   + W   + +     + +  +   PN
Sbjct: 81  PFKSPSIGFMNKIFHPNIDEASGT-VCLDVIN---QTWTALYDLTNIFESFLPQLLAYPN 136

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 94.6 bits (236), Expect = 4e-24
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W  A+  P    +    ++ RI  P EY
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63

Query: 71  PFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFKPP     T    PN   +   +ICL I     E+W+P       L AL   +   PN
Sbjct: 64  PFKPPMIKFTTKIYHPN--VDENGQICLPII--SSENWKPCTKTCQVLEALNVLV-NRPN 118

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 95.1 bits (237), Expect = 5e-24
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++       +   + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 13  SNRRREMDYMRLCNST----RKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 68

Query: 72  FKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           FK PS         PN    +   +CL + N   + W P + +       +  +   PN
Sbjct: 69  FKSPSIGFCNRILHPNVDERS-GSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPN 123

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 92.2 bits (229), Expect = 1e-22
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 22/143 (15%)

Query: 1   MAEDRYNLKNPAVKRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAI 47
           MA  +         R+L+E+ ++Q              + S    +  +  +I  W+  I
Sbjct: 22  MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFI 81

Query: 48  RGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEH 103
            GP  T +EGG +   I +P +YP+ PP    +T    PN   +T   ICL I       
Sbjct: 82  AGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT-GAICLDILK---HE 137

Query: 104 WQPSWSVRTALVALIAFMPTNPN 126
           W P+ ++RTAL+++ A +  +P 
Sbjct: 138 WSPALTIRTALLSIQAML-ADPV 159

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 88.9 bits (221), Expect = 7e-22
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 5   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YP  PP     T    PN   + +  +CL+I     E W+P  ++ + +  L       P
Sbjct: 63  YPHDPPKVKCETMVYHPN--IDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLF-LEP 116

Query: 126 N 126
           N
Sbjct: 117 N 117

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFA----IRGPGDTEFEGGIYHGRIQ 65
           + A  R+ +++  +   P+     +   ++    Q      I  P +  +  G  +  + 
Sbjct: 28  SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLD 87

Query: 66  LPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
               YP +PP  + L     PN   + +  +CL+I     E W P+  +++ +  L+   
Sbjct: 88  FNEVYPIEPPKVVCLKKIFHPN--IDLKGNVCLNILR---EDWSPALDLQSIITGLLFLF 142

Query: 122 PTNPN 126
              PN
Sbjct: 143 -LEPN 146

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 87.0 bits (216), Expect = 6e-21
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    +   +S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 25  SAAQLRIQKDINELNLPKTC-DISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82

Query: 70  YPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 125
           YP  PP     T    PN   + +  + L+I     E W+P  ++ + +  L       P
Sbjct: 83  YPHDPPKVKCETMVYHPN--IDLEGNVALNILR---EDWKPVLTINSIIYGLQYLF-LEP 136

Query: 126 N 126
           N
Sbjct: 137 N 137

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 86.0 bits (213), Expect = 1e-20
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 9   KNPAVKRILQEVKEMQ------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEF- 55
           KN + KRI++++K +              +P    +     + I+ W   ++ P D+ + 
Sbjct: 6   KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 56  -EGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSV 110
             G  Y   +    +YP +PP+   +T    P      +  IC  + N   + W P    
Sbjct: 66  GAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPL--VTGEGGICDRMVN---DFWTPDQHA 120

Query: 111 RTALVALIA--FMPTNPN 126
              +  ++   F      
Sbjct: 121 SDVIKLVLDRVFSQYKSR 138

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 86.7 bits (214), Expect = 9e-20
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
                +R+ QE   + ++      S       EE +   +  I GP DT +  G +   +
Sbjct: 74  SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133

Query: 65  QLPAEYPFKPPSFMLLTPNG---RFE----TQTKICLSI----SNHHPEHWQPSWSVRTA 113
             P +YP  PP   L T  G   RF        K+CLSI         E W P  S    
Sbjct: 134 YFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQ 193

Query: 114 LVALIAFMPTNPN 126
           ++  +  +     
Sbjct: 194 VLVSVQSLILVAE 206

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 80.0 bits (197), Expect = 3e-18
 Identities = 16/135 (11%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 10  NPAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGIYHG--- 62
             A  R+++E++++  + S     +    + +++++W   ++    D+     +      
Sbjct: 26  VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 85

Query: 63  --------RIQLPAEYPFKPPSFMLLTP---NGRFETQTKICLSISNHHPEHWQPSWSVR 111
                          +PF PP   ++ P    G       +C+ +     + W  ++S+ 
Sbjct: 86  EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELL--TKQGWSSAYSIE 143

Query: 112 TALVALIAFMPTNPN 126
           + ++ + A +     
Sbjct: 144 SVIMQINATL-VKGK 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.97
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.97
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.86
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.54
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.51
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.19
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.59
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	94.01
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	93.38
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	90.65
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	87.66
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	87.54
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	83.0
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	80.67

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-41  Score=292.39  Aligned_cols=151  Identities=24%  Similarity=0.468  Sum_probs=138.5

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      |+....+|+..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+
T Consensus         3 ~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   82 (158)
T 1zdn_A            3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL   82 (158)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec
Confidence            67777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           81 TPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        81 TPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                      ||++  ||+.+|+||+++|+   +.|+|.++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||
T Consensus        83 t~i~HPnv~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           83 TKIFHPNVGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             SCCCCTTBCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cCcccCCCCCCCEEehhhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9876  68889999999997   8899999999999999999965 7778776  578889999999999999999997

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.2e-41  Score=286.63  Aligned_cols=146  Identities=25%  Similarity=0.478  Sum_probs=135.6

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      ||..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++  |
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN   81 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      |+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|+++||..
T Consensus        82 v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           82 VDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             BCTTCBBCCHHHH---TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CccCCeEEchhcc---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            8889999999997   8899999999999999999975 7888876  57888999999999999999999964

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=2.1e-40  Score=283.08  Aligned_cols=144  Identities=25%  Similarity=0.611  Sum_probs=136.0

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      +..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.||++  ||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999976  58


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +.+|+||+++|+   ++|+|.++|++||.+|+++|.+ ||+++++  |+.+|++|++.|.++||+|+++||.
T Consensus        82 ~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A           82 NKNGVICLDILK---DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEEccccc---CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            899999999998   8999999999999999999965 8888876  5788899999999999999999986

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.2e-40  Score=283.17  Aligned_cols=146  Identities=27%  Similarity=0.557  Sum_probs=136.8

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      |++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++  |
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN   80 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      |+.+|+||+++|.   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|+++|+..
T Consensus        81 v~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           81 IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             BCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCEEechhhc---CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            8889999999997   8899999999999999999965 7788876  57888999999999999999999864

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-40  Score=289.22  Aligned_cols=147  Identities=24%  Similarity=0.524  Sum_probs=136.9

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      |++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|+||++  |
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN   80 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   80 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      |+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|+++++.|.++||+|+++|+...
T Consensus        81 I~~~G~ICl~iL~---~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~  152 (169)
T 1ayz_A           81 VYANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD  152 (169)
T ss_dssp             BCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEeehhhc---cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Confidence            8889999999997   8899999999999999999965 7788876  578889999999999999999998654

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-40  Score=285.46  Aligned_cols=146  Identities=28%  Similarity=0.605  Sum_probs=134.9

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      -..++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++ 
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           16 NLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             ---CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            3455669999999999999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             -eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           85 -RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        85 -nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                       ||+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|++|||
T Consensus        96 PNI~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           96 PNINSQGAICLDILK---DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCeEEccccc---ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence             68899999999998   8999999999999999999965 7888876  568889999999999999999997

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.5e-40  Score=285.54  Aligned_cols=149  Identities=23%  Similarity=0.454  Sum_probs=138.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      |..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++  ||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999976  68


Q ss_pred             cCCCcEEeccCCCCC-CCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           87 ETQTKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        87 ~~~G~IClsiL~~~~-e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      +.+|+||+++|+.++ +.|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|+++|.++||+|+++||...
T Consensus        82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence            899999999998665 7899999999999999999965 7888876  568889999999999999999999864

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=5.1e-40  Score=280.34  Aligned_cols=144  Identities=27%  Similarity=0.604  Sum_probs=134.8

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      |..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++  ||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   81 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999865  68


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||.
T Consensus        82 ~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           82 NSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCeEeecccc---CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899999999998   8999999999999999999964 7888876  5688899999999999999999984

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.1e-39  Score=282.94  Aligned_cols=145  Identities=28%  Similarity=0.599  Sum_probs=135.7

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      ..+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.||++  |
T Consensus        16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn   95 (165)
T 2c4o_A           16 RGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   95 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence            45579999999999999999999999999999999999999999999999999999999999999999999999865  7


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|+++||.
T Consensus        96 V~~~G~ICl~iL~---~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           96 INSNGSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCeEeehhhc---CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8899999999998   8999999999999999999964 7888876  5688899999999999999999984

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=8.2e-40  Score=280.85  Aligned_cols=149  Identities=26%  Similarity=0.506  Sum_probs=136.8

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      ||.+  .|+..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus         1 m~~~--~~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (156)
T 2e2c_A            1 MTTS--KERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CCCC--CSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CCcc--ccchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe
Confidence            6633  45667999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           81 TPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        81 TPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      ||++  ||+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+| +|+++|.++||+|+++|+.
T Consensus        79 t~i~HPnv~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A           79 TPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             SCCCBTTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCccCceEECcccc---ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence            9987  68899999999997   8899999999999999999965 7788876  56777 8999999999999999864

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.7e-40  Score=282.64  Aligned_cols=148  Identities=22%  Similarity=0.498  Sum_probs=134.4

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--   84 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~-dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--   84 (301)
                      |++.+.+||++|+++|++++++||++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+||++  
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   80 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence            678899999999999999999999999875 79999999999999999999999999999999999999999999876  


Q ss_pred             eecCCCcEEeccCCC----------CCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHh
Q 022163           85 RFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAP  151 (301)
Q Consensus        85 nv~~~G~IClsiL~~----------~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~  151 (301)
                      ||+.+|+||+++|..          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|++
T Consensus        81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~  160 (165)
T 2ucz_A           81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSIL  160 (165)
T ss_dssp             TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            588999999999942          147899999999999999999965 6677766  578889999999999999999


Q ss_pred             hhCC
Q 022163          152 KFGT  155 (301)
Q Consensus       152 kya~  155 (301)
                      +|..
T Consensus       161 ~~~~  164 (165)
T 2ucz_A          161 KSLG  164 (165)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9864

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=9.8e-40  Score=289.85  Aligned_cols=152  Identities=24%  Similarity=0.440  Sum_probs=130.5

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCC-------------CCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcC
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPS-------------DDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP   67 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~-------------~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP   67 (301)
                      ||.+...-+..+.+||++|+++|+++++             .||++.+.++|+++|+++|.||++|||+||+|+|+|.||
T Consensus        22 m~~~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp  101 (193)
T 2f4z_A           22 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP  101 (193)
T ss_dssp             ----------CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECC
Confidence            6666555566799999999999999887             799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeEEecCCc--eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHH
Q 022163           68 AEYPFKPPSFMLLTPNG--RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRA  141 (301)
Q Consensus        68 ~dYP~~PP~V~FlTPn~--nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~  141 (301)
                      ++||++||+|+|+||++  ||+ .+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.
T Consensus       102 ~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~  178 (193)
T 2f4z_A          102 PDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPL  178 (193)
T ss_dssp             TTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHH
T ss_pred             CcCCCCCCeEEEecCCccCCCcCCCCEEECcccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHH
Confidence            99999999999999876  577 58999999998   7899999999999999999965 7888876  57888999999


Q ss_pred             HHHHHHHHHhhhCC
Q 022163          142 LAIKSREAAPKFGT  155 (301)
Q Consensus       142 f~~kare~~~kya~  155 (301)
                      |.++||+|+++||.
T Consensus       179 f~~~ar~~t~~ya~  192 (193)
T 2f4z_A          179 FVQTAKLWTETFAK  192 (193)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999999999985

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.4e-39  Score=277.52  Aligned_cols=141  Identities=27%  Similarity=0.585  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT   90 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G   90 (301)
                      .+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++  ||+.+|
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   82 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   82 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999976  588999


Q ss_pred             cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      +||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|+++||..
T Consensus        83 ~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           83 RICLDILK---DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             BBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             EEechhcC---CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            99999998   8999999999999999999965 7788876  56888999999999999999999964

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=2.1e-39  Score=279.10  Aligned_cols=146  Identities=29%  Similarity=0.499  Sum_probs=135.5

Q ss_pred             CCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC
Q 022163            7 NLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN   83 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~---p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn   83 (301)
                      .|++.+.+||++|+++|+++   ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||+
T Consensus         4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   83 (159)
T 2bep_A            4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   83 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence            58889999999999999985   578999999999999999999999999999999999999999999999999999987


Q ss_pred             c--eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           84 G--RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        84 ~--nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +  ||+ .+|+||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||.
T Consensus        84 ~HPni~~~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           84 WHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             CBTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CccCCCCCCCEEeChhhh---ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            6  577 48999999998   8899999999999999999965 7888876  5688899999999999999999985

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.3e-39  Score=280.41  Aligned_cols=148  Identities=22%  Similarity=0.457  Sum_probs=133.9

