Citrus Sinensis ID: 022166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
cccccccHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHHHccc
ccccccccccHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHccccEEccHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHccc
MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVetskamdiasdpriGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDAnreisdipeKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKslpyhasrnrhfsyipaevAANHgllvkeggrseihldsrEGLCDAVFEMASVANVHLLKArelsgavpiearpvllesvPAQVLLDslnrvqfdvfdprlargvlgvsplwyhvklkwyswrgky
MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVetskamdiasdpriGLMRLVWWKEAIDKIYVRKQIEHPVAQALASvlsenkiskgwlkrsvearindanreisdipekieDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLArgvlgvsplwyhvklkwyswrgky
MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIgkasglllllkslPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
*********AAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDA***I*DIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWR***
********RAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
**********AFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGG*********ASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
********RAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
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MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
A7YVD7333 NADH dehydrogenase (ubiqu yes no 0.933 0.843 0.384 2e-49
Q330K2333 NADH dehydrogenase (ubiqu yes no 0.910 0.822 0.378 7e-49
A2AIL4333 NADH dehydrogenase (ubiqu yes no 0.910 0.822 0.371 3e-48
D3ZN43333 NADH dehydrogenase (ubiqu yes no 0.910 0.822 0.371 8e-48
Q9VYS5334 NADH dehydrogenase (ubiqu yes no 0.820 0.739 0.408 5e-41
Q54E48356 NADH dehydrogenase (ubiqu yes no 0.843 0.713 0.332 6e-35
>sp|A7YVD7|NDUF6_BOVIN NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Bos taurus GN=NDUFAF6 PE=2 SV=1 Back     alignment and function desciption
 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 174/299 (58%), Gaps = 18/299 (6%)

Query: 3   GASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPR 62
           GAS + R    +C++ +R  DY  YLC L LP E R +AFALRAFNVE ++  D  S+  
Sbjct: 53  GASGTDR----YCLELLRKRDYEGYLCSLLLPAESRSSAFALRAFNVELAQIKDSVSEKT 108

Query: 63  IGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREIS 122
           IGLMR+ +WK+ +D IY       PVA  L   +  + ++K WL + ++ R  + + +  
Sbjct: 109 IGLMRMQFWKKTVDDIYSDNPPHQPVAIELWKAVRRHNLTKRWLMKIIDEREKNLDDKAY 168

Query: 123 DIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYHAS 182
                I++LE YAE+T S+LLY TL+  GIK   ADHAASHIGKA G++  L++ PYH S
Sbjct: 169 ---RNIQELENYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGS 225

Query: 183 RNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGA 242
           R R F  +P ++   HG+  ++  R     + R    D V+++AS A++HL  AR    +
Sbjct: 226 RRRVF--LPMDICMLHGVSQEDFLRKSQDRNVR----DVVYDVASQAHLHLKHARSFHRS 279

Query: 243 VPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGKY 301
           +P++A P  L++V  +  L  + +V FD+F P L R    + PL  +++    SWR +Y
Sbjct: 280 IPVKAFPAFLQTVALEDYLKKIQQVDFDLFHPSLQRKN-TLLPLSLYIQ----SWRKRY 333
Required for the function of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I).
Bos taurus (taxid: 9913)
>sp|Q330K2|NDUF6_HUMAN NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Homo sapiens GN=NDUFAF6 PE=1 SV=2 Back     alignment and function description
>sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Mus musculus GN=Ndufaf6 PE=1 SV=1 Back     alignment and function description
>sp|D3ZN43|NDUF6_RAT NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Rattus norvegicus GN=Ndufaf6 PE=3 SV=1 Back     alignment and function description
>sp|Q9VYS5|NDUF6_DROME NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog OS=Drosophila melanogaster GN=CG15738 PE=2 SV=1 Back     alignment and function description
>sp|Q54E48|NDUF6_DICDI NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog OS=Dictyostelium discoideum GN=DDB_G0291852 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
224124992301 predicted protein [Populus trichocarpa] 1.0 1.0 0.813 1e-141
255537023351 protein with unknown function [Ricinus c 1.0 0.857 0.803 1e-140
225449889303 PREDICTED: UPF0551 protein C8orf38 homol 0.996 0.990 0.763 1e-136
147784698303 hypothetical protein VITISV_026816 [Viti 0.996 0.990 0.763 1e-136
449460407303 PREDICTED: NADH dehydrogenase (ubiquinon 1.0 0.993 0.815 1e-135
297837153303 hypothetical protein ARALYDRAFT_475079 [ 1.0 0.993 0.759 1e-133
356550901303 PREDICTED: UPF0551 protein C8orf38 homol 1.0 0.993 0.752 1e-133
357481955315 hypothetical protein MTR_5g012060 [Medic 1.0 0.955 0.752 1e-133
18407646304 isoprenoid biosynthesis enzyme domain-co 0.993 0.983 0.757 1e-131
242091666302 hypothetical protein SORBIDRAFT_10g00045 0.993 0.990 0.671 1e-107
>gi|224124992|ref|XP_002329864.1| predicted protein [Populus trichocarpa] gi|222871101|gb|EEF08232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/301 (81%), Positives = 271/301 (90%)

