Citrus Sinensis ID: 022173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEcccccEccccccccccccccEEEEccHHHHHcccccHcHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccHHHHHHHccHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MQQALKGMMnqmntqnkpfgnaafpqgspfpfpnppasgpttpypaasqprftmdipatkveaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnfedvketssskdaqppkdsqngaafnynagspfggqsakkegrfLTVDTLEKLmedpqvqkmvypslpeemrnpasfklMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMmanpeialgfqspRVQAAIMECSqnpmniikyqndKEVMSVITKIAElfpgvtgts
Flexible Loop (DISEMBL)
MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnFEDVKEtssskdaqppkdsQNGAAFNYNAGspfggqsakkEGRFLTVDTLeklmedpqvQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAelfpgvtgts
Low Complexity Region (SEG)
MQQALKGMMNQMNTQNKPFGNAAfpqgspfpfpnppasgpttpypaasQPRFTMDIPATKVEAATATDvegkkevkgetevkeepkkYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************************C***EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG*****
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************EVITKMMANPEIALGFQSPRVQAAIMECSQNPM**I*YQNDKEVMSVITKIAE**PGV****
Disordered Region (DISEMBL)
********MNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEA*******************EEPKKYAFVDVSPEETLQKSSFDN******************SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered Region (DISPRO)
***********************************************************KVEAATATDVEGKKEVK********PKKYAFVDVSPEE*****************************************************LTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q8GT66	436	Protein TIC 40, chloropla	N/A	no	0.973	0.672	0.610	1e-101
Q9FMD5	447	Protein TIC 40, chloropla	yes	no	0.993	0.668	0.563	4e-77
Q5ZLF0	361	Hsc70-interacting protein	yes	no	0.176	0.146	0.415	4e-06
P50503	368	Hsc70-interacting protein	yes	no	0.182	0.149	0.363	4e-05
P50502	369	Hsc70-interacting protein	yes	no	0.182	0.149	0.345	0.0001
Q5RF31	369	Hsc70-interacting protein	yes	no	0.182	0.149	0.345	0.0001
Q99L47	371	Hsc70-interacting protein	yes	no	0.182	0.148	0.345	0.0002
Q8NFI4	369	Putative protein FAM10A5	yes	no	0.182	0.149	0.345	0.0005

>sp|Q8GT66|TIC40_PEA Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 233/313 (74%), Gaps = 20/313 (6%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP------------YPAAS 48
           MQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP              +AS
Sbjct: 128 MQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQATSTRSAS 187

Query: 49  QPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNF 107
           Q   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDVSPEET+QK++F+ F
Sbjct: 188 QSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDVSPEETVQKNAFERF 243

Query: 108 EDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQ 166
           +DV E+SS K+A+ P + SQNG  F    G      S +K    L+VD LEK+MEDP VQ
Sbjct: 244 KDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LSVDALEKMMEDPTVQ 301

Query: 167 KMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE 226
           +MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R++D+LKNFDLNS +
Sbjct: 302 QMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPD 361

Query: 227 VKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSV 286
           VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM+I+KYQNDKEVM V
Sbjct: 362 VKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKEVMDV 421

Query: 287 ITKIAELFPGVTG 299
             KI+ELFPGV+G
Sbjct: 422 FNKISELFPGVSG 434

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.
Pisum sativum (taxid: 3888)

>sp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1

 Score =  288 bits (737), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 177/314 (56%), Positives = 221/314 (70%), Gaps = 15/314 (4%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRF--TMDIPA 58
           MQ A+K MMNQMNTQN  F N+ FP GSPFPFP PP + P +    +       T+D+ A
Sbjct: 134 MQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVDVTA 193

Query: 59  TKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFE 108
           TKVE           A D+E  K   V   ++ K+E K YAF D+SPEET ++S F N+ 
Sbjct: 194 TKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFSNYA 253

Query: 109 DVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQV 165
           +V ET+S K+ +  +D  QNGA  A    A   F      K G  L+V+ LEK+MEDP V
Sbjct: 254 EVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMEDPTV 313

Query: 166 QKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSA 225
           QKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D R+ D+LKNFDLNS 
Sbjct: 314 QKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSP 373

Query: 226 EVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMS 285
           EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM 
Sbjct: 374 EVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMD 433

Query: 286 VITKIAELFPGVTG 299
           V  KI++LFPG+TG
Sbjct: 434 VFNKISQLFPGMTG 447

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 294
           + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Gallus gallus (taxid: 9031)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query: 242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           + +++++PE     Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
94449066	460	plastid Tic40 [Ricinus communis]	0.966	0.632	0.609	1e-101
255582251	465	conserved hypothetical protein [Ricinus	0.966	0.625	0.609	1e-101
5531416	436	translocon Tic40 [Pisum sativum]	0.973	0.672	0.613	1e-100
356569945	432	PREDICTED: uncharacterized protein LOC10	0.956	0.666	0.635	1e-99
75150408	436	RecName: Full=Protein TIC 40, chloroplas	0.973	0.672	0.610	3e-99
356539740	429	PREDICTED: uncharacterized protein LOC10	0.956	0.671	0.629	6e-99
224079472	429	predicted protein [Populus trichocarpa]	0.980	0.687	0.640	2e-94
449462371	419	PREDICTED: protein TIC 40, chloroplastic	0.960	0.689	0.59	2e-90
225460309	436	PREDICTED: protein TIC 40, chloroplastic	0.973	0.672	0.577	4e-89
297807687	447	hypothetical protein ARALYDRAFT_488521 [	0.993	0.668	0.563	2e-75