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCC-----CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEec
Q 022163            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~d-----nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      .-|..+.+||++|+++|++++++||++.|.++     |+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            34678999999999999999999999999866     9999999999999999999999999999999999999999999


Q ss_pred             CCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           82 PNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        82 Pn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +++  ||+.+|+||+++|+. .++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|++|||.
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~-~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNE-EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCCcEeccccCC-CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence            876  688899999999983 24699999999999999999965 7777766  5688899999999999999999984

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.2e-39  Score=278.52  Aligned_cols=147  Identities=22%  Similarity=0.453  Sum_probs=132.8

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~-----dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      |++.+.+||++|+++|++++++||++.|.+     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            677899999999999999999999999875     489999999999999999999999999999999999999999998


Q ss_pred             Cc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           83 NG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        83 n~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      ++  ||+.+|+||+++|+.. ++|+|+++|++||.+|+++|.+ +|+++++  |+.+|++|+++|.++||+|+++||.
T Consensus        81 i~HPnv~~~G~iCl~iL~~~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           81 FYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             CCCTTBCTTSBBCCGGGCTT-TTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             CccCCCCCCCcEeeecccCC-CCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            76  6888999999999831 3799999999999999999965 6777766  5688899999999999999999984

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=3.5e-39  Score=278.76  Aligned_cols=146  Identities=26%  Similarity=0.540  Sum_probs=133.9

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      ++.+.+||++|+++|++++++||++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++  |
T Consensus         1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN   80 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence            356899999999999999999999998865 9999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCC----------CCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           86 FETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        86 v~~~G~IClsiL~~----------~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      |+.+|+||+++|+.          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|+++|.++||+|++|
T Consensus        81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~  160 (164)
T 3h8k_A           81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            88899999999963          237899999999999999999965 7788876  5788899999999999999998


Q ss_pred             hC
Q 022163          153 FG  154 (301)
Q Consensus       153 ya  154 (301)
                      ++
T Consensus       161 s~  162 (164)
T 3h8k_A          161 SL  162 (164)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.3e-39  Score=279.39  Aligned_cols=143  Identities=27%  Similarity=0.544  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      .+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++  ||+.
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999876  6888


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      +|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||..
T Consensus        85 ~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~  152 (155)
T 1jat_A           85 LGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  152 (155)
T ss_dssp             TCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCEEEchhhc---cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            9999999997   8999999999999999999965 7788776  56888899999999999999999964

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=4e-39  Score=277.99  Aligned_cols=148  Identities=24%  Similarity=0.473  Sum_probs=135.0

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEec
Q 022163            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~-----dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      +|++.+.+||++|+++|++++++||.+.|..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            5888999999999999999999999998863     68999999999999999999999999999999999999999999


Q ss_pred             CCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           82 PNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        82 Pn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |++  ||+.+|+||+++|+. .+.|+|.++|++||.+|++||.+ +++++++  |+.+|++|+++|.++||+|+++||.
T Consensus        83 ~i~HPnv~~~G~iCl~iL~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           83 PLFHPNVYPSGTVCLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             CCCSTTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CcccCCCCCCCeEeehhcCC-CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            876  688899999999973 24899999999999999999965 6777765  6788899999999999999999986

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1.5e-39  Score=277.14  Aligned_cols=141  Identities=26%  Similarity=0.493  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      +.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++  ||+.
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            579999999999999999999999887 9999999999999999999999999999999999999999999876  5777


Q ss_pred             -CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           89 -QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        89 -~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                       +|+||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||.
T Consensus        82 ~~G~iCl~iL~---~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           82 VTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             SSCCBCCHHHH---TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CCCeEeCCcCC---CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence             8999999997   8899999999999999999965 7788876  5788899999999999999999984

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=9.1e-39  Score=283.81  Aligned_cols=143  Identities=27%  Similarity=0.559  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      +.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|+|+++  ||+
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999976  688


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      .+|.|||++|+   +.|+|.++|++||.+|++||.+ ||+++++  ++.+|.+|+++|.++||+|+++||.
T Consensus       127 ~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          127 SQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCceechhhh---ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            89999999997   8999999999999999999965 8888877  5688899999999999999999984

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=6.4e-39  Score=285.85  Aligned_cols=146  Identities=29%  Similarity=0.500  Sum_probs=134.6

Q ss_pred             CChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            8 LKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~---p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      |++.+.+||++|+++|+++   ++.||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            7788999999999999987   3689999999999999999999999999999999999999999999999999999876


Q ss_pred             --eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           85 --RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        85 --nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                        ||+ .+|+||+++|.   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||..
T Consensus        82 HPnv~~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A           82 HPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             BTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcCCCCeeeCcccc---cCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence              577 48999999997   8999999999999999999965 8888887  57888999999999999999999976

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=5.9e-39  Score=289.32  Aligned_cols=150  Identities=25%  Similarity=0.515  Sum_probs=138.0

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      ..+.+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|+||++ 
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            4456789999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             -eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 022163           85 -RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  158 (301)
Q Consensus        85 -nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~r  158 (301)
                       ||+ .+|.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||....
T Consensus        98 PNI~~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~  173 (216)
T 2pwq_A           98 PNISSQTGAICLDVLK---NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPK  173 (216)
T ss_dssp             TTBCTTTCBBCCHHHH---HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred             CCCcCCCCEEEchhhc---ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCc
Confidence             577 47999999997   7899999999999999999965 8888877  5688899999999999999999998754

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.2e-38  Score=291.63  Aligned_cols=161  Identities=27%  Similarity=0.487  Sum_probs=143.7

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhC---CCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            4 DRYNLKNPAVKRILQEVKEMQSN---PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         4 ~~~~ms~~a~kRL~kEl~~L~~~---p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      ++.+|++.+.+||++||++|+++   ++.||++.|.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.
T Consensus        50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~  129 (253)
T 3e46_A           50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI  129 (253)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence            36899999999999999999987   468999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           81 TPNG--RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        81 TPn~--nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                      ||++  ||+ .+|.||+++|.   +.|+|.++|++||.+|++||.+ ||+++++  |+.+|.+|++.|.++||+|+++||
T Consensus       130 T~i~HPNV~~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA  206 (253)
T 3e46_A          130 TKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  206 (253)
T ss_dssp             SCCCBTTBCTTTCBBCCGGGT---TCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCccCCCCeeeccccc---CCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9876  577 48999999997   8999999999999999999965 8888887  578889999999999999999999


Q ss_pred             Chh-----HHHHHHHHHH
Q 022163          155 TPE-----RQKLIDEIHE  167 (301)
Q Consensus       155 ~~~-----r~~l~~~~~~  167 (301)
                      ...     +.+.++.+.+
T Consensus       207 ~~~~~~~~~~~~v~~l~~  224 (253)
T 3e46_A          207 GAPVSSPEYTKKIENLCA  224 (253)
T ss_dssp             CCSCCCHHHHHHHHHHHH
T ss_pred             ccccCcchHHHHHHHHHH
Confidence            762     3445555544

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7e-39  Score=281.30  Aligned_cols=147  Identities=26%  Similarity=0.461  Sum_probs=133.4

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--
Q 022163            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--   84 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--   84 (301)
                      +|+..+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++  
T Consensus        26 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  105 (179)
T 1i7k_A           26 AARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP  105 (179)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence            378889999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           85 RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        85 nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      ||+.+|+||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  |+.+| +|+++|.++||+++++++...
T Consensus       106 NV~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          106 NVDTQGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             TBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             ccccCCeEEcccCc---CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence            58889999999997   8899999999999999999965 7788876  56788 999999999999999998654

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=5.6e-38  Score=272.06  Aligned_cols=149  Identities=17%  Similarity=0.330  Sum_probs=134.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      -+..+.+.+||++|+++|++++++||++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|+||++
T Consensus         9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   87 (167)
T 3fn1_B            9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW   87 (167)
T ss_dssp             CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred             ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence            3455689999999999999999999999855 68999999999 899999999999999999999999999999999876


Q ss_pred             --eecCCCcEEeccCCCC---CCCCCccccHHHHHHHHHHhCCC--CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           85 --RFETQTKICLSISNHH---PEHWQPSWSVRTALVALIAFMPT--NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        85 --nv~~~G~IClsiL~~~---~e~WsP~~tI~~IL~~I~~lL~~--nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                        ||+.+|+||+++|+.+   +++|+|.++|++||.+|++||.+  ||+++++  |+.+|++|++.|.++||+|+++||.
T Consensus        88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B           88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence              6888999999999853   35899999999999999999976  6778776  5788899999999999999999984

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=2.5e-38  Score=271.18  Aligned_cols=144  Identities=24%  Similarity=0.448  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEE-ecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a-~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      .+.+||++|+++|++++++||.+ .+.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.||++  ||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            47899999999999999999999 788999999999999 99999999999999999999999999999999876  688


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      .+|+||+++|+  .++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++||...
T Consensus        83 ~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A           83 ENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             TTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             CCCeEeecCCC--ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            89999999993  28999999999999999999965 7778876  578889999999999999999999753

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-38  Score=276.23  Aligned_cols=146  Identities=16%  Similarity=0.377  Sum_probs=133.9

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         5 ~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      ..+|++.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++
T Consensus        17 ~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~   96 (169)
T 1yrv_A           17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF   96 (169)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred             cCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             --ee-cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           85 --RF-ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        85 --nv-~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                        || +.+|+||+++|+ +++.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++ |+++++
T Consensus        97 HPNI~~~~G~ICL~iL~-~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           97 HPNVDPHTGQPCIDFLD-NPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             CTTBCTTTCCBCCHHHH-CGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             cCcccCCCCeEeehhhc-CCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence              57 789999999997 346899999999999999999965 7788876  678889999999988 888754

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1e-37  Score=281.01  Aligned_cols=144  Identities=25%  Similarity=0.481  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~d-nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      ++.+||++|+++|++++++||++.|.++ ++++|+++|.||++|||+||+|++.|.||++||++||+|+|.||++  ||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            3789999999999999999999999876 5669999999999999999999999999999999999999999876  577


Q ss_pred             C-CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           88 T-QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        88 ~-~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      . +|.||+++|+   +.|+|+++|++||.+|++||.+ ||+++++  ++.+|.+|++.|.++||+|+++||...
T Consensus        82 ~~~G~ICL~iL~---~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~  152 (215)
T 1tte_A           82 SVTGAICLDILR---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASET  152 (215)
T ss_dssp             SSSSCCCSSTTT---CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCEEECccCC---CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Confidence            7 8999999998   8999999999999999999975 8888876  468889999999999999999999653

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=6e-37  Score=269.64  Aligned_cols=147  Identities=27%  Similarity=0.536  Sum_probs=130.6

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~-p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      +..+.|||++|+++|++++++||++. +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+||++  |
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   84 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN   84 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCC
Confidence            35799999999999999999999998 67889999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCCC----------CCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHH------hHHHHHHHH
Q 022163           86 FETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE------ERRALAIKS  146 (301)
Q Consensus        86 v~~~G~IClsiL~~~----------~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~e------dr~~f~~ka  146 (301)
                      |+.+|+||+++|...          .+.|+|.++|++||.+|++||.+ ||+++++  |+.+|++      ++++|.+++
T Consensus        85 V~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v  164 (183)
T 3rz3_A           85 IYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDII  164 (183)
T ss_dssp             BCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             CCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHH
Confidence            889999999999621          27899999999999999999965 7778776  5677777      678999999


Q ss_pred             HHHHhhhCC
Q 022163          147 REAAPKFGT  155 (301)
Q Consensus       147 re~~~kya~  155 (301)
                      |+++.++..
T Consensus       165 ~~~v~~s~~  173 (183)
T 3rz3_A          165 RKQVLGTKV  173 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=5.6e-37  Score=267.39  Aligned_cols=147  Identities=21%  Similarity=0.375  Sum_probs=129.6

Q ss_pred             CCChHHHHHHHHHHHHHhh-C-C------CC---CeEEec-CCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCC
Q 022163            7 NLKNPAVKRILQEVKEMQS-N-P------SD---DFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP   74 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~-~-p------~~---gi~a~p-~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~P   74 (301)
                      .|++.+.+||++|+++|++ + +      +.   ++.+.| .++|+++|+++|.||++|||+||+|+|+|.||++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            4888999999999999998 5 3      33   466778 788999999999999999999999999999999999999


Q ss_pred             CeeEEec-CCc--eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHH-hHHHHHHHH
Q 022163           75 PSFMLLT-PNG--RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE-ERRALAIKS  146 (301)
Q Consensus        75 P~V~FlT-Pn~--nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~e-dr~~f~~ka  146 (301)
                      |+|+|+| +++  ||+ .+|+||+++|+  ++.|+|+++|++||.+|++||.+ ||+++++  |+.+|++ |++.|.++|
T Consensus        82 P~v~f~t~~i~HPni~~~~G~iCl~iL~--~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~  159 (172)
T 2y9m_A           82 PKISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV  159 (172)
T ss_dssp             CEEEECTTSCCCTTEETTTTEECCGGGS--TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHH
T ss_pred             CEEEEeeCCeecCCCcCCCCEEeccccC--CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHH
Confidence            9999999 765  574 68999999996  47899999999999999999965 7888876  5788888 999999999


Q ss_pred             HHHHhhhCC
Q 022163          147 REAAPKFGT  155 (301)
Q Consensus       147 re~~~kya~  155 (301)
                      |+|++++..
T Consensus       160 ~~~~~~~~~  168 (172)
T 2y9m_A          160 KYFLAERER  168 (172)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998764