Query: 1   MSGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASD 60
           M+GASSSLR AFS+CVQQVRNYDYHHYLCLLELPP +RK AFALRAFNVET++AMD+ASD
Sbjct: 1   MNGASSSLRTAFSYCVQQVRNYDYHHYLCLLELPPNIRKAAFALRAFNVETARAMDVASD 60

Query: 61  PRIGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANRE 120
           PRIGLMRL+WW+EAIDKIY  K IEHP AQAL+SV+SEN+ISKGWLKR VEARINDA RE
Sbjct: 61  PRIGLMRLLWWQEAIDKIYANKVIEHPAAQALSSVISENRISKGWLKRPVEARINDARRE 120

Query: 121 ISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLKSLPYH 180
           ++DIPE IE+LEKYAEDT+STLLY TLQAGGI+S AADHAASH GKASGLLLLL+SLPYH
Sbjct: 121 VTDIPETIEELEKYAEDTISTLLYMTLQAGGIRSTAADHAASHAGKASGLLLLLRSLPYH 180

Query: 181 ASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELS 240
           ASRNRHF YIP EVAA HGLLVKEGGR EI LDSRE LC+AVF+MASVANVHL KAR L+
Sbjct: 181 ASRNRHFCYIPTEVAAKHGLLVKEGGRFEIRLDSRESLCNAVFDMASVANVHLQKARSLA 240

Query: 241 GAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGK 300
           G VP EAR VLL +VPAQV LD+L+RV FDVFDPRLARGVLG+SP+ Y +KLKW SWRGK
Sbjct: 241 GTVPTEARSVLLPAVPAQVFLDTLSRVHFDVFDPRLARGVLGISPVSYQLKLKWSSWRGK 300