>gi|94449066|gb|ABF19057.1| plastid Tic40 [Ricinus communis]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 233/323 (72%), Gaps = 32/323 (9%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTT--PYPAAS---------- 48
           MQQA K MMNQMNTQN  F N AF  GS FPFP PPAS P +  P+P +S          
Sbjct: 142 MQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTPPASVPASSPPFPTSSTSRPATSPSY 201

Query: 49  -------------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSP 95
                        QP  T+D+ ATKVEAA+ TD       K E E+ +EPKKYAFVDVSP
Sbjct: 202 PTSSASTSPSVASQPAVTVDVSATKVEAASVTDA------KDEAEITKEPKKYAFVDVSP 255

Query: 96  EETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVD 154
           EET  KS F + ED+ ETS+SKD Q  P+  QNGAA N  A    G QS +K G  L+V+
Sbjct: 256 EETFPKSPFKSNEDILETSTSKDTQFNPEVLQNGAASNQGAADFTGSQSTRKAGSGLSVE 315

Query: 155 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVL 214
            LEK+MEDP VQKMVYP LPEEMRNP++FK MLQNP+YR+QL+EML+ M  +GE+D R++
Sbjct: 316 ALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPQYRQQLEEMLNNMSGTGEWDNRMM 375

Query: 215 DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNI 274
           DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANPEIA+ FQ+PRVQ AIM+CSQNP++I
Sbjct: 376 DSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQQAIMDCSQNPLSI 435

Query: 275 IKYQNDKEVMSVITKIAELFPGV 297
            KYQNDKEVM V  KI+ELFPGV
Sbjct: 436 AKYQNDKEVMDVFNKISELFPGV 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582251|ref|XP_002531917.1| conserved hypothetical protein [Ricinus communis] gi|223528427|gb|EEF30461.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 233/323 (72%), Gaps = 32/323 (9%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTT--PYPAAS---------- 48
           MQQA K MMNQMNTQN  F N AF  GS FPFP PPAS P +  P+P +S          
Sbjct: 147 MQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTPPASVPASSPPFPTSSTSRPATSPSY 206

Query: 49  -------------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSP 95
                        QP  T+D+ ATKVEAA+ TD       K E E+ +EPKKYAFVDVSP
Sbjct: 207 PTSSASTSPSVASQPAVTVDVSATKVEAASVTDA------KDEAEITKEPKKYAFVDVSP 260

Query: 96  EETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVD 154
           EET  KS F + ED+ ETS+SKD Q  P+  QNGAA N  A    G QS +K G  L+V+
Sbjct: 261 EETFPKSPFKSNEDILETSTSKDTQFNPEVLQNGAASNQGAADFTGSQSTRKAGSGLSVE 320

Query: 155 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVL 214
            LEK+MEDP VQKMVYP LPEEMRNP++FK MLQNP+YR+QL+EML+ M  +GE+D R++
Sbjct: 321 ALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPQYRQQLEEMLNNMSGTGEWDNRMM 380

Query: 215 DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNI 274
           DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANPEIA+ FQ+PRVQ AIM+CSQNP++I
Sbjct: 381 DSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQQAIMDCSQNPLSI 440

Query: 275 IKYQNDKEVMSVITKIAELFPGV 297
            KYQNDKEVM V  KI+ELFPGV
Sbjct: 441 AKYQNDKEVMDVFNKISELFPGV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5531416|emb|CAB50925.1| translocon Tic40 [Pisum sativum]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/313 (61%), Positives = 234/313 (74%), Gaps = 20/313 (6%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP------------YPAAS 48
           MQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP              +AS
Sbjct: 128 MQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQATSTRSAS 187

Query: 49  QPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNF 107
           Q   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDVSPEET+QK++F+ F
Sbjct: 188 QSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDVSPEETVQKNAFERF 243

Query: 108 EDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQ 166
           +DV E+SS K+A+ P + SQNG  F    G   G  S +K    L+VD LEK+MEDP VQ
Sbjct: 244 KDVDESSSFKEARAPAEASQNGTPFKQGFGDSPGSPSERKSA--LSVDALEKMMEDPTVQ 301

Query: 167 KMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE 226
           +MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R++D+LKNFDLNS +
Sbjct: 302 QMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPD 361

Query: 227 VKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSV 286
           VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM+I+KYQNDKEVM V
Sbjct: 362 VKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKEVMDV 421