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=4.2e-37  Score=268.26  Aligned_cols=141  Identities=23%  Similarity=0.559  Sum_probs=106.7

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCC-CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~-dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      +..+.+||++|+++|++++++||++.|.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+||++  |
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN   94 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN   94 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence            45789999999999999999999999875 79999999999999999999999999999999999999999999876  6


Q ss_pred             ecCCCcEEeccCCC----------CCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHH-HHHHHHHHH
Q 022163           86 FETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERR-ALAIKSREA  149 (301)
Q Consensus        86 v~~~G~IClsiL~~----------~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~-~f~~kare~  149 (301)
                      |+.+|+||+++|+.          +.+.|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++ +|.++||+|
T Consensus        95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            88999999999973          136899999999999999999965 6777776  5788899999 999999875

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.2e-37  Score=270.13  Aligned_cols=156  Identities=40%  Similarity=0.799  Sum_probs=124.9

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCcee
Q 022163            7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRF   86 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv   86 (301)
                      +.++.+.+||++|+++|++++++||.+.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|||++|
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~   89 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   89 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCcee
Confidence            55667999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchhhhHhhHHhHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEI  165 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~A~~~~~edr~~f~~kare~~~kya~~~r~~l~~~~  165 (301)
                      +.+|+||+++|++|++.|+|+++|++||.+|++||.+ +|+  .+++.....+++.|++.++.|.++.  +.+.++..++
T Consensus        90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~--~g~~~~~~~~r~~~a~~s~~~~~~~--~~f~~~fp~~  165 (187)
T 2f4w_A           90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT--LGSIETSDFTKRQLAVQSLAFNLKD--KVFCELFPEV  165 (187)
T ss_dssp             CTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCC--TTBCCCCHHHHHHHHHHHHHHHHTC--HHHHHHCHHH
T ss_pred             ccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCC--CcccccChHHHHHHHHHHHHHhhcC--chHHHhhHHH
Confidence            9999999999977778999999999999999999953 443  4444445678999999999998765  3444444443


Q ss_pred             H
Q 022163          166 H  166 (301)
Q Consensus       166 ~  166 (301)
                      .
T Consensus       166 ~  166 (187)
T 2f4w_A          166 V  166 (187)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.6e-37  Score=264.62  Aligned_cols=143  Identities=26%  Similarity=0.563  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec-CCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p-~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      +.+||++|+++|++++++|+.+.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.||++  ||+.
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   81 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   81 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence            678999999999999999998654 5789999999998 99999999999999999999999999999999987  5889


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      +|+||+++|+  +++|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|++.|.++||+|+++||...
T Consensus        82 ~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           82 KGQVCLPVIS--AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             TCBBCCTTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred             CCEEECCCCC--CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence            9999999995  37899999999999999999965 7778776  568888999999999999999999754

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2.1e-37  Score=265.06  Aligned_cols=142  Identities=19%  Similarity=0.423  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec-
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE-   87 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~-   87 (301)
                      ++.+||++|+++|+++   |+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+||++  ||+ 
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~   78 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE   78 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence            3568999999999874   7888889999999999999999999999999999999999999999999999876  577 


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHH-HHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  158 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~-I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~r  158 (301)
                      .+|+||+++|+   +.|+|+++|++||.+ |++||.+ ||+++++  |+.+|++|++.|.++||+|+++||...+
T Consensus        79 ~~G~iCl~il~---~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~  150 (152)
T 2onu_A           79 ASGSVCLDVIN---QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL  150 (152)
T ss_dssp             TTCBBCHHHHH---HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred             cCCeEeccccc---ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence            48999999997   789999999999999 5788854 7778776  6788899999999999999999998754

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=269.61  Aligned_cols=146  Identities=23%  Similarity=0.438  Sum_probs=128.4

Q ss_pred             CCCCh--HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC
Q 022163            6 YNLKN--PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN   83 (301)
Q Consensus         6 ~~ms~--~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn   83 (301)
                      ..|++  ++.+||++|+++|+.   .|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|++
T Consensus        18 ~~ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i   93 (179)
T 2z5d_A           18 GSMSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI   93 (179)
T ss_dssp             -----CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             ccCCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCC
Confidence            45655  589999999999985   47888877 6789999999999999999999999999999999999999999987


Q ss_pred             c--eecC-CCcEEeccCCCCCCCCCccccHHHHHHH-HHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           84 G--RFET-QTKICLSISNHHPEHWQPSWSVRTALVA-LIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        84 ~--nv~~-~G~IClsiL~~~~e~WsP~~tI~~IL~~-I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      +  ||+. +|+||+++|+   +.|+|+++|++||.+ |++||.+ ||+++++  |+.+|++|+++|.++||+|+++||..
T Consensus        94 ~HPNV~~~~G~ICL~iL~---~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A           94 FHPNIDEASGTVCLDVIN---QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             CBTTBCTTTCBBCHHHHH---HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             ccCcCCCCCCeEeccccc---cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            6  5787 9999999997   789999999999999 9999964 7777776  57888999999999999999999986


Q ss_pred             hH
Q 022163          157 ER  158 (301)
Q Consensus       157 ~r  158 (301)
                      ..
T Consensus       171 ~~  172 (179)
T 2z5d_A          171 EA  172 (179)
T ss_dssp             HH
T ss_pred             ch
Confidence            54

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6e-36  Score=258.08  Aligned_cols=138  Identities=18%  Similarity=0.377  Sum_probs=126.3

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~-p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      .+.+.+||++|+++|  ++++|+++. |.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.||++  |
T Consensus         4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (160)
T 1y8x_A            4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   80 (160)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence            356999999999999  567899987 7889999999998 999999999999999999999999999999999876  5


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      |+.+|+||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|++.
T Consensus        81 v~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           81 IDLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             BCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             CCCCCeEEcccch---hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            8889999999998   8899999999999999999965 7777776  5788899999999999999863

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.9e-36  Score=261.72  Aligned_cols=141  Identities=17%  Similarity=0.335  Sum_probs=129.1

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEe-cCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSL-PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~-p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      .+.++.+.+||++|+++|  ++++|+++. |.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.||++
T Consensus        21 ~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~   97 (180)
T 2nvu_C           21 SKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   97 (180)
T ss_dssp             CCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             cCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence            456778999999999999  577899987 8899999999999 999999999999999999999999999999999876


Q ss_pred             --eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           85 --RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        85 --nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                        ||+.+|.||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|.+|++.|.++||+|++.
T Consensus        98 HPNV~~~G~iCl~iL~---~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C           98 HPNIDLEGNVALNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             BTTBCTTSBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred             cCCCCCCCcEEccccc---ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence              68889999999998   8899999999999999999965 7777776  5788899999999999999874

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.6e-35  Score=288.24  Aligned_cols=145  Identities=27%  Similarity=0.572  Sum_probs=136.7

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      +.+.|||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++  ||+
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999876  688


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      .+|.||+++|+   ++|+|+++|++||.+|++||.+ ||+++++  |+.+|++|++.|.++||+|+++|+...
T Consensus        82 ~~G~iCl~il~---~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~  151 (399)
T 4ddg_A           82 SNGSISLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGG  151 (399)
T ss_dssp             TTCBBCCGGGT---TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCT
T ss_pred             CCCeEeCcccc---cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccc
Confidence            89999999997   8999999999999999999965 8888877  578889999999999999999999763

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=5.1e-36  Score=261.29  Aligned_cols=140  Identities=21%  Similarity=0.429  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec-
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE-   87 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~-   87 (301)
                      ++.+||++|+++|++++. ++   +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++  ||+ 
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence            478999999999999874 44   35789999999999999999999999999999999999999999999876  678 


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHH-HHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChh
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVAL-IAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPE  157 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I-~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~  157 (301)
                      .+|+||+++|+   +.|+|+++|++||.+| ++||.+ ||+++++  |+.+|.+|++.|.++||+|+++|+...
T Consensus        88 ~~G~iCl~iL~---~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~~  158 (171)
T 1yf9_A           88 RSGSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQ  158 (171)
T ss_dssp             TTCBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHH
T ss_pred             cCCeEeccccc---cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcChh
Confidence            58999999997   7899999999999998 688854 7777776  568889999999999999999999864

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=4.1e-35  Score=243.15  Aligned_cols=114  Identities=27%  Similarity=0.515  Sum_probs=102.3

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC-
Q 022163            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN-   83 (301)
Q Consensus         5 ~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn-   83 (301)
                      +|||+. +.+||++|+++|++++++|+.+.+.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.|++ 
T Consensus         1 ~~~m~~-a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   79 (125)
T 2fo3_A            1 KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP   79 (125)
T ss_dssp             ---------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred             CCCchH-HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCC
Confidence            588964 889999999999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             c--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC
Q 022163           84 G--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  122 (301)
Q Consensus        84 ~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~  122 (301)
                      +  ||+.+|+||+++|+   ++|+|+++|++||.+|++||.
T Consensus        80 ~HPnv~~~G~iCl~iL~---~~W~P~~~i~~vl~si~~ll~  117 (125)
T 2fo3_A           80 KHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISMLS  117 (125)
T ss_dssp             CBTTBCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCcCCCCCEEEchhcC---CCCCCCCcHHHHHHHHHHHHh
Confidence            6  68899999999997   899999999999999999994

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=6.1e-35  Score=258.40  Aligned_cols=143  Identities=17%  Similarity=0.313  Sum_probs=130.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEe----cCCCCcc---EEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeE
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSL----PLEENIF---EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM   78 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~----p~~dnl~---~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~   78 (301)
                      .+..+.+.+||++|+++|+  +++|+++.    |.++|++   +|+++|. |++|||+||+|++.|.||++||++||+|+
T Consensus        24 ~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           24 QPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             SCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             CCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            4556789999999999999  67899887    8899999   9999997 78899999999999999999999999999


Q ss_pred             EecCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhh
Q 022163           79 LLTPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  153 (301)
Q Consensus        79 FlTPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~ky  153 (301)
                      |.||++  ||+.+|+||+++|+   ++|+|.++|++||.+|+++|.+ ||+++++  |+.+|.+|++.|.++||+|++.+
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~---~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~  177 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILR---EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG  177 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred             EecCcccCCCCCCCeEechhcc---CCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence            999876  68889999999998   8999999999999999999965 8888887  57888999999999999999765


Q ss_pred             C
Q 022163          154 G  154 (301)
Q Consensus       154 a  154 (301)
                      .
T Consensus       178 ~  178 (190)
T 3o2u_A          178 S  178 (190)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.7e-34  Score=241.57  Aligned_cols=118  Identities=27%  Similarity=0.506  Sum_probs=110.2

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC
Q 022163            4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN   83 (301)
Q Consensus         4 ~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn   83 (301)
                      ++++|+. +.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||+
T Consensus        14 ~~~~~~~-~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   92 (136)
T 2h2y_A           14 TKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKP   92 (136)
T ss_dssp             SCCCTTS-HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC
T ss_pred             hhccchH-HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCC
Confidence            5677774 889999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             -c--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCC
Q 022163           84 -G--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN  126 (301)
Q Consensus        84 -~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~  126 (301)
                       +  ||+.+|+||+++|+   ++|+|+++|++||.+|++|| .+|+
T Consensus        93 ~~HPnv~~~G~ICl~iL~---~~WsP~~ti~~vL~si~sll-~~p~  134 (136)
T 2h2y_A           93 PKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIISML-SSAK  134 (136)
T ss_dssp             CCCTTBCTTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHH-SSSC
T ss_pred             CCCCcCCCCCEEECcccc---CCCCCCCcHHHHHHHHHHHH-hCcC
Confidence             5  68999999999997   89999999999999999999 4544

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=1.4e-34  Score=251.00  Aligned_cols=139  Identities=19%  Similarity=0.427  Sum_probs=123.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhCC------------CCCeEEecCCCCccEEEEEEeCCCCCCCC--CCeEEEEEEcCCCCC
Q 022163            6 YNLKNPAVKRILQEVKEMQSNP------------SDDFMSLPLEENIFEWQFAIRGPGDTEFE--GGIYHGRIQLPAEYP   71 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p------------~~gi~a~p~~dnl~~W~v~I~GP~~TpYe--GG~F~~~I~fP~dYP   71 (301)
                      ..|++.+.|||++|+++|++++            +.++++.+.++|+++|+++|.||++|||+  ||+|++.|.||++||
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            4688889999999999999977            67899999999999999999999999999  999999999999999


Q ss_pred             CCCCeeEEecCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHH-HHHHhCC---CCCCCchh--hhHhhHHhHHHHH
Q 022163           72 FKPPSFMLLTPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALV-ALIAFMP---TNPNGALG--SLDYKKEERRALA  143 (301)
Q Consensus        72 ~~PP~V~FlTPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~-~I~~lL~---~nP~~~l~--A~~~~~edr~~f~  143 (301)
                      ++||+|+|.||++  ||+.+|+||+++|+   ++|+|+++++++|. .|++|+.   .||+++++  |+.+|++|+++|.
T Consensus        83 ~~pP~v~f~t~i~HPnv~~~G~iCl~il~---~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~  159 (167)
T 4ds2_A           83 HEPPTVRFVTPVYSPLVTGEGGICDRMVN---DFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFA  159 (167)
T ss_dssp             TSCCEEEESSCCCCSSCCTTSCCCTHHHH---TTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHH
T ss_pred             CCCCEEEEeCCcccccCCCCCEEEcccCc---CCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHH
Confidence            9999999999987  68889999999997   89999999999754 5666664   26777776  6788999999999