Query: 301 Y 301
           Y
Sbjct: 301 Y 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537023|ref|XP_002509578.1| protein with unknown function [Ricinus communis] gi|223549477|gb|EEF50965.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|225449889|ref|XP_002266769.1| PREDICTED: UPF0551 protein C8orf38 homolog, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784698|emb|CAN63693.1| hypothetical protein VITISV_026816 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460407|ref|XP_004147937.1| PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like [Cucumis sativus] gi|449494336|ref|XP_004159517.1| PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297837153|ref|XP_002886458.1| hypothetical protein ARALYDRAFT_475079 [Arabidopsis lyrata subsp. lyrata] gi|297332299|gb|EFH62717.1| hypothetical protein ARALYDRAFT_475079 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356550901|ref|XP_003543821.1| PREDICTED: UPF0551 protein C8orf38 homolog, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357481955|ref|XP_003611263.1| hypothetical protein MTR_5g012060 [Medicago truncatula] gi|355512598|gb|AES94221.1| hypothetical protein MTR_5g012060 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18407646|ref|NP_564800.1| isoprenoid biosynthesis enzyme domain-containing protein [Arabidopsis thaliana] gi|6630461|gb|AAF19549.1|AC007190_17 F23N19.9 [Arabidopsis thaliana] gi|21553608|gb|AAM62701.1| unknown [Arabidopsis thaliana] gi|109946495|gb|ABG48426.1| At1g62730 [Arabidopsis thaliana] gi|332195877|gb|AEE33998.1| isoprenoid biosynthesis enzyme domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242091666|ref|XP_002436323.1| hypothetical protein SORBIDRAFT_10g000450 [Sorghum bicolor] gi|241914546|gb|EER87690.1| hypothetical protein SORBIDRAFT_10g000450 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
TAIR|locus:2026182304 AT1G62730 [Arabidopsis thalian 0.993 0.983 0.717 2.8e-114
UNIPROTKB|F1PMK8334 NDUFAF6 "Uncharacterized prote 0.950 0.856 0.356 3.1e-44
UNIPROTKB|A7YVD7333 NDUFAF6 "NADH dehydrogenase (u 0.943 0.852 0.37 1e-43
UNIPROTKB|Q330K2333 NDUFAF6 "NADH dehydrogenase (u 0.910 0.822 0.364 5.7e-43
MGI|MGI:1924197333 Ndufaf6 "NADH dehydrogenase (u 0.910 0.822 0.357 1.2e-42
RGD|1309085333 Ndufaf6 "NADH dehydrogenase (u 0.910 0.822 0.357 3.2e-42
UNIPROTKB|F1RY58336 NDUFAF6 "Uncharacterized prote 0.936 0.839 0.363 5.2e-42
UNIPROTKB|F1NEK7281 C2H8orf38 "Uncharacterized pro 0.903 0.967 0.336 2.1e-38
ZFIN|ZDB-GENE-100112-1344 ndufaf6 "NADH dehydrogenase (u 0.906 0.793 0.346 2.1e-38
FB|FBgn0030352334 CG15738 [Drosophila melanogast 0.820 0.739 0.385 1.1e-37
TAIR|locus:2026182 AT1G62730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
 Identities = 216/301 (71%), Positives = 245/301 (81%)

Query:     3 GASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPR 62
             G SSSLR+A S+CVQQVRNYDYHHYLCLLELP E+RK AFALRAFNVET++AMD+ASDP+
Sbjct:     4 GGSSSLRSALSYCVQQVRNYDYHHYLCLLELPTEMRKAAFALRAFNVETARAMDVASDPK 63

Query:    63 IGLMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREIS 122
             IGLMRL+WW+EAIDK+Y +K I HP AQAL+  +SE+ ISK WLKRSV+ARI DA RE+ 
Sbjct:    64 IGLMRLLWWQEAIDKLYTKKPINHPAAQALSWAISEHNISKPWLKRSVDARIRDAQREVD 123

Query:   123 DIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHIXXXXXXXXXXXXXPYHAS 182
             DIPE I +LEKYAEDTVSTLLY TLQAGGI S  ADHAASHI             PYH +
Sbjct:   124 DIPESIAELEKYAEDTVSTLLYNTLQAGGISSTTADHAASHIGKASGLVLLLKSLPYHCT 183

Query:   183 RNRHFSYIPAEVAANHGLLVKEGGRSEIHLD--SREGLCDAVFEMASVANVHLLKARELS 240
             RNRH SYIPA++A  HGLLVK+GGR EI LD  SREGL + VFE+ASVAN HLLKAREL+
Sbjct:   184 RNRHQSYIPADLAEKHGLLVKQGGRLEILLDNDSREGLSNVVFEIASVANAHLLKARELA 243

Query:   241 GAVPIEARPVLLESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRGK 300
             G VP EA+PVLL SVP QVLLDSLN+VQFDVFDPR+ RGVLGV PL +  KLKWYSWR  
Sbjct:   244 GKVPAEAKPVLLHSVPVQVLLDSLNKVQFDVFDPRIQRGVLGVPPLLFQFKLKWYSWRAM 303