Query: 287 ITKIAELFPGVTG 299
             KI+ELFPGV+G
Sbjct: 422 FNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569945|ref|XP_003553154.1| PREDICTED: uncharacterized protein LOC100790904 [Glycine max]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 232/310 (74%), Gaps = 22/310 (7%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS------------ 48
           MQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+            
Sbjct: 129 MQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATTQSRAPSASSAS 188

Query: 49  QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFE 108
           Q   T+DIPA KVE A  T+V      K E EVK EPKK AFVDVSPEET+Q+S F++F+
Sbjct: 189 QSTITVDIPAAKVEVAPTTNV------KDEVEVKNEPKKIAFVDVSPEETVQESPFESFK 242

Query: 109 DVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQK 167
           D  E+SS K+A+ P + SQNGA  N   G   G QS KK    L+VD LEK+MEDP VQK
Sbjct: 243 D-DESSSVKEARVPDEVSQNGAPSNQGFGDFPGSQSTKKS--VLSVDALEKMMEDPTVQK 299

Query: 168 MVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEV 227
           MVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+LKNFDLNS EV
Sbjct: 300 MVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDSRMMDTLKNFDLNSPEV 359

Query: 228 KQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVI 287
           KQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI KYQNDKEVM V 
Sbjct: 360 KQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITKYQNDKEVMDVF 419

Query: 288 TKIAELFPGV 297
            KI+ELFPGV
Sbjct: 420 NKISELFPGV 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75150408|sp|Q8GT66.1|TIC40_PEA RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=PsTIC40; Flags: Precursor gi|26000725|gb|AAN75219.1| chloroplast protein translocon component Tic40 precursor [Pisum sativum]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 233/313 (74%), Gaps = 20/313 (6%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP------------YPAAS 48
           MQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP              +AS
Sbjct: 128 MQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQATSTRSAS 187

Query: 49  QPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNF 107
           Q   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDVSPEET+QK++F+ F
Sbjct: 188 QSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDVSPEETVQKNAFERF 243

Query: 108 EDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQ 166
           +DV E+SS K+A+ P + SQNG  F    G      S +K    L+VD LEK+MEDP VQ
Sbjct: 244 KDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LSVDALEKMMEDPTVQ 301

Query: 167 KMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE 226
           +MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R++D+LKNFDLNS +
Sbjct: 302 QMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPD 361

Query: 227 VKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSV 286
           VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM+I+KYQNDKEVM V
Sbjct: 362 VKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKEVMDV 421

Query: 287 ITKIAELFPGVTG 299
             KI+ELFPGV+G
Sbjct: 422 FNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539740|ref|XP_003538352.1| PREDICTED: uncharacterized protein LOC100781154 [Glycine max]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 195/310 (62%), Positives = 232/310 (74%), Gaps = 22/310 (7%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS------------ 48
           MQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+            
Sbjct: 126 MQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATTQSRAPSASSAS 185

Query: 49  QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFE 108
           Q   T+D+PA KVEAA  T+V      K E E+K EPKK AFVDVSPEET+++S F++F+
Sbjct: 186 QSTITVDLPAAKVEAAPTTNV------KDEVELKNEPKKIAFVDVSPEETVRESPFESFK 239

Query: 109 DVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQK 167
           D  E+SS K+A  P + SQNGA  N   G   G QS KK    L+VD LEK+MEDP VQK
Sbjct: 240 D-DESSSVKEAWVPDEVSQNGAPSNLGFGDFPGSQSTKKSA--LSVDALEKMMEDPTVQK 296

Query: 168 MVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEV 227
           MVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+LKNFDLNS EV
Sbjct: 297 MVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDNRMMDTLKNFDLNSPEV 356

Query: 228 KQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVI 287
           KQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI KYQNDKEVM V 
Sbjct: 357 KQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITKYQNDKEVMDVF 416

Query: 288 TKIAELFPGV 297
            KI+ELFPGV
Sbjct: 417 NKISELFPGV 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079472|ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|222848840|gb|EEE86387.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/303 (64%), Positives = 232/303 (76%), Gaps = 8/303 (2%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTT-PYPAASQPRFTMDIPAT 59
           MQQA K +  QMNTQN  F N AF    PFPF  PPAS P+T P PAASQP  T+DIPAT
Sbjct: 131 MQQAFKSLTEQMNTQNNQF-NPAFSARPPFPFSPPPASHPSTSPSPAASQPAITVDIPAT 189

Query: 60  KVEAATATDVEGKKEVK--GETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSK 117
           KVEAA  TDV  +KE     E ++KEE KKYAFVD+SPEET   + F + ED  ETSSSK
Sbjct: 190 KVEAAPTTDVGKEKETDFLEERKIKEETKKYAFVDISPEETSLNTPFSSVEDDNETSSSK 249

Query: 118 DAQPPKDS-QNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEE 176
           D +  K   QNGAAF    G+  G QS +    FL+V+ LEK+MEDP +QKMVYP LPEE
Sbjct: 250 DVEFAKKVFQNGAAFKQGPGAAEGSQSTRP---FLSVEALEKMMEDPTMQKMVYPYLPEE 306