Q ss_pred             HHHH
Q 022163          144 IKSR  147 (301)
Q Consensus       144 ~kar  147 (301)
                      ++||
T Consensus       160 ~~vr  163 (167)
T 4ds2_A          160 ARVR  163 (167)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9986

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=266.66  Aligned_cols=152  Identities=24%  Similarity=0.328  Sum_probs=133.7

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCC----eEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            5 RYNLKNPAVKRILQEVKEMQSNPSDD----FMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         5 ~~~ms~~a~kRL~kEl~~L~~~p~~g----i~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      .-+|+..+.+||++|+++|++++++|    +.+.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.
T Consensus        70 ~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            34688999999999999999988764    45677899999999999999999999999999999999999999999999


Q ss_pred             cC-----Cc--eecCCCcEEeccCCCC----CCCCCccc-cHHHHHHHHHHhCC-CCC--CCchhh----hHhhHHhHHH
Q 022163           81 TP-----NG--RFETQTKICLSISNHH----PEHWQPSW-SVRTALVALIAFMP-TNP--NGALGS----LDYKKEERRA  141 (301)
Q Consensus        81 TP-----n~--nv~~~G~IClsiL~~~----~e~WsP~~-tI~~IL~~I~~lL~-~nP--~~~l~A----~~~~~edr~~  141 (301)
                      ||     ++  ||+.+|+|||++|+.+    .+.|+|++ +|++||++|++||. .+|  +++++.    ..++.+|++.
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~  229 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE  229 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence            98     44  7888999999999742    26899999 89999999999995 344  666542    4678899999


Q ss_pred             HHHHHHHHHhhhCCh
Q 022163          142 LAIKSREAAPKFGTP  156 (301)
Q Consensus       142 f~~kare~~~kya~~  156 (301)
                      |.++||+|++||+..
T Consensus       230 Y~~~vr~~t~k~A~~  244 (323)
T 3ceg_A          230 YDGNIRQATVKWAML  244 (323)
T ss_dssp             HHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHhhH
Confidence            999999999999964

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-33  Score=237.33  Aligned_cols=113  Identities=26%  Similarity=0.539  Sum_probs=105.3

Q ss_pred             cCCCChHHHHHHHHHHHHHhhCCCCCeEEe--cCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163            5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSL--PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus         5 ~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~--p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      ..+|++.+ +||++|+++|++++++||++.  +.++|+++|+++|.||++||||||+|+++|.||++||++||+|+|.||
T Consensus        17 ~~~Ms~~~-~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           17 RGSMASMQ-KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             GGGGTTSC-HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             chhccHHH-HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            45677644 999999999999999999864  888999999999999999999999999999999999999999999998


Q ss_pred             Cc----eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           83 NG----RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        83 n~----nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      ++    ||+.+|+||+++|+   ++|+|+++|++||.+|++||
T Consensus        96 i~~~HPNV~~~G~ICL~iL~---~~WsP~~ti~~vL~sI~slL  135 (136)
T 2a7l_A           96 NIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML  135 (136)
T ss_dssp             CCCCBTTBCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHT
T ss_pred             CcCCCccCCCCCeEEchhcC---CCCCCCCcHHHHHHHHHHHh
Confidence            75    68889999999998   89999999999999999998

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.97  E-value=2.7e-32  Score=234.52  Aligned_cols=128  Identities=21%  Similarity=0.281  Sum_probs=110.9

Q ss_pred             CCCChHHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEec
Q 022163            6 YNLKNPAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~-p~~gi~a~p~~-d--nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      .....++.+||++|+++|+++ +++||++.+.. +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|+|
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t   95 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT   95 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence            345567999999999999998 78899998853 3  5999999999999999999999999999999999999999999


Q ss_pred             CCc--eecCCCcE---EeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHH
Q 022163           82 PNG--RFETQTKI---CLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE  137 (301)
Q Consensus        82 Pn~--nv~~~G~I---ClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~e  137 (301)
                      |++  ||+.+|+|   |+++|+    +|+|+++|++||.+|++||.+ ||+++++  |+.+|.+
T Consensus        96 ~i~HPNV~~~G~icisCL~iL~----~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~  155 (156)
T 2q0v_A           96 KIEMSCVDNCGRVIKNNLHILK----NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSN  155 (156)
T ss_dssp             CCCCTTBCTTSBBCGGGSHHHH----TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC--
T ss_pred             ccccCCCccCCeEehhhccccc----CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhh
Confidence            876  68899999   899996    499999999999999999965 6666665  4455544

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.97  E-value=4.8e-32  Score=233.92  Aligned_cols=123  Identities=25%  Similarity=0.328  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163            7 NLKNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus         7 ~ms~~a~kRL~kEl~~L~~~p~~g-i~a~p-~~dn--l~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      .+..++.+||++|+++|++++++| +.+.+ .++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|+||
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            456789999999999999999888 67766 4554  9999999999999999999999999999999999999999999


Q ss_pred             Cc--eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC--CCCCchh
Q 022163           83 NG--RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  130 (301)
Q Consensus        83 n~--nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~--nP~~~l~  130 (301)
                      ++  ||+ .+|+||+++|+.+ +.|+|+++|++||.+|++||.+  |++++++
T Consensus       101 i~HPNV~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n  152 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  152 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTCCCC
T ss_pred             ceeCCEECCCCEEehhhcCCc-cCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence            76  677 6899999999633 6799999999999999999964  5666665

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=7.7e-33  Score=244.22  Aligned_cols=118  Identities=12%  Similarity=0.361  Sum_probs=107.1

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCccEEEEEEeCC-CCCCCCC-----------CeEEEEEEcCC
Q 022163            4 DRYNLKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGP-GDTEFEG-----------GIYHGRIQLPA   68 (301)
Q Consensus         4 ~~~~ms~~a~kRL~kEl~~L~~~p---~~gi~a~p~~dnl~~W~v~I~GP-~~TpYeG-----------G~F~~~I~fP~   68 (301)
                      ....|+..+.+||++||++|++++   +.+|.+.|.++|+++|+++|.|| ++|||+|           |+|+|+|.||+
T Consensus        20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~   99 (186)
T 1zuo_A           20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   99 (186)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence            467899999999999999999988   68899999999999999999998 9999998           89999999999


Q ss_pred             CCCCCCCeeEEecCCc---eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC
Q 022163           69 EYPFKPPSFMLLTPNG---RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  123 (301)
Q Consensus        69 dYP~~PP~V~FlTPn~---nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~  123 (301)
                      +||++||+|+|.||++   ||+.+|.||+++|.  ++.|+|+++|++||.+|++||.+
T Consensus       100 ~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~--~~~WsP~~ti~~VL~sI~slL~~  155 (186)
T 1zuo_A          100 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVK  155 (186)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEeCCccCCCccCCCCcEEeccCC--CCCCCCcCcHHHHHHHHHHHHcC
Confidence            9999999999999998   37789999999996  36899999999999999999954

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.97  E-value=9.6e-32  Score=226.39  Aligned_cols=116  Identities=19%  Similarity=0.334  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHhhC-CCCCeEEecCC-C--CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--
Q 022163           11 PAVKRILQEVKEMQSN-PSDDFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--   84 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~-p~~gi~a~p~~-d--nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--   84 (301)
                      ++.+||++|+++|+++ +++|+++.+.. +  |+++|+++|.||++||||||+|+++|.||++||++||+|+|+||++  
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   85 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP   85 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence            6789999999999998 78899998853 3  5999999999999999999999999999999999999999999876  


Q ss_pred             eecCC-CcE--EeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh
Q 022163           85 RFETQ-TKI--CLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG  130 (301)
Q Consensus        85 nv~~~-G~I--ClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~  130 (301)
                      ||+.+ |+|  |+++|+    +|+|+++|++||.+|++||.+ ||+++++
T Consensus        86 nv~~~~G~i~~cL~~l~----~W~p~~~i~~vl~~i~~ll~~pn~~~p~~  131 (138)
T 1jat_B           86 CVNPTTGEVQTDFHTLR----DWKRAYTMETLLLDLRKEMATPANKKLRQ  131 (138)
T ss_dssp             TBCTTTCBBCTTSHHHH----TCCTTCCHHHHHHHHHHHHTSHHHHTSCC
T ss_pred             CEeCCCCEEeeecccCC----CCCCcCcHHHHHHHHHHHHcCCCCCCCCC
Confidence            67776 999  999984    799999999999999999965 5555544

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=232.65  Aligned_cols=121  Identities=26%  Similarity=0.328  Sum_probs=106.3

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCC-eEEec-CCCC--ccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            9 KNPAVKRILQEVKEMQSNPSDD-FMSLP-LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~g-i~a~p-~~dn--l~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      ..++.+||++|+++|++++++| +.+.+ .++|  +++|+++|.||++||||||+|+++|.||++||++||+|+|+||++
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            3568999999999999999888 56666 4554  999999999999999999999999999999999999999999976


Q ss_pred             --eec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC--CCCCchh
Q 022163           85 --RFE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  130 (301)
Q Consensus        85 --nv~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~--nP~~~l~  130 (301)
                        ||+ .+|+||+++|+.+ +.|+|+++|++||.+|++||.+  |++++++
T Consensus       113 HPNV~~~~G~ICl~iL~~~-~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n  162 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  162 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHH-HTCCSSCCHHHHHHHHHHHHHSTTTSSSCCC
T ss_pred             cCCEeCCCCEEEhhhcCCC-CCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence              577 6899999999633 6899999999999999999964  5566655

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.86  E-value=2.1e-23  Score=179.72  Aligned_cols=95  Identities=16%  Similarity=0.258  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCC----------eEEEEEEcCCCCCCCCCeeEEecC
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      .+||++|++.|++      ++.+..+|++.|+++|.||.+|+|+||          .|+++|.||++||++||+|+|.++
T Consensus        34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~  107 (172)
T 2z6o_A           34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL  107 (172)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred             HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence            9999999999999      467788899999999999999999999          999999999999999999999886


Q ss_pred             ---CceecCCCcEEeccCCCCCC---CCCccccHHHHHH
Q 022163           83 ---NGRFETQTKICLSISNHHPE---HWQPSWSVRTALV  115 (301)
Q Consensus        83 ---n~nv~~~G~IClsiL~~~~e---~WsP~~tI~~IL~  115 (301)
                         +.|+|.+|+|||++|.  ..   .|+|.++|.++|.
T Consensus       108 ~~~hpnmY~~G~ICLdIL~--kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          108 DGKTAKMYRGGKICLTDHF--KPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             TTTCSSBCTTSBBCCCTTH--HHHHHHHTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCcEechhhc--cccccccCCccCHHHHHh
Confidence               4478999999999993  13   3559999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.54  E-value=1.4e-14  Score=124.97  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhhCCC---CCeEEecCCCCccEEEEEEeCCCCCCCCCCe---EEEEEEcCCCCCCCCCeeEEecC-----
Q 022163           14 KRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLLTP-----   82 (301)
Q Consensus        14 kRL~kEl~~L~~~p~---~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~---F~~~I~fP~dYP~~PP~V~FlTP-----   82 (301)
                      +|..+|+..+.+.-+   +.......+|...++-+.+.|.-.++|+||.   |.+.|.||.+||++||.|.|.++     
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            566777777755321   1222334467777778888887779999999   88999999999999999977541     


Q ss_pred             -----Cc---eecCCCcEEeccCCCCCCCCCc-cccHHHHHHHHHHhCCC-CCC
Q 022163           83 -----NG---RFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPT-NPN  126 (301)
Q Consensus        83 -----n~---nv~~~G~IClsiL~~~~e~WsP-~~tI~~IL~~I~~lL~~-nP~  126 (301)
                           ++   ||+.+|+||+++|.    +|+| ..+|.++|.+|+++|.+ ||+
T Consensus       111 ~~~~~I~~hpnVD~~G~I~lpyL~----~W~p~~s~L~~ll~~l~~lf~ep~~d  160 (162)
T 3r3q_A          111 TISSSLPIQEYIDSNGWIALPILH----AWDPAAMNLIMVVQELMSLLHEPPQD  160 (162)
T ss_dssp             TSCTTSTHHHHBCTTSBBCCGGGG----SCCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred             ccccccCCCCCCCCCCcEeCcccc----cCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence                 33   78999999999994    6999 68999999999999955 554

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.51  E-value=1.7e-15  Score=128.05  Aligned_cols=87  Identities=20%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCC----------eEEEEEEcCCCCCCCCCeeEEe
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      .=..||+.||..|-+      ++....++-..|+..+.||.||+|+|+          .|++.|.||.+||++||.|+|.
T Consensus        34 ~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp  107 (168)
T 3kpa_A           34 KWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALP  107 (168)
T ss_dssp             HHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred             HHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecc
Confidence            357899999999976      233333344589999999999999999          9999999999999999999999