Query:   301 Y 301
             +
Sbjct:   304 F 304
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016740 "transferase activity" evidence=IEA
GO:0006457 "protein folding" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
UNIPROTKB|F1PMK8 NDUFAF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7YVD7 NDUFAF6 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q330K2 NDUFAF6 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1924197 Ndufaf6 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309085 Ndufaf6 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RY58 NDUFAF6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEK7 C2H8orf38 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100112-1 ndufaf6 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0030352 CG15738 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2AIL4NDUF6_MOUSENo assigned EC number0.37150.91020.8228yesno
Q330K2NDUF6_HUMANNo assigned EC number0.37840.91020.8228yesno
D3ZN43NDUF6_RATNo assigned EC number0.37150.91020.8228yesno
A7YVD7NDUF6_BOVINNo assigned EC number0.38460.93350.8438yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
pfam00494262 pfam00494, SQS_PSY, Squalene/phytoene synthase 2e-42
COG1562288 COG1562, ERG9, Phytoene/squalene synthetase [Lipid 1e-17
TIGR03465266 TIGR03465, HpnD, squalene synthase HpnD 4e-10
cd00683265 cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphat 4e-06
>gnl|CDD|215948 pfam00494, SQS_PSY, Squalene/phytoene synthase Back     alignment and domain information 
 Score =  146 bits (370), Expect = 2e-42
 Identities = 80/265 (30%), Positives = 118/265 (44%), Gaps = 16/265 (6%)

Query: 19  VRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWW---KEAI 75
           +R +    YL  L LPPELR+   AL AF  E    +D  SDP IG  RL WW    +A 
Sbjct: 1   LRKHSRSFYLASLLLPPELRRAVAALYAFCREADDIVDEVSDPLIGRARLDWWRDALDAA 60

Query: 76  DKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYA 135
                     HPV +ALA  +    + +      ++    D  +   D  E + +LE+Y 
Sbjct: 61  FAGRRLGPSTHPVLRALADTVRRYGLPREPFLELIDGMEMDLEK---DRYETLAELEEYC 117

Query: 136 EDTVSTLLYTTLQAGGIKS--AAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAE 193
                 +    L+  G++   AAA  AA H+G A  L  +L+ +   A R R   Y+PA+
Sbjct: 118 YRVAGVVGLLLLRLLGVRDDAAAALEAARHLGIALQLTNILRDVGEDARRGR--VYLPAD 175

Query: 194 VAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGAV-PIEARP-VL 251
             A  G+  ++  R          L   + E+A+ A  HL +AR L   + P  AR  VL
Sbjct: 176 WLARFGVSPEDLLRGRPS----PALRALIRELAARARAHLAEARALLALLPPRRARLAVL 231

Query: 252 LESVPAQVLLDSLNRVQFDVFDPRL 276
           L +   + +LD L    +DV   R+
Sbjct: 232 LAAALYRAILDRLEAAGYDVLRRRV 256

Length = 262
>gnl|CDD|224478 COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|163278 TIGR03465, HpnD, squalene synthase HpnD Back     alignment and domain information
>gnl|CDD|173831 cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
PLN02632334 phytoene synthase 100.0
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 100.0
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 100.0
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 100.0
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 100.0
COG1562288 ERG9 Phytoene/squalene synthetase [Lipid metabolis 100.0
KOG4411292 consensus Phytoene/squalene synthetase [Lipid tran 100.0
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 100.0
KOG1459413 consensus Squalene synthetase [Lipid transport and 99.79
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 99.77
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.7
KOG1459413 consensus Squalene synthetase [Lipid transport and 99.35
PLN02890422 geranyl diphosphate synthase 93.3
PRK10888323 octaprenyl diphosphate synthase; Provisional 93.24
PRK10581299 geranyltranstransferase; Provisional 93.22
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 92.68
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 92.59
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 91.36
PLN02857416 octaprenyl-diphosphate synthase 91.29
CHL00151323 preA prenyl transferase; Reviewed 89.36
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 85.09
>PLN02632 phytoene synthase Back     alignment and domain information 
Probab=100.00  E-value=6e-62  Score=446.83  Aligned_cols=261  Identities=21%  Similarity=0.263  Sum_probs=247.1