Query: 177 MRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGL 236
           MRNP +FK MLQNP+YR+QL++ML+ M  SG++D +++DSLK+FDLNSAEVKQQF+QIGL
Sbjct: 307 MRNPTTFKWMLQNPQYRQQLEDMLNNMGGSGKWDSQMMDSLKDFDLNSAEVKQQFDQIGL 366

Query: 237 TPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
           TPEEVI+K+MANP++A+ FQ+PRVQ AIMECSQNP+NI KYQNDKEVM V  KI+ELFPG
Sbjct: 367 TPEEVISKIMANPDVAMAFQNPRVQQAIMECSQNPINITKYQNDKEVMDVFNKISELFPG 426

Query: 297 VTG 299
           +TG
Sbjct: 427 MTG 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462371|ref|XP_004148914.1| PREDICTED: protein TIC 40, chloroplastic-like [Cucumis sativus]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/300 (59%), Positives = 219/300 (73%), Gaps = 11/300 (3%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATK 60
           MQQA K MM+QMN+QN P  N     GSPFP P   A+G TT  P+ S+P  ++D+ ATK
Sbjct: 128 MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATG-TTISPSVSEPAVSIDVTATK 186

Query: 61  VEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ 120
           VE    T+V+ + E         E KK+AFVDVSPEET QKS F   ED  +   SK AQ
Sbjct: 187 VEEEPVTNVKSRTE-------NMEAKKFAFVDVSPEETDQKSPFK--EDATDADVSKSAQ 237

Query: 121 PPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRN 179
           P ++  QNGAA         G Q ++K G  L+V+ +EK+MEDP VQKM+YP LPEEMRN
Sbjct: 238 PTQELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRN 297

Query: 180 PASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPE 239
           P +FK M+QNP YR+QL+EML+ M  S ++DGR++DSLKNFDL+S EVKQQF+QIGLTPE
Sbjct: 298 PETFKWMMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPE 357

Query: 240 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 299
           EVI+K+MANPEIA+ FQ+PRVQAAIM+CSQNP++I KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 358 EVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSG 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460309|ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera] gi|296089465|emb|CBI39284.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 218/315 (69%), Gaps = 22/315 (6%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQG--------------SPFPFPNPPASGPTT-PYP 45
           MQQA K +M QM++QN  F    F  G              +    P    SGPTT P  
Sbjct: 126 MQQAFKTLMGQMDSQNNQFNTTTFSPGSPFPFPMPPPSGPSTSHSGPTTSPSGPTTSPST 185

Query: 46  AASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFD 105
            A+Q   T+D+PATKVE   ATDV      K + E K E  KYAFVDVSPEETLQ+S F+
Sbjct: 186 VAAQSMVTVDVPATKVETPPATDV------KDDIEKKNEQNKYAFVDVSPEETLQESPFE 239

Query: 106 NFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQ 164
           NFE+  ETSSSKDAQ     SQNG       G     QS +    FL+VD LEK+MEDP 
Sbjct: 240 NFEESTETSSSKDAQFSAGVSQNGTPPRPGMGVSEDSQSTRNANPFLSVDALEKMMEDPT 299

Query: 165 VQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNS 224
           VQKMVYP LPEEMRNP +FK MLQNP+YR+QLQ+ML+ M    E+D R++D+LKNFDL+S
Sbjct: 300 VQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLQDMLNNMGGGAEWDNRMMDNLKNFDLSS 359

Query: 225 AEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVM 284
            EVKQQF+QIGLTPEEVI+K+MANP++AL FQ+PR+QAAIM+CSQNP++I KYQNDKEVM
Sbjct: 360 PEVKQQFDQIGLTPEEVISKIMANPDVALAFQNPRIQAAIMDCSQNPLSIAKYQNDKEVM 419

Query: 285 SVITKIAELFPGVTG 299
            V  KI+ELFPGV+G
Sbjct: 420 DVFNKISELFPGVSG 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807687|ref|XP_002871727.1| hypothetical protein ARALYDRAFT_488521 [Arabidopsis lyrata subsp. lyrata] gi|297317564|gb|EFH47986.1| hypothetical protein ARALYDRAFT_488521 [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/314 (56%), Positives = 220/314 (70%), Gaps = 15/314 (4%)

Query: 1   MQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRF--TMDIPA 58
           MQ A+K MMNQMNTQN  F N  FP GSPFPFP PP + P +    +       T+D+ A
Sbjct: 134 MQTAMKTMMNQMNTQNSQFNNPGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVDVTA 193

Query: 59  TKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFE 108
           TKV+           A D+E  K   V   ++ K+E K YAF D+SPEET ++S F N+ 
Sbjct: 194 TKVDTPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFSNYA 253

Query: 109 DVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQV 165
           +V ETSS K+ +  +D  QNGA  A    A   F      K G  L+V+ LEK+MEDP V
Sbjct: 254 EVSETSSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGAGLSVEALEKMMEDPTV 313

Query: 166 QKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSA 225
           QKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D R+ D+LKNFDLNS 
Sbjct: 314 QKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSP 373

Query: 226 EVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMS 285
           EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM 
Sbjct: 374 EVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMD 433