Q ss_pred             cC-Cc--eecCCCcEEeccCCCCCCCCCcccc
Q 022163           81 TP-NG--RFETQTKICLSISNHHPEHWQPSWS  109 (301)
Q Consensus        81 TP-n~--nv~~~G~IClsiL~~~~e~WsP~~t  109 (301)
                      ++ ..  ++|.+|+|||+++      |+|.|+
T Consensus       108 ~ldgkt~kmYr~GkICLdIh------wkPlW~  133 (168)
T 3kpa_A          108 ELEGKTVKMYRGGKICMTTH------FFPLWA  133 (168)
T ss_dssp             GGTTTCSSEETTTEECCCTT------HHHHHH
T ss_pred             cccCcCccccCCCcEEeccc------cchhhH
Confidence            85 33  6899999999974      888764

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.19  E-value=1.1e-11  Score=105.08  Aligned_cols=80  Identities=19%  Similarity=0.435  Sum_probs=69.7

Q ss_pred             CCCccEEEEEEeCCCCCCCCCCeEEE--EEEcCCCCCCCCCeeEEecC--------CceecCCCcEEeccCCCCCCCCCc
Q 022163           37 EENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLTP--------NGRFETQTKICLSISNHHPEHWQP  106 (301)
Q Consensus        37 ~dnl~~W~v~I~GP~~TpYeGG~F~~--~I~fP~dYP~~PP~V~FlTP--------n~nv~~~G~IClsiL~~~~e~WsP  106 (301)
                      ..+++.|.++|.    .+|+|+.|.+  .|.||.+||++||.| |.+|        +.||+.+|+||+++|.    +|++
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~----~W~~  120 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH----EWKH  120 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH----TCCT
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc----ccCC
Confidence            468999999997    7899999984  999999999999999 7765        3379999999999995    5987


Q ss_pred             -cccHHHHHHHHHHhCCCCC
Q 022163          107 -SWSVRTALVALIAFMPTNP  125 (301)
Q Consensus       107 -~~tI~~IL~~I~~lL~~nP  125 (301)
                       ..+|.+++..++..|.++|
T Consensus       121 ~~snL~~ll~~l~~~F~~ep  140 (146)
T 3obq_A          121 PQSDLLGLIQVMIVVFGDEP  140 (146)
T ss_dssp             TTCCHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHhhCC
Confidence             8999999999999985543

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.24  Score=40.08  Aligned_cols=79  Identities=16%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCC------CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCC
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLE------ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP   74 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~------dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~P   74 (301)
                      |..+...|. ....+...|+.-|+.--+..+...-..      +....+.+.|....+ .-..-.+.+.|.||.+||..|
T Consensus         1 m~~~~~~~~-~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~   78 (138)
T 2yz0_A            1 MSLSHLTLD-QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTA   78 (138)
T ss_dssp             CCCSSSCHH-HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSC
T ss_pred             CCccccCcc-chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCC
Confidence            444444333 234456788888876433334322111      124567778874322 111346789999999999999


Q ss_pred             CeeEEec
Q 022163           75 PSFMLLT   81 (301)
Q Consensus        75 P~V~FlT   81 (301)
                      |.|.+.+
T Consensus        79 P~i~l~~   85 (138)
T 2yz0_A           79 PEIEFKN   85 (138)
T ss_dssp             CEEEEEC
T ss_pred             CeEEEec
Confidence            9998764

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.01  E-value=0.23  Score=39.67  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEec
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      ...+...|+..|+.--+..+...  .+....+.+.|..-.+..-+.-.+.+.|.||.+||..||.+.+.+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45667889998886433445432  222356666665322222233468899999999999999997654

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=93.38  E-value=0.48  Score=37.70  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCC--CCccEEEEEEeCCCCCCCC--CCeEEEEEEcCCCCCCCCCeeEEec
Q 022163           15 RILQEVKEMQSNPSDDFMSLPLE--ENIFEWQFAIRGPGDTEFE--GGIYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus        15 RL~kEl~~L~~~p~~gi~a~p~~--dnl~~W~v~I~GP~~TpYe--GG~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      +...|+.-|+.--+..+......  .+...+.+.|..+.+..-+  .-.+.+.|.||.+||..+|.+.+.+
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            57789988886444445443221  2345566666533221111  2468899999999999999998764

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=90.65  E-value=1.4  Score=38.21  Aligned_cols=83  Identities=16%  Similarity=0.304  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecCCCcEE
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKIC   93 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~~G~IC   93 (301)
                      .+|.+|+..|-=+.     +.-.+.++....+.+..-.     |....++|.++.+||.++|.+...-|.. +       
T Consensus         4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~-~-------   65 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVP-F-------   65 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSC-C-------
T ss_pred             HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCC-c-------
Confidence            36888888884332     2223567888999998433     6778899999999999999887665652 1       


Q ss_pred             eccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           94 LSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        94 lsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                          .   -.|++..++.+++..++..|
T Consensus        66 ----~---~~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           66 ----C---ASWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             ----C---CCCCTTCCHHHHHHHHHHHH
T ss_pred             ----c---cccCCCccHHHHHHHHHHHH
Confidence                1   35999999999988877766

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=87.66  E-value=2.4  Score=33.87  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCC-----CccEEEEEEeCCCC-CCC-CCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGD-TEF-EGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~d-----nl~~W~v~I~GP~~-TpY-eGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      ...+...|+..|+.--+..+.......     ....+.+.|. |.+ .-- ..-.+.+.|.||.+||..+|.|.+.
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           11 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             hHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            445677888888764334444322111     1345666676 322 100 1236889999999999999999764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.54  E-value=0.9  Score=36.19  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhCCCC--CeEEec-CCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163           15 RILQEVKEMQSNPSD--DFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus        15 RL~kEl~~L~~~p~~--gi~a~p-~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      +...|+..|+.--+.  .+...- ...+...+.+.|...... =..-.+.+.|.||.+||..||.+.+.
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            566788888752211  232211 112345777777632210 01236899999999999999998644

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=83.00  E-value=1.6  Score=36.27  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCCCCCeeEEec
Q 022163           59 IYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus        59 ~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      .+.+.|.||.+||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            78999999999999999997554

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=80.67  E-value=2.1  Score=35.13  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCCCCCeeEEec
Q 022163           59 IYHGRIQLPAEYPFKPPSFMLLT   81 (301)
Q Consensus        59 ~F~~~I~fP~dYP~~PP~V~FlT   81 (301)
                      .+.+.|.||.+||..||.+.+..
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEEC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEc
Confidence            58899999999999999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-35
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-26
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	5e-26
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-25
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	6e-25
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	7e-25
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-24
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-24
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-24
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	7e-24
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-22
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	5e-22
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	6e-22
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	9e-22
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	1e-21
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-21
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-21
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	4e-21
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	5e-21
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	5e-21
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-21
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-20
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-20
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-20
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-19
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	1e-19
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	4e-19
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	8e-19
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	6e-18
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-17
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	7e-07

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-35
 Identities = 58/137 (42%), Positives = 87/137 (63%), Gaps = 1/137 (0%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A +R+ Q+   ++ +P     + PL  NI EW + +RGP  T +EGG YHG++  P E+P
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 61

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 131
           FKPPS  ++TPNGRF+  T++CLSI++ HP+ W P+WSV T L  L++FM       LGS
Sbjct: 62  FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 120

Query: 132 LDYKKEERRALAIKSRE 148
           ++     +R LA++S  
Sbjct: 121 IETSDFTKRQLAVQSLA 137

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 99.7 bits (248), Expect = 1e-26
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRI 64
           K P   R+L+E+++ +     +  S  L +     + +W   I GP  +  E  IY   I
Sbjct: 2   KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 61

Query: 65  QLPAEYPFKPPSFMLLTPNGRFETQT---KICLSISNHHPEHWQPSWSVRTALVALIAFM 121
                YP  PP    ++            ++      H    W+ ++++ T L+ L   M
Sbjct: 62  DCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF--HTLRDWKRAYTMETLLLDLRKEM 119

Query: 122 PTNPN 126
              P 
Sbjct: 120 -ATPA 123

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 5e-26
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           P   R+L+E++E Q    D  +S  LE+     +  W   I GP  T +E  IY  +I+ 
Sbjct: 5   PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 64

Query: 67  PAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTN 124
             +YP  PP    +T        +   +    +      WQ S+S++  L  L   M + 
Sbjct: 65  GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSK 124

Query: 125 PN 126
            N
Sbjct: 125 EN 126

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 97.1 bits (241), Expect = 2e-25
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           PA +R++++ K M+ +      + PL +N+  W   I GP DT +E G +   ++   EY
Sbjct: 3   PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 71  PFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL 129
           P KPP    L+            + +       W P++ V + L ++ +     NP    
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEICLDILQ-NRWTPTYDVASILTSIQSLFNDPNPASPA 121

Query: 130 GSLDYK--KEERRALAIKSREAAPK 152
                   K+ +     + +E   K
Sbjct: 122 NVEAATLFKDHKSQYVKRVKETVEK 146

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 95.6 bits (237), Expect = 6e-25
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
           +R+++E++E++     +F ++ + E N+  WQ  I  P +  ++ G +   I  PAEYPF
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60

Query: 73  KPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 128
           KPP     T         K  + +     E+W+P+      + +LIA +    P +P  A
Sbjct: 61  KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 120

Query: 129 LGSLDYKKEERRALAIKSREAAPKF 153
             + +Y K +R+     + E   K+
Sbjct: 121 DLAEEYSK-DRKKFCKNAEEFTKKY 144

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (234), Expect = 7e-25
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 12  AVKRILQEVKEMQSNPSDDFM--SLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             KR+ +E+  +Q++P          ++ +I +W   + G   T +EG  +    +  + 
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 70  YPFKPPSFMLLTP----NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           YPF  P  M        +    +   ICLSI     E W P+ SV++  +++I+ +
Sbjct: 64  YPFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 116

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 94.8 bits (235), Expect = 1e-24
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P+ +R++++ K++Q +P       P E+NI  W+  I GP +T FE G +   ++   EY
Sbjct: 3   PSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEY 62

Query: 71  PFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNG 127
           P KPP+   ++   +        ICL         W P++ V   L ++ + +   NPN 
Sbjct: 63  PNKPPTVKFISKMFHPNVYADGSICLD---ILQNRWSPTYDVAAILTSIQSLLDEPNPNS 119

Query: 128 ALGSLDYK--KEERRALAIKSRE 148
              SL  +  +E RR    + ++
Sbjct: 120 PANSLAAQLYQENRREYEKRVQQ 142

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 2e-24
 Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 14/124 (11%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
            + +++ E+  NP + F +  +++ +++ W+  I GP DT +EGG++   +  P +YP +
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62

Query: 74  PPSFMLLTP--NGRFETQTKICLSISNH----------HPEHWQPSWSVRTALVALIAFM 121
           PP    +T   +   +    +C+SI +             E W P  +V T ++++I+ +
Sbjct: 63  PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 122

Query: 122 PTNP 125
             +P
Sbjct: 123 -ADP 125

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 92.5 bits (229), Expect = 3e-24
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 15  RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
           RI +E+    +NP  +        NI  W     G  +T +   +Y  +I  P +YP KP
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 75  PSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 121
           P    L     +    +   ICLS+     + + PS S+   ++++I+ +
Sbjct: 62  PIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 108

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 92.5 bits (229), Expect = 7e-24
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 2/144 (1%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           A+KRI +E++++  +P     + P+ +++F WQ  I GP ++ ++GG++   I  P +YP
Sbjct: 2   ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61

Query: 72  FKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL 129
           FKPP     T   +    +   ICL I             V  ++ +L+     +     
Sbjct: 62  FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121

Query: 130 GSLDYKKEERRALAIKSREAAPKF 153
                 K +R      +RE   K+
Sbjct: 122 EIARIYKTDRERYNQLAREWTQKY 145

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 2e-22
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           A+ R+ QE K  + +    F+++P +      N+  W+ AI G   T +EGG++  R+  
Sbjct: 3   ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62

Query: 67  PAEYPFKPPSFMLLTPNGRFETQTKICLSISN-HHPEHWQPSWSVRTALVALIAFMPT-N 124
             +YP  PP      P           +S+S     + W+P+ +++  L+ +   +   N
Sbjct: 63  KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPN 122

Query: 125 PNGALGSLDYK--KEERRALAIKSREAAPKF 153
                 +  Y    + R     + R  A KF
Sbjct: 123 IQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 153

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 5e-22
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + + KRI +E+ E+  +P  +  + P  +NI+EW+  I GP  + +EGG++   I    +
Sbjct: 1   STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 60

Query: 70  YPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPN 126
           YPFKPP     T   +    +Q  ICL I     ++W P+ ++   L+++ + +   NP 
Sbjct: 61  YPFKPPKVTFRTRIYHCNINSQGVICLDI---LKDNWSPALTISKVLLSICSLLTDCNPA 117

Query: 127 GALGSLDYK--KEERRALAIKSREAAPKFGT 155
             L           R      +R+   ++ T
Sbjct: 118 DPLVGSIATQYMTNRAEHDRMARQWTKRYAT 148

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 87.9 bits (217), Expect = 6e-22
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           +   + +++ +M+  P D F +  +++ +I++W+  + GP DT +EGG +   +  P +Y
Sbjct: 1   SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 71  PFKPPSFMLLTPNGRFETQTKICLSISNHHPEH------------WQPSWSVRTALVALI 118
           P KPP    ++         +  + IS  H               W P  +V T L+++I
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120

Query: 119 AFMPTNPN---------GALGSLDYKKEERRA 141
           + + T+PN           +   +Y + +++ 
Sbjct: 121 SML-TDPNFESPANVDAAKMQRENYAEFKKKV 151