Q ss_pred             hHHHHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCCCCCC
Q 022166            7 SLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQIEH   86 (301)
Q Consensus         7 ~~~~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~~~~~   86 (301)
                      .+.+++++|.++++++|+|||++++|+|+++|+++++||+|||++|+|+|+++++..+.++|+||++.++.++.|. +.|
T Consensus        44 ~l~~a~~~c~~i~r~~s~sFyla~~lLP~~~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~-~~~  122 (334)
T PLN02632         44 LLEEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFDGR-PYD  122 (334)
T ss_pred             cchHHHHHHHHHHhhcCchHHHHHHhCCHHHHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCC-CCC
Confidence            5889999999999999999999999999999999999999999999999999888888899999999999999986 589


Q ss_pred             HHHHHHHHhHhhCCCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCC------ccHHHH
Q 022166           87 PVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKS------AAADHA  160 (301)
Q Consensus        87 Pv~~aL~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~------~~~~~~  160 (301)
                      |+..+|.++++.++++.++|.+||+||++|++..+   |+|++||+.|||+|||+||+|+++++|..+      +.+.+.
T Consensus       123 pv~~aL~~~~~~~~L~~~~~~~li~g~~~Dl~~~~---~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~  199 (334)
T PLN02632        123 MLDAALADTVSKFPLDIQPFRDMIEGMRMDLVKSR---YENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNA  199 (334)
T ss_pred             hHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHH
Confidence            99999999999999999999999999999999998   999999999999999999999999998754      235788


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 022166          161 ASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARE  238 (301)
Q Consensus       161 a~~lG~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~  238 (301)
                      |.++|.|+|+|||||||++|++  +||||||.|+|.+||++  +++.+.      .+++++.++.+++++|+.||.+|+.
T Consensus       200 A~~lG~AlQltNILRDv~eD~~--~GRvYLP~e~L~~~Gv~~edl~~~~------~~~~~~~l~~~~~~~Ar~~~~~a~~  271 (334)
T PLN02632        200 ALALGIANQLTNILRDVGEDAR--RGRVYLPQDELAQFGLTDEDIFAGK------VTDKWRAFMKFQIKRARMYFAEAEE  271 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--CCceeCCHHHHHHcCCCHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  99999999999999999  777776      7799999999999999999999999


Q ss_pred             hcCCCCCcch-hHHhhHhHHHHHHHHHHhCCCCCCCcccccc
Q 022166          239 LSGAVPIEAR-PVLLESVPAQVLLDSLNRVQFDVFDPRLARG  279 (301)
Q Consensus       239 ~~~~lp~~~r-~~~~~~~~~~~~L~~l~~~~~~v~~~r~~~~  279 (301)
                      ++..+|++.| ++++++.+|+.+|++|++.||++|++|++++
T Consensus       272 ~l~~lp~~~r~~v~~a~~~y~~iL~~i~~~~~~v~~~R~~l~  313 (334)
T PLN02632        272 GVSELDPASRWPVWASLLLYRQILDAIEANDYDNFTKRAYVG  313 (334)
T ss_pred             hHhhCCHHhHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCccC
Confidence            9999999998 5667888999999999999999999999997

>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information
>KOG4411 consensus Phytoene/squalene synthetase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism] Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 1e-07
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Length = 293 Back     alignment and structure
 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 18/254 (7%)

Query: 2   SGASSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDP 61
           + A + +   F +C + ++ +          LP + RK  +A+ A   +   ++D+  D 
Sbjct: 4   AAAMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDI 63

Query: 62  RIG---LMRLVWWKEAIDKIYVRKQIEHPVAQALASVLSENKISKGWLKRSVEARINDAN 118
           +        +   ++   + +   Q +  +  AL  V     I+       ++    D +
Sbjct: 64  QFLNQIKEDIQSIEKYPYEYH-HFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 122