Query: 286 VITKIAELFPGVTG 299
           V  KI++LFPG+TG
Sbjct: 434 VFNKISQLFPGMTG 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2174155	447	TIC40 "translocon at the inner	0.704	0.474	0.627	9.7e-74
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.176	0.146	0.415	1.2e-05
RGD|621312	368	St13 "suppression of tumorigen	0.182	0.149	0.363	8.2e-05
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.182	0.149	0.345	0.00031
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.182	0.149	0.345	0.00031
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.182	0.148	0.345	0.00031
WB|WBGene00011735	422	hip-1 [Caenorhabditis elegans	0.192	0.137	0.379	0.00065
UNIPROTKB|Q8NFI4	369	ST13P5 "Putative protein FAM10	0.182	0.149	0.345	0.00088

TAIR|locus:2174155 TIC40 "translocon at the inner envelope membrane of chloroplasts 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 135/215 (62%), Positives = 168/215 (78%)

Query:    88 YAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSA 144
             YAF D+SPEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F     
Sbjct:   233 YAFEDISPEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGG 292

Query:   145 KKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 204
              K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M 
Sbjct:   293 GKGGPGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMS 352

Query:   205 ESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAI 264
              SGE+D R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+
Sbjct:   353 GSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAAL 412

Query:   265 MECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 299
             MECS+NPMNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct:   413 MECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0031897 "Tic complex" evidence=TAS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 294
             + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct:   305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

GO:0005737 "cytoplasm" evidence=IEA

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
             + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct:   312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

WB|WBGene00011735 hip-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 113 (44.8 bits), Expect = 0.00065, P = 0.00065
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 299
             I ++ ++PEIA   Q P V  A+M+  QNP N++KY N+ +V  +I+K+     G+ G
Sbjct:   320 IEQLFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPKVAKLISKLQSKGAGMPG 377

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q8NFI4 ST13P5 "Putative protein FAM10A5" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00088, P = 0.00088
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query:   242 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 296
             + +++++PE     Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      301       257   0.00086  114 3  11 23  0.39    34
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  159 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.55u 0.14s 23.69t   Elapsed:  00:00:01
  Total cpu time:  23.55u 0.14s 23.69t   Elapsed:  00:00:01
  Start:  Sat May 11 09:01:53 2013   End:  Sat May 11 09:01:54 2013

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMD5	TIC40_ARATH	No assigned EC number	0.5636	0.9933	0.6689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	5e-11

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 151 LTVDTLEKLMED-PQVQKMVYPSLPEE--MRNPASFKLMLQNPEYRKQLQEMLDGMCESG 207
           LT + LE L+E  PQVQ+ + P LPE   MRNP   + ML++P++++ L  +   +  SG
Sbjct: 7   LTPENLEPLLESPPQVQERLLPHLPEGDLMRNPEDLREMLRSPQFKQALASLSQAL-RSG 65

Query: 208 EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKM 245
                    L    LN  EV   F   G   E  +  +
Sbjct: 66  GLP----SLLSQLGLNPEEV---FAANGGDVEAFLEAL 96

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.82
smart00727	41	STI1 Heat shock chaperonin-binding motif.	98.58
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.04
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	94.34
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	92.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	91.21
KOG3037	330	consensus Cell membrane glycoprotein [General func	91.06

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-31  Score=256.28  Aligned_cols=210  Identities=35%  Similarity=0.460  Sum_probs=181.2

Q ss_pred             cCCCcccccccCChhHhhhhcccccchhhcccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCc--cccCccccHHHHHH
Q 022173           82 KEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQP-PKDSQNGAAFNYNAGSPFGGQSA--KKEGRFLTVDTLEK  158 (301)
Q Consensus        82 ~~~~kk~af~dv~~ee~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  158 (301)
                      +.+-+-++|-+..+.++-+...|........+...+.+.- ..+.+++..-..++-...--+..  ...+.-......++
T Consensus       165 ~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e  244 (377)
T KOG1308|consen  165 NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE  244 (377)
T ss_pred             chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence            4456789999999999999999998888877777766653 35566655544444333322222  34566688999999


Q ss_pred             hhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHHHhcCCCh
Q 022173          159 LMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTP  238 (301)
Q Consensus       159 Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mgg~g~~~~~m~d~l~~~D~Nn~Ei~e~~~q~G~tp  238 (301)
                      ++.++.+++++|+|+|++|+|+++++|+++|++||+++.+|.+.|+|++.|+-+|.+.|++.+.|.. +.+++.+.|   
T Consensus       245 ~~~~~r~er~r~~r~~~e~~~~e~~k~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~-~~~~p~~~g---  320 (377)
T KOG1308|consen  245 REIKERVERVRYAREPEEMANPEEFKRMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSP-VKQQPNQIG---  320 (377)
T ss_pred             hcccccccccccccchhhhcChhhhhhhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCc-cccCCCccc---
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 777767766   