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 87.1 bits (215), Expect = 9e-22
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
             A   + ++  +++ N      + P+ E++ EW+  I G  ++ ++G ++   I   +E
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSE 62

Query: 70  YPFKPPSFMLLTPNGRFETQTKICLSISN--HHPEHWQPSWSVRTALVALIAFMPTNPN 126
           Y + PP    +T                +   +PE W  ++++ + L+AL   + +NP 
Sbjct: 63  YNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVML-SNPV 120

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 87.1 bits (215), Expect = 1e-21
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 9   KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
           ++   KR+ QE++ +  +      + P  +N+F+W   + GP DT +E   Y   ++ P+
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 69  EYPFKPPSFMLLT--PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           +YP+KPP     T   +   +    ICL       E+W  S+ VRT L++L + +   PN
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQSGNICLD---ILKENWTASYDVRTILLSLQSLL-GEPN 122

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 86.4 bits (213), Expect = 2e-21
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 12  AVKRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
             KRI++E++ ++ +P+    +    E +I   +    GP  T +EGG +   I++P EY
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 71  PFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL 129
           PFKPP     T        +       +     W P  ++++AL++L A + +  PN   
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 121

Query: 130 GSLDYK--KEERRALAIKSREAAPKFGT 155
            +   +    +R +    +      + +
Sbjct: 122 DAEVAQHYLRDRESFNKTAALWTRLYAS 149

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 2e-21
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
              R+ +E+  + + P         ++ + + +  I G  +T +E G++   + +P  YP
Sbjct: 3   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 72  FKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQ-PSWSVRTALVALIAFMPT-NPNG 127
           F+PP    LTP  +   ++  +ICL +    P+    PS ++ T L ++   M   NP+ 
Sbjct: 63  FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDD 122

Query: 128 ALGSLDYK--KEERRALAIKSREAAPKFGTPE 157
            L +      K  + A    +R+   K    +
Sbjct: 123 PLMADISSEFKYNKPAFLKNARQWTEKHARQK 154

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 85.2 bits (210), Expect = 4e-21
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 11  PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           P  KR+ QE+  +  +      + P  +N+F+W   I G   T +E   Y   ++ P+ Y
Sbjct: 1   PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 71  PFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           P+  P+   LTP       T+  +S+     E W   + VRT L+++ + +   PN
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLD-ILKEKWSALYDVRTILLSIQSLL-GEPN 114

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.3 bits (210), Expect = 5e-21
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           N AV+RI +E KE+  +       +    ++EN  E +  I GP DT +EGG Y   I++
Sbjct: 3   NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 62

Query: 67  PAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           P  YPF PP    +T        +       +   + W  + ++RT L++L A +     
Sbjct: 63  PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL-AAAE 121

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 84.8 bits (209), Expect = 8e-21
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           KRI++E +++ S+P     + P ++N+  +Q  I GP  + +E GI+   + LP +YP +
Sbjct: 6   KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 74  PPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGSL 132
            P    LT                +    +W P+  +RT L+++ A + + NPN  L + 
Sbjct: 66  APKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124

Query: 133 DYK--KEERRALAIKSREAAPKFGTPE 157
             +   +  +    K+RE    +   +
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAKKK 151

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 1e-20
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 4/151 (2%)

Query: 7   NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
           NL    ++ + +EV  + ++P D     P EE++ + Q  I GP  T + GG++  ++ L
Sbjct: 2   NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61

Query: 67  PAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NP 125
             ++P  PP    LT            + ++      W     +R  L+ +   +   NP
Sbjct: 62  GKDFPASPPKGYFLTKIFHPNVGANGEICVN-VLKRDWTAELGIRHVLLTIKCLLIHPNP 120

Query: 126 NGALGSLDYK--KEERRALAIKSREAAPKFG 154
             AL     +   E     A ++R      G
Sbjct: 121 ESALNEEAGRLLLENYEEYAARARLLTEIHG 151

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 3e-20
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 7/127 (5%)

Query: 5   RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG-- 62
           +Y  ++    R    V  +  +      S    +        + G     + G  Y+   
Sbjct: 12  KYKYRD-LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPI 70

Query: 63  RIQLPAEYPFKPPS-FMLLTPNGRFETQTKICLSISNHHP---EHWQPSWSVRTALVALI 118
            + L   YP+ PP  F+  T +   +T   +  +   + P   E   P   +   +  +I
Sbjct: 71  CLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMI 130

Query: 119 AFMPTNP 125
                 P
Sbjct: 131 VVFGDEP 137

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 82.2 bits (202), Expect = 8e-20
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
             A KR+L+E++++  +     ++ P  E NIF W   I+GP DT +  G+++ +++ P 
Sbjct: 2   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 61

Query: 69  EYPFKPPSFMLLTP--NGRFETQTKICLSI----------SNHHPEHWQPSWSVRTALVA 116
           +YP  PP         +       ++C+SI               E W P  SV   L++
Sbjct: 62  DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121

Query: 117 LIAFMPTNPN---------GALGSLDYKKEERRA 141
           +++ + + PN           L   +  + ER+ 
Sbjct: 122 VMSML-SEPNIESGANIDACILWRDNRPEFERQV 154

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 82.2 bits (202), Expect = 1e-19
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 14  KRILQEVKEMQ-------------SNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
            R+L+E+ ++Q              + S    +  +  +I  W+  I GP  T +EGG +
Sbjct: 4   ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63

Query: 61  HGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAF 120
              I +P +YP+ PP    +T        ++      +     W P+ ++RTAL+++ A 
Sbjct: 64  TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 123

Query: 121 MPTNPN 126
           +  +P 
Sbjct: 124 L-ADPV 128

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 81.7 bits (201), Expect = 1e-19
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 18/158 (11%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
           + +R   +   + ++    + S    + + E+    +GP  T +E G +   +QLP++YP
Sbjct: 1   SNRRREMDYMRLCNSTRKVYPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 56

Query: 72  FKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN----- 126
           FK PS              +      +   + W P + +       +  +   PN     
Sbjct: 57  FKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPL 116

Query: 127 ----GALGSLDYKKEERRALAIKSREAAPKFGTPERQK 160
                 L   D    +        RE      TP++  
Sbjct: 117 NVQAAHLLHADRVGFDALL-----REHVSTHATPQKAL 149

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 4e-19
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 14  KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
           +RI++E + + + P     + P E N   +   I GP D+ FEGG +   + LP EYP  
Sbjct: 5   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 74  PPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
            P    +T   +   +   +ICL I     + W P+  +RT L+++ A + + PN
Sbjct: 65  APKVRFMTKIYHPNVDKLGRICLDI---LKDKWSPALQIRTVLLSIQALL-SAPN 115

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 8e-19
 Identities = 16/152 (10%), Positives = 51/152 (33%), Gaps = 23/152 (15%)

Query: 11  PAVKRILQEVKEMQSNPSDD---FMSLPLEENIFEWQFAIRG-PGDTEFEGGI------- 59
            A  R+++E++++  + S     +    + +++++W   ++    D+     +       
Sbjct: 4   QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKE 63

Query: 60  ----YHGRIQLPAEYPFKPPSFMLLT---PNGRFETQTKICLSISNHHPEHWQPSWSVRT 112
                         +PF PP   ++      G       +C+ +     + W  ++S+ +
Sbjct: 64  GIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMEL--LTKQGWSSAYSIES 121

Query: 113 ALVALIAFM---PTNPNGALGSLDYKKEERRA 141
            ++ + A +               Y     + 
Sbjct: 122 VIMQINATLVKGKARVQFGANKNQYNLARAQQ 153

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 6e-18
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 10  NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
           + A  RI +++ E+    + D  S    +++  ++  I  P +  ++ G +    ++   
Sbjct: 2   SAAQLRIQKDINELNLPKTCDI-SFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 59

Query: 70  YPFKPPSFMLLT--PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           YP  PP     T   +   + +  +CL+I     E W+P  ++ + +  L       PN
Sbjct: 60  YPHDPPKVKCETMVYHPNIDLEGNVCLNI---LREDWKPVLTINSIIYGLQYLF-LEPN 114

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 4e-17
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 12  AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
           A  R+++E++++Q  P     +L  ++ N+  W   +  P    +    ++ RI  P EY
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEY 59

Query: 71  PFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 126
           PFKPP     T            + +     E+W+P       L AL   +   PN
Sbjct: 60  PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLV-NRPN 114

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 23/130 (17%)

Query: 13  VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG---RIQLPAE 69
              +L     ++  P     +    +   +   +I G   T  +G   H     + +P+ 
Sbjct: 28  SLALLDNFHSLR--PRTRVFTHS--DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSM 83

Query: 70  YPFKPPSFMLLTPNGRFETQT-------------KICLSISNHHPEHWQPSWSVRTALVA 116
           YP KPP   +   N    T +              I L I +        + ++   +  
Sbjct: 84  YPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH---CWDPAAMNLIMVVQE 140

Query: 117 LIAFMPTNPN 126
           L++ +   P 
Sbjct: 141 LMSLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.98
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.98
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.95
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.68
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.56
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.04
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	94.17

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=272.33  Aligned_cols=143  Identities=27%  Similarity=0.560  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      +++.|||++|+++|+++++.||++.+.++|++.|+++|.||.+|||+||+|++.|.||++||++||+|+|+|+++  ||+
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            368999999999999999999999999999999999999999999999999999999999999999999999876  688


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      .+|.||+++|.   +.|+|.+++.+||.+|+.+|.+ |++++++  |+.++++|+++|.++||+|++|||+
T Consensus        81 ~~G~iCl~~l~---~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          81 SQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             TTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEecC---CcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            89999999997   8899999999999999999965 6777776  5788899999999999999999985

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=5.5e-39  Score=272.54  Aligned_cols=146  Identities=24%  Similarity=0.474  Sum_probs=136.7

Q ss_pred             CCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163            6 YNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus         6 ~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      .||+..++|||++|+++|++++++||++.|.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.||++ 
T Consensus         1 ~~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (151)
T d1zdna1           1 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   80 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCC
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             -eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           85 -RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        85 -nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                       ||+.+|.||++++.   +.|+|+++|++||.+|+++|.+ |++++++  |++++++|++.|.++||+||++|+
T Consensus        81 PnI~~~G~ic~~~l~---~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          81 PNVGANGEICVNVLK---RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             TTBCTTSBBCHHHHT---TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ceecCCCCccccccc---ccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence             68889999999997   8999999999999999999954 5566665  578889999999999999999985

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=270.34  Aligned_cols=146  Identities=23%  Similarity=0.465  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      ++.+||++|+++|++++++||++.|.++|+++|+++|.||+||||+||+|+|.|.||++||++||+|+|+||++  ||+.
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~   81 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999976  6889


Q ss_pred             CCcEEeccCCCCC-CCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           89 QTKICLSISNHHP-EHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        89 ~G~IClsiL~~~~-e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      +|+||+++|+.+. +.|+|++++++||.+|++||.+ +++++++  |+.++.+|++.|.++||+|++|||..
T Consensus        82 ~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          82 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            9999999998643 5799999999999999999964 6677765  57888999999999999999999964

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1e-38  Score=268.59  Aligned_cols=140  Identities=28%  Similarity=0.625  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ   89 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~   89 (301)
                      |+|||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+++  ||+.+
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   81 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN   81 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999865  68899


Q ss_pred             CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           90 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        90 G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya  154 (301)
                      |+||+++|+   +.|+|++++.+||.+|+++|.+ +++++++  |+.++.+|+++|+++||+|++|||
T Consensus        82 G~iCl~~l~---~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          82 GSICLDILR---SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             CBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCEeeehhc---ccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999998   7899999999999999999965 6666665  568889999999999999999998

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3e-38  Score=266.96  Aligned_cols=142  Identities=26%  Similarity=0.581  Sum_probs=132.2

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      |.+|.|||++|+++|+++++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+|+++  ||
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI   80 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV   80 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeE
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999865  78


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhh
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  153 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~ky  153 (301)
                      +.+|.||+++|+   +.|+|+++|.+||.+|+++|.+ ++++++|  |+.++++|+++|+++||+||+|.
T Consensus        81 ~~~G~iCl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          81 YADGSICLDILQ---NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             CTTCBBCCGGGT---TSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEecccc---ccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999997   7899999999999999999964 6667765  67889999999999999999873

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=2.8e-38  Score=267.53  Aligned_cols=144  Identities=25%  Similarity=0.524  Sum_probs=134.1

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      |.+|.|||++|+++|+++++.||++.|.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|.|+++  ||
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI   80 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV   80 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999999876  58


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +.+|.||+++|.   +.|+|.++|++||.+|++||.+ +++++++  |+.++++|+++|.++||+|++|+..
T Consensus        81 ~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~  149 (153)
T d1ayza_          81 YANGEICLDILQ---NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE  149 (153)
T ss_dssp             CTTSBBCCGGGT---TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccccc---ccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999997   8999999999999999999965 5666665  6788999999999999999998753

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=266.86  Aligned_cols=140  Identities=26%  Similarity=0.518  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT   90 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G   90 (301)
                      .|||++|+++|+++++.||++.|.++|+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|.|+++  ||+.+|
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G   83 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG   83 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCC
Confidence            489999999999999999999999999999999999999999999999999999999999999999999876  688899