Query: 119 REISDIPEKIEDLEKYAE---DTVSTLLYTTLQAGGIKSAAADHAASHIGKASGLLLLLK 175
                + E   +L  Y      TV  +L   L     ++      A  +G++  L+ +L+
Sbjct: 123 F---TMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILR 177

Query: 176 SLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLK 235
            +       R   Y   +    + + + E  ++ ++        D     A++A      
Sbjct: 178 DVGEDFENER--IYFSKQRLKQYEVDIAEVYQNGVN----NHYIDLWEYYAAIAEKDFRD 231

Query: 236 ARELSGAVPIEARP 249
             +      IEA+P
Sbjct: 232 VMDQIKVFSIEAQP 245
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3asx_A* 3lee_A* 3q2z_A* 3q30_A* 1ezf_A* Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 100.0
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 100.0
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 95.45
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 95.44
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 95.42
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 95.37
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 95.36
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 94.85
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 94.73
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 94.73
4f62_A317 Geranyltranstransferase; enzyme function initiativ 94.72
3lsn_A304 Geranyltranstransferase; structural genomics, prot 94.66
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 94.59
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 94.54
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 94.53
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 94.46
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 94.45
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 94.42
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 94.34
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 94.29
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 93.99
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 93.95
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 93.86
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 93.76
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 93.63
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 93.5
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 93.46
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 93.44
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 93.26
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 93.2
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 93.11
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 93.07
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 93.06
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 92.92
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 92.53
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 92.34
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 90.6
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 90.45
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 88.88
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 87.88
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 86.19
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 84.6
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 81.99
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 81.59
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 80.49
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
Probab=100.00  E-value=1.4e-63  Score=450.58  Aligned_cols=275  Identities=16%  Similarity=0.194  Sum_probs=239.8

Q ss_pred             cchHHHHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhcCCCC
Q 022166            5 SSSLRAAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIASDPRIGLMRLVWWKEAIDKIYVRKQI   84 (301)
Q Consensus         5 ~~~~~~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~rL~~w~~~l~~~~~g~~~   84 (301)
                      .++++++|++|.++++++++|||++++|+|++.|+++++||+|||++|||+|+..++  +..+|+||++.++.++.|. +
T Consensus         8 p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~--~~~~L~~~~~~l~~~~~g~-~   84 (294)
T 4hd1_A            8 PVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAGD--RMAALDAYEEELRRAFAGE-A   84 (294)
T ss_dssp             CGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCSC--HHHHHHHHHHHHHHHHHTC-C
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCChh--HHHHHHHHHHHHHHHhcCC-C
Confidence            457999999999999999999999999999999999999999999999999987544  4458999999999999987 5


Q ss_pred             CCHHHHHHHHhHhhCCCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCCccHHHHHHHH
Q 022166           85 EHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHAASHI  164 (301)
Q Consensus        85 ~~Pv~~aL~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~~~~~~~a~~l  164 (301)
                      .||+..+|.++++.+++|.++|.+||+||++|++..+   |+|++||+.||++|||+||+|++.++|..+++..+.|.++
T Consensus        85 ~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~---~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~~~~~~A~~l  161 (294)
T 4hd1_A           85 TTPAFRALQFTIATCNLPMEPFLRLIEANRRDQRKHT---YDTWEDLRDYCRYSADPVGRLVLGIFGCLDDERARLSDAT  161 (294)
T ss_dssp             CSHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSB---CCSHHHHHHHHHHHTHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCC---CCCHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHH
Confidence            7999999999999999999999999999999999998   9999999999999999999999999999988888999999


Q ss_pred             HHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022166          165 GKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFEMASVANVHLLKARELSGA  242 (301)
Q Consensus       165 G~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~  242 (301)
                      |.|+|+||||||+++|+.  +||||||.|+|.+||++  ++..+.      .+++++.++.+++++|+.||.+|+.++..
T Consensus       162 G~AlQltNilRDv~eD~~--~gR~YlP~~~l~~~gv~~~dl~~~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  233 (294)
T 4hd1_A          162 CTALQVANHMQDIDRDLA--LGRIYVPRADLEQFGATLDDIRARR------ATDGVRRCIALEVDRAQALFDEGRRLESL  233 (294)
T ss_dssp             HHHHHHHHHHHTHHHHHH--TTCBCSCHHHHHTTTCCHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred             HHHHHHHHHHHhchhhhc--cCceeCCHHHHHHcCCCHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999  99999999999999999  777776      77999999999999999999999999999