Q ss_pred             HHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCC
Q 022173          239 EEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVT  298 (301)
Q Consensus       239 eE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a~FgG~~  298 (301)
                         +.+||.||||+++||||+|+++|+||++||+|++||++||+||++|.||+++|+|+.
T Consensus       321 ---i~ki~~dpev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~~kf~g~~  377 (377)
T KOG1308|consen  321 ---ISKILSDPEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLSQKFPGMT  377 (377)
T ss_pred             ---HhhhcCchHHHHhhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHHhhcCCCC
Confidence               899999999999999999999999999999999999999999999999999999863

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1e-08  Score=103.60  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=68.7

Q ss_pred             ccCCCChHHHHHHH-----H-hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHH
Q 022173          218 KNFDLNSAEVKQQF-----E-QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIA  291 (301)
Q Consensus       218 ~~~D~Nn~Ei~e~~-----~-q~G~tpeE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~  291 (301)
                      ..+|+++.|+.+++     + +...+++++.+++|.||||++||+||.++.||.++++|| +.++|+.||.|+.+|+||+
T Consensus       453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~  531 (539)
T KOG0548|consen  453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLI  531 (539)
T ss_pred             HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHH
Confidence            45679999999988     2 456999999999999999999999999999999999999 8899999999999999998


Q ss_pred             Hh
Q 022173          292 EL  293 (301)
Q Consensus       292 a~  293 (301)
                      +.
T Consensus       532 ~~  533 (539)
T KOG0548|consen  532 SA  533 (539)
T ss_pred             Hh
Confidence            73

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=98.58  E-value=6.9e-08  Score=65.65  Aligned_cols=40  Identities=30%  Similarity=0.592  Sum_probs=38.2

Q ss_pred             CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CHHHHHHH
Q 022173          248 NPEIALGFQSPRVQAAIMECSQNPMNIIKYQN-DKEVMSVI  287 (301)
Q Consensus       248 DPEI~aamQDPeV~aALqDi~qNPaai~KYms-NPkVm~~I  287 (301)
                      |||++.+++||.|+.+++++++||..+.+|+. ||.++.+|
T Consensus         1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence            79999999999999999999999999999999 99998764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.04  E-value=0.00054  Score=46.52  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             HHHHhhhCHHHHHhhcCCCccccCCHHHHHHHhh-ChHHHHHH
Q 022173          155 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-NPEYRKQL  196 (301)
Q Consensus       155 ~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~Mlq-NP~~r~qL  196 (301)
                      .+..+|+||.+++++--    .++||+.+..|++ ||++++.+
T Consensus         3 ~~~~~l~~P~~~~~l~~----~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        3 EMALRLQNPQVQSLLQD----MQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             HHHHHHcCHHHHHHHHH----HHHCHHHHHHHHHhCHHhHhhC
Confidence            45678889999987764    8889999999999 99997653

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=94.34  E-value=0.081  Score=54.21  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=24.0

Q ss_pred             cCCHHHHhhcCCHHHHHHHHHHhhChH
Q 022173          246 MANPEIALGFQSPRVQAAIMECSQNPM  272 (301)
Q Consensus       246 M~DPEI~aamQDPeV~aALqDi~qNPa  272 (301)
                      |.+|+++.+|.+|+++.+|+.|++.-.
T Consensus       375 mq~p~~~~~~~np~a~~ai~qiqq~~~  401 (493)
T KOG0010|consen  375 MQNPDVLRAMSNPRAMQAIRQIQQGLQ  401 (493)
T ss_pred             ccCchHhhhhcChHHHHHHHHHHHHHH
Confidence            779999999999999999999987544

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=92.83  E-value=0.22  Score=51.12  Aligned_cols=35  Identities=31%  Similarity=0.670  Sum_probs=22.1

Q ss_pred             cHHHHHHhhhCHHHHHhhcCCCccccCCHHHHH-HHhhChHHHH
Q 022173          152 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK-LMLQNPEYRK  194 (301)
Q Consensus       152 ~~~~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk-~MlqNP~~r~  194 (301)
                      +-+.+..||+||-+|.        .|+||+.+. .++.||++++
T Consensus       155 npe~~~~~m~nP~vq~--------ll~Npd~mrq~I~anPqmq~  190 (493)
T KOG0010|consen  155 NPEALRQMMENPIVQS--------LLNNPDLMRQLIMANPQMQD  190 (493)
T ss_pred             CHHHHHHhhhChHHHH--------HhcChHHHHHHHhcCHHHHH
Confidence            3466777777777774        345666666 4566776633

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.21  E-value=0.55  Score=48.79  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=60.5

Q ss_pred             cCCCChHHHHHHHHhcC---------CChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHH
Q 022173          219 NFDLNSAEVKQQFEQIG---------LTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK  289 (301)
Q Consensus       219 ~~D~Nn~Ei~e~~~q~G---------~tpeE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqK  289 (301)
                      .+|++|..+..++.+.-         .+.-.+++++-+||.....++||.+..+|+.+..||.++.-|++||-+|..+--
T Consensus        98 ~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~  177 (539)
T KOG0548|consen   98 EKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ  177 (539)
T ss_pred             hcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH
Confidence            45677887777762211         122357888999999999999999999999999999999999999999999887