Q ss_pred             cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +||+++|.   +.|+|.+++.+||.+|++||.+ +++++++  |++++++|+++|.++||+|++|||.
T Consensus        84 ~icl~~l~---~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          84 RICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             BBCCGGGT---TSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             cEehHHhc---CCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            99999997   8899999999999999999954 6677766  6788899999999999999999985

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.3e-38  Score=270.31  Aligned_cols=144  Identities=26%  Similarity=0.539  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eec
Q 022163           10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFE   87 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~   87 (301)
                      .++.|||++|+++|++++++||++.|.++|+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|+|+++  ||+
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   81 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   81 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCC
Confidence            346789999999999999999999999999999999999999999999999999999999999999999999876  688


Q ss_pred             CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           88 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        88 ~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      .+|.||++++.   +.|+|.++|.+||.+|++||.+ |++++++  |+++|.+|++.|.++||+|++|||..
T Consensus        82 ~~G~icl~~~~---~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          82 RLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             TTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCCCeeecccc---ccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence            89999999998   7899999999999999999965 6667765  67888999999999999999999864

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-38  Score=267.10  Aligned_cols=145  Identities=29%  Similarity=0.504  Sum_probs=133.8

Q ss_pred             CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc
Q 022163            8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG   84 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p---~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~   84 (301)
                      |++.+.+||++|+++|++++   ..+|.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            88999999999999998763   578999999999999999999999999999999999999999999999999999876


Q ss_pred             --eecC-CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           85 --RFET-QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        85 --nv~~-~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                        ||+. +|.||++++.   +.|+|+++|++||.+|+++|.+ |++++++  |+.+|++|++.|.++||+||+|||+
T Consensus        81 Hpni~~~~g~ic~~~~~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1          81 HPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             BTTBCTTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCeeCCCCcccccccc---ccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence              5775 7999999997   8999999999999999999964 6677765  6788999999999999999999995

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=268.22  Aligned_cols=144  Identities=24%  Similarity=0.456  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCC-----CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~d-----nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      .|++||++|+++|+++++.||++.|.++     |+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.||++ 
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            4899999999999999999999999865     9999999999999999999999999999999999999999999865 


Q ss_pred             -eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           85 -RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        85 -nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                       ||+.+|.||+++|.. .++|+|+++|.+||.+|+++|.+ +++++++  |+.++.+|+++|.++||+|++|||.
T Consensus        82 PnV~~~G~icl~~l~~-~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          82 PNVYPSGTVSLSILEE-DKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             TTBCTTSBBCCGGGCT-TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             ccccccceeeecccCc-ccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence             688999999999963 25899999999999999999954 6667665  6788899999999999999999996

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1.2e-37  Score=266.87  Aligned_cols=147  Identities=23%  Similarity=0.502  Sum_probs=133.3

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      |..|.|||++|+++|++++++||++.|. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|+++  |
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceece
Confidence            4679999999999999999999999985 679999999999999999999999999999999999999999999875  6


Q ss_pred             ecCCCcEEeccCCCC----------CCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           86 FETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        86 v~~~G~IClsiL~~~----------~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      |+.+|+||+++|+..          ++.|+|+++|++||.+|+.+|.+ |++++++  |+.+|++|+++|.++||++++|
T Consensus        81 v~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k  160 (164)
T d2ucza_          81 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            888999999999642          46799999999999999999965 6667766  6788899999999999999998


Q ss_pred             hCC
Q 022163          153 FGT  155 (301)
Q Consensus       153 ya~  155 (301)
                      +.+
T Consensus       161 ~~~  163 (164)
T d2ucza_         161 SLG  163 (164)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            753

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=7.6e-38  Score=264.08  Aligned_cols=141  Identities=27%  Similarity=0.472  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      ++.|||++|+++|++++++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|+||++  ||+.
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT   80 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999876  6889


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      +|+||+++|.   +.|+|+++|++||.+|+++|.+ +++++++  |++++ +|+++|.++++++++||++
T Consensus        81 ~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~-~n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          81 QGNISLDILK---EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             TCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred             CCcccccccc---ccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh-hCHHHHHHHHHHHHHccCC
Confidence            9999999997   8999999999999999999965 6677765  56788 5999999999999999985

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=5.8e-37  Score=258.83  Aligned_cols=141  Identities=26%  Similarity=0.483  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec-CCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLP-LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p-~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      +.|||++|+++|++++++||++.+ .++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|+|+++  ||+.
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            689999999999999999999975 5679999999999999999999999999999999999999999999876  5665


Q ss_pred             -CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           89 -QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        89 -~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                       +|.+|++++.   +.|+|+++|++||.+|+++|.+ |++++++  |+++|++|+++|.++||+|++|||+
T Consensus        82 ~~~~~~~~~~~---~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          82 VTGAICLDILK---NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             TTCCBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             Ccceeechhhc---ccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence             6789999887   8999999999999999999964 6678776  5788899999999999999999985

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.6e-36  Score=258.64  Aligned_cols=146  Identities=27%  Similarity=0.512  Sum_probs=130.8

Q ss_pred             CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEe
Q 022163            1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL   80 (301)
Q Consensus         1 ma~~~~~ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~Fl   80 (301)
                      |+..+...+  +.|||++|+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+
T Consensus         1 m~~~~~~~~--~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~   78 (156)
T d2e2ca_           1 MTTSKERHS--VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT   78 (156)
T ss_dssp             CCCCCSCCC--HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CCCCcccch--HHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecc
Confidence            665555544  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc--eecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           81 TPNG--RFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        81 TPn~--nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      |+++  ||+.+|.||+++|.   +.|+|.++|++||.+|++||.+ ++++++|  |+++|+ ++.+|.+++++.+.+
T Consensus        79 t~i~Hpnv~~~G~icl~~l~---~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~  151 (156)
T d2e2ca_          79 TPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKT  151 (156)
T ss_dssp             SCCCBTTBCTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             ccCcCCCCCCCCCccccccC---CCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHH
Confidence            9876  68899999999997   8899999999999999999964 6677776  467775 667899999988765

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=257.29  Aligned_cols=142  Identities=25%  Similarity=0.472  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET   88 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~   88 (301)
                      |.+||++|+++|++++++||.+.+. ++|++.|++.| ||++|||+||+|+|+|.||++||++||+|+|.||++  ||+.
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            4789999999999999999999887 46899999866 899999999999999999999999999999999976  6889


Q ss_pred             CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCCh
Q 022163           89 QTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP  156 (301)
Q Consensus        89 ~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~  156 (301)
                      +|.||+++|.  +++|+|.++|.+||.+|+.+|.+ +++++++  |+.++.+|+++|.++||+|++|||..
T Consensus        80 ~G~icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          80 NGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             TCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCccccccc--ccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            9999999996  37899999999999999999964 6677765  57888999999999999999999964

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=257.79  Aligned_cols=144  Identities=38%  Similarity=0.801  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCceecCCC
Q 022163           11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQT   90 (301)
Q Consensus        11 ~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~nv~~~G   90 (301)
                      +|.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.||++|++.+|
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCc-h----hhhHhhHHhHHHHHHHHHHHHhhhC
Q 022163           91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA-L----GSLDYKKEERRALAIKSREAAPKFG  154 (301)
Q Consensus        91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~-l----~A~~~~~edr~~f~~kare~~~kya  154 (301)
                      ++|+.+++.++++|+|+++|++||.+|++||.+ ||+.. .    .+...+..+...|..++++++++|.
T Consensus        81 ~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          81 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             CBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877778999999999999999999964 66432 1    1234556677888888888887774

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=3.7e-36  Score=257.67  Aligned_cols=141  Identities=25%  Similarity=0.493  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhh-------------CCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeE
Q 022163           12 AVKRILQEVKEMQS-------------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM   78 (301)
Q Consensus        12 a~kRL~kEl~~L~~-------------~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~   78 (301)
                      ..+||+||+++|++             ++..|+.+.+.++|+++|+++|.||.||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999976             34568999999999999999999999999999999999999999999999999


Q ss_pred             EecCCce--e-cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhh
Q 022163           79 LLTPNGR--F-ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK  152 (301)
Q Consensus        79 FlTPn~n--v-~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~k  152 (301)
                      |+||++|  + +.+|.||++++.   +.|+|+++|.+||.+|+.+|.+ +|+++++  |+.++.+|+++|.++||+||+|
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~---~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~  158 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILK---HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET  158 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCceECCCCCeecCccc---ccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9998774  4 447999999997   7899999999999999999964 6777776  5688899999999999999999


Q ss_pred             hCC
Q 022163          153 FGT  155 (301)
Q Consensus       153 ya~  155 (301)
                      ||.
T Consensus       159 ~a~  161 (161)
T d2f4za1         159 FAK  161 (161)
T ss_dssp             HCC
T ss_pred             HhC
Confidence            984

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=256.97  Aligned_cols=141  Identities=16%  Similarity=0.396  Sum_probs=129.2

Q ss_pred             CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--e
Q 022163            8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--R   85 (301)
Q Consensus         8 ms~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--n   85 (301)
                      |++.|.+||+||+++|++++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++  |
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   80 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN   80 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999876  5


Q ss_pred             ec-CCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHH
Q 022163           86 FE-TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREA  149 (301)
Q Consensus        86 v~-~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~  149 (301)
                      |+ .+|+||+++|+. +++|+|.++|++||.+|+++|.+ +++++++  |+++|++|+++|.++||++
T Consensus        81 V~~~~G~iC~~~l~~-~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          81 VDPHTGQPCIDFLDN-PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             BCTTTCCBCCHHHHC-GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             eecCcccccccccCc-hhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            77 479999999962 36899999999999999999954 5566666  5788999999999999875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=6.7e-36  Score=255.41  Aligned_cols=143  Identities=22%  Similarity=0.523  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCC-CCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCC
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQ   89 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~-dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~   89 (301)
                      ..||+||+++|++++++||++.|.+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+++  ||+.+
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~   81 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE   81 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCC
Confidence            4699999999999999999999864 68999999999999999999999999999999999999999999976  68889


Q ss_pred             CcEEeccCCCC----------CCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCC
Q 022163           90 TKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT  155 (301)
Q Consensus        90 G~IClsiL~~~----------~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~  155 (301)
                      |.||+++|...          .+.|+|+++|++||.+|+++|.+ +++++++  |++++++|+++|.++|++|++|+..
T Consensus        82 G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~e  160 (161)
T d1pzva_          82 GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE  160 (161)
T ss_dssp             SBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             CccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999642          13699999999999999999965 6667765  6788899999999999999998753

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=254.55  Aligned_cols=137  Identities=26%  Similarity=0.580  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT   90 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G   90 (301)
                      |||++|+++|+++++.|+.+.+. ++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|+||++  ||+.+|
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   80 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG   80 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCC
Confidence            79999999999999999987775 67999999999 999999999999999999999999999999999865  688999


Q ss_pred             cEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhh
Q 022163           91 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  153 (301)
Q Consensus        91 ~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~ky  153 (301)
                      .||+++|+  .+.|+|.+++.+||.+|+++|.+ +++++++  |+.++.+|++.|.++||+|++||
T Consensus        81 ~icl~~l~--~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          81 QVCLPVIS--AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             BBCCTTTS--SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             cccccccc--CCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998  36899999999999999999954 6667665  56888999999999999999987

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=241.13  Aligned_cols=140  Identities=18%  Similarity=0.376  Sum_probs=123.6

Q ss_pred             ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--ee
Q 022163            9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RF   86 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv   86 (301)
                      |+.|.+||++|+++|++.+..++. .+.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+++  ||
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~-~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv   78 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   78 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEE-CSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEE-EcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccc
Confidence            467999999999999865543332 45678999999999 899999999999999999999999999999999877  68


Q ss_pred             cCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhh
Q 022163           87 ETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKF  153 (301)
Q Consensus        87 ~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~ky  153 (301)
                      +.+|.||++++.   ++|+|+++|++||.+|+++|.+ |++++++  |++++++|+++|.++||+|++..
T Consensus        79 ~~~G~ic~~~~~---~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1          79 DLEGNVCLNILR---EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             CTTCBBCCGGGT---TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred             cccceeeeeecc---cCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence            889999999987   8899999999999999999965 6677776  67889999999999999998743

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=227.71  Aligned_cols=107  Identities=26%  Similarity=0.561  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEec--CCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC----ce
Q 022163           12 AVKRILQEVKEMQSNPSDDFMSLP--LEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN----GR   85 (301)
Q Consensus        12 a~kRL~kEl~~L~~~p~~gi~a~p--~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn----~n   85 (301)
                      +.|||++|+++|++++++|+.+.+  .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|+|++    +|
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpn   83 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH   83 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCcccccc
Confidence            469999999999999999998765  467999999999999999999999999999999999999999999975    37


Q ss_pred             ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           86 FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        86 v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      |+.+|+||+++|+   ++|+|+++|++||.+|++||
T Consensus        84 v~~~G~iCl~~l~---~~Wsp~~ti~~vl~~i~~lL  116 (117)
T d2a7la1          84 VYSNGHICLSILT---EDWSPALSVQSVCLSIISML  116 (117)
T ss_dssp             BCTTCBBCCGGGT---TTCCTTSCHHHHHHHHHHHT
T ss_pred             CcCCCeEEeecCc---CCCCCcCcHHHHHHHHHHHh
Confidence            8889999999998   88999999999999999998

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.98  E-value=2e-32  Score=220.16  Aligned_cols=104  Identities=26%  Similarity=0.506  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCC---ceecCCCc
Q 022163           15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPN---GRFETQTK   91 (301)
Q Consensus        15 RL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn---~nv~~~G~   91 (301)
                      ||+||+++|++++++||.+.+.++|+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++   .|++.+|+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999964   36899999


Q ss_pred             EEeccCCCCCCCCCccccHHHHHHHHHHhC
Q 022163           92 ICLSISNHHPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        92 IClsiL~~~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      ||+++|+   ++|+|++++++||.+|++||
T Consensus        82 iCl~il~---~~Wsp~~ti~~vl~~i~~ll  108 (109)
T d2fo3a1          82 ICLSLLG---DDYNPSLSISGLVLSIISML  108 (109)
T ss_dssp             BCCGGGT---TTCCTTCCHHHHHHHHHHHH
T ss_pred             EEeeccc---CCCCccCCHHHHHHHHHHHh
Confidence            9999998   89999999999999999988

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.98  E-value=9.7e-33  Score=235.63  Aligned_cols=139  Identities=22%  Similarity=0.461  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecC-C
Q 022163           13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFET-Q   89 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~-~   89 (301)
                      .|||++|+++|.+++..   +.|. ||+++|++.|.||++|||+||+|+++|.||++||++||+|+|.|+++  ||+. +
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~~-d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~   77 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS   77 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEEC-SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTT
T ss_pred             chHHHHHHHHHhcCCCc---CCCC-CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCc
Confidence            58999999999987754   5554 79999999999999999999999999999999999999999999876  5655 7


Q ss_pred             CcEEeccCCCCCCCCCccccHHHHHHHH-HHhCCC-CCCCchh--hhHhhHHhHHHHHHHHHHHHhhhCChhH
Q 022163           90 TKICLSISNHHPEHWQPSWSVRTALVAL-IAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER  158 (301)
Q Consensus        90 G~IClsiL~~~~e~WsP~~tI~~IL~~I-~~lL~~-nP~~~l~--A~~~~~edr~~f~~kare~~~kya~~~r  158 (301)
                      |.||+++|.   ++|+|.+++.++|..+ +.||.+ |++++++  |+++|.+|++.|.++||+|++|||...+
T Consensus        78 G~vcl~il~---~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~~~  147 (158)
T d1yf9a1          78 GSVCLDVIN---QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQK  147 (158)
T ss_dssp             CBBCHHHHH---HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHH
T ss_pred             ccccccccc---cccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCChhh
Confidence            999999997   7899999999999764 455543 5566665  6788999999999999999999998764

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.97  E-value=6.5e-32  Score=221.78  Aligned_cols=108  Identities=26%  Similarity=0.696  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEecC-CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc--eecCCC
Q 022163           14 KRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG--RFETQT   90 (301)
Q Consensus        14 kRL~kEl~~L~~~p~~gi~a~p~-~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~--nv~~~G   90 (301)
                      -||+||+++|++++++||.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.||++  ||+.+|
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            48999999999999999999875 568999999999999999999999999999999999999999999865  689999


Q ss_pred             cEEeccCCC----------CCCCCCccccHHHHHHHHHHhC
Q 022163           91 KICLSISNH----------HPEHWQPSWSVRTALVALIAFM  121 (301)
Q Consensus        91 ~IClsiL~~----------~~e~WsP~~tI~~IL~~I~~lL  121 (301)
                      +||+++|+.          +.++|+|++++++||++|++||
T Consensus        82 ~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll  122 (125)
T d2awfa1          82 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  122 (125)
T ss_dssp             BBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             EEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHh
Confidence            999999953          2367999999999999999999

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-31  Score=224.39  Aligned_cols=137  Identities=11%  Similarity=0.353  Sum_probs=114.9

Q ss_pred             ChHHHHHHHHHHHHHhhCCC--CC-eEEecCCCCccEEEEEEeC-CCCCCCCCCe-----------EEEEEEcCCCCCCC
Q 022163            9 KNPAVKRILQEVKEMQSNPS--DD-FMSLPLEENIFEWQFAIRG-PGDTEFEGGI-----------YHGRIQLPAEYPFK   73 (301)
Q Consensus         9 s~~a~kRL~kEl~~L~~~p~--~g-i~a~p~~dnl~~W~v~I~G-P~~TpYeGG~-----------F~~~I~fP~dYP~~   73 (301)
                      |.+|.+||+|||++|++++.  .| +.+.+.++|+++|++.|.| |++|||+||.           |+++|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            67899999999999998764  34 4567778999999999999 8999999986           99999999999999


Q ss_pred             CCeeEEecCCce---ecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC-CCCCch--h--hhHhhHHhHHHHHHH
Q 022163           74 PPSFMLLTPNGR---FETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGAL--G--SLDYKKEERRALAIK  145 (301)
Q Consensus        74 PP~V~FlTPn~n---v~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~-nP~~~l--~--A~~~~~edr~~f~~k  145 (301)
                      ||+|+|+||++|   ++.+|.||+++|.  .++|+|+++|++||.+|+++|.+ +|+.+.  +  ++.+ .++++.|++.
T Consensus        82 PP~v~f~t~i~hpn~~~~~G~iCl~iL~--~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~  158 (162)
T d1zuoa1          82 PPFVRVVLPVLSGGYVLGGGALCMELLT--KQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSI  158 (162)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGS--TTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHH
T ss_pred             cceEEEEEEeeccccccCCceeeccccc--CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHH
Confidence            999999999763   5678999999996  36799999999999999999854 553222  2  2343 4678889998


Q ss_pred             HHH
Q 022163          146 SRE  148 (301)
Q Consensus       146 are  148 (301)
                      +|.
T Consensus       159 ~~~  161 (162)
T d1zuoa1         159 VQI  161 (162)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            874

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.96  E-value=2.8e-29  Score=209.87  Aligned_cols=120  Identities=26%  Similarity=0.352  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCeEEecC----CCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163           10 NPAVKRILQEVKEMQSNPSDDFMSLPL----EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~gi~a~p~----~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      -++.+||+||+++|++++++++.+.+.    ++|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.||++ 
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            368899999999999999988766554    337999999999999999999999999999999999999999999876 


Q ss_pred             -eecCC-CcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC--CCCCchh
Q 022163           85 -RFETQ-TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG  130 (301)
Q Consensus        85 -nv~~~-G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~--nP~~~l~  130 (301)
                       ||+.+ |.+|++.+... ++|+|+++|++||.+|+++|.+  |++++++
T Consensus        84 pnV~~~~g~~~~~~l~~l-~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~  132 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP  132 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHH-HTCCTTCCHHHHHHHHHHHHTSTTTTTCCCC
T ss_pred             ccCcCCCCEEcceecCcc-cCCCccCcHHHHHHHHHHHHCCCCCCCCCCC
Confidence             45544 66766555311 4799999999999999999964  5555443

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=205.14  Aligned_cols=111  Identities=19%  Similarity=0.335  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CeEEecCC-C--CccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEecCCc-
Q 022163           10 NPAVKRILQEVKEMQSNPSD-DFMSLPLE-E--NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNG-   84 (301)
Q Consensus        10 ~~a~kRL~kEl~~L~~~p~~-gi~a~p~~-d--nl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlTPn~-   84 (301)
                      .++.+||+||+++++++.++ ++.....+ +  |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.||++ 
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            46889999999999998654 45444443 2  5999999999999999999999999999999999999999999876 


Q ss_pred             -eecC-CCcEEeccCCCCCCCCCccccHHHHHHHHHHhCC
Q 022163           85 -RFET-QTKICLSISNHHPEHWQPSWSVRTALVALIAFMP  122 (301)
Q Consensus        85 -nv~~-~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~  122 (301)
                       ||+. +|.||++++.  .++|+|+++|++||.+|+++|.
T Consensus        83 pnV~~~~G~icl~~l~--~~~Wsp~~ti~~IL~~i~~lL~  120 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHT--LRDWKRAYTMETLLLDLRKEMA  120 (136)
T ss_dssp             TTBCTTTCBBCTTSHH--HHTCCTTCCHHHHHHHHHHHHT
T ss_pred             cccccCCCeEECCCCc--ccCcCccCcHHHHHHHHHHHHc
Confidence             5664 5999999875  3679999999999999999994

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.4e-18  Score=139.52  Aligned_cols=106  Identities=15%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhCC---CCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEE--EEEcCCCCCCCCCeeEEec-------C
Q 022163           15 RILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG--RIQLPAEYPFKPPSFMLLT-------P   82 (301)
Q Consensus        15 RL~kEl~~L~~~p---~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~--~I~fP~dYP~~PP~V~FlT-------P   82 (301)
                      +..+|+.++.+.-   .++......+|+...|.+.|.|+.+++|+||.|++  .|.||.+||++||.|.|.+       +
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            4556666665543   25566677788899999999999999999999998  5668999999999998874       2


Q ss_pred             CceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCC
Q 022163           83 NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT  123 (301)
Q Consensus        83 n~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~  123 (301)
                      +.||+.+|+||+++|+   ++|.+.+++.++|..|+.+|.+
T Consensus        98 h~~V~~~G~V~lp~L~---~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLH---EWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             SSSBCTTCBBCCHHHH---TCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCeECCCCCCcchhhc---CCCcccccHHHHHHHHHHHhCC
Confidence            4478999999999996   5556778999999999999854

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.3e-15  Score=125.49  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhhCCC---CCeEEecCCCCccEEEEEEeCCCCCCCCCCe---EEEEEEcCCCCCCCCCeeEEecC----
Q 022163           13 VKRILQEVKEMQSNPS---DDFMSLPLEENIFEWQFAIRGPGDTEFEGGI---YHGRIQLPAEYPFKPPSFMLLTP----   82 (301)
Q Consensus        13 ~kRL~kEl~~L~~~p~---~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~---F~~~I~fP~dYP~~PP~V~FlTP----   82 (301)
                      -+|+.+|+..+.++-+   +.......+|....+.+.+.|.-.++|+||.   |.+.|.||++||+.||.|.|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            4577888888866532   2333344466677888999999999999995   78889999999999999999764    


Q ss_pred             ---------CceecCCCcEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCCC
Q 022163           83 ---------NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG  127 (301)
Q Consensus        83 ---------n~nv~~~G~IClsiL~~~~e~WsP~~tI~~IL~~I~~lL~~nP~~  127 (301)
                               +.||+.+|+||+++|+   +.|.+..+|.++|..|+.+|.++|.|
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~---~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILH---CWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHH---SCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCcccccCCCCCCCCcEehHHhc---CCCCccCcHHHHHHHHHHHhcCCCCC
Confidence                     3378999999999997   66789999999999999999777754

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=7.5e-05  Score=60.35  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhh-------CCCCCeEEecCCCCccEEEEEEeCCCCCCCCCCeEEEEEEcCCCCCCCCCeeEEec---
Q 022163           12 AVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---   81 (301)
Q Consensus        12 a~kRL~kEl~~L~~-------~p~~gi~a~p~~dnl~~W~v~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~V~FlT---   81 (301)
                      =..||..||..|-+       +....|.+... .+=+.|++..-=-.+  ..-..|.+.+.+|..||..||.+..-.   
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn-~~GT~W~GkCWyihn--l~kYeFd~eFdIP~tYP~t~pEi~lPeLdG  102 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLESN-KEGTRWFGKCWYIHD--LLKYEFDIEFDIPITYPTTAPEIAVPELDG  102 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEC-TTSSEEEEEEEEEET--TEEEEEEEEEECCTTTTTSCCCCBCGGGSS
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCeeeceeeEEEe--eeEEEEEEEeccCCCCCCCCcceeccccCC
Confidence            57899999999854       22344444432 222344332210000  011346677889999999999997654   


Q ss_pred             CCceecCCCcEEeccCCCCCCCC---CccccHHHHH
Q 022163           82 PNGRFETQTKICLSISNHHPEHW---QPSWSVRTAL  114 (301)
Q Consensus        82 Pn~nv~~~G~IClsiL~~~~e~W---sP~~tI~~IL  114 (301)
                      +....|..|+|||+.-  ..--|   .|.++|.+.|
T Consensus       103 KTaKMYRGGkIClt~H--FkPLWarN~PkfGIaHal  136 (162)
T d2in1a1         103 KTAKMYRGGKICLTDH--FKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SCSSSCGGGBCCCCTT--SHHHHHTTTTSCCHHHHH
T ss_pred             chhhhhcCceeecccc--chhhhhhcCCchhHHHHH
Confidence            2224578899999742  11224   3556666654

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.096  Score=39.24  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhCCCCCeEEecCCCCccE--EEEEEeCCCC--CCCCCCeEEEEEEcCCCCCCCCCeeEEecC
Q 022163           16 ILQEVKEMQSNPSDDFMSLPLEENIFE--WQFAIRGPGD--TEFEGGIYHGRIQLPAEYPFKPPSFMLLTP   82 (301)
Q Consensus        16 L~kEl~~L~~~p~~gi~a~p~~dnl~~--W~v~I~GP~~--TpYeGG~F~~~I~fP~dYP~~PP~V~FlTP   82 (301)
                      |..|+..|+.-=+..+......++...  ..+.+....+  ..-......+.+.||.+||..+|.+.++++
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            567888888754455655444444444  4444442111  111124678889999999999999987643