Q ss_pred             CCCcchhHH-hhHhHHHHHHHHHHhCCCCCCCccccccccCCCchhhhHHHHHHHhhc
Q 022166          243 VPIEARPVL-LESVPAQVLLDSLNRVQFDVFDPRLARGVLGVSPLWYHVKLKWYSWRG  299 (301)
Q Consensus       243 lp~~~r~~~-~~~~~~~~~L~~l~~~~~~v~~~r~~~~~~~~~~~~~~~~~~w~~~~~  299 (301)
                      +|++.+.++ ++..+|..+|++|++.|||+|++|++++     +. +++.++|.+|.+
T Consensus       234 lp~~~r~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs-----~~-~Kl~l~~~al~~  285 (294)
T 4hd1_A          234 VPPRLARQLKLYRLGGEAILAAIRRQGYNPFAGRPVVS-----GK-QKLRIALSVLAG  285 (294)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTTTCCC---------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccC-----HH-HHHHHHHHHHHH
Confidence            999887655 5677999999999999999999999986     22 345556666654
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 301
d1ezfa_333 a.128.1.2 (A:) Squalene synthase {Human (Homo sapi 3e-13
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Squalene synthase
domain: Squalene synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 22/253 (8%), Positives = 68/253 (26%), Gaps = 21/253 (8%)

Query: 11  AFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMD-IASDPRIGLMRLV 69
           +   C + +          +  L  E+R                 D +       +  L 
Sbjct: 2   SLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLH 61

Query: 70  WWKEAIDKIYVRK----QIEHPVAQALASVLSENKISKGWLKRSVEARINDANREISDIP 125
            +   + +   R     + +  V +   ++  E +      +  +          +++  
Sbjct: 62  NFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFL 121

Query: 126 EK----IEDLEKYAEDTVSTLLYTTLQAGGIKSAAADHA------ASHIGKASGLLLLLK 175
           +K     ++ +KY       +     +                  A+ +G       +++
Sbjct: 122 DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIR 181

Query: 176 SLPYHASRNRHFSYIPAEVAANHGLLVKEGGRSEIHLDSREGLCDAVFEMASVANVHLLK 235
                    R   + P EV + +   + +  + E      +     + E+ + A  H+  
Sbjct: 182 DYLEDQQGGR--EFWPQEVWSRYVKKLGDFAKPENI----DLAVQCLNELITNALHHIPD 235

Query: 236 ARELSGAVPIEAR 248
                  +  ++ 
Sbjct: 236 VITYLSRLRNQSV 248

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 100.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 94.9
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 93.96
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 92.92
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 90.01
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 88.21
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 83.72
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 82.2
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Squalene synthase
domain: Squalene synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=362.05  Aligned_cols=260  Identities=9%  Similarity=-0.002  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHhccCChhhHHhhcCChhhhhHHHHHHHHHHHHHHhcccCC-ChHHHHHHHHHHHHHHHHHhcCC----CC
Q 022166           10 AAFSHCVQQVRNYDYHHYLCLLELPPELRKTAFALRAFNVETSKAMDIAS-DPRIGLMRLVWWKEAIDKIYVRK----QI   84 (301)
Q Consensus        10 ~~~~~c~~~~~~~~~s~~~a~~~lp~~~R~~~~alyaf~r~~d~i~D~~~-~~~~~~~rL~~w~~~l~~~~~g~----~~   84 (301)
                      +++++|.++++++|+|||+++++||+++|.+++++|+|||.+|||+|+.. +...+...|.+|++.+.....+.    +.
T Consensus         1 ~sl~~C~~~l~~~SrSF~~a~~~Lp~~~R~~v~~lYafcR~~DdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~~~~   80 (333)
T d1ezfa_           1 NSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEK   80 (333)
T ss_dssp             CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCCCST
T ss_pred             ChHHHHHHHHHhhCccHHHHHHHCCHHHHHHHHHHHHHHHHhhhhHhCCCCCHHHHHHHHHHHHHHHHHhhhcccccCcc
Confidence            36899999999999999999999999999999999999999999999875 45677788999999987755332    33