Q ss_pred             HHH
Q 022173          290 IAE  292 (301)
Q Consensus       290 L~a  292 (301)
                      |..
T Consensus       178 l~~  180 (539)
T KOG0548|consen  178 LKG  180 (539)
T ss_pred             Hhc
Confidence            754

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=91.06  E-value=0.33  Score=47.72  Aligned_cols=54  Identities=20%  Similarity=0.506  Sum_probs=48.5

Q ss_pred             cccHHHHHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 022173          150 FLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM  203 (301)
Q Consensus       150 ~~~~~~l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~m  203 (301)
                      .+.-+.+..++.+|-+|+=++||||+---+.+-+.-++++|||+|+|.-+....
T Consensus       228 vL~~e~v~~vl~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL  281 (330)
T KOG3037|consen  228 VLKPEAVAPVLANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQAL  281 (330)
T ss_pred             hcChHHHHHHhhCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHH
Confidence            456789999999999999999999998888888889999999999998877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
2lnm_A	62	Solution Structure Of The C-Terminal Np-Repeat Doma		9e-23

>pdb|2LNM|A Chain A, Solution Structure Of The C-Terminal Np-Repeat Domain Of Tic40, A Co- Chaperone During Protein Import Into Chloroplasts Length = 62

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 57/62 (91%)
Query: 238 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 297
           PEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM V  KI++LFPG+
Sbjct: 1   PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM 60
Query: 298 TG 299
           TG
Sbjct: 61  TG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	6e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 52/359 (14%), Positives = 107/359 (29%), Gaps = 128/359 (35%)

Query: 49  QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKK----YAFVDV---SPEETLQK 101
           +  F  +     V+    + +  K+E+     +                     EE +QK
Sbjct: 26  EDAFVDNFDCKDVQDMPKS-ILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 102 SSF------DNFEDVKETSSSKDAQPPKDSQNGAAFN------YNAGSPF---------- 139
             F       N++ +     ++  QP   S     +       YN    F          
Sbjct: 82  --FVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 140 ----------------------GG-----------QSAKKEGRF------LTV---DTLE 157
                                  G            S K + +       L +   ++ E
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 158 KLMEDPQVQKMVY------PSLPEEMRNP--------ASFKLMLQNPEYRKQLQEMLDGM 203
            ++E   +QK++Y       S  +   N         A  + +L++  Y   L  +L  +
Sbjct: 197 TVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV 253

Query: 204 CESGE---FDG--RVL---------DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMAN- 248
             +     F+   ++L         D L      +  +      + LTP+EV + ++   
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 249 --------PEIALGFQSPRVQAAIMECSQNPMNII---KYQNDKEVMSVI-TKIAELFP 295
                   P   L   +PR  + I E  ++ +      K+ N  ++ ++I + +  L P
Sbjct: 311 LDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 30/114 (26%)

Query: 151 LTVDTLEKLMEDPQVQKMVYPSLPEEMR--NP-------ASFKLMLQNPEYRKQLQ-EML 200
           LT D ++ L+   +        LP E+   NP        S +  L   +  K +  + L
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 201 DGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEV-ITKMMANPEIAL 253
             + ES         SL    L  AE ++ F+++ + P    I      P I L
Sbjct: 356 TTIIES---------SLNV--LEPAEYRKMFDRLSVFPPSAHI------PTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 35/233 (15%), Positives = 75/233 (32%), Gaps = 61/233 (26%)

Query: 45  PAASQPRFTM--------DIPATKV-----EAATATDVEG-KKEVKGETEVKEEPKKYAF 90
           PA  +  F           IP T +          +DV     ++   + V+++PK+   
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 91  ----------VDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFG 140
                     V +  E  L +S  D++   K   S     P  D      +++      G
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSH-----IG 478

Query: 141 --GQSAKKEGRFLTVDTLEKL------MEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEY 192
              ++ +   R         +      +E    QK+ + S             + Q   Y
Sbjct: 479 HHLKNIEHPERM---TLFRMVFLDFRFLE----QKIRHDSTAWNASGS-ILNTLQQLKFY 530

Query: 193 RKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE--VKQQFE---QIGLTPEE 240
           +         +C++     R+++++ +F     E  +  ++    +I L  E+
Sbjct: 531 KPY-------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 230 QFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK 289
           Q      TPEE   + M +PE+A   Q P +Q+ + +  QNP  + ++  + EV   I  
Sbjct: 1   QPGTSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQT 60

Query: 290 IAE 292
           +  
Sbjct: 61  LIA 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	99.82
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.77
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.33
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	97.25
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	96.55
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	95.49
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	94.09
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	93.11
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	85.62

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=99.82  E-value=2.5e-20  Score=137.33  Aligned_cols=62  Identities=73%  Similarity=1.238  Sum_probs=60.0

Q ss_pred             hHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCCC
Q 022173          238 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG  299 (301)
Q Consensus       238 peE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a~FgG~~g  299 (301)
                      |+++++||++||||+++|+||+|+++|+||++||+++++|++||+|+.+|+||.++|||.+|
T Consensus         1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~~   62 (62)
T 2lnm_A            1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG   62 (62)
T ss_dssp             CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCCC
T ss_pred             CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999876

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.1e-19  Score=136.16  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=58.1

Q ss_pred             hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 022173          233 QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE  292 (301)
Q Consensus       233 q~G~tpeE~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~KYmsNPkVm~~IqKL~a  292 (301)
                      ..|++++|++.++|+||||++||+||+|+++|+||++||++++||++||+|+++|+||++
T Consensus         4 ~~~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~   63 (71)
T 2llw_A            4 TSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA   63 (71)
T ss_dssp             TCCSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999976

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=2.3e-13  Score=102.79  Aligned_cols=52  Identities=21%  Similarity=0.416  Sum_probs=49.8

Q ss_pred             HHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCHHHHHHHHHHHH
Q 022173          241 VITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVMSVITKIAE  292 (301)
Q Consensus       241 ~~skiM~DPEI~aamQDPeV~aALqDi~qNPaai~K-YmsNPkVm~~IqKL~a  292 (301)
                      .+.++++|||++++|+||+|+++|+||++||++|++ |++||+|+.+|.||..
T Consensus        15 ~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g   67 (71)
T 2llv_A           15 LIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG   67 (71)
T ss_dssp             CHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence            578999999999999999999999999999999999 9999999999999964

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=97.25  E-value=0.00032  Score=51.25  Aligned_cols=48  Identities=13%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             HHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCC
Q 022173          156 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESG  207 (301)
Q Consensus       156 l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~mgg~g  207 (301)
                      +..+|+||+|++++.-    .++||..+..+++||.+++.|+.+++-+||-+
T Consensus        14 ~~~~m~dP~~~~~lq~----i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~   61 (62)
T 2lnm_A           14 VAMAFQNPRVQAALME----CSENPMNIMKYQNDKEVMDVFNKISQLFPGMT   61 (62)
T ss_dssp             HHHHTTSHHHHHHHHH----HTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHcCCHHHHHHHHH----HHHCHHHHHHHHhChHHHHHHHHHHHHhCCCC
Confidence            5567777777776665    88999999999999999999999999999855

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.0019  Score=49.06  Aligned_cols=43  Identities=28%  Similarity=0.570  Sum_probs=33.9

Q ss_pred             HHHhhhCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHh
Q 022173          156 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  202 (301)
Q Consensus       156 l~~Mm~nP~~Qqm~ypylPe~MRNp~tfk~MlqNP~~r~qL~~Ml~~  202 (301)
                      |..+|+||+|++++.-    .|+||..+..+|+||.+++.|+.+.+.
T Consensus        22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence            4456666666666655    788999999999999999999988764

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=95.49  E-value=0.004  Score=53.32  Aligned_cols=54  Identities=19%  Similarity=0.385  Sum_probs=46.0

Q ss_pred             ccccHHHHHHhhhCHHHHHhhcCCCccccC---CHHHHHHHhhChHHHHHHHHHHHh
Q 022173          149 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEMLDG  202 (301)
Q Consensus       149 ~~~~~~~l~~Mm~nP~~Qqm~ypylPe~MR---Np~tfk~MlqNP~~r~qL~~Ml~~  202 (301)
                      ..|+.+.|..+++||.+++-+++|||+--+   ..+-++..+..|||+|.|.-+=..
T Consensus        38 dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~A   94 (155)
T 2kqz_A           38 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAA   94 (155)
T ss_dssp             HHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHH
Confidence            346677888999999999999999998865   899999999999999998765333

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=94.09  E-value=0.037  Score=54.03  Aligned_cols=56  Identities=18%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             CccccHHHHHHhhhCHHHHHhhcCCCcccc---CCHHHHHHHhhChHHHHHHHHHHHhc
Q 022173          148 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEM---RNPASFKLMLQNPEYRKQLQEMLDGM  203 (301)
Q Consensus       148 ~~~~~~~~l~~Mm~nP~~Qqm~ypylPe~M---RNp~tfk~MlqNP~~r~qL~~Ml~~m  203 (301)
                      ...|+.+.|..++.||++++-+.+|||+.=   +..+-++..|..|||+|.|.-+=..+
T Consensus       293 ~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL  351 (411)
T 2kr0_A          293 ASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAAL  351 (411)
T ss_dssp             GGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            345778999999999999999999999853   37788888899999999997654443

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=85.62  E-value=0.2  Score=37.42  Aligned_cols=16  Identities=13%  Similarity=0.318  Sum_probs=9.7

Q ss_pred             hhChHHHHHHHHHHHh
Q 022173          187 LQNPEYRKQLQEMLDG  202 (301)
Q Consensus       187 lqNP~~r~qL~~Ml~~  202 (301)
                      |++|+|++.|+++.++
T Consensus        29 ~~DP~~~~~lq~i~~N   44 (71)
T 2llv_A           29 MKDPQLVAKLIGYKQN   44 (71)
T ss_dssp             HHSCTHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHHHHC
Confidence            3666666666666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00