Q ss_pred             CCHHHHHHHHhH-------hhCCCCHHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHhhhhHHHHHHHHhcCCCC---
Q 022166           85 EHPVAQALASVL-------SENKISKGWLKRSVEARINDANREISDIPEKIEDLEKYAEDTVSTLLYTTLQAGGIKS---  154 (301)
Q Consensus        85 ~~Pv~~aL~~~~-------~~~~l~~~~l~~li~~~~~dl~~~~~~~~~t~~dL~~Y~~~~ag~vg~l~~~~lg~~~---  154 (301)
                      .+|+...+..++       ..+..+...+.+.+.+...|....+   ++|++||+.|||+|||+||+|+++++|..+   
T Consensus        81 ~~~ll~~~~~v~~~~~~l~~~~~~~i~~~~~~m~~gm~d~~~~~---~~t~~dL~~Ycy~VAG~VG~~l~~l~~~~~~~~  157 (333)
T d1ezfa_          81 DRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKH---VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED  157 (333)
T ss_dssp             THHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC
T ss_pred             hHHHHhhccHHHHHHHHHHHHhccchHHHHHHHhccHHHHccCc---CCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCcc
Confidence            445555444444       3444444445555555555555556   999999999999999999999999997643   


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHHhchhhhhcCCCcccccHHHHHhCCCc--hhccCCccccccCcHHHHHHHHHHHHHH
Q 022166          155 ---AAADHAASHIGKASGLLLLLKSLPYHASRNRHFSYIPAEVAANHGLL--VKEGGRSEIHLDSREGLCDAVFEMASVA  229 (301)
Q Consensus       155 ---~~~~~~a~~lG~alql~nilRd~~~d~~~~~gR~yLP~d~l~~~gv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~A  229 (301)
                         +...+.|.++|.|+|+||||||+++|++  +||||||.|+|.+||++  ++..+.      .++++..++.+++++|
T Consensus       158 ~~~~~~~~~A~~lG~AlQltNIlRDi~eD~~--~gR~YlP~e~l~~~g~~~~dl~~~~------~~~~~~~~~~~l~~~A  229 (333)
T d1ezfa_         158 PLVGEDTERANSMGLFLQKTNIIRDYLEDQQ--GGREFWPQEVWSRYVKKLGDFAKPE------NIDLAVQCLNELITNA  229 (333)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH--HTCCCSCHHHHTTTCSSGGGGGSGG------GHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--CCcEECCHHHHHHcCCCHHHHHhcc------chHHHHHHHHHHHHHH
Confidence               2346789999999999999999999999  99999999999999999  676665      6789999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchhHH--hhHhHHHHHHHHHHhCCCCCCCcccccccc
Q 022166          230 NVHLLKARELSGAVPIEARPVL--LESVPAQVLLDSLNRVQFDVFDPRLARGVL  281 (301)
Q Consensus       230 ~~~l~~a~~~~~~lp~~~r~~~--~~~~~~~~~L~~l~~~~~~v~~~r~~~~~~  281 (301)
                      +.||++|.+++..||.+.+..+  ++.+++..++ ++.++|+++|++++.++..
T Consensus       230 ~~~~~~a~~y~~~lp~~~~~~~~~~~~~~a~~tl-~~~~~~~~~~~~~vkisr~  282 (333)
T d1ezfa_         230 LHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL-AACYNNQQVFKGAVKIRKG  282 (333)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH-HHHTTCGGGGTSCCCC---
T ss_pred             HHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHH-HHHHcCchhcCCCeEeeHH
Confidence            9999999999999998876544  4555566665 5556799999999999843
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure