Citrus Sinensis ID: 022188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIKKCL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEcccccccccccHHcccHHHHHcccccccHHHHHHcccEcccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccHcccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgervvdgdwkptspsngerTVVLLGrtgngksatgnsiLGRKAFkasagssgvtktcemkttvlkdgqvvnvidtpglfdlsagsefvGKEIVKCLGMAKDGIHAFLVVFSVtnrfsqeeetavhrlpnlfgknvFDYMIVVFTGGDDLEDHEKTLEDflghecpkpLKEILQLCDnrcvlfdnktkdeakGTEQVRQLLSLVNSVIvqnggqpytdELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYdmhmcssiksgnhfsncvikkcl
Flexible Loop (DISEMBL)
mgervvdgdwkptspsngertvvllgrtgngksatgnsilgrkafkasagssgvtktCEMKttvlkdgqvvnVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAvhrlpnlfgknVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVivqnggqpytdelkrgatelrdkkaevdslkeyskreisKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIksgnhfsncVIKKCL
Low Complexity Region (SEG)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIKKCL
Disordered region (IsUnstruct)
*****************************************************VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKT********QVRQLLSLVNSVIVQN************************************************IKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIK***
Disordered Region (DISOPRED)
*********************VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR********************************************************************HFSNCVIKKCL
Disordered Region (DISEMBL)
**********KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAF**********KTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIKKCL
Disordered Region (DISPRO)
*****************GERTVVLLGRTGNGKSAT*****GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIKKCL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIKKCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.857	0.730	0.507	2e-60
O81025	463	Putative protein PHLOEM P	no	no	0.784	0.509	0.474	8e-58
Q9NUV9	329	GTPase IMAP family member	yes	no	0.813	0.744	0.332	3e-37
Q8K3K9	310	GTPase IMAP family member	yes	no	0.654	0.635	0.403	3e-33
Q8NHV1	300	GTPase IMAP family member	no	no	0.691	0.693	0.336	2e-28
Q99JY3	219	GTPase IMAP family member	no	no	0.611	0.840	0.373	2e-28
Q8WWP7	306	GTPase IMAP family member	no	no	0.730	0.718	0.330	7e-27
Q8ND71	665	GTPase IMAP family member	no	no	0.641	0.290	0.379	4e-26
Q75N62	688	GTPase IMAP family member	no	no	0.598	0.261	0.4	6e-26
Q8BWF2	308	GTPase IMAP family member	no	no	0.641	0.626	0.35	4e-25

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/262 (50%), Positives = 172/262 (65%), Gaps = 4/262 (1%)

Query: 9   DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
           ++  + P   E  +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G
Sbjct: 33  EFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query: 69  QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
            ++NVIDTPGLFDLS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L
Sbjct: 92  PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
             LFG  + DY+IVVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREI 245
           D+ K T+QV +LL L++ V  QN   PYTDE+     E  ++ K E + L  K +S+ ++
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQL 271

Query: 246 SKLMGQMQESYEDRIKRMAEMV 267
           + LM ++Q   E  +K MAEM+
Sbjct: 272 AALMKELQIMNERNLKAMAEMM 293

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  224 bits (570), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 156/236 (66%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
            D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
           LL+ V +V  Q GG PYT +L R   E  D++   +     SK      + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQN 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 151/253 (59%), Gaps = 8/253 (3%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK    A+  
Sbjct: 144 RARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATG-AEQE 199

Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQE 254
            Q  QLL L+  V+ +N    YT+ + + A E  + + +  +++E  + E+ +   +++E
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE--EIQKQTQAMQELHRVELEREKARIRE 257

Query: 255 SYEDRIKRMAEMV 267
            YE++I+++ + V
Sbjct: 258 EYEEKIRKLEDKV 270

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 6/203 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILGRKAF +   +  +TK CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    KEI +C+ +   G HA L+V  +   ++ EE  A  +L ++F K    +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L    P+ L+E++    NR  LF+NK    A+  EQ RQLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206

Query: 202 SLVNSVIVQNGGQPYTDELKRGA 224
           +LV S++ +NGG+ +T+++   A
Sbjct: 207 TLVQSMVRENGGKYFTNKMYESA 229

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG+GKSAT N+ILG + F +   +  VTK C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                +   KEI +C+  +  G HA ++V  +  R+++EE+  V  +  +FGK+   +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           ++FT  ++LE    +  DF+  +    LK I++ C NRC  F N  K  +A+   QV++L
Sbjct: 129 ILFTRKEELEGQ--SFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185

Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
           + L+  ++  N G  ++D++ +   E   ++ EV
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKDTEERLKQREEV 219

Homo sapiens (taxid: 9606)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILG K F +   +  +TK CE + +   DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    +EI + + +   G HA L+V  +  R++ EE  A  ++ ++FGK    +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L  + PK  +E++    NR  LF+N+    A+  EQ  QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206

Query: 202 SLVNSVIVQN 211
           +LV S+ + +
Sbjct: 207 TLVQSMFLSS 216

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V+DTP +
Sbjct: 28  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86

Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++FG++V  
Sbjct: 87  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 145

Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
           +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A G E   
Sbjct: 146 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 199

Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
           QV QLL +V  +++++ G  Y++E+   A  LR    E + L+  ++R  +++
Sbjct: 200 QVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 251

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 10/203 (4%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--- 78
           +VL+GR+G GKSATGNSILG   F +   +  VTKT +       DGQ V V+DTP    
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           + D+      + +E+ +CL   + G   F++VF +  RF++E++TAV +L  +FG +   
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTK 558

Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           Y I++FT  +DL      LEDF+ +   K L+ I + C  R   F+NK   +A+ T QV+
Sbjct: 559 YAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QVK 615

Query: 199 QLLSLVNSVIVQNG--GQPYTDE 219
            LL+ VN +  ++G  G P+T E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHTQE 638

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 10/190 (5%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++LLGR+G GKSATGN+ILGR AF +   +  VT + +     L D Q V V+DTP  F 
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535

Query: 82  LSAGSE----FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
            + G+E     + +EI  CL + ++G+  F++V  +  RF+QE+E  V +L   F +N+ 
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
            YMIV+FT  +DL D +  L D+  +   K LK+IL+ C+ R   F+NK   E + T QV
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQET-QV 651

Query: 198 RQLLSLVNSV 207
           + LL + NS+
Sbjct: 652 KGLLKIANSL 661

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G++G GKSATGNSIL R AF++      VT+T + +T    +G+ + V+DTP +F+
Sbjct: 29  ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             A ++ + K+I  C  +   G H  L+V  +  RF+ E+  AV  +  +FG  V  +MI
Sbjct: 88  SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           V+FT  +DLE  EK+LE+F+ H   + L+ + Q C  R   F+N+   +E +G  Q+ +L
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG--QLAEL 202

Query: 201 LSLVNSVIVQNGGQPYTDEL 220
           ++LV  +  +  G  ++++L
Sbjct: 203 MALVRRLEQECEGSFHSNDL 222

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
255539412	339	aig1, putative [Ricinus communis] gi|223	0.940	0.834	0.672	1e-108
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.940	0.832	0.662	1e-107
296089429	345	unnamed protein product [Vitis vinifera]	0.940	0.820	0.662	1e-107
224146305	335	predicted protein [Populus trichocarpa]	0.887	0.797	0.672	1e-102
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.870	0.748	0.676	1e-101
363814318	336	uncharacterized protein LOC100807910 [Gl	0.887	0.794	0.667	1e-101
224136037	259	predicted protein [Populus trichocarpa]	0.843	0.980	0.687	4e-98
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.887	0.782	0.650	8e-94
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.880	0.770	0.608	2e-92
388500386	335	unknown [Lotus japonicus]	0.883	0.794	0.608	7e-91

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 226/287 (78%), Gaps = 4/287 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  +FDYMIVVFTGGD+LED+++TLED+LG ECP+PL+EIL LC NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDE K  EQV QLLSLVN VI +NGGQPYTD    ELK  A +LRD++ EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMC 283
           LK YSK EI +L  QM  SYE+++KR+ EMV   L    ++ +  + 
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLA 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/287 (66%), Positives = 232/287 (80%), Gaps = 4/287 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTD    ELK+GA +LRD+  EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMC 283
           L+ YSKREI  L  QM +SYE+++KR+ EMV   L     K +  + 
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLA 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/287 (66%), Positives = 232/287 (80%), Gaps = 4/287 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTD    ELK+GA +LRD+  EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMC 283
           L+ YSKREI  L  QM +SYE+++KR+ EMV   L     K +  + 
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLA 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 221/272 (81%), Gaps = 5/272 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+  SPSNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L LC+NR 
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
           VLF+NKTKD  KG EQV++LLSLVN VI QNGGQPY+DEL    ++G    R ++ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 237 LK-EYSKREISKLMGQMQESYEDRIKRMAEMV 267
           LK  +S  EIS+L  QM+  YED++KR+ +MV
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMV 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 221/266 (83%), Gaps = 4/266 (1%)

Query: 6   VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           +D DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            +GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++EEETA+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
             L  LFG  + DYMIVVFTGGD+LE++++TLED+LG ECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYS 241
           KTKDE K   QV+QLLS VN V+ +NGG+PYTDE    LK+GA EL +++ EVDSLK YS
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259

Query: 242 KREISKLMGQMQESYEDRIKRMAEMV 267
           K EI +   QMQ++Y++++KR+ EMV
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEMV 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 220/271 (81%), Gaps = 4/271 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           +TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EETA+  L  LFG  + DYMIVVFTGGD+LE++ +TLED+LG ECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDS 236
           VLFDNKTKDE K   QV+QLLS VN+V+ +NGG+PYTDE    LK+GA EL +++ EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMV 267
           LK YSK EI K   QMQ++Y+D++KR+ E+V
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 213/259 (82%), Gaps = 5/259 (1%)

Query: 13  TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
            SPSNG RTVVL+GRTGNGKSATGNSILG+KAFK+ A SSGVT TCE+++TVL DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
           VIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQEEE A+  L  LF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
           G  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L+LC+NR VLFDNKTKD  K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 193 GTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDSLK-EYSKREISK 247
             EQ+++LLSLVN VI QN GQPY+DEL    ++G    RD++ EV+SLK   S REIS+
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISE 240

Query: 248 LMGQMQESYEDRIKRMAEM 266
           L  QMQ  YE+++KR+ EM
Sbjct: 241 LKEQMQIQYEEQLKRVTEM 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 221/275 (80%), Gaps = 8/275 (2%)

Query: 1   MGERVVDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56
           MG   ++ DW+   TSP+NG   RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA LVVFSV  R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176
           FS EEE A+  L  LFG  + +YMIVVFTGGD+LE++E+TLED+LG  CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKA 232
            NRCVLFDNKTKDE +   QV+QLLSLVN +++QNGGQPY+D    ELK GA +LRD++ 
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMV 267
           EVDSL+ Y+++E+ +L  QM  SY++++KR+ EMV
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMV 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/271 (60%), Positives = 215/271 (79%), Gaps = 6/271 (2%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+    +NG RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6   MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ+++VIDTPGLFD SA  EF+G EIVKC+ MAKDGIHA LVV SV  RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           E+ AV  L   FG  + DYM++VFTGGDDLED+E+TLED+LG +CP+PLK+IL +C NR 
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           VLFDNK+KD  K  +Q++QLLSLVN V+  NGG+PYTD    ELK+GA +LR++  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMV 267
           L  YSK+EI +L  QMQ+SYE++++R+ E+V
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVV 274

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  339 bits (870), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 165/271 (60%), Positives = 214/271 (78%), Gaps = 5/271 (1%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG    D DW+ TS +N  RTVV +GRTGNGKSATGNSILG+K FK+ A S GVT +CE 
Sbjct: 1   MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
            T  L DGQ VNVIDTPGLFD+SAGS+FVGKEIV C+ +AKDGIHA +VVFSV  RFSQE
Sbjct: 61  HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           E TA+  L  LFG  ++DY +VVFTGGD+LE+ ++TLED+LG +CP+PLK++L LC+NR 
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
           +LFDNKTKDE K +EQV+QL S VN V+ QNGG+PYTD    ELK+GA +L +++++V+S
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239

Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMV 267
           L+ +S +EI +   Q +++Y+D++KR+AEMV
Sbjct: 240 LEGHSNKEILEYKKQAKQAYDDQLKRIAEMV 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.933	0.821	0.538	4.8e-78
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.817	0.696	0.526	2.1e-61
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.933	0.903	0.439	3.9e-60
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.906	0.812	0.464	9.3e-59
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.857	0.791	0.444	2.2e-57
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.926	0.835	0.416	1.2e-56
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.784	0.509	0.474	2.9e-55
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.817	0.817	0.45	1.7e-52
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.840	0.752	0.432	2.1e-52
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.817	0.624	0.440	1.2e-51

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 154/286 (53%), Positives = 211/286 (73%)

Query:     1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
             MG  +++ DW+  S SN +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
             +  V +DG ++NV+DTPGLFDLS  ++F+GKEIV+C+ +A+DGIHA L+VFSV  R ++E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSV-RRLAEE 124

Query:   121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
             E+T +  L  LFG  + DYMIVVFTGGD+LE++E+TLE++L   CP+ LKEIL +CDNR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
             VLF+NKT D+ K  EQV++LLSLV SV+ QN G+PY+DEL    +  A +LRD+K EV+ 
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244

Query:   237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHM 282
             L+ YS  EI +   Q+  SY+ ++ R+ EMV   L   A + +  +
Sbjct:   245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQL 290

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 131/249 (52%), Positives = 167/249 (67%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             LS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L  LFG  + DY+I
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164

Query:   142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
             VVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTKD+ K T+QV +LL
Sbjct:   165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224

Query:   202 SLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYED 258
              L++ V  QN   PYTDE+     E  ++ K E + L  K +S+ +++ LM ++Q   E 
Sbjct:   225 KLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNER 284

Query:   259 RIKRMAEMV 267
              +K MAEM+
Sbjct:   285 NLKAMAEMM 293

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 126/287 (43%), Positives = 182/287 (63%)

Query:    16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
             S     +VL+GRTGNGKSATGNS++G+K F + A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
             TPGLFDLS  +E++ KEIV+CL +A+ GIHA L+V S   R +QEEE  +  L  LFG  
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
             + DY++VVFTGGD LE+ ++TLED+LG +CP  +KE++++  NR V+ DNKT DE K  E
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192

Query:   196 QVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYSKREISKLMGQ 251
             QV +LLSLV+ +     G+ YTD+    +K  + +LR    E++S K YS+   +++  Q
Sbjct:   193 QVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMKNQ 251

Query:   252 MQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVIK 298
                 Y++ +K+M+E +   L   A   +  +    +  N   N  +K
Sbjct:   252 SLILYKENLKQMSEQLEKKLKDAAEAQEKALSKMTQENNEL-NLALK 297

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 129/278 (46%), Positives = 177/278 (63%)

Query:    10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ 69
             W+  S S   + VVL+GRTGNGKSATGNSI+GRK F++   + GVT  C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129
             ++NVIDTPGLFDL+  +EF+ KEIV CL +A++G+HA ++V S++ R SQEEE A+  L 
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145

Query:   130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKD 189
              LFG  + DY+IVVFT GD LED   TLED+L + CP+ LK +L+LC  R V+FDN+TKD
Sbjct:   146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKD 205

Query:   190 EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE--LRDKKAEVD-SLKEYSKREIS 246
             E    +QV+QLL  V ++  + GG P+TD + R   E   R K+ E +   K  +  E +
Sbjct:   206 EGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEEKA 265

Query:   247 KLMGQMQESYEDRIKRMAEMV--FFMLHVLASKYDMHM 282
              L  Q+  SY   +  MA M+   F     A++  M+M
Sbjct:   266 ALKKQLDMSYSQNMNMMALMMERIFKETAAANERQMNM 303

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 117/263 (44%), Positives = 174/263 (66%)

Query:     9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
             D +  S S   + +VL+GRTGNGKSATGNS++G++ F++   ++GVT  CE    V   G
Sbjct:     9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68

Query:    69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
               +NVIDTPGLFDLS  +E++ +EI+ CL +A+DG+HA ++V SV  R SQEEE  ++ L
Sbjct:    69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128

Query:   129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
               +FG  + DY++V+FTGGD+LE +  TL+D+L   CP+ LK +L+LC  R +LFDN+T 
Sbjct:   129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188

Query:   189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG----ATELRDKKAEVDSLKEYSKRE 244
             DE K  +QV++LL+ V ++     G P+TDE+ R     A  LR+++ EV+S K+ +  E
Sbjct:   189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES-KDLAAAE 247

Query:   245 ISKLMGQMQESYEDRIKRMAEMV 267
             I K     Q  ++  +  MAEM+
Sbjct:   248 IEKWKKHYQTEHDKNMNMMAEML 270

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 119/286 (41%), Positives = 182/286 (63%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKSATGNS++G+  F + A ++GVTKTC+    V   G  +NVIDTPGL
Sbjct:    14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
             FDLS  +EF+ KEI+ CL +A+ G+H  ++V SV  R +QEEE  +  L  LFG  + DY
Sbjct:    74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
             +IV+FTGGD+LE + +TL+D+    CP  LK +L LCD+R V+F+N TKD+ K  EQV+Q
Sbjct:   134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQ 193

Query:   200 LLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
              L+LV  V  +N G+P+      E+K     L+ +K  V++     + E++K+  ++Q  
Sbjct:   194 FLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAELAKMKKELQME 252

Query:   256 YEDRIKRMAEMVFFMLHVLASKYD--MHMCSSIKSGNHFSNCVIKK 299
             ++ R+ +M +MV  ML   ++ ++  + M +      H  N  ++K
Sbjct:   253 HDTRMSQMEDMVKNMLKETSAAHERMVSMLNENLENAHRENIDLRK 298

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 112/236 (47%), Positives = 156/236 (66%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
              D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
              IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
             LL+ V +V  Q GG PYT +L R   E  D++   +     SK      + +MQ++
Sbjct:   186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQN 241

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 117/260 (45%), Positives = 169/260 (65%)

Query:    15 PSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
             PS  E  R +VL+G TGNGKS+TGNS++G++ F          KTC+ KT    DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIIN 60

Query:    73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
             VIDTPGLFDLS  ++++ KEI+ CL +   G+HA ++V SV     +EEE A+++L  LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
             G  + DY++V+FTGGD LE   KTL+D+L   CP+ LK +L+LC  R VLF+NKT DE K
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVK 180

Query:   193 GTEQVRQLLSLVNSVIVQNGGQP-YTDEL----KRGATELRDKKAEVDSLKEYSKREISK 247
               EQV+QLL+ V ++   NGG+  +T+E     KR    L +++ EV S K+    E+ +
Sbjct:   181 KIEQVKQLLAHVEAIENLNGGKALFTEENDLNEKRQGEMLMEQEMEVQS-KKPENTEVEE 239

Query:   248 LMGQMQESYEDRIKRMAEMV 267
             +  Q++ SY  ++  MA+MV
Sbjct:   240 MKKQLEISYGQQMNMMAQMV 259

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/268 (43%), Positives = 178/268 (66%)

Query:     6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
             V+ DWKP      ERT+VLLGRTGNGKSATGNSILG+  F++ A    +TK C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+CL +AK GI A L+VFS+ NR ++EE++ +
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
               L  LFG  + DY+IVVFT  D LE  E TL+D+L  +CP+  +EIL+ CD+R VLFDN
Sbjct:   124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE-FQEILEECDDRKVLFDN 180

Query:   186 K-TKDEAKGTEQVRQLLSLVNSVIVQNGGQPY----TDELKRGATELRDKKAEVDSLKEY 240
                   +K   QV  LL+LV  +  +N G+ Y    + EL+     +++K+ +++ +K +
Sbjct:   181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGW 240

Query:   241 S-KREISKLMGQMQESYEDRIKRMAEMV 267
             S K+EIS++  ++++S+ + ++ + E +
Sbjct:   241 SSKQEISQMKKELEKSHNEMLEGIKEKI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 112/254 (44%), Positives = 174/254 (68%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             RT++L+GR+GNGKSATGNSILGRKAFK+   +SGVT  CE++++ L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
             F LS  +EF  +EI++C  + K+GI A L+VFS+ NR ++EE++A+  L  LFG  + DY
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVR 198
             MIVVFT  D LED   T E++L  + P   KEIL+ C++R VLF N++    ++  +QV+
Sbjct:   168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225

Query:   199 QLLSLVNSVIVQNGGQPYTD---ELKRGATELRDKKAEVDSLKE-YSKREISKLMGQMQE 254
             +LL+ V  +   NG     D   E++   T  + K+ E+  +K  Y+++E+ ++   M++
Sbjct:   226 ELLNYVEEIARLNGKSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDMEK 285

Query:   255 SYEDR-IKRMAEMV 267
             S+E++ +++M E V
Sbjct:   286 SFENQQLRQMMERV 299

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam04548	211	pfam04548, AIG1, AIG1 family	2e-94
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	5e-90
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-10
cd00880	161	cd00880, Era_like, E	1e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	2e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-05
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	0.003
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  277 bits (711), Expect = 2e-94
 Identities = 113/216 (52%), Positives = 157/216 (72%), Gaps = 9/216 (4%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGNSILGRKAF++   + GVTKTC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FDLS  ++F+ KEI++CL +A+ G HA L+V S+  RF++EEE A+  L  LFG  + DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
           MIVVFT  DDLED   +L+D+L   CP+ LKE+L+ C  R VLF+NK  D  +  EQV+Q
Sbjct: 119 MIVVFTRKDDLED--DSLDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 200 LLSLVNSVIVQNGGQPYTDEL----KRGATELRDKK 231
           LL+LV +++ +NGG+PYT++L    K     LR+K+
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEEGERLREKQ 211

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  266 bits (682), Expect = 5e-90
 Identities = 103/207 (49%), Positives = 144/207 (69%), Gaps = 6/207 (2%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGN+ILGRK F++   +SGVTKTC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FD S   E + KEI++CL ++  G HAFL+V  +  RF++EEE AV  L  LFG+ V D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPL-GRFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IV+FT GDDLE    +LED+L  +  + LK +L+ C  R V F+NK K   +  +QV++
Sbjct: 119 TIVLFTRGDDLEG--GSLEDYL-EDSCEALKRLLEKCGGRYVAFNNKAKGREQ-EQQVKE 174

Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATE 226
           LL+ V  ++ +NGG+PYT+E+   A E
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
          T+++LG+TG GKS+T NSI G +    SA  S   +  E+  TV  DG  +N+IDTPGL 
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81 DLSAGS 86
          +     
Sbjct: 91 ESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
           V++GR G GKS+  N++LG +  + S    G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                 F G    +   +   G    L+V   T+R S EE+  +  L  L  + +   +I
Sbjct: 60  ------FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PII 110

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           +V    D LE+ E              L+E+ ++          KT +   G +++ + L
Sbjct: 111 LVGNKIDLLEEREVEEL--------LRLEELAKILGVPVFEVSAKTGE---GVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82
            + GR   GKS+  N++LG+     S    G T+    K   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142
                   +E  +          A LV+  V +  +  EE A   L    GK V    ++
Sbjct: 60  GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDDLEDHEK 155
           V    D + + E+
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            +++LG++G GKSAT NSI G   F   A   G T   E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176

Query: 81  DLSAGSE 87
             S+ S+
Sbjct: 177 -KSSASD 182

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+GR   GKS   N++ G K    S    G T+  +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           +  A      +   + L   ++     L+V   +   ++++E  +  L  L  K     +
Sbjct: 58  E-GASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKK----PI 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 25/136 (18%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           T++++G+ G GKS+T NSI+G +    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40  TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFL------VVFSVTN----RFSQEEETAVHRLP 129
            +    ++            A + I  FL      V+  V      R    +   +  + 
Sbjct: 97  IEGGYIND-----------QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAIT 145

Query: 130 NLFGKNVFDYMIVVFT 145
           + FGK+++   +VV T
Sbjct: 146 DSFGKDIWRKSLVVLT 161

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTP 77
            + ++G    GKS   N++LG +        +GVT T  + T +   L  G  V ++DTP
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54

Query: 78  GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
           GL         + +  +           A + V S     ++ E   +  +    GK +F
Sbjct: 55  GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107

Query: 138 DYMIVVFTGGDDLEDHE 154
                V    D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           VVLLG +G GKS+  N         ++  +SG   T E   +V  +   + V D     D
Sbjct: 3   VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEET 123
                +        C+ +      A+++V+SVT+R  F +  E 
Sbjct: 62  GMWLEDS-------CMQV----GDAYVIVYSVTDRSSFEKASEL 94

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDT 76
           E  +V++G    GKS   N +LG K         G T+     T + +DG+    N++DT
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDT 58

Query: 77  PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136
            G  D  A      + +            + L VF +       EE    +   +     
Sbjct: 59  AGQEDYDAIRRLYYRAVE-----------SSLRVFDIVILVLDVEEILEKQTKEIIHHAE 107

Query: 137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPK----PLKEI-LQLCDNRCVLFD 184
               I++     DL D    L+  +     K    P+  +  +   N    F 
Sbjct: 108 SGVPIILVGNKIDLRD--AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDTPGL 79
           + +LG +G GKSA     L ++       +     + ++      DG+ V+  + DTPG 
Sbjct: 2   IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTI----DGEQVSLEIQDTPGQ 57

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
                        + + L  A      F++V+S+T+R S +  + + +L
Sbjct: 58  QQNEDPES-----LERSLRWA----DGFVLVYSITDRSSFDVVSQLLQL 97

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTP 77
          + TV L+G    GK+   N++ G  A +      GVT   E K   LK  G  + ++D P
Sbjct: 3  KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 78 GLFDLSAGSE 87
          G + L+A SE
Sbjct: 59 GTYSLTAYSE 68

Length = 653

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
COG1159	298	Era GTPase [General function prediction only]	99.93
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.89
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.88
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
PRK00089	292	era GTPase Era; Reviewed	99.85
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.84
PRK15494	339	era GTPase Era; Provisional	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.81
COG0218	200	Predicted GTPase [General function prediction only	99.81
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.8
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.8
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.79
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.79
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.79
PRK12298	390	obgE GTPase CgtA; Reviewed	99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.78
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.78
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.78
PRK03003	472	GTP-binding protein Der; Reviewed	99.77
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.77
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.76
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
COG3596	296	Predicted GTPase [General function prediction only	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.76
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.76
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.75
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.75
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.75
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.75
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.75
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.75
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.74
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.74
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.74
PRK12297	424	obgE GTPase CgtA; Reviewed	99.74
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.74
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.74
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.74
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.74
PRK04213	201	GTP-binding protein; Provisional	99.74
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.74
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.74
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.73
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.73
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.73
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.73
PRK00093	435	GTP-binding protein Der; Reviewed	99.73
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.73
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.73
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.73
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.73
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.72
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.72
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.72
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.72
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.72
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.72
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.72
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.72
PLN03110	216	Rab GTPase; Provisional	99.72
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.72
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.72
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.72
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.71
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.71
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.71
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.71
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.71
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.71
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.71
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.71
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.71
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.71
PRK11058	426	GTPase HflX; Provisional	99.71
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.71
COG2262	411	HflX GTPases [General function prediction only]	99.71
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.71
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.71
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.7
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.7
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.7
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.7
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.7
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.7
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.7
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.69
PLN03118	211	Rab family protein; Provisional	99.69
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.69
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.69
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.69
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.69
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.69
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.69
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.69
PTZ00369	189	Ras-like protein; Provisional	99.69
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.69
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.68
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.68
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.68
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.68
PTZ00133	182	ADP-ribosylation factor; Provisional	99.68
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.68
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.68
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.68
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.68
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.68
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.68
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
PLN00223	181	ADP-ribosylation factor; Provisional	99.67
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.67
PLN03108	210	Rab family protein; Provisional	99.67
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.67
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.67
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.67
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.67
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.67
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.67
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.67
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.66
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.66
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.66
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.66
PRK05306	787	infB translation initiation factor IF-2; Validated	99.66
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.66
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.66
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.66
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.65
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.65
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.65
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.65
PRK09866	741	hypothetical protein; Provisional	99.64
CHL00189	742	infB translation initiation factor 2; Provisional	99.64
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.64
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.64
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.64
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.63
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.63
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.63
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.63
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.62
PRK12317	425	elongation factor 1-alpha; Reviewed	99.62
CHL00071	409	tufA elongation factor Tu	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.62
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.62
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.62
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.62
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.62
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.61
PRK12736	394	elongation factor Tu; Reviewed	99.61
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.61
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.61
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.61
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.61
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.61
PRK00007	693	elongation factor G; Reviewed	99.6
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.6
PRK12735	396	elongation factor Tu; Reviewed	99.6
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.6
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.6
PRK05433	600	GTP-binding protein LepA; Provisional	99.59
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.59
PRK12739	691	elongation factor G; Reviewed	99.59
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.57
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.57
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.57
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.57
PRK10218	607	GTP-binding protein; Provisional	99.57
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.57
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.57
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.57
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.57
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.57
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.56
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.56
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.56
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.56
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.56
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.55
PRK00049	396	elongation factor Tu; Reviewed	99.55
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.55
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.55
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.55
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.54
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.53
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.53
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.53
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.53
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.53
PRK04004	586	translation initiation factor IF-2; Validated	99.52
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.52
PRK13351	687	elongation factor G; Reviewed	99.52
COG1163	365	DRG Predicted GTPase [General function prediction	99.52
COG0536	369	Obg Predicted GTPase [General function prediction	99.52
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.52
COG2229	187	Predicted GTPase [General function prediction only	99.51
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.51
KOG0394	210	consensus Ras-related GTPase [General function pre	99.51
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.51
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.5
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.5
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.5
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.5
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.5
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.48
PTZ00141	446	elongation factor 1- alpha; Provisional	99.48
PLN03126	478	Elongation factor Tu; Provisional	99.48
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.47
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.47
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.46
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.46
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.46
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.46
KOG1145	683	consensus Mitochondrial translation initiation fac	99.46
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.44
COG1100	219	GTPase SAR1 and related small G proteins [General	99.43
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.43
PLN00023	334	GTP-binding protein; Provisional	99.42
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.42
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.37
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.37
PTZ00258	390	GTP-binding protein; Provisional	99.35
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.34
PRK09602	396	translation-associated GTPase; Reviewed	99.33
PTZ00416	836	elongation factor 2; Provisional	99.33
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.32
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.32
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.3
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.29
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.29
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.28
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.27
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.26
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.26
PRK12740	668	elongation factor G; Reviewed	99.25
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.25
KOG0465	721	consensus Mitochondrial elongation factor [Transla	99.25
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.24
KOG0410	410	consensus Predicted GTP binding protein [General f	99.23
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.23
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.23
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.22
PRK07560	731	elongation factor EF-2; Reviewed	99.22
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.22
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.21
KOG0395	196	consensus Ras-related GTPase [General function pre	99.2
PRK13768	253	GTPase; Provisional	99.17
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.17
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.15
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.15
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.14
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.14
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.13
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.11
COG3523	1188	IcmF Type VI protein secretion system component Va	99.09
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.08
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.08
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.08
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.07
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.06
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.06
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.03
KOG0464	753	consensus Elongation factor G [Translation, riboso	99.02
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.02
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.01
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.01
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.0
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.98
PRK14845	1049	translation initiation factor IF-2; Provisional	98.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.97
PTZ00099	176	rab6; Provisional	98.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.94
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.94
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.93
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.93
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.91
KOG0090	238	consensus Signal recognition particle receptor, be	98.91
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.9
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.89
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.89
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.88
KOG2486	320	consensus Predicted GTPase [General function predi	98.88
PRK12288	347	GTPase RsgA; Reviewed	98.86
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.85
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.85
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.82
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.81
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.8
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.8
COG1162	301	Predicted GTPases [General function prediction onl	98.8
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.79
PRK12289	352	GTPase RsgA; Reviewed	98.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.79
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.78
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.77
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.77
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.72
PRK10416	318	signal recognition particle-docking protein FtsY;	98.72
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.71
PRK00098	298	GTPase RsgA; Reviewed	98.71
COG1161	322	Predicted GTPases [General function prediction onl	98.7
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.69
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.69
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.69
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.69
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.66
KOG0460	449	consensus Mitochondrial translation elongation fac	98.65
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.63
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.61
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.61
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.61
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.59
PRK14974	336	cell division protein FtsY; Provisional	98.59
KOG1673	205	consensus Ras GTPases [General function prediction	98.57
COG0488	530	Uup ATPase components of ABC transporters with dup	98.55
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.54
COG0488	530	Uup ATPase components of ABC transporters with dup	98.54
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.52
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.51
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.5
PRK13796	365	GTPase YqeH; Provisional	98.49
cd03112	158	CobW_like The function of this protein family is u	98.47
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.47
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.46
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.46
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.46
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.44
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.44
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.44
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.39
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.37
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.3
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.29
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.29
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.27
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.27
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.27
PRK10867	433	signal recognition particle protein; Provisional	98.27
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.27
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.24
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.2
KOG1143	591	consensus Predicted translation elongation factor	98.18
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.18
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.17
TIGR00959	428	ffh signal recognition particle protein. This mode	98.16
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.14
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.13
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.13
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.13
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.11
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.1
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.08
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.08
PRK11147	635	ABC transporter ATPase component; Reviewed	98.08
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.07
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.07
PRK01889	356	GTPase RsgA; Reviewed	98.06
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.06
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.06
KOG2484	435	consensus GTPase [General function prediction only	98.04
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.03
cd03246	173	ABCC_Protease_Secretion This family represents the	98.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.98
cd03114	148	ArgK-like The function of this protein family is u	97.98
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.97
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.96
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.95
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.95
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.94
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.93
COG4988	559	CydD ABC-type transport system involved in cytochr	97.93
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.93
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.92
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	97.92
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.9
COG4559	259	ABC-type hemin transport system, ATPase component	97.89
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.87
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.86
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.85
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.84
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.81
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.79
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.78
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.78
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.77
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.76
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.75
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.75
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.74
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.73
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.72
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.71
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.71
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.7
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.7
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.69
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.69
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.69
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.69
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.69
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.69
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.69
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.69
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.68
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.67
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.67
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.67
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.65
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.65
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.65
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.65
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.65
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.65
PRK13695	174	putative NTPase; Provisional	97.65
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.65
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.64
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.64
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.64
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.64
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.64
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.64
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.63
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.63
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.63
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.62
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.62
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.62
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.62
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.62
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.61
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.61
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.61
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.61
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.61
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.61
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.6
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.6
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.6
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.6
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.6
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.6
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.6
PRK10908	222	cell division protein FtsE; Provisional	97.6
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.6
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.59
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	97.59
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.59
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.59
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.58
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.58
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.58
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.58
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.58
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.58
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.58

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=8.3e-35  Score=238.34  Aligned_cols=204  Identities=42%  Similarity=0.741  Sum_probs=171.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|.+|+||||++|+|+|...|.++.+..+.|..+..... .+++..++||||||+.++...+..+.+++..++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            48999999999999999999999999998777788888888776 48999999999999999888888888999999988


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      ..+++|++|+|++++ +++..++..++.+.+.||.++|++++||+|++|....  ..+++|+....+..++.++..|++|
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence            889999999999999 9999999999999999999999999999999998877  6699999853456799999999999


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL  227 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  227 (301)
                      ++.|++..........++.+|++.|..++..+++.+|.+++++.+++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~  204 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER  204 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            999999844444556899999999999999999999999999988774

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=4.8e-33  Score=225.87  Aligned_cols=195  Identities=51%  Similarity=0.855  Sum_probs=173.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... +++..+.||||||+.++......+.+++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            479999999999999999999999887776666778777776655 6889999999999999877667777888888887


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +.+++|++|+|+++. +++..+...++.+++.||..+++++++++|++|....  ..+++++.. .+..++.++..|+.+
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence            889999999999998 5999999999999999998888899999999999877  789999986 678899999999999


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~  220 (301)
                      ++.|++... ++..+.++.+|++.|..+++.+++.+|.+++
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~  195 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM  195 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999887 7788999999999999999998888887654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1159 Era GTPase [General function prediction only]

Probab=99.93  E-value=6.7e-25  Score=180.75  Aligned_cols=177  Identities=21%  Similarity=0.314  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ..|+|+|+||+|||||+|+|+|..+  +..++.+.||+.........+...+.++||||++.+   ...+.+.+.+....
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~   81 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS   81 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence            6899999999999999999999999  778888999999888888788889999999999985   55667778888888


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc-HHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      ++..+|+++||+|++..+...+...++.++..   .  .|+++++||+|....  .. +...++.     +...      
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~------  143 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKP--KTVLLKLIAF-----LKKL------  143 (298)
T ss_pred             HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCc--HHHHHHHHHH-----HHhh------
Confidence            89999999999999977999999998888872   1  299999999998866  33 2232222     1111      


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR  222 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  222 (301)
                        ++|....+.||..+.+++.|++.+...+++. ..+|+.++..
T Consensus       144 --~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg-~~~yp~d~it  184 (298)
T COG1159         144 --LPFKEIVPISALKGDNVDTLLEIIKEYLPEG-PWYYPEDQIT  184 (298)
T ss_pred             --CCcceEEEeeccccCCHHHHHHHHHHhCCCC-CCcCChhhcc
Confidence              1344445589999999999999999999873 3456666543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.89  E-value=7.8e-22  Score=166.25  Aligned_cols=193  Identities=22%  Similarity=0.294  Sum_probs=134.2

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        13 ~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      +....+..+|+|+|.+|+||||++|+|+|..++...... +.+........ ..++..+.||||||+.+....+......
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~-~~~G~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSR-TRAGFTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEE-EECCeEEEEEECCCCCchHHHHHHHHHH
Confidence            334456689999999999999999999999874433221 22222222222 3678999999999999864333332222


Q ss_pred             HHHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      +..++  ...++|++|||.+++ .+++..+...++.+.+.||.++|.++++++||+|...+++.++++|+.+ ..+.++.
T Consensus       110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            22222  235799999997765 4888899999999999999999999999999999876555889999996 8888888


Q ss_pred             HHHHcC-----------CceEEecCCCcccccc--------h-hHHHHHHHHHHHHHhh
Q 022188          172 ILQLCD-----------NRCVLFDNKTKDEAKG--------T-EQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       172 ~~~~~~-----------~~~~~~~~~~~~~~~~--------~-~~~~~L~~~l~~~~~~  210 (301)
                      ++..+.           .++..+.|...+....        | .-+..|+..|..+...
T Consensus       187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~  245 (313)
T TIGR00991       187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN  245 (313)
T ss_pred             HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence            887543           2334444443332110        1 2366788887776643

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.88  E-value=4.2e-21  Score=173.94  Aligned_cols=162  Identities=21%  Similarity=0.281  Sum_probs=124.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|+|...+.+.... +.|+....... .+++..+.||||||+.++.... ....++...+.
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~-~~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik  194 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFG-MGTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQ-SKNEKILSSVK  194 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCC-CCceEEEEEEE-EECCceEEEEECCCCCccccch-HHHHHHHHHHH
Confidence            479999999999999999999999887765433 34555443333 3678899999999999975432 22334444332


Q ss_pred             cc--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc-----ccHHHHhcccCCchHH
Q 022188           99 MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPKPLK  170 (301)
Q Consensus        99 ~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-----~~~~~~~~~~~~~~l~  170 (301)
                      .+  ..++|++|||++++ .+...++...++.+.+.||..+|+++|||+||+|...+++     .++++|+.+ .++.++
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq  273 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ  273 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence            22  34789999999886 2333467789999999999999999999999999886422     589999986 889999


Q ss_pred             HHHHHcCCceEEec
Q 022188          171 EILQLCDNRCVLFD  184 (301)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (301)
                      .++..|.++...|+
T Consensus       274 ~~Irq~~g~~~l~n  287 (763)
T TIGR00993       274 QAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHhcCcceecc
Confidence            99999998777665

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=9.7e-22  Score=150.84  Aligned_cols=155  Identities=21%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH-HHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~~~   98 (301)
                      ++|+++|.||+|||||+|+|+|....  ....++.|+......+. ..+..+.++|+||+++......+  +.+. .++.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~-~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFK-LGDQQVELVDLPGIYSLSSKSEE--ERVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEE-ETTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEE-ecCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence            47999999999999999999999953  23345667665554444 67899999999999886543322  1222 2222


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                        ...+|++++|+|++ .+. .+...+..+.+. |.    |+++++||+|.+...+..++          ...+-...+.
T Consensus        76 --~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~  136 (156)
T PF02421_consen   76 --SEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGV  136 (156)
T ss_dssp             --HTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS
T ss_pred             --hcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCC
Confidence              46789999999998 442 223344444443 43    99999999997754221111          3445556688


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLV  204 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l  204 (301)
                      ++++      .+|+.+.|+++|++.|
T Consensus       137 pvi~------~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  137 PVIP------VSARTGEGIDELKDAI  156 (156)
T ss_dssp             -EEE------EBTTTTBTHHHHHHHH
T ss_pred             CEEE------EEeCCCcCHHHHHhhC
Confidence            8887      7788889999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=8.7e-21  Score=161.35  Aligned_cols=172  Identities=19%  Similarity=0.216  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+|+|++|+|||||+|+|+|...  +..++.+.|+..........++..+.+|||||+....   ....+.+......+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            699999999999999999999876  3334445555544444444556679999999998742   22233344444445


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (301)
                      ...+|++++|+|++...+.. ..++..+.. .+    .|+++|+||+|....  ..+.+..        ..+....+. .
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~~~  140 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDFKD  140 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCCCc
Confidence            67889999999998544433 444555543 22    289999999998643  2222222        222222222 3


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~  220 (301)
                      +++      .||+++.|+++|++.+...++.. ...|+.+.
T Consensus       141 v~~------iSA~~g~gi~~L~~~l~~~l~~~-~~~~~~~~  174 (270)
T TIGR00436       141 IVP------ISALTGDNTSFLAAFIEVHLPEG-PFRYPEDY  174 (270)
T ss_pred             eEE------EecCCCCCHHHHHHHHHHhCCCC-CCCCCCcc
Confidence            444      89999999999999999988763 23355444

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=3e-20  Score=160.13  Aligned_cols=174  Identities=20%  Similarity=0.310  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ..|+|+|++|||||||+|+|+|...  +..++.+.|+..........++..+.++||||+.+..   ....+.+......
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~   80 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS   80 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence            6799999999999999999999876  3333444555544444443455789999999998743   2333444444445


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-C
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-N  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  178 (301)
                      +...+|++++|+|++.+++..+...+..+... +    .|+++|+||+|..... ..+...+..        +....+ .
T Consensus        81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~~~  146 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE--------LSELMDFA  146 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCCCC
Confidence            56788999999999966777776666666532 2    3999999999987321 223333222        222222 2


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~  219 (301)
                      .+++      .|++++.++++|++++...++... ..|+.+
T Consensus       147 ~i~~------iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~  180 (292)
T PRK00089        147 EIVP------ISALKGDNVDELLDVIAKYLPEGP-PYYPED  180 (292)
T ss_pred             eEEE------ecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            3343      788889999999999999887632 345544

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.84  E-value=5.4e-20  Score=153.28  Aligned_cols=132  Identities=28%  Similarity=0.341  Sum_probs=100.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC---cHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKEI   93 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~~~   93 (301)
                      ....+|+|+|++|+|||||+|+|+|...+.... ..+.|......... +++..+++|||||+.+....   +..+...+
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            456899999999999999999999998755543 23445555554433 67889999999999986421   22233333


Q ss_pred             HHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ..++.  ..++|+++||..++ .+++..+...++.+.+.||..+|.++++|+||+|...+
T Consensus       107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            33332  24689999998777 57888889999999999999999999999999998755

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK15494 era GTPase Era; Provisional

Probab=99.84  E-value=9.9e-20  Score=159.12  Aligned_cols=172  Identities=20%  Similarity=0.258  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|.+|+|||||+|+|+|...  +..++...|+..........++..+.+|||||+.....   .+...+.+....
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~~  127 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCAWS  127 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHHHH
Confidence            4899999999999999999999876  22333344444333333346778899999999875322   233344444444


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC--
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--  177 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  177 (301)
                      ++.++|++++|+|....+...+..++..+... +.    |.++|+||+|+...   .+.+         +...+....  
T Consensus       128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~---~~~~---------~~~~l~~~~~~  190 (339)
T PRK15494        128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESK---YLND---------IKAFLTENHPD  190 (339)
T ss_pred             HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccc---cHHH---------HHHHHHhcCCC
Confidence            56788999999998877777776666666543 22    77889999997532   1221         222222222  


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~  220 (301)
                      ..+++      +||+++.|+++|++++...++. +..+|+.++
T Consensus       191 ~~i~~------iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~  226 (339)
T PRK15494        191 SLLFP------ISALSGKNIDGLLEYITSKAKI-SPWLYAEDD  226 (339)
T ss_pred             cEEEE------EeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence            23343      7889999999999999998876 334466555

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=6.1e-20  Score=159.76  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ..|+|+|.||+|||||+|+|+|...  +.+...+.+|+...+....|.+..+.+|||+|+.+..  .+.+.+++......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            6799999999999999999999987  5555556566666666666889999999999998743  13344445544444


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +...+|++|||+|+..+++..+....++|+. .+.    |+++|+||+|....     ++.        ..++..-.-+.
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~-----e~~--------~~efyslG~g~  141 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKA-----EEL--------AYEFYSLGFGE  141 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchh-----hhh--------HHHHHhcCCCC
Confidence            5567799999999998999999999888883 233    99999999996522     111        11122111133


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .++      .||..+.|+.+|++.+...+
T Consensus       142 ~~~------ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         142 PVP------ISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             ceE------eehhhccCHHHHHHHHHhhc
Confidence            333      79999999999999999887

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=6e-19  Score=153.58  Aligned_cols=177  Identities=22%  Similarity=0.253  Sum_probs=127.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+|+|.||+|||||+|+|+|+..  +..++.+.|+.........++++.+.+|||.|+-......+.+...-....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            358999999999999999999999998  555666777777666656689999999999998764332211000000000


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+...+|++++|+|++.+++.++.+....+.+. |.    ++++++||||..+.+...++++...     ++..+...+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~  324 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD  324 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence            1123456999999999999999999988887765 44    8999999999876533455555444     555444333


Q ss_pred             -CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                       .+.+      ..||.++.++..|++.+........
T Consensus       325 ~a~i~------~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         325 FAPIV------FISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             CCeEE------EEEecCCCChHHHHHHHHHHHHHhc
Confidence             2333      3789999999999999988765543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4e-18  Score=133.52  Aligned_cols=169  Identities=19%  Similarity=0.219  Sum_probs=114.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc---HHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~~   94 (301)
                      ...-|+++|.+|+|||||||+|+|.....-....+|.|.....+.   +++ .+.+||.||++-...+.   +.+...+.
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~---~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE---VDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE---ecC-cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            457899999999999999999999774333334556666655443   333 27899999999877654   33444455


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .++... ....++++++|+.+.+...++.+++++... +.    |+++++||+|....  ......+..     +.+.+.
T Consensus        99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~  165 (200)
T COG0218          99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAEELK  165 (200)
T ss_pred             HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence            555433 347899999999988999999999999875 43    89999999999875  333322222     221111


Q ss_pred             H-cCCc--eEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 L-CDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      . ....  +..      .|+..+.|+++|...|...+.
T Consensus       166 ~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         166 KPPPDDQWVVL------FSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CCCCccceEEE------EecccccCHHHHHHHHHHHhh
Confidence            1 1111  222      344456779999988877654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.80  E-value=2.8e-18  Score=135.77  Aligned_cols=163  Identities=22%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~~~~   98 (301)
                      ++|+++|++|+|||||+|++++.......  ....|......... ..+..+++|||||+.+...... .+.......+ 
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence            47999999999999999999987652211  12223333332222 4567899999999865322111 1111111111 


Q ss_pred             ccCCCccEEEEEEecCCCCC---HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           99 MAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                        ....|++++|+|++++.+   .....++..++..+..   .|+++++||+|....  ..+.. .        ..+...
T Consensus        77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~~~--~~~~~-~--------~~~~~~  140 (168)
T cd01897          77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLLTF--EDLSE-I--------EEEEEL  140 (168)
T ss_pred             --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccCch--hhHHH-H--------HHhhhh
Confidence              123589999999984332   2224556666554422   399999999998654  33322 1        112222


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+++.      +|++++.|++++++++...+
T Consensus       141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         141 EGEEVLK------ISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCceEE------EEecccCCHHHHHHHHHHHh
Confidence            2233444      89999999999999987654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=8.8e-18  Score=146.77  Aligned_cols=164  Identities=21%  Similarity=0.259  Sum_probs=119.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+.+++|+|+||+|||||+|+|++...  ..++..+.||+.........+|.++.++||.|+.++...-+.++   +..
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iG---IeR  289 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIG---IER  289 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHH---HHH
Confidence            4568999999999999999999999998  66777788888777766668999999999999998654333333   222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .+.....+|.+++|+|++.+.+..+...+..+      +..+|+++|.||.|+...  .....         + .+.  .
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~--~~~~~---------~-~~~--~  349 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK--IELES---------E-KLA--N  349 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc--cccch---------h-hcc--C
Confidence            23345677999999999966777776666511      122389999999998765  11110         1 000  0


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +...+.      .|++++.|++.|.+.|...+...
T Consensus       350 ~~~~i~------iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         350 GDAIIS------ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CCceEE------EEecCccCHHHHHHHHHHHHhhc
Confidence            122333      78889999999999999887654

>cd04171 SelB SelB subfamily

Probab=99.80  E-value=5.4e-18  Score=133.40  Aligned_cols=157  Identities=20%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .|+|+|++|+|||||+|+|++....... ....+.|......... .. +..+.+|||||..+           +...+.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~-----------~~~~~~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD-LPSGKRLGFIDVPGHEK-----------FIKNML   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE-ecCCcEEEEEECCChHH-----------HHHHHH
Confidence            6999999999999999999975421111 0112234333333333 33 67899999999532           222223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH---
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL---  175 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~---  175 (301)
                      ..+.++|++++|+|+++.........+..+... +.   .|+++++||+|+...  .........     +...+..   
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~  138 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL  138 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence            345678999999999854444444444444332 32   289999999997644  222222222     3333333   


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+.++++      .|++.+.+++++++.+..
T Consensus       139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         139 ADAPIFP------VSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCcEEE------EeCCCCcCHHHHHHHHhh
Confidence            1334444      788889999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01898 Obg Obg subfamily

Probab=99.80  E-value=3.2e-18  Score=135.66  Aligned_cols=164  Identities=21%  Similarity=0.194  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      +|+|+|++|+|||||+|+|++.... .+. ..+.|......... .++. .+.+|||||+.+.......+...+...   
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~-~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IAD-YPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH---   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-ccC-CCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence            4899999999999999999986541 111 11223332222222 4454 899999999864322111122222222   


Q ss_pred             cCCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188          100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (301)
                       ...+|++++|+|++++ -+... ..+.+.+..........|+++|+||+|....  ....+.+        ..+.... 
T Consensus        76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~--------~~~~~~~~  144 (170)
T cd01898          76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELL--------KELLKELW  144 (170)
T ss_pred             -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHH--------HHHHhhCC
Confidence             2356999999999844 22222 3444555443211123489999999998655  3333322        2233332 


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +..+++      +|++.+.+++++++++.+.
T Consensus       145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         145 GKPVFP------ISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence            333444      7888899999999988654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04163 Era Era subfamily

Probab=99.79  E-value=5.3e-18  Score=133.51  Aligned_cols=164  Identities=21%  Similarity=0.232  Sum_probs=103.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|++|+|||||+|+++|.......  ....++...........+..+.+|||||+.........   .+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGE---RMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHH---HHHHHHH
Confidence            378999999999999999999998753222  22223332222223345578899999998875332211   1222233


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  177 (301)
                      .....+|++++|++++.+++......+..+... +.    |+++++||+|..... ..+.+....        +....+ 
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~~----~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~  143 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-KT----PVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF  143 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-CC----CEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence            345677999999999966566666665655543 22    899999999976321 233332222        222221 


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+++.      .+++.+.+++++++.|.+.
T Consensus       144 ~~~~~------~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         144 AEIFP------ISALKGENVDELLEEIVKY  167 (168)
T ss_pred             CceEE------EEeccCCChHHHHHHHHhh
Confidence            23333      6777889999999988654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.79  E-value=2.1e-17  Score=134.14  Aligned_cols=169  Identities=15%  Similarity=0.280  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+|+|++|+|||||+|+|++...........+.|.......   + +..+.+|||||+.....+... .+.+...+
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~l~l~DtpG~~~~~~~~~~-~~~~~~~~   97 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE---V-NDKLRLVDLPGYGYAKVSKEE-KEKWQKLI   97 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe---c-CCeEEEeCCCCCCCcCCCchH-HHHHHHHH
Confidence            457899999999999999999998752222222233343333221   2 467999999998764332211 11222221


Q ss_pred             h---ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        98 ~---~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .   .....++++++|+|++.+++..+...+..+.. .+.    |+++++||+|....  .........     +...+.
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~----~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~  165 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGI----PVLIVLTKADKLKK--GERKKQLKK-----VRKALK  165 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCC----cEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence            1   22345678889999886777666555555543 232    89999999998755  333332222     333333


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ....++++      .|+.++.+++++++.+...+.
T Consensus       166 ~~~~~~~~------~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        166 FGDDEVIL------FSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             hcCCceEE------EEcCCCCCHHHHHHHHHHHhc
Confidence            22334444      788888999999999987764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=1.5e-18  Score=146.80  Aligned_cols=213  Identities=17%  Similarity=0.211  Sum_probs=128.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC---CCCccc-------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           21 TVVLLGRTGNGKSATGNSILG---RKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g---~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +|+|+|++|+|||||+++|+.   ......             .....+.|.......+. |.+..+++|||||..++  
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df--   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF--   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence            489999999999999999963   211000             00122455555555554 78899999999997652  


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~  164 (301)
                           ..+...++    ..+|++++|+|+..+....+...+..+... +.    |+++++||+|....   ..+..+.  
T Consensus        78 -----~~~~~~~l----~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a---~~~~~~~--  138 (270)
T cd01886          78 -----TIEVERSL----RVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA---DFFRVVE--  138 (270)
T ss_pred             -----HHHHHHHH----HHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHHHHH--
Confidence                 12333333    455999999999877877777777776543 33    89999999997644   2222222  


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc---CCC-----CCchHHHHHHHHHHHhHHHHHH
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN---GGQ-----PYTDELKRGATELRDKKAEVDS  236 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                            .+...++...++..  .+.++.  .++..+++.+......+   .+.     ..+.++...+++.  +...++.
T Consensus       139 ------~l~~~l~~~~~~~~--~Pisa~--~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~--r~~l~e~  206 (270)
T cd01886         139 ------QIREKLGANPVPLQ--LPIGEE--DDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA--REELIET  206 (270)
T ss_pred             ------HHHHHhCCCceEEE--eccccC--CCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH--HHHHHHH
Confidence                  23333343333322  123322  22233333332221111   011     2455666666665  5556788


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188          237 LKEYSKREISKLMGQMQESYEDRIKRMAEMV  267 (301)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (301)
                      +.+.+++.++++.++.+...++..+.+++.+
T Consensus       207 vae~dd~L~e~yl~~~~~~~~el~~~l~~~~  237 (270)
T cd01886         207 LAEFDDELMEKYLEGEEITEEEIKAAIRKGT  237 (270)
T ss_pred             HhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            8899999999998877666655555555543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=2e-17  Score=150.44  Aligned_cols=174  Identities=23%  Similarity=0.251  Sum_probs=112.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||+|+|++.......  ....|+..........++..+.+|||||+.........+........
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~--~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS--DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeec--CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4589999999999999999999988753332  22333333333223367888999999998764433222211111111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (301)
                      ..+...+|++++|+|++.+++..+...+..+.+. +.    |+++++||+|....  ....+....     +...+... 
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence            1234567999999999988888887776666543 33    89999999998744  333333222     33222211 


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ..+++      ..||+++.++.++++.+.......
T Consensus       318 ~~~i~------~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        318 YAPIV------FISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCCEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            12333      488999999999999988776543

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=1.6e-17  Score=144.32  Aligned_cols=168  Identities=17%  Similarity=0.147  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .|+|+|.+|||||||+|+|++...  . .+..+ .|.......+...++..++++||||+.........+...+.+.+. 
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~--~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie-  235 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKP--K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE-  235 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCC--c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh-
Confidence            689999999999999999998653  2 22333 344433333332256789999999997644333334555555443 


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                         .++++++|+|+++.-+..+ ..+...+......-..+|+++|+||+|+...  .......       +.......+.
T Consensus       236 ---~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~~  303 (335)
T PRK12299        236 ---RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALGG  303 (335)
T ss_pred             ---hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcCC
Confidence               4599999999984333333 3344445443211123499999999998644  2221110       1122233334


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++      +||.++.++++|++++...+..
T Consensus       304 ~i~~------iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        304 PVFL------ISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             CEEE------EEcCCCCCHHHHHHHHHHHHHh
Confidence            4555      7888999999999999887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.79  E-value=1.8e-17  Score=150.59  Aligned_cols=175  Identities=24%  Similarity=0.272  Sum_probs=112.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+++|++|+|||||+|+|++......  ...+.|+..........++..+.+|||||+.+.......+........
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV--SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeec--CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            347899999999999999999998764322  222333333222223357778999999998765432222111111111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..++..+|++++|+|+.++++..+...+..+.+. +.    |+++++||+|+... ....+++...     +...+...+
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~  317 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-GK----ALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD  317 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence            1235677999999999988888887776666543 32    89999999998722 1333333332     332222222


Q ss_pred             -CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                       .+++      .+||+++.++.++++++.......
T Consensus       318 ~~~vi------~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       318 FAPIV------FISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCceE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence             2334      389999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=1.2e-17  Score=147.87  Aligned_cols=176  Identities=20%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .|+|||.+|||||||+|+|++...   ..+..+.||........... ...++++||||+.........+...+.+.+  
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--  235 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--  235 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--
Confidence            699999999999999999998764   23444445544333333334 457999999999874332233444555444  


Q ss_pred             cCCCccEEEEEEecCC---CCC-HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188          100 AKDGIHAFLVVFSVTN---RFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~---~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                        ..++++++|+|++.   +-. .....+++.+......-..+|+++|+||+|....  ..+.+.+.        .+...
T Consensus       236 --~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~~  303 (390)
T PRK12298        236 --ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVEA  303 (390)
T ss_pred             --HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHHH
Confidence              45599999999871   111 1223444444443111123499999999998644  33333322        23232


Q ss_pred             cC--CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188          176 CD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (301)
Q Consensus       176 ~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~  220 (301)
                      .+  ..+++      .||+++.++++|++.|...++.. ...|+.+.
T Consensus       304 ~~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~  343 (390)
T PRK12298        304 LGWEGPVYL------ISAASGLGVKELCWDLMTFIEEN-PREEAEEA  343 (390)
T ss_pred             hCCCCCEEE------EECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence            22  23444      78888999999999999988763 33355444

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=1.1e-17  Score=132.62  Aligned_cols=171  Identities=22%  Similarity=0.259  Sum_probs=101.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+++|++|+|||||+|+|++........ ..+.+....... ...++..+.+|||||+.+.......+.........
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVP-FEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeE-EEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4789999999999999999999876432222 122222222222 22567788999999987653211111110001111


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-C
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  177 (301)
                      ..+.++|++++|+|+.++.+......+..+... +    .|+++++||+|+........+.....     +...+... .
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~  149 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY  149 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence            234577999999999877766555554444332 2    28999999999865411122222222     22222211 1


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .++++      .|++.+.++.++++.+...
T Consensus       150 ~~~~~------~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         150 APIVF------ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CceEE------EeccCCCCHHHHHHHHHHh
Confidence            23333      7888899999999887653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.78  E-value=1.2e-17  Score=133.54  Aligned_cols=157  Identities=17%  Similarity=0.254  Sum_probs=97.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH--
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV--   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~--   94 (301)
                      ....+|+|+|++|+|||||+|+|++...........+.|.....+.   .+ ..+.+|||||+......... ...+.  
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~liDtpG~~~~~~~~~~-~~~~~~~   90 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE---VN-DGFRLVDLPGYGYAKVSKEE-KEKWQKL   90 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE---eC-CcEEEEeCCCCccccCChhH-HHHHHHH
Confidence            3458999999999999999999998752111112233444443332   22 46899999998765432211 11222  


Q ss_pred             --HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           95 --KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        95 --~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                        .++. ....++++++|+|++.+++..+...+..+... +    .|+++++||+|....  .........     ++..
T Consensus        91 ~~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~-----i~~~  157 (179)
T TIGR03598        91 IEEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK-----IKKA  157 (179)
T ss_pred             HHHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence              2222 23456899999999978888887777666542 3    289999999998754  344444443     4444


Q ss_pred             HHHcC--CceEEecCCCcccccchhHH
Q 022188          173 LQLCD--NRCVLFDNKTKDEAKGTEQV  197 (301)
Q Consensus       173 ~~~~~--~~~~~~~~~~~~~~~~~~~~  197 (301)
                      +...+  .++++      +|++++.|+
T Consensus       158 l~~~~~~~~v~~------~Sa~~g~gi  178 (179)
T TIGR03598       158 LKKDADDPSVQL------FSSLKKTGI  178 (179)
T ss_pred             HhhccCCCceEE------EECCCCCCC
Confidence            44332  24555      666666554

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.78  E-value=1.2e-17  Score=130.28  Aligned_cols=155  Identities=23%  Similarity=0.239  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|++|+|||||+|++++........ ..+.+......... +.+..+.+|||||+.+.....   ..........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEI---EKIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchH---HHHHHHHHHH
Confidence            689999999999999999999876422221 22333333333333 567789999999988754321   1111122223


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      .+..+|++++|+|++.+.+..+...+..   ..+    .|+++++||+|....  ...              .....+.+
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~  133 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL--------------LSLLAGKP  133 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence            3567799999999997666666554433   222    299999999998754  111              11222344


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ++.      .|+.++.++++|+++|...+
T Consensus       134 ~~~------~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         134 IIA------ISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             eEE------EECCCCCCHHHHHHHHHHhh
Confidence            555      67778899999999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.78  E-value=4.2e-18  Score=126.31  Aligned_cols=116  Identities=24%  Similarity=0.311  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+|+|.+|+|||||+|+|++......+.. .+.|... .+.....++..+.++||||+.+........ +.+..++...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence            699999999999999999999765333332 3444444 333333688888999999998854332211 2233333333


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                       ..+|+++||+++..+....+...++.++  .+    .|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence             6779999999987544445566666663  22    299999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01894 EngA1 EngA1 subfamily

Probab=99.78  E-value=6.1e-18  Score=132.06  Aligned_cols=155  Identities=19%  Similarity=0.203  Sum_probs=100.2

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 022188           23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (301)
Q Consensus        23 ~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
                      +++|++|+|||||+|+|++........ ..+.|........ ...+..+.+|||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEA-EWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEE-EECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            589999999999999999876422221 2233333333333 35678899999999987432   222223333333445


Q ss_pred             CccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-ceE
Q 022188          103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-RCV  181 (301)
Q Consensus       103 ~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  181 (301)
                      .+|++++|+|+.++.+..+...++.++.. +    .|+++++||+|....  ....            ..+...+. +++
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~------------~~~~~~~~~~~~  136 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEA------------AEFYSLGFGEPI  136 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHH------------HHHHhcCCCCeE
Confidence            67999999999866766666666666543 3    299999999998654  2110            11112232 333


Q ss_pred             EecCCCcccccchhHHHHHHHHHHHH
Q 022188          182 LFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .      .|++++.+++++++++.+.
T Consensus       137 ~------~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         137 P------ISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             E------EecccCCCHHHHHHHHHhh
Confidence            3      7888889999999998653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=4.7e-17  Score=148.80  Aligned_cols=175  Identities=18%  Similarity=0.222  Sum_probs=110.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||+|+|++....... ...+.|....... ..+++..+.+|||||+.......  ...+....+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~-~~~~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSL-IELGGKTWRFVDTAGLRRRVKQA--SGHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEE-EEECCEEEEEEECCCcccccccc--chHHHHHHH
Confidence            4589999999999999999999998752221 1223333322222 33678889999999985432211  111222222


Q ss_pred             h--ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~--~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      .  .+...+|++++|+|++.+.+..+...+..+... +    .|+++|+||+|+...  .........     +...+..
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~  353 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ  353 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence            1  235678999999999988888887766665442 2    299999999998643  222111111     1111111


Q ss_pred             c-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188          176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (301)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~  214 (301)
                      . ..+++      .+||+++.++++++..+...+......
T Consensus       354 ~~~~~~~------~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        354 VPWAPRV------NISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             CCCCCEE------EEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            1 12333      389999999999999999887654433

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.77  E-value=6.2e-17  Score=146.57  Aligned_cols=158  Identities=22%  Similarity=0.274  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+.+|+++|++|+|||||+|+|++........ ..+.|.......+. +++..+.+|||||+.++.   ..+...-....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHIN-LDGIPLRLIDTAGIRETD---DEVEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEE-ECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence            34789999999999999999999876422211 12333333223333 678899999999987632   12111111112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ...+..+|++++|+|++++.+..+...+..   . . .  .|+++|+||+|+...  ....               ...+
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~-~-~--~piiiV~NK~DL~~~--~~~~---------------~~~~  344 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE---L-K-D--KPVIVVLNKADLTGE--IDLE---------------EENG  344 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh---c-C-C--CCcEEEEEhhhcccc--chhh---------------hccC
Confidence            224567799999999986666555443332   1 1 2  299999999997643  1111               1112


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++.      .|++++.|+++|++++...+..
T Consensus       345 ~~~i~------iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 KPVIR------ISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             CceEE------EEeeCCCCHHHHHHHHHHHHhh
Confidence            23333      7889999999999999988754

>cd01878 HflX HflX subfamily

Probab=99.77  E-value=2.8e-17  Score=134.33  Aligned_cols=164  Identities=26%  Similarity=0.246  Sum_probs=99.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++..+|+|+|++|||||||+|+|++........  ...|...........+...+.+|||||+.+...  ....+.+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence            345799999999999999999999976432221  122322222223322334899999999865322  1222222222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      + ..+..+|++++|+|++++.+.... .+...+......+  .|+++|+||+|....  ....            .....
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~------------~~~~~  177 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE------------ERLEA  177 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH------------HHhhc
Confidence            2 234577999999999855544443 3444554432222  389999999998654  2221            11111


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ...+++.      +|++.+.|+.+++++|...
T Consensus       178 ~~~~~~~------~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         178 GRPDAVF------ISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCceEE------EEcCCCCCHHHHHHHHHhh
Confidence            1233444      7888899999999988653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=6.3e-17  Score=147.25  Aligned_cols=176  Identities=20%  Similarity=0.273  Sum_probs=125.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~   97 (301)
                      .+|+++|.||+||||++|+|+|..+  .....++.|+........ ..+..+.++|.||.++....  ++.+.+++.   
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l---   77 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSEDEKVARDFL---   77 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCchHHHHHHHH---
Confidence            5699999999999999999999987  444567788877766655 67888999999999986543  333333322   


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                        ....+|+++.|+|++ .+...-.-.++.+.  +|.    |+++++|++|..+..+..++          ...+-+..|
T Consensus        78 --l~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LG  138 (653)
T COG0370          78 --LEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLG  138 (653)
T ss_pred             --hcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhC
Confidence              256889999999998 55444444444332  243    89999999998765222222          345556678


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC---CCCchHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG---QPYTDELKRGATE  226 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~---~~~~~~~~~~~~~  226 (301)
                      -++.+      .+|.++.|+++++..+......+..   ..|.+++.+..++
T Consensus       139 vPVv~------tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~~  184 (653)
T COG0370         139 VPVVP------TVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIKE  184 (653)
T ss_pred             CCEEE------EEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHHH
Confidence            89888      8888999999999999887655433   1255555444443

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.76  E-value=5.7e-18  Score=136.54  Aligned_cols=162  Identities=20%  Similarity=0.328  Sum_probs=110.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~   80 (301)
                      +.++|+++|+.|+|||||+++|++.......                ....+.|......... ...+..++++||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3589999999999999999999855421100                0012344444444333 3678899999999954


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      +       ...++...    ...+|++++|+|+..++.......+..+... +.    |+++++||+|.. .  ..+.+.
T Consensus        82 ~-------f~~~~~~~----~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~  142 (188)
T PF00009_consen   82 D-------FIKEMIRG----LRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEI  142 (188)
T ss_dssp             H-------HHHHHHHH----HTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHH
T ss_pred             c-------eeecccce----ecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHH
Confidence            3       22333333    4456999999999988888888888887654 33    899999999987 2  344444


Q ss_pred             hcccCCchHH-HHHHHcCC------ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          161 LGHECPKPLK-EILQLCDN------RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       161 ~~~~~~~~l~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+     +. .++...+.      ++++      .|+.++.|+..|++.+...+|
T Consensus       143 ~~~-----~~~~l~~~~~~~~~~~~~vi~------~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEE-----IKEKLLKEYGENGEEIVPVIP------ISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHH-----HHHHHHHHTTSTTTSTEEEEE------EBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHH-----HHHHhccccccCccccceEEE------EecCCCCCHHHHHHHHHHhCc
Confidence            444     33 34443332      3444      788889999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=2.3e-17  Score=132.86  Aligned_cols=165  Identities=21%  Similarity=0.228  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (301)
                      +|+|+|.+|+|||||+|+|++.........              ..+.+......... +.+..+.+|||||..+.    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHH----
Confidence            489999999999999999998765332211              01223333223222 45678999999997642    


Q ss_pred             HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (301)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~  166 (301)
                         ......    ++..+|++++|+|+..+........+..+.. .+    .|+++++||+|....  ..+......   
T Consensus        76 ---~~~~~~----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~---  138 (189)
T cd00881          76 ---SSEVIR----GLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE---  138 (189)
T ss_pred             ---HHHHHH----HHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence               112222    2346699999999986666666666665554 22    299999999998754  333333332   


Q ss_pred             chHHHHHHHcCCc-----e---EEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          167 KPLKEILQLCDNR-----C---VLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       167 ~~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                        +...+...+..     .   ....+..+.|++.+.++.+++.++...++
T Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              33333322210     0   00111233788889999999999987764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=2e-17  Score=134.81  Aligned_cols=180  Identities=17%  Similarity=0.186  Sum_probs=117.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+.+|+|+|.||+|||||||+|++....+.  +..+.++....+....+++..+++|||||+++....+.+..+-+... 
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~-  114 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY-  114 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH-
Confidence            347888999999999999999995443222  11222333222223336678999999999999766555444444444 


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC----------ccccHHHHhcccCCc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPK  167 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~~~~~~~~~~~~  167 (301)
                         .+..|.+++++++.+|.-..+...++-+.-....   +++++++|.+|...+          +...+.+++.. .-.
T Consensus       115 ---l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~  187 (296)
T COG3596         115 ---LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAE  187 (296)
T ss_pred             ---hhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHH
Confidence               4556999999999988777776666655544332   389999999998754          23455555553 222


Q ss_pred             hHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (301)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~  214 (301)
                      .+.+++..       ..+....+.+...+++.|...+...++.+...
T Consensus       188 ~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs  227 (296)
T COG3596         188 ALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARS  227 (296)
T ss_pred             HHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence            23333332       33333345667789999999999888764433

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=5.5e-17  Score=135.33  Aligned_cols=131  Identities=21%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHH
Q 022188           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVG   90 (301)
Q Consensus        12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~   90 (301)
                      +++-+...++|+|.|+||+|||||+++|++..+  .. .+.+.|++.-..++...++..+++|||||+.|-.... ..+.
T Consensus       161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--Ev-A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE  237 (346)
T COG1084         161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EV-APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE  237 (346)
T ss_pred             CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--cc-CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence            455566678999999999999999999999876  33 3445555544444454778899999999999854321 2233


Q ss_pred             HHHHHHHhccCCCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           91 KEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .+...++.   .-.++++|++|++  .+++-++ ...++.++..|..    |+++|+||+|..+.
T Consensus       238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~  295 (346)
T COG1084         238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence            33333332   2237899999998  4666665 5688888888874    89999999997755

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=4.4e-17  Score=141.48  Aligned_cols=166  Identities=20%  Similarity=0.202  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      -.|+|+|.+|||||||+|+|++...  .....+..|.......+. .++ ..++++||||+.........+...+.+.+.
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~-~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVR-VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEE-eCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            3689999999999999999998653  111112233333333333 344 789999999997643333334455555443


Q ss_pred             ccCCCccEEEEEEecCCC---CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           99 MAKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                          +++++++|+|+++.   -...+ ..+.+.+......-..+|+++|+||+|+...  ..+.+..        +.+..
T Consensus       235 ----rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~--------~~l~~  300 (329)
T TIGR02729       235 ----RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELL--------KELKK  300 (329)
T ss_pred             ----hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHH--------HHHHH
Confidence                45999999999832   11122 2333344433111123499999999998654  3333222        22333


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+..+++      +|++++.++++|++++...+
T Consensus       301 ~~~~~vi~------iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       301 ALGKPVFP------ISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HcCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence            33444554      78888999999999987654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.76  E-value=2.6e-17  Score=134.20  Aligned_cols=163  Identities=13%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEee--------------------------CC----
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLK--------------------------DG----   68 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~----   68 (301)
                      .+|+++|++|+|||||+.+|++... ........+.|.......+.+.                          .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3699999999999999999987621 2122222233333332222210                          02    


Q ss_pred             --eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           69 --QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        69 --~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                        ..+.+|||||..           .+...+......+|++++|+|++.+ ........+..+.. .+.   .|+++++|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence              678999999932           2333333334567999999999843 33444455555533 232   27999999


Q ss_pred             CCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      |+|+...  ..+...+..     ++..+...   +..+++      .|++++.++++|++++...++.
T Consensus       146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~~~~i~~------vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAENAPIIP------ISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             chhccCH--HHHHHHHHH-----HHHHHhccccCCCcEEE------EeCCCCCCHHHHHHHHHHhCCC
Confidence            9998754  333333333     33333321   223344      7888999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.76  E-value=4.2e-17  Score=148.17  Aligned_cols=160  Identities=21%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+|+|++|+|||||+|+|++....... ...+.|........ .+++..+.+|||||+...   ...+.+.+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~-~~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDA-EWGGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEE-EECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            4899999999999999999987642111 12344444444433 378889999999998642   223334444444445


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (301)
                      ...+|++++|+|+..+++..+....+++++. +.    |+++|+||+|....  ...           ..++ ...+. .
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~~----piilVvNK~D~~~~--~~~-----------~~~~-~~lg~~~  136 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-GK----PVILVANKIDGKKE--DAV-----------AAEF-YSLGFGE  136 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-CC----CEEEEEECccCCcc--ccc-----------HHHH-HhcCCCC
Confidence            6778999999999988888888888887763 33    89999999997644  110           1111 12232 3


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +++      .|+..+.++.+|++.+...++.
T Consensus       137 ~~~------vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       137 PIP------ISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             eEE------EeCCcCCChHHHHHHHHHhcCc
Confidence            444      7888899999999998877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.76  E-value=2.5e-16  Score=150.13  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||+|+|+|.... .+ ...+.|+......+ .+++..+.+|||||.++.....  ....+.+... 
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~-vg-n~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~-   79 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQR-VG-NWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-   79 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHH-
Confidence            68999999999999999999998762 22 23455655444433 3677899999999998764321  1122222221 


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ......+|++++|+|++ ..... ..+...+.+. +.    |+++++||+|..+.  ..+...        ++.+.+..+
T Consensus        80 ~l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-gi----PvIvVlNK~Dl~~~--~~i~id--------~~~L~~~LG  142 (772)
T PRK09554         80 YILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-GI----PCIVALNMLDIAEK--QNIRID--------IDALSARLG  142 (772)
T ss_pred             HHhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-CC----CEEEEEEchhhhhc--cCcHHH--------HHHHHHHhC
Confidence            11245789999999998 33322 2333344332 32    99999999997644  222221        334445567


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKRGATEL  227 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~--~~~~~~~~~~~~~~~  227 (301)
                      .++++      .+++.+.|++++.+.+........  ...|++++.+..++.
T Consensus       143 ~pVvp------iSA~~g~GIdeL~~~I~~~~~~~~~~~~~yp~~le~~I~~l  188 (772)
T PRK09554        143 CPVIP------LVSTRGRGIEALKLAIDRHQANENVELVHYPQPLLNEADSL  188 (772)
T ss_pred             CCEEE------EEeecCCCHHHHHHHHHHhhhccCCcccCCCHHHHHHHHHH
Confidence            77776      778888999999999987654211  123666655544443

>cd01865 Rab3 Rab3 subfamily

Probab=99.75  E-value=6.9e-17  Score=127.49  Aligned_cols=159  Identities=16%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++........+  ..+......... .++  ..+.+|||||...           +....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~~-----------~~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVF-RNDKRVKLQIWDTAGQER-----------YRTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHH
Confidence            5899999999999999999998765222111  111111111222 233  4689999999433           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...++++|++++|+|.+++-+... ..++..+.......  .|++++.||+|+........++         ...+....
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLADQL  136 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence            344678899999999984433222 33444554433222  3899999999976441011111         22344444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..++.      +|++++.|+.+|++++...+.
T Consensus       137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         137 GFEFFE------ASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             CCEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence            545555      788899999999999877653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.75  E-value=6.4e-17  Score=141.69  Aligned_cols=162  Identities=22%  Similarity=0.170  Sum_probs=100.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|.+|+|||||+|+|++...+.+.  ..+.|.......+...++..+.+|||||+... .+. ...+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~-~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPH-ELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc-CCH-HHHHHHHHHH
Confidence            3478999999999999999999998753222  12333333333334336778999999998542 122 2222232222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                       ..+..+|++++|+|++++.+.... .+...+... +. ...|+++|+||+|....  ..+..            ... .
T Consensus       264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~-~  325 (351)
T TIGR03156       264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEE-G  325 (351)
T ss_pred             -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHh-C
Confidence             235677999999999866554443 233444443 21 12399999999997643  22211            111 0


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..+++      .+|++++.|+++|++.|...
T Consensus       326 ~~~~i------~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YPEAV------FVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCEE------EEEccCCCCHHHHHHHHHhh
Confidence            11233      37899999999999998653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.75  E-value=1.4e-16  Score=126.00  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|++|+|||||++++++...........+.  ......+. .++  ..+.+|||||...           +...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~-~~~~~~~l~l~D~~g~~~-----------~~~~   68 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIE-LDGKKIKLQIWDTAGQER-----------FRTI   68 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEE-ECCEEEEEEEEeCCchHH-----------HHHH
Confidence            378999999999999999999987642222111111  11111222 333  3678999999433           1122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....+..+|++++|+|++++-+-.. ..++..+......+.  |++++.||+|+.+......++         ...+...
T Consensus        69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T cd01867          69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDV--ERMLVGNKCDMEEKRVVSKEE---------GEALADE  137 (167)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence            2234567899999999985433333 334444444332233  999999999986431111111         2334444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+..++.      +|++++.++.+++..+.+.+
T Consensus       138 ~~~~~~~------~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         138 YGIKFLE------TSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            4555555      78888999999999987765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.75  E-value=6.5e-17  Score=127.66  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .+|+++|++|+|||||+|++++..........  ............ .....+.+|||||...           +.....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPT--IGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence            37999999999999999999988753322111  111111111221 1234778999999533           122223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc---cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ..++++|++++|+|++++-+-.. ..++..+......   ....|+++|.||+|.........++         ...+..
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  138 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE  138 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence            34678899999999985433222 3455555544331   1224999999999976320011111         122333


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+++.      .|++++.++.++++++.+.+
T Consensus       139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence            34445555      78888999999999987643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.75  E-value=1.3e-16  Score=125.46  Aligned_cols=160  Identities=19%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|++|+|||||+|++++...........+.+.......+. .....+.+|||||...           +......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQER-----------YRSLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHH-----------HHHHHHH
Confidence            689999999999999999999887633221111111111111111 1234678999999322           2222223


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .+.++|++++|+|+++.-+-.. ..++..+........  |++++.||+|..........+         ...+....+.
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~  138 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNI--IIALVGNKADLESKRQVSTEE---------AQEYADENGL  138 (163)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECccccccCcCCHHH---------HHHHHHHcCC
Confidence            4567899999999983322222 345555555533223  899999999976331011111         2334444455


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+++      .|++++.++.++++++...+
T Consensus       139 ~~~~------~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         139 LFFE------TSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEE------EECCCCCCHHHHHHHHHHHh
Confidence            5555      78888999999999987654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=7.5e-17  Score=147.47  Aligned_cols=162  Identities=22%  Similarity=0.181  Sum_probs=107.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||||+|+|++....... ...+.|....... ..+++..+.+|||||+....   ..+...+.....
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~-~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~  112 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYD-AEWNGRRFTVVDTGGWEPDA---KGLQASVAEQAE  112 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEE-EEECCcEEEEEeCCCcCCcc---hhHHHHHHHHHH
Confidence            468999999999999999999987642222 2334444443333 34678889999999986421   122333444344


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .++..+|++|+|+|++++.+..+..+...+... +    .|+++|+||+|..... ...            ..+. ..+.
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~~-~~~------------~~~~-~~g~  173 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERGE-ADA------------AALW-SLGL  173 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCccc-hhh------------HHHH-hcCC
Confidence            455677999999999977777777777777642 2    2999999999975330 001            1111 1121


Q ss_pred             -ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       ..+      .+||.++.|+++|++++...++.
T Consensus       174 ~~~~------~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        174 GEPH------PVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCeE------EEEcCCCCCcHHHHHHHHhhccc
Confidence             122      47889999999999999877644

>cd04124 RabL2 RabL2 subfamily

Probab=99.75  E-value=6.7e-17  Score=127.04  Aligned_cols=156  Identities=18%  Similarity=0.097  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++++....+......+.+..  ..... .++  ..+.+|||||...           +....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~   66 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAK-FEGKTILVDFWDTAGQER-----------FQTMH   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEE-ECCEEEEEEEEeCCCchh-----------hhhhh
Confidence            36999999999999999999876542221111111111  11111 233  4678999999543           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.++|++++|+|++++.+... ..++..+..... +  .|++++.||+|+...    ..+.        ...+....
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~~  131 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS----VTQK--------KFNFAEKH  131 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh----HHHH--------HHHHHHHc
Confidence            334678899999999985544333 345566655432 2  399999999996422    1111        11222333


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +.+++.      +|++++.+++++++.+.+.+..
T Consensus       132 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         132 NLPLYY------VSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             CCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            444444      7888999999999998766543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01866 Rab2 Rab2 subfamily

Probab=99.75  E-value=1.7e-16  Score=125.65  Aligned_cols=158  Identities=16%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||++++++...........+.+..  ...+. .++  ..+.+|||||...           +....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~   70 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMIT-IDGKQIKLQIWDTAGQES-----------FRSIT   70 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEE-ECCEEEEEEEEECCCcHH-----------HHHHH
Confidence            78999999999999999999987652222221122211  11122 233  4689999999322           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|++++-+-.. ..++..++.......  |++++.||.|.........++         ...+....
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  139 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNM--TIMLIGNKCDLESRREVSYEE---------GEAFAKEH  139 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence            334567899999999984333332 234444444322223  899999999976431111111         23334444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +..++.      .|+..+.++++++.++...+
T Consensus       140 ~~~~~e------~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         140 GLIFME------TSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            555554      78888899999998887665

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04122 Rab14 Rab14 subfamily

Probab=99.74  E-value=1.1e-16  Score=126.48  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .+|+++|++|+|||||++++.+.......    ..|.....  .... .++  ..+.+|||||...           +..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~   66 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQER-----------FRA   66 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHH
Confidence            68999999999999999999977542221    22222111  1112 333  3678999999432           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .....++++|++++|+|++++-+-.. ..++..+.......  .|++++.||+|+...  ..+..       .....+..
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~  135 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY-------EEAKQFAD  135 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHH
Confidence            23334678899999999985433333 23444443332222  389999999997644  11110       01233344


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+..++.      +|++++.|+.+++..+...+
T Consensus       136 ~~~~~~~e------~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         136 ENGLLFLE------CSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             HcCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence            44455555      78889999999998876544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01864 Rab19 Rab19 subfamily

Probab=99.74  E-value=1.8e-16  Score=125.12  Aligned_cols=158  Identities=16%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .++|+|+|++|+|||||++++.+.........  ..+.......+. .++  ..+.+|||||...           +...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGVDFTMKTLE-IEGKRVKLQIWDTAGQER-----------FRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccceEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHH
Confidence            47899999999999999999987654222111  111222222222 344  3679999999322           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....++.+|++++|+|++++-+-.. ..++..+........  |+++|.||+|+.........+         ...+...
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNV--VLLLIGNKCDLEEQREVLFEE---------ACTLAEK  137 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccccCHHH---------HHHHHHH
Confidence            2334567899999999985433333 345555554322233  899999999976441111111         2334444


Q ss_pred             cCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+. .+++      +|++++.+++++++.+.+.
T Consensus       138 ~~~~~~~e------~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         138 NGMLAVLE------TSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cCCcEEEE------EECCCCCCHHHHHHHHHHh
Confidence            343 2343      7888999999999988653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=99.74  E-value=1.4e-16  Score=125.17  Aligned_cols=156  Identities=21%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||++++++.........  ..+......... .++  ..+.+|||||...           +....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~~~   66 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQH--TIGVEFGSKIIR-VGGKRVKLQIWDTAGQER-----------FRSVT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEE-ECCEEEEEEEEECcchHH-----------HHHhH
Confidence            3799999999999999999997765222211  111111111122 223  4678999999533           11122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...++.+|++++|+|++++.+... ..++..+......+.  |++++.||+|..........+         ...+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~  135 (161)
T cd04113          67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQEN  135 (161)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHc
Confidence            233567899999999985444333 334444444433333  999999999976431011111         23344444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +..++.      .|++++.++.++++++.+
T Consensus       136 ~~~~~~------~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         136 GLLFLE------TSALTGENVEEAFLKCAR  159 (161)
T ss_pred             CCEEEE------EECCCCCCHHHHHHHHHH
Confidence            555555      788889999999998865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=1.9e-16  Score=141.01  Aligned_cols=166  Identities=19%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      .|+|+|.+|||||||+|+|++...  .....+..|.......+...++..++++||||+.........+...+.+.+.  
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie--  235 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE--  235 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence            799999999999999999998764  2222223344443333332236789999999997633322334445544443  


Q ss_pred             CCCccEEEEEEecCCC---CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188          101 KDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                        +++++++|+|+++.   -...+ ..+...|......-..+|.++|+||+|+...  .   +.        +..+....
T Consensus       236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~---e~--------l~~l~~~l  300 (424)
T PRK12297        236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--E---EN--------LEEFKEKL  300 (424)
T ss_pred             --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--H---HH--------HHHHHHHh
Confidence              45999999999732   11122 3344455443221123599999999996322  1   11        22233333


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +..+++      +|+.++.++++|++++...+...
T Consensus       301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        301 GPKVFP------ISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCcEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence            334444      78888999999999999887654

>cd04112 Rab26 Rab26 subfamily

Probab=99.74  E-value=1.4e-16  Score=128.85  Aligned_cols=161  Identities=17%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|.+|+|||||++++++........   ..|...... .....++  ..+.||||||-..           +...
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~   66 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF---IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSV   66 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc---CCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHh
Confidence            369999999999999999998766422111   112111111 1112333  4678999999322           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....+..+|++++|+|++++-+... ..++..+.+......  |++++.||+|+.........         ....+...
T Consensus        67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~  135 (191)
T cd04112          67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV--VIMLLGNKADMSGERVVKRE---------DGERLAKE  135 (191)
T ss_pred             hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEEcccchhccccCHH---------HHHHHHHH
Confidence            2334677899999999985433332 345555655543333  99999999997533101111         12334444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+.+++.      +|++++.++++|+.++...+...
T Consensus       136 ~~~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         136 YGVPFME------TSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             cCCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence            4555555      78889999999999998877653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.74  E-value=1.7e-17  Score=141.21  Aligned_cols=212  Identities=17%  Similarity=0.208  Sum_probs=123.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCC--------------CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~--~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +|+|+|++|+|||||+|+|++.....  .+...              .+.+.......+. +++..+++|||||..++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHH--
Confidence            48999999999999999997532110  11000              1222222333333 67889999999997542  


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~  164 (301)
                           ..+...++    ..+|++++|+|++.+........++.+... +.    |.++++||+|....   ...+.+.  
T Consensus        78 -----~~~~~~~l----~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~~----p~iivvNK~D~~~~---~~~~~~~--  138 (268)
T cd04170          78 -----VGETRAAL----RAADAALVVVSAQSGVEVGTEKLWEFADEA-GI----PRIIFINKMDRERA---DFDKTLA--  138 (268)
T ss_pred             -----HHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCccCCC---CHHHHHH--
Confidence                 12333343    355999999999966666666666655432 33    89999999997644   2333333  


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc-CC-----CCCchHHHHHHHHHHHhHHHHHHHH
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN-GG-----QPYTDELKRGATELRDKKAEVDSLK  238 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                            .+...++.+++++.-+.    ..+.++..+++.+......+ .+     ...+.++...+++.  +...++.+.
T Consensus       139 ------~l~~~~~~~~~~~~ip~----~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~l~e~~a  206 (268)
T cd04170         139 ------ALQEAFGRPVVPLQLPI----GEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA  206 (268)
T ss_pred             ------HHHHHhCCCeEEEEecc----cCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHH--HHHHHHHHh
Confidence                  33344465655543221    12344444444443322111 11     12344555555554  555677788


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188          239 EYSKREISKLMGQMQESYEDRIKRMAEM  266 (301)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (301)
                      +.+++.++++.++.+...++..+.+++.
T Consensus       207 ~~dd~l~e~yl~~~~~~~~~l~~~l~~~  234 (268)
T cd04170         207 ETDDELMEKYLEGGELTEEELHAGLRRA  234 (268)
T ss_pred             hCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            8888899988876655544444444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01861 Rab6 Rab6 subfamily

Probab=99.74  E-value=1.8e-16  Score=124.49  Aligned_cols=156  Identities=16%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+++|++|+|||||+|++++.......  ....+......... .++  ..+.+|||||...           ......
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~~-----------~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMY-LEDKTVRLQLWDTAGQER-----------FRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            7999999999999999999988763321  12222222222222 334  3589999999432           122223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+..+|++++|+|++++-+... ..++..+....+.+  .|+++++||+|.........++         ...+....+
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~  136 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN  136 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence            33567799999999985433333 34444444443322  3999999999985331111111         222333344


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..++.      .|+.++.++++++.++.+.
T Consensus       137 ~~~~~------~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         137 AMFIE------TSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CEEEE------EeCCCCCCHHHHHHHHHHh
Confidence            44554      7888889999999998653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.74  E-value=9.7e-17  Score=126.84  Aligned_cols=159  Identities=16%  Similarity=0.139  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .|+|+|++|+|||||+|+|++......  ...+.|...........  .+..+.+|||||....           .....
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHHH
Confidence            599999999999999999997765222  12233433333333311  3678999999995431           11112


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  177 (301)
                      ..+..+|++++|+|+++.........+..+.. .+.    |+++++||+|........+...+..     +.... ...+
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~  138 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-ANV----PFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG  138 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cCC----CEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence            23456799999999986555555555555543 232    8999999999764311111111111     00000 0111


Q ss_pred             --CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                        .+++      ++|+..+.++.+|++++....
T Consensus       139 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         139 GDVQIV------PTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             CcCcEE------EeecccCCCHHHHHHHHHHhh
Confidence              1233      378888899999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.74  E-value=2.8e-16  Score=128.13  Aligned_cols=168  Identities=20%  Similarity=0.213  Sum_probs=96.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK--   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~--   95 (301)
                      ...+|+++|++|+|||||+|+|+|... ..+. ..+.|....  ... +.  .+.+|||||++..........+.+..  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~~--~~~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKPN--HYD-WG--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCce--EEe-ec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            347899999999999999999998764 2221 123333222  122 22  68999999986644433222222222  


Q ss_pred             --HHhccCCCccEEEEEEecCCCCC-----------HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188           96 --CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        96 --~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~  162 (301)
                        ++......++++++|+|.+....           ..+...+..+... +    .|+++|+||+|+...  .  .+.. 
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~----~p~iiv~NK~Dl~~~--~--~~~~-  150 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-G----IPPIVAVNKMDKIKN--R--DEVL-  150 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-C----CCeEEEEECccccCc--H--HHHH-
Confidence              22223346689999999863211           1223334444332 2    299999999997644  2  1111 


Q ss_pred             ccCCchHHHHHHHcCC--ceEEe-cCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       163 ~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                             ..+....+.  .+..+ .....+||+++ |+++++++|...+..
T Consensus       151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence                   122222221  10000 01234899999 999999999887654

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.74  E-value=2.1e-16  Score=124.77  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++.......  ....+.......+. .++  ..+.+|||||...           +....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQER-----------FRTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcHh-----------HHHHH
Confidence            68999999999999999999976642211  11222222222222 333  3678999999433           12222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...++.+|++++|+|++++-+-.. ..++..+.......  .|++++.||+|.........++         ...+....
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~  137 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL  137 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence            334577899999999984333222 23444444432222  3999999999976441111111         22333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.++++      .|++++.++.+++..+.+.+
T Consensus       138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         138 GIPFLE------TSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             CCeEEE------EECCCCcCHHHHHHHHHHHH
Confidence            555665      78888899999999987655

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.74  E-value=4.4e-17  Score=128.77  Aligned_cols=159  Identities=14%  Similarity=0.056  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccC--CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+|+|++|+|||||+|+|++......+.  .....|.......+. .++..+.+|||||....           .....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQESL-----------RSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChhh-----------HHHHH
Confidence            48999999999999999998754321111  111223333333333 56789999999996542           11222


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+.++|++++|+|++++-+... ...+..+..... ....|+++++||+|....  ....+....     +.......+
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~~  140 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEIG  140 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHH-----hcccccccc
Confidence            33567899999999983322111 222222222111 112399999999997644  322221111     111111111


Q ss_pred             ---CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          178 ---NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       178 ---~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                         ..++      ..|++++.|+++++++|.
T Consensus       141 ~~~~~~~------~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         141 RRDCLVL------PVSALEGTGVREGIEWLV  165 (167)
T ss_pred             CCceEEE------EeeCCCCcCHHHHHHHHh
Confidence               2233      378899999999999885

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04140 ARHI_like ARHI subfamily

Probab=99.74  E-value=1.2e-16  Score=126.07  Aligned_cols=160  Identities=19%  Similarity=0.165  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|.+|+|||||++++++...........+.+ ........ .....+.+|||||.....           .....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence            679999999999999999999876422222211211 11111111 233567899999976531           11122


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ++..+|++++|+|++++-+... ..++..+.+..+.. ...|+++|.||+|....  ..+....       ...+....+
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~  139 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN  139 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence            3457799999999985544443 44556666654321 22399999999997643  1111100       111222233


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..++.      +||+++.++++++++|..+
T Consensus       140 ~~~~e------~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         140 CAFME------TSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CcEEE------eecCCCCCHHHHHHHHHhc
Confidence            34444      8899999999999998654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=1.9e-16  Score=142.72  Aligned_cols=169  Identities=16%  Similarity=0.141  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      -.|+|+|.+|||||||+|+|++...  . .+..+.|+...........+..++++||||+.........+..++.+.+  
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akp--k-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--  234 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKP--K-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--  234 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCc--c-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence            3699999999999999999998754  2 2233333333233333356778999999999764332333444444443  


Q ss_pred             cCCCccEEEEEEecCCCC----CHHHH-HHHHHHHHhhC---------ccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188          100 AKDGIHAFLVVFSVTNRF----SQEEE-TAVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~----~~~~~-~~l~~l~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~  165 (301)
                        ..++++++|+|+++..    ...+. .+...|.....         .-..+|+++|+||+|+...  ..+.+.+    
T Consensus       235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l----  306 (500)
T PRK12296        235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV----  306 (500)
T ss_pred             --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence              4559999999997311    11121 22223332221         1123499999999997644  2222222    


Q ss_pred             CchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                          ...+...+.++++      +|+.++.++++|+.+|...+...
T Consensus       307 ----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        307 ----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             ----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhh
Confidence                2223333445555      78888999999999998887654

>cd04142 RRP22 RRP22 subfamily

Probab=99.73  E-value=4.3e-16  Score=126.35  Aligned_cols=171  Identities=16%  Similarity=0.117  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .+|+|+|.+|+|||||++++++.......    .+|+.  ....... +++  ..+.+|||||........   .++...
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~----~pt~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~   72 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY----IPTEHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPGTA---GQEWMD   72 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc----CCccccccceeEEE-ECCEEEEEEEEeCCCcccCCccc---hhHHHH
Confidence            36999999999999999999986642211    12221  1111122 455  467899999986543211   122222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .....+..+|++++|+|++++.+-.. ..+++.+.+... .....|++++.||+|+...  .....       ..+..+.
T Consensus        73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~-------~~~~~~~  143 (198)
T cd04142          73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPR-------HVLSVLV  143 (198)
T ss_pred             HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccH-------HHHHHHH
Confidence            22233567899999999985443333 334444444321 0112399999999997543  11110       0022222


Q ss_pred             H-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188          174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (301)
Q Consensus       174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  213 (301)
                      . ..+..++.      +|++++.++++|++.+...+...+.
T Consensus       144 ~~~~~~~~~e------~Sak~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         144 RKSWKCGYLE------CSAKYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             HHhcCCcEEE------ecCCCCCCHHHHHHHHHHHhhccCC
Confidence            2 22344554      8899999999999999877655443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.73  E-value=1.8e-16  Score=123.97  Aligned_cols=155  Identities=20%  Similarity=0.259  Sum_probs=95.8

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (301)
Q Consensus        24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
                      |+|++|+|||||+|++++.......  ..+.|.......+. +++..+.+|||||+.+.......  ..+....... .+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence            5899999999999999987632221  22334444333334 56778999999998765432211  1122221111 58


Q ss_pred             ccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEe
Q 022188          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (301)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (301)
                      +|++++|+|+.. ... ...++..+.. .+    .|+++++||+|....  ..+...        ...+....+.++++ 
T Consensus        75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~~-  136 (158)
T cd01879          75 PDLIVNVVDATN-LER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVVP-  136 (158)
T ss_pred             CcEEEEEeeCCc-chh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeEE-
Confidence            899999999983 222 2233333332 22    399999999998654  222211        22333334545555 


Q ss_pred             cCCCcccccchhHHHHHHHHHHHH
Q 022188          184 DNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                           .|+..+.++.++++++...
T Consensus       137 -----iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         137 -----TSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             -----EEccCCCCHHHHHHHHHHH
Confidence                 7888889999999988765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.73  E-value=2e-16  Score=124.48  Aligned_cols=159  Identities=20%  Similarity=0.201  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++.......  ....+......... .++  ..+.+|||||...           +....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHH
Confidence            37999999999999999999987652211  11122222222222 344  3678999999432           11222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|++++-+... ..++..+....+...  |++++.||+|....  ..+.       .+....+....
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~--pivvv~nK~D~~~~--~~~~-------~~~~~~~~~~~  135 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNV--VIMLVGNKSDLEDQ--RQVS-------REEAEAFAEEH  135 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcccc--cCCC-------HHHHHHHHHHc
Confidence            233567799999999984433333 234444444332223  99999999997643  1111       01123344455


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..++.      .|+..+.+++++++.+...+.
T Consensus       136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      136 GLPFFE------TSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence            655555      677788999999999987653

Rab GTPases are implicated in vesicle trafficking.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=4.5e-16  Score=148.80  Aligned_cols=174  Identities=19%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+|+|++|+|||||+|+|++.....  ....+.|+.........+++..+.+|||||+.......  ...+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~--~~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL--TGAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence            34799999999999999999999987421  22223333333222333678889999999986532221  112222222


Q ss_pred             --hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                        ..+++.+|++++|+|++.+.+..+...+..+... +    .|+++|+||+|+...  .....+...     +...+..
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~  592 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR  592 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence              1235778999999999988888887766655442 2    299999999998644  222211111     1111111


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      .     .+.+....||+++.|+.+|++.+........
T Consensus       593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            1     1111233799999999999999998876543

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.73  E-value=3e-16  Score=123.50  Aligned_cols=158  Identities=22%  Similarity=0.175  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++.......    ..|...........++  ..+.+|||||..+..           ...
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~   67 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-----------AMR   67 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEECCEEEEEEEEECCCCcchh-----------HHH
Confidence            68999999999999999999976542111    1222211111112344  357899999965531           112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...++.+|++++|+|++++-+... ..++..+...... ...|++++.||+|+...  ..+...  .     ...+....
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~~  137 (164)
T cd04145          68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARKL  137 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHHc
Confidence            223456799999999984433332 2333444333211 12399999999997643  111110  0     22333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +..++.      +|++++.+++++++.+...+
T Consensus       138 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         138 KIPYIE------TSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCcEEE------eeCCCCCCHHHHHHHHHHhh
Confidence            445554      78888999999999886543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01868 Rab11_like Rab11-like

Probab=99.73  E-value=3.8e-16  Score=123.15  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++.......  .+..+.......+. .++  ..+.+|||||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHHHH
Confidence            68999999999999999999987652211  12222222222222 334  3678999999432           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..++++++|+|++++.+... ..++..+.+.....  .|++++.||.|+........++         ...+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~  138 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN  138 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence            334567799999999984444333 33555555543322  3999999999975431011111         22333333


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +..++.      .|++++.+++++++.+...
T Consensus       139 ~~~~~~------~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         139 GLSFIE------TSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             CCEEEE------EECCCCCCHHHHHHHHHHH
Confidence            444554      7888899999999998654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=2.2e-16  Score=143.64  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|.+|+|||||+|+|+|........ ..+.|....... ..+++..+.+|||||+.+..   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~-~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGE-AEWLGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEE-EEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            479999999999999999999887522221 233444433333 33678899999999998722   1233333333344


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      ++..+|++++|+|+..+++..+.....+++.. +.    |+++++||+|..... ...            .++. ..+..
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~~----piilv~NK~D~~~~~-~~~------------~~~~-~lg~~  137 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-NK----PVILVVNKVDGPDEE-ADA------------YEFY-SLGLG  137 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCccch-hhH------------HHHH-hcCCC
Confidence            45677999999999978888887777777764 33    999999999954320 111            1111 12221


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                           .....|+..+.++.++++.+..
T Consensus       138 -----~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        138 -----EPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             -----CCEEEEeeCCCCHHHHHHHHHh
Confidence                 1223688888899998888866

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.73  E-value=4.8e-16  Score=128.15  Aligned_cols=161  Identities=14%  Similarity=0.031  Sum_probs=99.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ....+|+++|.+|+|||||+++++............+.+..  ...+.. .....+.+|||||...+           ..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~   77 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKF-----------GG   77 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence            45689999999999999999998755431111111111111  111221 12357899999995542           12


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+++++|++|+|+|++++.+-.. ..++..+..... +.  |+++|.||+|+...  ....+.        + .+..
T Consensus        78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~~--------~-~~~~  143 (219)
T PLN03071         78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NI--PIVLCGNKVDVKNR--QVKAKQ--------V-TFHR  143 (219)
T ss_pred             hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CC--cEEEEEEchhhhhc--cCCHHH--------H-HHHH
Confidence            22234678899999999995544443 345555555432 23  99999999997532  111111        1 2223


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +||+++.++.+++.++...+..
T Consensus       144 ~~~~~~~e------~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        144 KKNLQYYE------ISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             hcCCEEEE------cCCCCCCCHHHHHHHHHHHHHc
Confidence            33445554      7899999999999999877653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.73  E-value=1.3e-15  Score=137.18  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+.+|+|+|++|+|||||+|+|++.....  .+..+.|+.........+++..+.+|||||+.+...   .+...-....
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~---~ie~~gi~~~  276 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD---FVERLGIEKS  276 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh---HHHHHHHHHH
Confidence            45799999999999999999999875421  222333333322222336788999999999876432   1111111112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ..++..+|++++|+|++++.+..+. ++..+..   ..  .|+++|+||+|+.
T Consensus       277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~  323 (442)
T TIGR00450       277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK  323 (442)
T ss_pred             HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence            2345678999999999866665554 4333322   12  2899999999975

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04120 Rab12 Rab12 subfamily

Probab=99.73  E-value=2.1e-16  Score=128.33  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .|+++|..|+|||||++++..... .... ....+.......+. .++  ..+.+|||+|...           +.....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~-~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe~-----------~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTF-CEAC-KSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-----------FNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC-CCcC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCchh-----------hHHHHH
Confidence            589999999999999999986654 2211 11111122222222 344  5679999999433           222234


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (301)
                      .+++++|++++|+|++++-+-.. ..++..+......+.  |+++|.||+|+...  ..+....       ...+.... 
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~--piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~  136 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT  136 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence            45778899999999996555444 345555555433333  99999999997543  1111110       11222222 


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      +||+++.++.+++.++...+..
T Consensus       137 ~~~~~e------tSAktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         137 GMRFCE------ASAKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence            333443      8899999999999999876543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04109 Rab28 Rab28 subfamily

Probab=99.73  E-value=2.2e-16  Score=130.02  Aligned_cols=161  Identities=22%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .+|+|+|.+|+|||||++++++.....    ...+|.....  ......+  ...+.+|||||...           ...
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~----~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~   65 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGK----SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK   65 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCC----CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence            369999999999999999999765421    1122332221  2222112  35788999999322           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ....++.++|++++|+|++++-+-.. ..++..+...... ....|+++|.||+|+...  ..+..       .....+.
T Consensus        66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~-------~~~~~~~  136 (215)
T cd04109          66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKD-------DKHARFA  136 (215)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCH-------HHHHHHH
Confidence            23334678899999999985434333 3455666655432 111278999999997633  11110       0123344


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +||+++.+++++++++...+..
T Consensus       137 ~~~~~~~~~------iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         137 QANGMESCL------VSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             HHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence            444544444      7899999999999999877654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04121 Rab40 Rab40 subfamily

Probab=99.72  E-value=3.4e-16  Score=125.83  Aligned_cols=163  Identities=13%  Similarity=0.136  Sum_probs=105.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|..|+|||||+.++.+... .... ....+.......+. .++  ..+.+|||||...           +...
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~~-----------~~~l   71 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQGR-----------FCTI   71 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HHHH
Confidence            47899999999999999999986543 2111 11112222112222 344  4678999999543           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...+++++|++|+|+|++++.+-.. ..++..+..... .+  |++||.||.|+........++         .+.+...
T Consensus        72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~--piilVGNK~DL~~~~~v~~~~---------~~~~a~~  139 (189)
T cd04121          72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GV--PKILVGNRLHLAFKRQVATEQ---------AQAYAER  139 (189)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccchhccCCCHHH---------HHHHHHH
Confidence            3345678899999999996555555 446666655433 33  999999999975431011111         3344455


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  213 (301)
                      .+..++.      +||+++.+++++++++.+.+....+
T Consensus       140 ~~~~~~e------~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         140 NGMTFFE------VSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             cCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5556665      8999999999999999877655444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04154 Arl2 Arl2 subfamily

Probab=99.72  E-value=1.9e-16  Score=126.01  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .....+|+++|++|+|||||++++++....  .   ...|......... .++..+.+|||||...           +..
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~---~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~   73 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID--T---ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRP   73 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC--C---cCCccccceEEEE-ECCEEEEEEECCCCHH-----------HHH
Confidence            345589999999999999999999987431  1   1122222222222 4577889999999543           111


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ....++.++|++++|+|++++-+-.. ..++..+ ......+  .|+++++||+|+...  ...++         +...+
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~---------~~~~~  140 (173)
T cd04154          74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAG--ATLLILANKQDLPGA--LSEEE---------IREAL  140 (173)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcC--CCEEEEEECcccccC--CCHHH---------HHHHh
Confidence            22334567899999999984422222 2222222 2111122  399999999997644  22221         11111


Q ss_pred             HH-----cCCceEEecCCCcccccchhHHHHHHHHHH
Q 022188          174 QL-----CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       174 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ..     .+.+++      .+||+++.|++++++++.
T Consensus       141 ~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         141 ELDKISSHHWRIQ------PCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             CccccCCCceEEE------eccCCCCcCHHHHHHHHh
Confidence            11     112233      378999999999999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01889 SelB_euk SelB subfamily

Probab=99.72  E-value=1.3e-16  Score=129.11  Aligned_cols=166  Identities=19%  Similarity=0.248  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEeEEEEe-------------eCCeeEEEEeCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD   81 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~---~~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~liDtPG~~~   81 (301)
                      .+|+++|++|+|||||++++++..   .+...  ....+.|..........             ..+..+.+|||||..+
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            369999999999999999999731   11010  00112333333322221             1256889999999632


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                             ....+.    .....+|++++|+|+..+.+......+... ...+.    |+++++||+|....  .......
T Consensus        81 -------~~~~~~----~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~~----~~iiv~NK~Dl~~~--~~~~~~~  142 (192)
T cd01889          81 -------LIRTII----GGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILCK----KLIVVLNKIDLIPE--EERERKI  142 (192)
T ss_pred             -------HHHHHH----HHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcCC----CEEEEEECcccCCH--HHHHHHH
Confidence                   122222    223556999999999866655554444433 22333    89999999998744  3333222


Q ss_pred             cccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          162 GHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .. ....+...+...   +.++++      .|++++.|+++|++.+...++.
T Consensus       143 ~~-~~~~l~~~~~~~~~~~~~vi~------iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         143 EK-MKKKLQKTLEKTRFKNSPIIP------VSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HH-HHHHHHHHHHhcCcCCCCEEE------EeccCCCCHHHHHHHHHhcccc
Confidence            22 111122222211   223444      8889999999999999877643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.72  E-value=6.3e-16  Score=121.91  Aligned_cols=163  Identities=19%  Similarity=0.273  Sum_probs=98.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh---
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---   98 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---   98 (301)
                      |+++|++|+|||||+|+|++...........+.|......    .....+++|||||+.....+... .+.+...+.   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~-~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSKEV-KEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCHHH-HHHHHHHHHHHH
Confidence            8999999999999999999543322222222333322221    12238899999998876443211 122222211   


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH--Hc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ--LC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--~~  176 (301)
                      .....++++++++|.....+......++++... +    .|+++++||+|....  .........     +...+.  ..
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence            223456889999999856666666666666653 3    289999999998654  333322222     233332  12


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..++++      .|++++.++.++++++...
T Consensus       145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPIIL------FSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCceEE------EecCCCCCHHHHHHHHHHh
Confidence            234444      6777788999999988654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01890 LepA LepA subfamily

Probab=99.72  E-value=9.8e-17  Score=128.27  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCc------cccCC-------CCCcceeeEeEEEE----eeCCeeEEEEeCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAF------KASAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~------~~~~~-------~~~~t~~~~~~~~~----~~~~~~~~liDtPG~~~~   82 (301)
                      ++|+++|++|+|||||++++++....      .....       ..+.+.........    ...+..+.+|||||..++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            46999999999999999999874310      00000       01222222211111    123456889999997653


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~  162 (301)
                      .       ....    .++.++|++++|+|++++.+..+...+..+.. .  ..  |+++++||+|....  . ..... 
T Consensus        81 ~-------~~~~----~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~--~~--~iiiv~NK~Dl~~~--~-~~~~~-  140 (179)
T cd01890          81 S-------YEVS----RSLAACEGALLLVDATQGVEAQTLANFYLALE-N--NL--EIIPVINKIDLPSA--D-PERVK-  140 (179)
T ss_pred             H-------HHHH----HHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-c--CC--CEEEEEECCCCCcC--C-HHHHH-
Confidence            1       1222    23456799999999986666555544443332 1  22  89999999997533  1 11111 


Q ss_pred             ccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                             ..+....+...   ......|++++.++++|++++...++
T Consensus       141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence                   12222223210   11124888999999999999976653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.72  E-value=5.4e-16  Score=121.65  Aligned_cols=156  Identities=18%  Similarity=0.154  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||+|++++.......    ..|...........++  ..+.+|||||....           ....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEECCEEEEEEEEECCCCcch-----------HHHH
Confidence            57999999999999999999976642221    1121111111112344  34678999995442           1112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..++++++|++++++-+-.. ..++..+...... ...|++++.||+|....  ......        ...+....
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~  135 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY  135 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence            223456799999999984333233 2344444443221 12399999999997643  111111        22333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +..++.      +|++++.|++++++++.+.
T Consensus       136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         136 GIPYIE------TSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence            555555      7888999999999988654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04110 Rab35 Rab35 subfamily

Probab=99.72  E-value=3e-16  Score=127.69  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=97.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||++++.+......-..  ..........+. ..+  ..+.+|||||....           ...
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~~-----------~~~   71 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT--TIGVDFKIRTVE-INGERVKLQIWDTAGQERF-----------RTI   71 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCc--cccceeEEEEEE-ECCEEEEEEEEeCCCchhH-----------HHH
Confidence            47899999999999999999997764211111  111111111222 233  36789999994331           112


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++.+++++++|+|++++-+-.. ..++..+....+ .  .|+++|.||+|+...  ..+...       ....+...
T Consensus        72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~--~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~~  139 (199)
T cd04110          72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-D--VCKVLVGNKNDDPER--KVVETE-------DAYKFAGQ  139 (199)
T ss_pred             HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cccCHH-------HHHHHHHH
Confidence            2334567899999999985443333 334555544432 2  389999999997643  111100       02233344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|+.++.++.++++++...+.
T Consensus       140 ~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~  167 (199)
T cd04110         140 MGISLFE------TSAKENINVEEMFNCITELVL  167 (199)
T ss_pred             cCCEEEE------EECCCCcCHHHHHHHHHHHHH
Confidence            4555555      788889999999999987654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=5.7e-16  Score=131.58  Aligned_cols=154  Identities=22%  Similarity=0.279  Sum_probs=102.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEE-eeCC--eeEEEEeCCCCCCCCCCcHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFV   89 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~-~~~~--~~~~liDtPG~~~~~~~~~~~   89 (301)
                      ..+|+|+|++|+|||||+|+|++.........      ....|......... ..++  ..+++||||||++.... ...
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~   82 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC   82 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence            37899999999999999999999887544321      12334333322221 1344  36899999999986532 222


Q ss_pred             HHHHHHHHh----------------cc--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           90 GKEIVKCLG----------------MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        90 ~~~~~~~~~----------------~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ++.+..++.                ..  ...+|+++|+++.+ .++...+...++.+..    .+  |+++|+||+|..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCcC
Confidence            333332111                11  23589999999987 4677777777777764    22  899999999987


Q ss_pred             CCccccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188          151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (301)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (301)
                      ..  ..+..+...     +.+.+...+.+++.|...
T Consensus       157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence            65  455555554     777788888888876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.72  E-value=3.6e-16  Score=127.43  Aligned_cols=160  Identities=14%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      .+|+|+|.+|+|||||++++++......    ...|....  ...+. .+   ...+.+|||||...           +.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~-~~~~~~~~l~l~Dt~G~~~-----------~~   64 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIE-WDPNTVVRLQLWDIAGQER-----------FG   64 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEE-ECCCCEEEEEEEECCCchh-----------hh
Confidence            3699999999999999999997654221    12232211  11222 22   34678999999533           11


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC--ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      .....+++++|++++|+|++++.+-.. ..++..+.....  .....|+++|.||+|+........++         +..
T Consensus        65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~  135 (201)
T cd04107          65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQ  135 (201)
T ss_pred             hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHH
Confidence            222334678899999999985443333 233344443221  11223999999999976321011111         334


Q ss_pred             HHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +....+ ..++.      +|++++.+++++++++...+..
T Consensus       136 ~~~~~~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         136 FCKENGFIGWFE------TSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            444444 34444      7888999999999999876644

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.72  E-value=1.2e-16  Score=127.24  Aligned_cols=161  Identities=21%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 022188           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (301)
Q Consensus        24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
                      |+|++|||||||+|+|++... ... ...+.|......... ++ +..+.+|||||+.+.....+.+...+..    .+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVA-NYPFTTLEPNLGVVE-VPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-ccc-CCCceeecCcceEEE-cCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            589999999999999999864 111 112233333333233 55 7889999999986532211112222222    234


Q ss_pred             CccEEEEEEecCCCC------CHHH-HHHHHHHHHhhCc-----cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188          103 GIHAFLVVFSVTNRF------SQEE-ETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus       103 ~~~~il~v~~~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                      ++|++++|+|+.++.      +..+ ..+...+......     ....|+++|+||+|....  ........       .
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~  144 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R  144 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence            579999999998442      2222 2233333322110     012499999999998655  33322210       1


Q ss_pred             HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ......+..++.      +|++.+.+++++++.+..
T Consensus       145 ~~~~~~~~~~~~------~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         145 ELALEEGAEVVP------ISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             HHhcCCCCCEEE------EehhhhcCHHHHHHHHHh
Confidence            111222344454      788888999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.72  E-value=7.6e-16  Score=122.34  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|..|+|||||++++.+......    ..+|...........++  ..+.+|||||....           ....
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDY----HDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-----------TAMR   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCC----cCCcccceEEEEEEECCEEEEEEEEeCCCchhh-----------HHHh
Confidence            6899999999999999999987654221    11222211111112344  35789999995442           2222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.++|++++|+|++++.+-... .++..+..... ....|+++|.||+|+...  ..+....       ...+....
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~  137 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF  137 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence            3345678999999999966665553 34445554321 112399999999997543  2221111       12333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +.+++.      +||+.+.+++++++++...+..
T Consensus       138 ~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         138 NCPFFE------TSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             CCEEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence            555555      8888999999999999765543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=4.6e-16  Score=126.24  Aligned_cols=171  Identities=20%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV---TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|++|+|||||+|+|+|......+....+.   |.....  +.......+.+|||||+.+......    ++...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence            57999999999999999999997654333322221   211111  1112245789999999987543322    22222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc-------cHHHHhcccCCchH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL  169 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~~~~~~~~~~~~~l  169 (301)
                      +  .+.+.|+++++.+  .+++..+..+++.++.. +.    |+++|+||+|.......       ..++.+.. ....+
T Consensus        76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~  145 (197)
T cd04104          76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC  145 (197)
T ss_pred             h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence            2  2567788888754  37888898888888775 43    89999999998643100       12333433 22223


Q ss_pred             HHHHHHcC---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          170 KEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       170 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+...+   .++++.+....    .+.++..|.+.+...++.
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence            33443322   35566333321    346788888888777765

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.72  E-value=3.6e-16  Score=123.95  Aligned_cols=159  Identities=16%  Similarity=0.074  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +|+++|.+|+|||||++++.+..... .   ..+|.....  ..+. .++  ..+.+|||||...           +...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~-~---~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDK-N---YKATIGVDFEMERFE-ILGVPFSLQLWDTAGQER-----------FKCI   65 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-C---CCCceeeEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhh
Confidence            68999999999999999999876421 1   122322221  1122 233  4689999999533           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHh-hCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~-~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++++|++++|+|++++-+... ..++..+.+. .+..  .|+++|.||.|+...  ........     ....+..
T Consensus        66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~--~~~~~~~~-----~~~~~~~  136 (170)
T cd04108          66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSP--AQYALMEQ-----DAIKLAA  136 (170)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCcc--ccccccHH-----HHHHHHH
Confidence            2334678899999999984322222 3344444332 2222  278999999997543  11110000     0223334


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.++.++++.+...+.+
T Consensus       137 ~~~~~~~e------~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         137 EMQAEYWS------VSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence            44445554      7888999999999999877644

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.72  E-value=2.6e-16  Score=124.00  Aligned_cols=160  Identities=14%  Similarity=0.131  Sum_probs=97.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
                      |+++|.+|+|||||++++.+.......    .+|......... ..+..+.+|||||.....           .....++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i~-~~~~~l~i~Dt~G~~~~~-----------~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAIP-TQDAIMELLEIGGSQNLR-----------KYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEEe-eCCeEEEEEECCCCcchh-----------HHHHHHH
Confidence            899999999999999999977542211    112111122222 456789999999965421           1112235


Q ss_pred             CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188          102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (301)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (301)
                      +++|++++|+|.+++.+-.. +.++..+....   ...|++++.||.|+...  ..+.+.... ..  +..+....+..+
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~~~  137 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAA--RSVQEIHKE-LE--LEPIARGRRWIL  137 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCC--CCHHHHHHH-hC--ChhhcCCCceEE
Confidence            67799999999985432222 22333332211   22399999999997654  333332211 00  233333334445


Q ss_pred             EEecCCCcccccchhHHHHHHHHHH
Q 022188          181 VLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      +.......+|+.++.++.++++.+.
T Consensus       138 ~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         138 QGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EEeeecCCCChhHHHHHHHHHHHHh
Confidence            5555667788888999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN03110 Rab GTPase; Provisional

Probab=99.72  E-value=5.3e-16  Score=127.73  Aligned_cols=162  Identities=15%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+++|++|+|||||++++++.........  ..........+. .++  ..+.||||||...           +..
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~--t~g~~~~~~~v~-~~~~~~~l~l~Dt~G~~~-----------~~~   76 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQ-VEGKTVKAQIWDTAGQER-----------YRA   76 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHH
Confidence            347999999999999999999998765222111  111111112222 333  4778999999332           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+++.++++++|+|.+++-+... ..++..+......+.  |++++.||+|+...  ..+....       ...+..
T Consensus        77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~~--~~~~~~~-------~~~l~~  145 (216)
T PLN03110         77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNHL--RSVAEED-------GQALAE  145 (216)
T ss_pred             HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhcccc--cCCCHHH-------HHHHHH
Confidence            33345678899999999985443333 345555655543333  99999999997543  1111110       223334


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++.+.+++++++.+...+..
T Consensus       146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            44555555      7888899999999998766543

>cd04158 ARD1 ARD1 subfamily

Probab=99.72  E-value=2.4e-16  Score=124.90  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|.+|+|||||++++.+... ..    ..+|......... ..+..+.+|||||.....           ......
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~~-----------~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVE-YKNLKFTIWDVGGKHKLR-----------PLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEE-ECCEEEEEEECCCChhcc-----------hHHHHH
Confidence            489999999999999999998643 11    2223322223223 567789999999965421           112223


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +.++|++++|+|++++-+-.+ ..++..+...... ...|++++.||.|+...  ...++....      ..+...+..+
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~--~~~~~~~~~------~~~~~~~~~~  134 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKEL-RDALLLIFANKQDVAGA--LSVEEMTEL------LSLHKLCCGR  134 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhh-CCCCEEEEEeCcCcccC--CCHHHHHHH------hCCccccCCC
Confidence            567799999999984322222 2223322221110 11389999999997644  233322111      0000111111


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ...|   ..+||+++.|+++++++|.+.+..+
T Consensus       135 ~~~~---~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         135 SWYI---QGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             cEEE---EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            1111   1368999999999999998776553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04123 Rab21 Rab21 subfamily

Probab=99.72  E-value=4.3e-16  Score=122.19  Aligned_cols=157  Identities=17%  Similarity=0.129  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||+|++++........  ...+......... ..+  ..+.+|||||...           +....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~   66 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE--STTQASFFQKTVN-IGGKRIDLAIWDTAGQER-----------YHALG   66 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CccceeEEEEEEE-ECCEEEEEEEEECCchHH-----------HHHhh
Confidence            379999999999999999999776522211  1111111111122 223  3688999999332           11112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|.+++-+... ..++..+......+  .|+++++||+|....  ..+..       ..+..+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~--~~~~~-------~~~~~~~~~~  135 (162)
T cd04123          67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQ--RVVSK-------SEAEEYAKSV  135 (162)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCH-------HHHHHHHHHc
Confidence            223467899999999984433333 23444555544332  399999999997643  11110       0122334444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +..++.      .|++++.+++++++++.+.
T Consensus       136 ~~~~~~------~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123         136 GAKHFE------TSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHH
Confidence            555554      7788889999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.72  E-value=3.5e-16  Score=123.54  Aligned_cols=156  Identities=17%  Similarity=0.091  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEE--Ee-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+++|++|||||||+++++.......    ...|........  .. .....+.+|||||......        +   
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~---   65 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------L---   65 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------c---
Confidence            3799999999999999999985543111    122222222211  11 1234778999999654321        1   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....+..+|++++|+|++++.+... ..++..+....+   ..|+++|.||+|+...  ....+         ...+...
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~  131 (166)
T cd00877          66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK  131 (166)
T ss_pred             cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence            1123567899999999985444333 345555655543   2399999999997533  11010         1122233


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +||+++.+++++++++.+.+.+
T Consensus       132 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         132 KNLQYYE------ISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             cCCEEEE------EeCCCCCChHHHHHHHHHHHHh
Confidence            3344555      7889999999999999877654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.71  E-value=3.5e-16  Score=123.23  Aligned_cols=159  Identities=21%  Similarity=0.179  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||+|++.+........    .|...........++  ..+.+|||||......        +   .
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~---~   65 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA--------M---R   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccC----CchhhhEEEEEEECCEEEEEEEEECCCcccchH--------H---H
Confidence            379999999999999999999866422111    111111111111333  4678999999665311        1   1


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|++++-+-.. ..+...+...... ...|++++.||+|....  ..+...       ....+....
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~  135 (164)
T smart00173       66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE-------EGKELARQW  135 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH-------HHHHHHHHc
Confidence            122456699999999984433333 2333444433221 12399999999997643  111110       022334444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.++++      +|++++.+++++++++.+.+.
T Consensus       136 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      136 GCPFLE------TSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             CCEEEE------eecCCCCCHHHHHHHHHHHHh
Confidence            555555      788889999999999876543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04144 Ras2 Ras2 subfamily

Probab=99.71  E-value=3.4e-16  Score=126.44  Aligned_cols=160  Identities=18%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+|+|.+|+|||||++++++.......    ..|...........++.  .+.+|||||....           .....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETY----DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-----------TALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchHhhEEEEEEECCEEEEEEEEECCCchhh-----------HHHHH
Confidence            4899999999999999999865532111    11211111111123444  4789999995432           11222


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .+++++|++++|+|++++-+... ..++..+...... ....|+++|.||+|+...  ..+....       ...+....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEE-------GAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHh
Confidence            34567799999999985443333 3455555544321 122399999999997543  1111100       12233444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      .||+++.++++++.++...+..
T Consensus       137 ~~~~~e------~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         137 GCEFIE------ASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence            555554      8888999999999999876543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=99.71  E-value=4.9e-16  Score=125.30  Aligned_cols=160  Identities=19%  Similarity=0.230  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++++.........+  .+.......+. .++  ..+.+|||||...           +....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~~-----------~~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKST--IGVDFKIKTVY-IENKIIKLQIWDTNGQER-----------FRSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHhhH
Confidence            36999999999999999999977652211111  11111112222 333  3568999999443           11122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+.++|++++|+|++++-+-.. ..++..+....+..  .|++++.||.|....  ..+....       ...+....
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~  135 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL  135 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence            334678899999999985433333 23444444443323  389999999997643  2111111       12233333


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +.+++.      +|++++.++++++.++...+..
T Consensus       136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         136 NIPFFE------TSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            445555      7888889999999998776543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.4e-16  Score=120.46  Aligned_cols=164  Identities=15%  Similarity=0.138  Sum_probs=113.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||.|+.++.+.....+-.++.++........+. .....+.||||.|-           +.+.....
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQ-----------ERFrtit~   76 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQ-----------ERFRTITS   76 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeecccc-----------HHHhhhhH
Confidence            3789999999999999999999888755555555444333322211 12337899999993           34445566


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+|+++|++|+|.|++.+-+-.. ..|+..+.......+  |.++|.||+|+.+.  ..+....       .+.+....+
T Consensus        77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~~~  145 (205)
T KOG0084|consen   77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADELG  145 (205)
T ss_pred             hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHhcC
Confidence            67999999999999995544444 456677776655555  99999999997655  2221111       134445555


Q ss_pred             Cc-eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          178 NR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       178 ~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+ ++.      +||+...++++.+..+...+...
T Consensus       146 ~~~f~E------TSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  146 IPIFLE------TSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             Ccceee------cccCCccCHHHHHHHHHHHHHHh
Confidence            54 443      88888899999999888776553

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.71  E-value=3.3e-16  Score=126.31  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      ..+|+++|+.++|||||+++|++......              .....+.|.......+. +++..+.++||||+.+   
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~---   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD---   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHH---
Confidence            37899999999999999999986411000              00123445554444443 5778899999999643   


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH-Hhcc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGH  163 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~-~~~~  163 (301)
                              +...+......+|++++|+|+..+....+...+..+... +.+   ++++++||+|....  ....+ ...+
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~--~~~~~~~~~~  143 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD--EELLELVEME  143 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc--HHHHHHHHHH
Confidence                    222223334567999999999877888887877777654 431   37899999998643  33333 2223


Q ss_pred             cCCchHHHHHHHcC
Q 022188          164 ECPKPLKEILQLCD  177 (301)
Q Consensus       164 ~~~~~l~~~~~~~~  177 (301)
                           +..++..++
T Consensus       144 -----i~~~l~~~g  152 (195)
T cd01884         144 -----VRELLSKYG  152 (195)
T ss_pred             -----HHHHHHHhc
Confidence                 566666554

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.71  E-value=6.7e-16  Score=147.61  Aligned_cols=162  Identities=21%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|+|....... ...+.|... ......+++..+.+|||||+....   ..+...+.....
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~-~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~  349 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDR-VSYDAEWAGTDFKLVDTGGWEADV---EGIDSAIASQAQ  349 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEE-EEEEEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence            468999999999999999999987642221 123444443 333334778899999999987422   123334444444


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  177 (301)
                      .++..+|++|+|+|++.+++..+..+...+... +    .|+++|+||+|....  ...           ...... .+ 
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~-lg~  410 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWK-LGL  410 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHH-cCC
Confidence            456678999999999877888887777777642 2    399999999997533  110           111111 12 


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+      ++||..+.|+.+|++++...++.
T Consensus       411 ~~~~------~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        411 GEPY------PISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCeE------EEECCCCCCchHHHHHHHHhccc
Confidence            1222      37999999999999999877643

>cd04136 Rap_like Rap-like subfamily

Probab=99.71  E-value=6.1e-16  Score=121.62  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++.+......-    .+|...........++  ..+.+|||||.....           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-----------AMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEECCEEEEEEEEECCCccccc-----------hHH
Confidence            68999999999999999999976542211    1122111111111344  356789999965421           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++++|++++|+|++++-+-.. ..++..+...... ...|++++.||+|....  ..+...  .     ...+....
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~--~-----~~~~~~~~  136 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSRE--E-----GQALARQW  136 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHH--H-----HHHHHHHc
Confidence            223567899999999984433333 3344445443221 12399999999997543  111110  0     12233444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +.+++.      +|++++.++.+++.++...
T Consensus       137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         137 GCPFYE------TSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             CCeEEE------ecCCCCCCHHHHHHHHHHh
Confidence            445555      7888999999999998654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00154 Rab Rab family

Probab=99.71  E-value=4.5e-16  Score=121.36  Aligned_cols=156  Identities=21%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .+|+++|++|+|||||+|++++...........+.+...  ..+.. .....+.+||+||...           +.....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~   67 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKS--KTIEIDGKTVKLQIWDTAGQER-----------FRSITP   67 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEE--EEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence            379999999999999999999877633311111111111  11111 1235788999999533           222223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .....+|++++|+|++++-+... ..++..+.......  .|+++++||+|..... ....+.        .+.+....+
T Consensus        68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~~~  136 (159)
T cd00154          68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKENG  136 (159)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHHcC
Confidence            34567899999999984322222 33444554443122  3999999999985221 111111        333444445


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ..++.      .|+..+.++.+++.++.
T Consensus       137 ~~~~~------~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         137 LLFFE------TSAKTGENVEELFQSLA  158 (159)
T ss_pred             CeEEE------EecCCCCCHHHHHHHHh
Confidence            55555      67777889999998874

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04127 Rab27A Rab27a subfamily

Probab=99.71  E-value=9.2e-16  Score=122.76  Aligned_cols=163  Identities=13%  Similarity=0.050  Sum_probs=96.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---------eCCeeEEEEeCCCCCCCCCCcHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------KDGQVVNVIDTPGLFDLSAGSEFV   89 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~liDtPG~~~~~~~~~~~   89 (301)
                      ..+|+++|++|+|||||++++.+......-....+............         .....+.+|||||..         
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------   74 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE---------   74 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence            37899999999999999999997664221111111111111111110         112467899999922         


Q ss_pred             HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~  168 (301)
                        .+.......+.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+...  ..+..       ..
T Consensus        75 --~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~v~~-------~~  142 (180)
T cd04127          75 --RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLEDQ--RQVSE-------EQ  142 (180)
T ss_pred             --HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchhc--CccCH-------HH
Confidence              233333445678899999999984433333 2344444433211 11289999999997643  11110       01


Q ss_pred             HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+....+.+++.      +|++++.+++++++.+...+
T Consensus       143 ~~~~~~~~~~~~~e------~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         143 AKALADKYGIPYFE------TSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHHHHHHcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            23344444555554      78889999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.71  E-value=6.6e-16  Score=121.62  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeeEe--EEEE--eeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEM--KTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      .+|+++|.+|+|||||++++.+.. .+...   ...|.....  ....  ......+.+|||||...           ..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~   66 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YS   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HH
Confidence            369999999999999999998542 22221   122221111  1111  12346789999999322           12


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .........+|++++|+|++++.+... ..++..+....   ...|+++|.||+|....  ..+....       ...+.
T Consensus        67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~  134 (164)
T cd04101          67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA  134 (164)
T ss_pred             HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence            222334567899999999984433222 34444444432   12399999999997543  1111110       11222


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ...+..++.      +|+.++.++.++++.+.+.
T Consensus       135 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~  162 (164)
T cd04101         135 QANQLKFFK------TSALRGVGYEEPFESLARA  162 (164)
T ss_pred             HHcCCeEEE------EeCCCCCChHHHHHHHHHH
Confidence            333434444      7888899999999988764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04117 Rab15 Rab15 subfamily

Probab=99.71  E-value=5.5e-16  Score=121.80  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +|+++|++|+|||||++.+++....+..    ..|...  ....+. .++  ..+.+|||||...           ....
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQER-----------YQTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHh-----------HHhh
Confidence            6999999999999999999876652221    222221  112222 333  3678999999433           1222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++-+-.. ..++..+.......  .|+++|.||.|+...  ..+....       ...+...
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~-------~~~~~~~  134 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ-------GNKLAKE  134 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH-------HHHHHHH
Confidence            2334678899999999985433333 33444444443222  399999999997543  1111100       1223333


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+..++.      +|++.+.++++++.+|.+.
T Consensus       135 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         135 YGMDFFE------TSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHhh
Confidence            4444444      8888899999999998653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK11058 GTPase HflX; Provisional

Probab=99.71  E-value=6.4e-16  Score=138.46  Aligned_cols=165  Identities=18%  Similarity=0.103  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|.+|||||||+|+|++...+.+.  ..+.|.......+...+...+.+|||||+... .+ ....+.+...+ .
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp-~~lve~f~~tl-~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRH-LP-HDLVAAFKATL-Q  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCccccc-CC-HHHHHHHHHHH-H
Confidence            57999999999999999999998764222  22334333333334334458899999998542 12 22233343332 3


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      ....+|++++|+|++++.+..... +..++.+....+  .|+++|+||+|+...  .  ...+..          ...+.
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~--~~~~~~----------~~~~~  336 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--F--EPRIDR----------DEENK  336 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--h--hHHHHH----------HhcCC
Confidence            457889999999998665444433 334444432212  399999999997633  1  111110          01121


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +.     ...+|++++.|+++|++++...+..
T Consensus       337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        337 PI-----RVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            21     1237899999999999999887753

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.71  E-value=1.9e-16  Score=129.61  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEeeCCeeE
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV   71 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (301)
                      +|+|+|++|+|||||+++|++..-....                             ....+.|.......+. +++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence            5899999999999999999864321110                             0012344444444333 678899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      .+|||||+.++       ...+.    .+...+|++++|+|++.+........+..+.. .+..   ++++++||+|...
T Consensus        80 ~liDTpG~~~~-------~~~~~----~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQY-------TRNMV----TGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHH-------HHHHH----HhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence            99999995431       11222    23457799999999986666665555454433 3422   5788999999864


Q ss_pred             CccccHHHHhcccCCchHHHHHHHcCCc---eEEecCCCcccccchhHHHH
Q 022188          152 DHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  199 (301)
                      .....+......     ++.++...+..   +++      +|+..+.++.+
T Consensus       145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~~ii~------iSA~~g~ni~~  184 (208)
T cd04166         145 YSEEVFEEIVAD-----YLAFAAKLGIEDITFIP------ISALDGDNVVS  184 (208)
T ss_pred             CCHHHHHHHHHH-----HHHHHHHcCCCCceEEE------EeCCCCCCCcc
Confidence            311223333333     55555555532   344      67777766664

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.71  E-value=1.6e-16  Score=136.60  Aligned_cols=164  Identities=22%  Similarity=0.178  Sum_probs=110.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +..+.|+++|.||||||||+|+|++..++....-  ..|-..........++..+.+.||.||.+- .|     ..++.+
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L--FATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP-----~~LV~A  261 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQL--FATLDPTTRRIELGDGRKVLLTDTVGFIRD-LP-----HPLVEA  261 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccc--cccccCceeEEEeCCCceEEEecCccCccc-CC-----hHHHHH
Confidence            4557899999999999999999999887644422  223222222334456889999999999873 22     344554


Q ss_pred             Hhcc---CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           97 LGMA---KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        97 ~~~~---~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      +.++   ...+|++++|+|++++..... ......|.++-..+  .|+++++||+|....  ......           +
T Consensus       262 FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~-----------~  326 (411)
T COG2262         262 FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAE-----------L  326 (411)
T ss_pred             HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhh-----------h
Confidence            4443   467899999999996643333 44555666652222  499999999998755  221111           1


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      -....       +....||+++.|++.|.+.|...++.
T Consensus       327 ~~~~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         327 ERGSP-------NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             hhcCC-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            11111       23347999999999999999988874

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.71  E-value=8.4e-16  Score=120.74  Aligned_cols=155  Identities=21%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +|+++|.+|+|||||++++++.......  ...............   .....+.+|||||...           +....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence            6999999999999999999976542211  111111111111221   1234789999999332           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++++|++++|++++++-+... ..++..+..... .  .|+++++||+|.........++         ...+....
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~~  136 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALAKRL  136 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence            334678899999999984433333 234444443332 2  3999999999976431111111         23344445


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +.+++.      .|++++.+++++++++..
T Consensus       137 ~~~~~~------~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         137 QLPLFR------TSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             CCeEEE------EECCCCCCHHHHHHHHHH
Confidence            555555      778888999999998864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.71  E-value=2.7e-16  Score=130.74  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc--cC--------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKA--SA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~--~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +|+++|+.|+|||||+++|+.......  +.              ...+.|.......+. +++..+.+|||||..++. 
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~-   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFI-   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchH-
Confidence            489999999999999999985421100  00              011223333333333 788899999999987632 


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~  164 (301)
                            .+...++    ..+|++++|+|+..+.......+++.+... +.    |+++++||+|....   ...+.    
T Consensus        79 ------~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a---~~~~~----  136 (237)
T cd04168          79 ------AEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA---DLEKV----  136 (237)
T ss_pred             ------HHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC---CHHHH----
Confidence                  2333333    455999999999977777667777766543 33    89999999997654   22333    


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKRE  244 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
                          +..+...++.+.+++..+.....                .       +      ...+.  ..+.++.+.+.+++.
T Consensus       137 ----~~~i~~~~~~~~~~~~~p~~~~~----------------~-------~------~~~~~--~~~l~e~vae~dd~l  181 (237)
T cd04168         137 ----YQEIKEKLSSDIVPMQKVGLAPN----------------I-------C------ETNEI--DDEFWETLAEGDDEL  181 (237)
T ss_pred             ----HHHHHHHHCCCeEEEECCcEeee----------------e-------e------eeeec--cHHHHHHHhcCCHHH
Confidence                44555666777777664321100                0       0      00011  134466677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 022188          245 ISKLMGQMQESYEDRIKRMAEM  266 (301)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~  266 (301)
                      ++++.++.+...++..+.+++.
T Consensus       182 ~e~yl~~~~~~~~el~~~l~~~  203 (237)
T cd04168         182 LEKYLEGGPIEELELDNELSAR  203 (237)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHH
Confidence            8888876655555555555444

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04175 Rap1 Rap1 subgroup

Probab=99.70  E-value=7.9e-16  Score=121.22  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||+++++.... ...   ..+|...........++  ..+.+|||||.....           ...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF-VEK---YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----------AMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC-Ccc---cCCcchheEEEEEEECCEEEEEEEEECCCcccch-----------hHH
Confidence            5799999999999999999985433 111   11222211111122343  356799999965421           112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+.++|++++|+|.+++-+... ..++..+..... ....|++++.||+|+.........+         ...+....
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQW  136 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHH---------HHHHHHHh
Confidence            223567799999999874433333 334444443221 1123999999999976431011111         22333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +||+++.++++++.++...+
T Consensus       137 ~~~~~~------~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         137 GCAFLE------TSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             CCEEEE------eeCCCCCCHHHHHHHHHHHh
Confidence            555555      78889999999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.70  E-value=6.6e-16  Score=123.95  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=92.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|++|+|||||++++++...... ....+.+............+..+.+|||||...           +.....
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~~   70 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLWK   70 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHHHH
Confidence            36899999999999999999987654221 111111111111111112456889999999432           112223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+..+|++++|+|++++-+... ..++..+..... ....|+++++||+|....  ...++. ..     +..+.....
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~~-~~-----~~~~~~~~~  141 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSEV-EK-----LLALHELSA  141 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHHH-HH-----HhCccccCC
Confidence            34567899999999984322222 223333332211 122499999999997543  222221 11     000000001


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+.   ..++||+++.|+++++.+|.+.+.
T Consensus       142 ~~~~~---~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         142 STPWH---VQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             CCceE---EEEeecccCCCHHHHHHHHHHHHH
Confidence            11011   113788999999999999876653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01863 Rab18 Rab18 subfamily

Probab=99.70  E-value=9.9e-16  Score=120.24  Aligned_cols=158  Identities=19%  Similarity=0.113  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|++|+|||||+|++++...........+.+......... .....+.+|||||....           ......
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~-----------~~~~~~   68 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERF-----------RTLTSS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhh-----------hhhhHH
Confidence            379999999999999999999876522222111212111111111 12346899999995431           111222


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .++.+|++++|+|++++-+... ..++..+..... ....|++++.||+|..... ...++         ...+....+.
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~~  137 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHNM  137 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcCC
Confidence            3567899999999984433333 234444544432 2223899999999976331 11111         2233333444


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .++.      .|+..+.++.++++.+..
T Consensus       138 ~~~~------~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         138 LFIE------TSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             EEEE------EecCCCCCHHHHHHHHHH
Confidence            5555      778888999999988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04157 Arl6 Arl6 subfamily

Probab=99.70  E-value=3.9e-16  Score=122.57  Aligned_cols=158  Identities=13%  Similarity=0.039  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|.+|+|||||++++++...+.....   +|.......+. ..+..+.+|||||....           ......+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFE-KGNLSFTAFDMSGQGKY-----------RGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEE-ECCEEEEEEECCCCHhh-----------HHHHHHH
Confidence            489999999999999999998653222211   12211122222 56778999999995542           1222334


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +.++|++++|+|++++.+... ...+..+..... .....|+++++||+|....  ....+.... ..  +.    ....
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-l~--~~----~~~~  136 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-LG--LE----NIKD  136 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-hC--Cc----cccC
Confidence            577899999999985443222 223333322110 0112399999999997644  222211111 00  00    0011


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ....   ...+||+++.|+++++++|.
T Consensus       137 ~~~~---~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         137 KPWH---IFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             ceEE---EEEeeCCCCCchHHHHHHHh
Confidence            1111   12378899999999999975

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.70  E-value=8.8e-16  Score=124.42  Aligned_cols=117  Identities=16%  Similarity=0.269  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC-CCccccC-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      .++|+++|++|+|||||++++++. ..+....             ...+.+.......+. +++..+.+|||||..++  
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~~--   78 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHADF--   78 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHHH--
Confidence            478999999999999999999863 1221110             012223333333333 56788999999996542  


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                               ......++..+|++++|+|++++.......++..+...   ..  |+++++||+|+...
T Consensus        79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~---~~--p~iiv~NK~Dl~~~  132 (194)
T cd01891          79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL---GL--KPIVVINKIDRPDA  132 (194)
T ss_pred             ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc---CC--CEEEEEECCCCCCC
Confidence                     22222345677999999999855444444444443321   22  89999999997643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.70  E-value=2.3e-16  Score=123.42  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|++|+|||||+|+|.|.....      ..+...     . +...  .+|||||++...   ......+.    .
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v-----~-~~~~--~~iDtpG~~~~~---~~~~~~~~----~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV-----E-FNDK--GDIDTPGEYFSH---PRWYHALI----T   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEE-----E-ECCC--CcccCCccccCC---HHHHHHHH----H
Confidence            379999999999999999999865311      111111     1 2222  279999986532   12222222    2


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (301)
                      .+.++|++++|+|++...+....    .+... +.  ..|+++++||+|....   ..+.         +...+...+. 
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~  121 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE  121 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence            35677999999999844332222    12222 11  1289999999997432   1211         2233333342 


Q ss_pred             -ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       +++.      +|++++.++++|++.+.+.+..
T Consensus       122 ~p~~~------~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        122 EPIFE------LNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCEEE------EECCCccCHHHHHHHHHHhchh
Confidence             5555      7888999999999999887643

>cd01893 Miro1 Miro1 subfamily

Probab=99.70  E-value=1.2e-15  Score=120.45  Aligned_cols=154  Identities=17%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      +|+|+|.+|+|||||+|++.+...... ..   .+......... ......+.+|||||.....       ...    ..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP---RVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc-CC---CcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence            699999999999999999997664222 11   11111111111 1234578899999965421       111    12


Q ss_pred             cCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc---HHHHhcccCCchHHHHHH
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT---LEDFLGHECPKPLKEILQ  174 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~---~~~~~~~~~~~~l~~~~~  174 (301)
                      .+..+|++++|+|++++.+-..  ..++..++.... .  .|++++.||+|+...  ..   .++.        +..+..
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~--------~~~~~~  133 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEE--------MLPIMN  133 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHH--------HHHHHH
Confidence            2467799999999985444443  235555655432 2  399999999998654  21   1111        112222


Q ss_pred             HcC--CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...  ..++      .+|++++.++++++..+...+
T Consensus       134 ~~~~~~~~~------e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         134 EFREIETCV------ECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             HHhcccEEE------EeccccccCHHHHHHHHHHHh
Confidence            221  1333      378889999999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.70  E-value=2.4e-16  Score=123.64  Aligned_cols=157  Identities=17%  Similarity=0.070  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|++|+|||||++++++.......     +|...............+.+|||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            4899999999999999999987753221     1221112222223456899999999543           11222233


Q ss_pred             CCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +..+|++++|+|++++.+-..  ..+...+.....  ...|+++++||+|....  ...++.... ..  +..+....+.
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~  137 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSDRDW  137 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCCCcE
Confidence            567799999999984432222  222222222111  12399999999997543  222221111 00  0001100011


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .++      ++||+++.|+++++++|.+
T Consensus       138 ~~~------~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         138 YVQ------PCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             EEE------ecccccCCChHHHHHHHhc
Confidence            122      3789999999999998853

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01862 Rab7 Rab7 subfamily

Probab=99.69  E-value=1.7e-15  Score=120.10  Aligned_cols=162  Identities=17%  Similarity=0.099  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||+|++++.........  ............ ..+.  .+.+|||||....           ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~-----------~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVT-VDDKLVTLQIWDTAGQERF-----------QSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCC--ccceEEEEEEEE-ECCEEEEEEEEeCCChHHH-----------HhHH
Confidence            3799999999999999999998764222111  111111111122 3333  4679999995331           1122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ...+.++|++++++|++++.+.... .+...+...+..  ....|+++++||+|.........++         ...+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ  137 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence            2345678999999999844332222 233333332221  1123999999999986321011111         223344


Q ss_pred             HcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+ ..++.      .|++++.|++++++++...+.+
T Consensus       138 ~~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         138 SNGNIPYFE------TSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             HcCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence            444 34554      7888899999999998876544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=99.69  E-value=2e-15  Score=123.96  Aligned_cols=162  Identities=15%  Similarity=0.116  Sum_probs=95.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||++++++... . ... ...........+. .++  ..+.+|||||...+.           .
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~-~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~-----------~   77 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSV-E-DLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQERFR-----------T   77 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC-C-CcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchhhH-----------H
Confidence            458999999999999999999998664 1 111 1111111112222 333  467999999965421           1


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHHH--HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ....+++.+|++++|+|++++-+.....  +...+.. +......|+++|.||+|+...  ..+....       ...+.
T Consensus        78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~~-------~~~~~  147 (211)
T PLN03118         78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSREE-------GMALA  147 (211)
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHHH-------HHHHH
Confidence            1222356779999999998543333321  2222322 221122389999999997643  1111000       12223


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +|++.+.+++++++++...+..
T Consensus       148 ~~~~~~~~e------~SAk~~~~v~~l~~~l~~~~~~  178 (211)
T PLN03118        148 KEHGCLFLE------CSAKTRENVEQCFEELALKIME  178 (211)
T ss_pred             HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            333444444      7888899999999999877654

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.69  E-value=1.6e-15  Score=122.23  Aligned_cols=162  Identities=16%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-C--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++|+|+|++|+|||||++++.+......    ...|............ +  ..+.+|||||...           +...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence            3799999999999999999997764221    1223222222111122 2  3678999999433           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+.++|++++|+|++++.+-...  .++..+... ..+  .|++++.||.|+...  ......+.   ......+..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~  137 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK  137 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence            23346788999999999854444332  234444332 222  399999999997543  11000000   011233444


Q ss_pred             HcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+. .++.      +|++++.++.+++..+...+..
T Consensus       138 ~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         138 KQGAFAYLE------CSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             HcCCcEEEE------ccCCCCCCHHHHHHHHHHHHHh
Confidence            4444 4444      7888999999999998876543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=99.69  E-value=1.4e-15  Score=120.44  Aligned_cols=158  Identities=16%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|++|+|||||++++++....+...  ...+.......+. +.+  ..+.+|||||....           ...
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~-----------~~~   72 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVE-IKGEKIKLQIWDTAGQERF-----------RSI   72 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcHHH-----------HHH
Confidence            3789999999999999999998655422211  1111112222222 444  35788999995331           111


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+... ..++..+........  |++++.||+|....  ..+....       .+.+...
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~  141 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER--REVSQQR-------AEEFSDA  141 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence            1223567799999999984333222 234444554433333  89999999997644  2211111       1122222


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ....++.      +|+.++.++.++++.+...
T Consensus       142 ~~~~~~~------~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         142 QDMYYLE------TSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             cCCeEEE------eeCCCCCCHHHHHHHHHHH
Confidence            2334444      7888899999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=99.69  E-value=1.8e-15  Score=121.19  Aligned_cols=161  Identities=15%  Similarity=0.125  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .+|+++|..|+|||||++++++..... .   ..+|.....  ..+. .++  ..+.+|||+|...           +..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~---~~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~~-----------~~~   64 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-D---YIQTLGVNFMEKTIS-IRGTEITFSIWDLGGQRE-----------FIN   64 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-C---CCCccceEEEEEEEE-ECCEEEEEEEEeCCCchh-----------HHH
Confidence            369999999999999999998765421 1   122222111  1222 344  4679999999443           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc-ccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~  173 (301)
                      ....+++++|++++|+|++++.+-.+ ..++..+.......  .| ++|.||+|+..... ...+.....     ...+.
T Consensus        65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a  136 (182)
T cd04128          65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA  136 (182)
T ss_pred             hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence            33345788899999999985544444 24555554432222  25 67899999753200 011111111     23344


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +||+++.++++++.++...+..
T Consensus       137 ~~~~~~~~e------~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         137 KAMKAPLIF------CSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            444545554      7889999999999998876543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.69  E-value=8.3e-16  Score=122.39  Aligned_cols=157  Identities=13%  Similarity=0.040  Sum_probs=90.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|++|+|||||++++++......     .+|......... .++..+.+|||||...           +.....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIV-YKNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCeEEEEEECCCCHH-----------HHHHHH
Confidence            47899999999999999999987654221     122222222223 5677899999999643           112222


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .++.++|++++|+|++++-+... ...+..+....+ ....|+++++||+|....  ...++.... ..  +.. .....
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-l~--~~~-~~~~~  150 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-LG--LTS-IRDHT  150 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-hC--ccc-ccCCc
Confidence            34567899999999984322211 222222221111 012399999999997643  222221111 00  000 00011


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      .+++      ++||+++.|+++++++|.
T Consensus       151 ~~~~------~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         151 WHIQ------GCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             eEEE------ecccCCCCCHHHHHHHHh
Confidence            1222      378889999999999985

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04149 Arf6 Arf6 subfamily

Probab=99.69  E-value=5.5e-16  Score=122.67  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|++|+|||||++++....... .    .+|+........ .....+.+|||||...           +.....
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~----~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~   71 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT-T----IPTVGFNVETVT-YKNVKFNVWDVGGQDK-----------IRPLWR   71 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc-c----cCCcccceEEEE-ECCEEEEEEECCCCHH-----------HHHHHH
Confidence            4789999999999999999998654321 1    112222222222 4567899999999543           222223


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH--
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ--  174 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--  174 (301)
                      .++.++|++++|+|++++.+-.+  ....+.+.+...  ...|++++.||+|+...  ...++...         .+.  
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~~  138 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQE---------KLGLT  138 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHH---------HcCCC
Confidence            35678899999999985432222  122222222111  12399999999997543  22221111         110  


Q ss_pred             HcC-CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ... ..+.    ..++||+++.|+.+++.+|.
T Consensus       139 ~~~~~~~~----~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         139 RIRDRNWY----VQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             ccCCCcEE----EEEeeCCCCCChHHHHHHHh
Confidence            001 1111    11379999999999999885

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.69  E-value=1.2e-15  Score=121.52  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=92.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|.+|+|||||++++..... ..    ..+|......... ..+..+.+|||||...           +.....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~   75 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES-VT----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLWR   75 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence            48899999999999999999964332 11    1123222222223 4567899999999544           222233


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .++.++|++++|+|++++-+-.+ ...+..+ .......  .|++|+.||.|+...  ...++....     +.  +...
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~  144 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRD--AVILVFANKQDLPDA--MKAAEITEK-----LG--LHSI  144 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcC--CcEEEEEeCcCcccC--CCHHHHHHH-----hC--cccc
Confidence            34678899999999984432222 2233322 2211112  389999999997544  222221111     00  0001


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+.   ..++||+++.|+.+++++|...+
T Consensus       145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence            111111   11378899999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04176 Rap2 Rap2 subgroup

Probab=99.69  E-value=1.2e-15  Score=120.10  Aligned_cols=156  Identities=19%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+++|.+|+|||||++++.+........    .|.. ....... .++.  .+.+|||||...+..        +   
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~--------~---   65 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFAS--------M---   65 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEEE-ECCEEEEEEEEECCCcccccc--------h---
Confidence            689999999999999999998765532221    1211 1111122 3343  567899999654321        1   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++.++|++++|+|.+++-+-.+ ..++..+..... ....|++++.||+|+...  ..+....       ...+...
T Consensus        66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~  135 (163)
T cd04176          66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE  135 (163)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence            1123567799999999985433333 344455554422 122399999999997543  1111100       1222333


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+..+++      +|++++.++.+++.++.+.
T Consensus       136 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         136 WGCPFME------TSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             hCCEEEE------ecCCCCCCHHHHHHHHHHh
Confidence            3444444      7888899999999988653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PTZ00369 Ras-like protein; Provisional

Probab=99.69  E-value=1.9e-15  Score=121.95  Aligned_cols=161  Identities=20%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++.+........    +|...........++  ..+.+|||||..++.           ..
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l   69 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-----------AM   69 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence            4899999999999999999999765422211    111111111111233  357789999976532           11


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...+++++|++++|+|++++-+-.. ..++..+...... ...|++++.||+|....  ..+....       ...+...
T Consensus        70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~  139 (189)
T PTZ00369         70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS  139 (189)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence            2224567799999999985443333 3344444443221 12389999999997533  1111100       1223333


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+.+++.      +||+++.|+.+++.++...+..
T Consensus       140 ~~~~~~e------~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        140 FGIPFLE------TSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             hCCEEEE------eeCCCCCCHHHHHHHHHHHHHH
Confidence            4445554      7888999999999999766543

>cd04118 Rab24 Rab24 subfamily

Probab=99.69  E-value=1.1e-15  Score=123.72  Aligned_cols=162  Identities=17%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|.+|+|||||++++++.......   ...|...... .....++.  .+.+|||||....           ...
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~   66 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-----------EAM   66 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEEECCEEEEEEEEECCCchhh-----------hhh
Confidence            37999999999999999999976642211   1222221111 11123443  4569999995432           111


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....+.++|++++|+|++++-+-.. ..++..+..... .  .|+++|.||+|+...  ......+.   ......+...
T Consensus        67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~  138 (193)
T cd04118          67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-H--CKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADE  138 (193)
T ss_pred             hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-C--CCEEEEEEccccccc--ccccCccC---HHHHHHHHHH
Confidence            1223567899999999984433222 345555544321 2  399999999997543  10000000   0012333344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      .|++++.++++|++++.+.+.
T Consensus       139 ~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~  166 (193)
T cd04118         139 IKAQHFE------TSSKTGQNVDELFQKVAEDFV  166 (193)
T ss_pred             cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            4444554      788889999999999986653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.69  E-value=4.4e-16  Score=125.06  Aligned_cols=163  Identities=7%  Similarity=-0.049  Sum_probs=92.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+++|.+|+|||||+|++.+......     .+|......... .++..+.++||||...           .....
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~-----------~~~~~   78 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELA-IGNIKFTTFDLGGHQQ-----------ARRLW   78 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence            348899999999999999999998654211     112211222222 5677899999999543           11222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-  175 (301)
                      ..++.++|++++|+|++++-+-.. ...+..+.+... ....|++++.||+|....  ...++.... ..  +...... 
T Consensus        79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-l~--l~~~~~~~  152 (184)
T smart00178       79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYA--ASEDELRYA-LG--LTNTTGSK  152 (184)
T ss_pred             HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--CCHHHHHHH-cC--CCcccccc
Confidence            345678899999999984311111 122222221100 012399999999997543  222222211 10  0000000 


Q ss_pred             --cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 --CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                        .+.+.   .....+|+.++.|+++++++|..
T Consensus       153 ~~~~~~~---~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      153 GKVGVRP---LEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccCCce---eEEEEeecccCCChHHHHHHHHh
Confidence              01111   11234788899999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.68  E-value=1.6e-15  Score=120.29  Aligned_cols=160  Identities=16%  Similarity=0.113  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++........  ...........+. .++  ..+.+|||||....       ..   ...
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-------~~---~~~   69 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVE-IDGERIKVQLWDTAGQERF-------RK---SMV   69 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEE-ECCeEEEEEEEeCCChHHH-------HH---hhH
Confidence            689999999999999999998765421111  1111111111222 334  47899999994331       11   122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++.+|++++|+|++++-+.... .++..+..... ....|++++.||+|+...  ..+....       ...+....
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~~-------~~~~~~~~  139 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ--IQVPTDL-------AQRFADAH  139 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh--cCCCHHH-------HHHHHHHc
Confidence            3346788999999999855444443 34444444321 122399999999997543  1111100       12233333


Q ss_pred             CCceEEecCCCcccccc---hhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~---~~~~~~L~~~l~~~~  208 (301)
                      ...++.      +|+++   +.++.+++..+...+
T Consensus       140 ~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         140 SMPLFE------TSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence            444555      56665   677888887776543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.68  E-value=6.3e-16  Score=121.20  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|.+|+|||||++++...... ..    .+|......... .....+.+|||||...           +......+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~~----~pt~g~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-cc----CCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            6999999999999999999654431 21    112222222222 4567899999999543           22223345


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +.++|++++|+|++++.+-.+ ...+..+ .....  ...|++++.||.|+...  ....+....     +.  +.....
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~~~  133 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNA--MSAAEVTDK-----LG--LHSLRN  133 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence            678899999999984322222 2222222 21111  12399999999997543  222221111     00  000011


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      +...   ..++||+++.|+++++++|.
T Consensus       134 ~~~~---~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         134 RNWY---IQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence            1111   12378999999999999874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.68  E-value=3.8e-16  Score=128.65  Aligned_cols=194  Identities=18%  Similarity=0.191  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH-HHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKEIVKCL   97 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~~   97 (301)
                      ..+|+|+|.||+|||||.|.+.|..++  ..+....|++.+...+...+...+.++||||+......... ....+....
T Consensus        72 ~L~vavIG~PNvGKStLtN~mig~kv~--~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   72 SLYVAVIGAPNVGKSTLTNQMIGQKVS--AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             EEEEEEEcCCCcchhhhhhHhhCCccc--cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            479999999999999999999999994  44556677777777666677889999999999875543221 112222233


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH---HHHhccc-CCchHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHE-CPKPLKEIL  173 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~-~~~~l~~~~  173 (301)
                      +.+...+|++++|+|+++.-.....+.+..+......    |.+++.||+|..... ..+   .+.+.+. ......++.
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----Cceeeccchhcchhh-hHHhhhHHhccccccchhhhhHH
Confidence            3455678999999999853344445667777766443    899999999976541 011   1111110 000001111


Q ss_pred             HHcCC-c----------eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188          174 QLCDN-R----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL  220 (301)
Q Consensus       174 ~~~~~-~----------~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~  220 (301)
                      +++.. +          +-.|......|+..|.|+++|.+++....+. +...|+.++
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i  281 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADI  281 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCccc
Confidence            11110 0          1011222237889999999999999887765 223355444

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.68  E-value=9.2e-16  Score=120.06  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|++|+|||||++++++... ...    ..|......... ..+..+.+|||||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence            489999999999999999998863 211    122222222223 45778999999996542           1112223


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  178 (301)
                      +..+|++++|+|++.+-+... ...+..+..... ....|++++.||+|....  ...++....     +... ......
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~  135 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEKILGRRW  135 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhhccCCcE
Confidence            466799999999984322221 222222222111 112399999999998754  322222111     1000 000011


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +++.      .|++++.|+++++++|..
T Consensus       136 ~~~~------~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         136 HIQP------CSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EEEE------eeCCCCCCHHHHHHHHhh
Confidence            2333      688889999999988753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.68  E-value=1.5e-15  Score=121.79  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=92.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+++|++|+|||||++++........     .+|......... ..+..+.+|||||...           +....
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~   78 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVE-YKNLKFTMWDVGGQDK-----------LRPLW   78 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEE-ECCEEEEEEECCCCHh-----------HHHHH
Confidence            347899999999999999999965433111     122222222222 4667899999999533           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ..++.++|++|+|+|++++-+-.+  ....+.+.+...  ...|++++.||.|+.+.  ...++....     +.  +..
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~  147 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS  147 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence            334678899999999984322222  112222222211  12389999999997543  222221111     00  011


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..+.+.   ...+||+++.|+++++++|.+.+.
T Consensus       148 ~~~~~~~---~~~~Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        148 VRQRNWY---IQGCCATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             ccCCcEE---EEeeeCCCCCCHHHHHHHHHHHHH
Confidence            1111111   113688899999999999987654

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.68  E-value=1.1e-14  Score=120.33  Aligned_cols=167  Identities=11%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+++|..|+|||||++++++.... ..   ..+|...........++  ..+.||||||-..           +..
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~---y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~   76 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP-ET---YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN   76 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCC-CC---cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence            3478999999999999999999876542 21   12222211111111333  4679999999433           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc---ccC-CchH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPL  169 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~---~~~-~~~l  169 (301)
                      ....++.++|++++|+|++++-+-..  ..|+..+....+ ..  |+++|.||+|+.... ..+.+...   ... ....
T Consensus        77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e~  152 (232)
T cd04174          77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRTDL-STLMELSNQKQAPISYEQG  152 (232)
T ss_pred             HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccccc-chhhhhccccCCcCCHHHH
Confidence            23345789999999999996555443  356666665543 23  899999999974321 01100000   000 0113


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchh-HHHHHHHHHHHHHh
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV  209 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~  209 (301)
                      ..+....+. .++.      +||+++. ++++++..+.....
T Consensus       153 ~~~a~~~~~~~~~E------tSAktg~~~V~e~F~~~~~~~~  188 (232)
T cd04174         153 CALAKQLGAEVYLE------CSAFTSEKSIHSIFRSASLLCL  188 (232)
T ss_pred             HHHHHHcCCCEEEE------ccCCcCCcCHHHHHHHHHHHHH
Confidence            455555565 3554      8999886 79999999876653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04134 Rho3 Rho3 subfamily

Probab=99.68  E-value=2.5e-15  Score=121.29  Aligned_cols=165  Identities=18%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ++|+|+|.+|+|||||++++++.......    .+|...........++  ..+.+|||||....           ....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-----------DRLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChhc-----------cccc
Confidence            47999999999999999999976642211    1222111111111233  46899999995432           1112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l~  170 (301)
                      ..++..+|++++|++++++-+-..  ..++..+..... .  .|+++|.||+|+...  ....+.+...    .. ....
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL  140 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence            234678899999999985443333  235666655432 2  399999999997654  2222111100    00 0012


Q ss_pred             HHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+....+ ..++.      +||+++.++++++.++...+..
T Consensus       141 ~~~~~~~~~~~~e------~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         141 AVAKRINALRYLE------CSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHHHHcCCCEEEE------ccCCcCCCHHHHHHHHHHHHhc
Confidence            2233333 23444      8899999999999999877643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.68  E-value=2.7e-15  Score=123.07  Aligned_cols=162  Identities=15%  Similarity=0.129  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++.......  ............+...++  ..+.+|||||...           +....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   69 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT   69 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence            68999999999999999999986642221  111111211112221123  4688999999432           11222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++-+-.. ..++..+.+.... ...|+++|.||.|+...  ..+..       .....+....
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~~  139 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKDL  139 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHHh
Confidence            234677899999999985433333 3344444443322 12268899999997643  11110       0122344445


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      +|++++.++.+++++|...+..
T Consensus       140 ~~~~~e------~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         140 GMKYIE------TSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            545554      7888899999999999876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.68  E-value=2.9e-15  Score=118.74  Aligned_cols=159  Identities=18%  Similarity=0.074  Sum_probs=93.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+++|++|+|||||++++++....+....  ..+.......+. .++  ..+.+|||||...           +..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~   69 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLE-VDGHFVTLQIWDTAGQER-----------FRS   69 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEE-ECCeEEEEEEEeCCChHH-----------HHH
Confidence            458999999999999999999997664222111  111111111222 333  3568899999322           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      .....++.+|++++|++++++-+... ..+...+......  ....|++++.||+|+.... ....+         +..+
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~  139 (170)
T cd04116          70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTEE---------AQAW  139 (170)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHHH---------HHHH
Confidence            23334678899999999984433332 2333333332211  1123999999999975320 11111         3334


Q ss_pred             HHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ....+. .++.      .|++++.++.+++..+.+
T Consensus       140 ~~~~~~~~~~e------~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         140 CRENGDYPYFE------TSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHCCCCeEEE------EECCCCCCHHHHHHHHHh
Confidence            444442 3443      788889999999988754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04151 Arl1 Arl1 subfamily

Probab=99.68  E-value=6.1e-16  Score=121.12  Aligned_cols=155  Identities=14%  Similarity=0.021  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+|+|++|+|||||++++........     .+|......... ..+..+.+|||||....           ......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGQTSI-----------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEE-ECCEEEEEEECCCCHHH-----------HHHHHHH
Confidence            489999999999999999976554221     112222222222 45678999999996541           1222234


Q ss_pred             CCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +.++|++++|+|++++.+..  ...+...+.....  ...|+++++||+|..+.  ....+.... ..  .. .....+.
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~~~  135 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-LG--LS-ELKDRTW  135 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-hC--cc-ccCCCcE
Confidence            56789999999998432222  1222223322111  12399999999997644  222221111 00  00 0000011


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +++      ++|++++.+++++++++.+
T Consensus       136 ~~~------~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         136 SIF------KTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EEE------EeeccCCCCHHHHHHHHhc
Confidence            233      4788999999999998753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04155 Arl3 Arl3 subfamily

Probab=99.68  E-value=8.6e-16  Score=122.10  Aligned_cols=157  Identities=18%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+|+|++|+|||||+++|.+.......     .|......... ..+..+.+|||||...           +...+
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~-----~t~g~~~~~i~-~~~~~~~~~D~~G~~~-----------~~~~~   75 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHIT-----PTQGFNIKTVQ-SDGFKLNVWDIGGQRA-----------IRPYW   75 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccC-----CCCCcceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence            3589999999999999999999987542111     11111112222 4578899999999532           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHH-HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...+..+|++++|+|+++.-+... ...+. .+.....  ...|+++++||+|....  ....+....     +. + ..
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~~  144 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLATA--APAEEIAEA-----LN-L-HD  144 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-cc
Confidence            334567799999999983221111 22222 2222111  12399999999997654  333332221     00 0 00


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ...+...+   ...|++++.|+++++++|.
T Consensus       145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         145 LRDRTWHI---QACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             cCCCeEEE---EEeECCCCCCHHHHHHHHh
Confidence            11111111   2478899999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00880 Era_like Era (E

Probab=99.68  E-value=4.2e-15  Score=115.82  Aligned_cols=162  Identities=23%  Similarity=0.200  Sum_probs=96.2

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (301)
Q Consensus        24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
                      |+|++|+|||||+|+|++....... ...+.+...............+.+|||||+.+..............    ....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~----~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR----VLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH----HHHh
Confidence            5899999999999999987764322 1223333333333332236789999999998865443322122222    2456


Q ss_pred             ccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEe
Q 022188          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (301)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (301)
                      +|++++|+++..........+...... .  .  .|+++++||+|....  .........    ...........+++. 
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~--~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~-  143 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-R--G--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA-  143 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-c--C--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence            699999999995555555442222221 1  2  299999999998765  333332210    000011111233444 


Q ss_pred             cCCCcccccchhHHHHHHHHHHHH
Q 022188          184 DNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                           .++.++.++.++++++...
T Consensus       144 -----~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         144 -----VSALTGEGIDELREALIEA  162 (163)
T ss_pred             -----EeeeccCCHHHHHHHHHhh
Confidence                 5667778999999988653

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=2.4e-15  Score=139.48  Aligned_cols=160  Identities=17%  Similarity=0.209  Sum_probs=102.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+++|++|+|||||+++|.+..+....  ..+.|.....+.+.+.++..+++|||||..++.           ...
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~r  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SMR  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hHH
Confidence            4478999999999999999999987653222  234555555544442234489999999976532           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ...+..+|++++|++++++........+..+.. .+  .  |+++++||+|........+...+..     ..-....++
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~--v--PiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~  222 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN--V--PIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG  222 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC--C--CEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence            223567799999999987776666666655443 23  2  9999999999754311222222221     110111122


Q ss_pred             C--ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          178 N--RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       178 ~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .  +++      +.||+++.|+++|++++..
T Consensus       223 ~~~~~v------~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       223 GDTIFV------PVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CCceEE------EEECCCCCChHHHHHhhhh
Confidence            1  233      3899999999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.67  E-value=3.3e-15  Score=119.60  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=93.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+++|..|+|||||++++...... ..    .+|.......+. ..+..+.+|||||...           +....
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~----~pt~g~~~~~~~-~~~~~~~i~D~~Gq~~-----------~~~~~   78 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLW   78 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cc----cCCcceeEEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence            3479999999999999999999854432 11    122222222222 4677899999999422           22223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ..++.++|++++|+|++++-+-.+  ....+...+...  ...|++|+.||.|....  ...++...         .+.-
T Consensus        79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~l  145 (181)
T PLN00223         79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLGL  145 (181)
T ss_pred             HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence            345678899999999984332222  122233222110  12389999999997654  33222221         1110


Q ss_pred             --cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 --CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                        ...+...   ..++||+++.|+.+++++|...+
T Consensus       146 ~~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        146 HSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             cccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence              0111111   11368899999999999997655

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.67  E-value=7.2e-16  Score=118.48  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|++|+|||||+|++++....      ...|..     .. +..   .+|||||....       .......+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VE-YND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EE-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            6999999999999999999987641      111211     11 222   68999996321       11223333334


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (301)
                      ++++|++++|+|++++.+.....++.    .++.    |+++++||+|+.... ...+.         ...+....+. +
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~~----p~ilv~NK~Dl~~~~-~~~~~---------~~~~~~~~~~~~  121 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IFVK----PVIGLVTKIDLAEAD-VDIER---------AKELLETAGAEP  121 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hccC----CeEEEEEeeccCCcc-cCHHH---------HHHHHHHcCCCc
Confidence            68889999999998555543333222    2222    899999999975420 11111         2233333343 3


Q ss_pred             eEEecCCCcccccchhHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLV  204 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l  204 (301)
                      ++.      .|++++.+++++++++
T Consensus       122 ~~~------~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528       122 IFE------ISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEE------EecCCCCCHHHHHHHH
Confidence            444      7888899999999886

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN03108 Rab family protein; Provisional

Probab=99.67  E-value=3.6e-15  Score=122.31  Aligned_cols=159  Identities=15%  Similarity=0.106  Sum_probs=94.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||++++++...........+.+...  .... .++  ..+.+|||||...           +...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~-~~~~~i~l~l~Dt~G~~~-----------~~~~   71 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMIT-IDNKPIKLQIWDTAGQES-----------FRSI   71 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEE-ECCEEEEEEEEeCCCcHH-----------HHHH
Confidence            3789999999999999999999775422221111111111  1112 333  3578999999432           1111


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ....+..+|++++|+|++++-+... ..++..+.......  .|++++.||+|+........++         ...+...
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~  140 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE  140 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence            2233567899999999984433333 23444444433322  3999999999976431011111         2233334


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+..++.      +|++++.++++++.++...+
T Consensus       141 ~~~~~~e------~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        141 HGLIFME------ASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            4445554      78888899999998886554

>cd00879 Sar1 Sar1 subfamily

Probab=99.67  E-value=1.5e-15  Score=122.61  Aligned_cols=167  Identities=9%  Similarity=-0.028  Sum_probs=92.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||++++.+......     .+|.......+. +++..+.+|||||...           .....
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~-~~~~~~~l~D~~G~~~-----------~~~~~   80 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELT-IGNIKFKTFDLGGHEQ-----------ARRLW   80 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence            358899999999999999999998664211     112222222233 5678899999999433           11122


Q ss_pred             hccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCC-ccccHHHHhcccCCchHH---HH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLK---EI  172 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~l~---~~  172 (301)
                      ..+++++|++++|+|+++.-+-. ....+..+..... ....|+++++||+|+... ....+.+++.. ......   .+
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~  158 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-LANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGVSL  158 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccccc
Confidence            23456779999999998332111 1222222222111 122499999999997643 11122222211 000000   00


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..... +...   ...+||+++.|+.++++++...
T Consensus       159 ~~~~~-~~~~---~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         159 KVSGI-RPIE---VFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccCc-eeEE---EEEeEecCCCChHHHHHHHHhh
Confidence            00001 1111   1247999999999999998654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.67  E-value=3.2e-15  Score=139.66  Aligned_cols=162  Identities=17%  Similarity=0.236  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .|+++|+.++|||||+++|+|...-... ....+.|.......+...++..+.+|||||..+           +...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence            6899999999999999999985421111 112356666554444434667889999999532           2233333


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC--
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--  177 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  177 (301)
                      ...++|++++|+|++.++...+...+..+.. ++..   ++++++||+|..+.  ..++.....     +..++...+  
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~  139 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA  139 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence            4567799999999997788888877776654 3432   46899999998754  444444443     555554443  


Q ss_pred             -CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       .++++      +|+.++.|+++|++.|......
T Consensus       140 ~~~ii~------VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        140 EAKLFV------TAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCcEEE------EeCCCCCCCHHHHHHHHHhhcc
Confidence             23444      7888899999999999876543

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.67  E-value=6.4e-15  Score=117.31  Aligned_cols=161  Identities=19%  Similarity=0.132  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++..... ..   ...+|...........++  ..+.+|||||.....           ...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~---~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF-PS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RLR   66 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CC---CCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-----------hhh
Confidence            6799999999999999999997654 21   122233222211112344  467899999965421           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC-----CchHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~l~  170 (301)
                      ..++.++|++++|+|++++-+-...  .++..+....+ .  .|+++|.||.|+...  ..+.+.+....     .+...
T Consensus        67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~  141 (175)
T cd01874          67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE  141 (175)
T ss_pred             hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence            2346788999999999855444432  35555554432 2  399999999997543  22222121100     00112


Q ss_pred             HHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+....+ ..++.      +||+++.|+.++++.+..
T Consensus       142 ~~a~~~~~~~~~e------~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         142 KLARDLKAVKYVE------CSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             HHHHHhCCcEEEE------ecCCCCCCHHHHHHHHHH
Confidence            2333334 34555      889999999999988765

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.67  E-value=4.7e-15  Score=117.92  Aligned_cols=162  Identities=21%  Similarity=0.160  Sum_probs=96.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      |+|+|.+|+|||||++++++.......    ..+...........++.  .+.+|||||.....           .....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEVDGKPVELGLWDTAGQEDYD-----------RLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEECCEEEEEEEEECCCCcccc-----------hhchh
Confidence            589999999999999999986642211    12222222111223443  57899999965421           11222


Q ss_pred             cCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc---C-CchHHHHH
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLKEIL  173 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~---~-~~~l~~~~  173 (301)
                      .+.++|++++|+|++++-+-..  ..++..+....+ .  .|++++.||+|+.... ....++....   . ......+.
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  141 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA  141 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence            4678899999999985433333  235555555433 2  3999999999976431 1121111100   0 01123344


Q ss_pred             HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+. .++.      +|++++.+++++++.+.+.+
T Consensus       142 ~~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      142 KRIGAVKYLE------CSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             HHcCCcEEEE------ecCCCCCCHHHHHHHHHHHh
Confidence            44453 5555      78889999999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.67  E-value=1.6e-15  Score=119.69  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +|+|+|++|+|||||++++++......-    ..|. ....... ..++.  .+.+|||||......      .....+ 
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-   68 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEY----DPNLESLYSRQV-TIDGEQVSLEILDTAGQQQADT------EQLERS-   68 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcccccc----CCChHHhceEEE-EECCEEEEEEEEECCCCccccc------chHHHH-
Confidence            4899999999999999999865431111    1111 1111112 23444  578999999764110      011122 


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                         ++.+|++++|+|++++-+-.. ..++..+..........|+++|.||+|....  ..+...       ....+....
T Consensus        69 ---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~  136 (165)
T cd04146          69 ---IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASEL  136 (165)
T ss_pred             ---HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHc
Confidence               345699999999985433333 3345555553210112399999999996533  111110       022333444


Q ss_pred             CCceEEecCCCcccccch-hHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~  208 (301)
                      +..++.      +|++.+ .++.+++..+.+.+
T Consensus       137 ~~~~~e------~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         137 GCLFFE------VSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence            545554      777777 58999999887644

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.67  E-value=2.9e-15  Score=118.46  Aligned_cols=158  Identities=13%  Similarity=0.071  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|++|||||||++.+.+..  ....   .+|.......+. ..+..+.+|||||...           +......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLR-LDKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEE-ECCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            48999999999999999999862  2221   112211222233 4677899999999432           22222345


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +..+|++++|+|++++.+-.+ ..++..+..... ....|+++|.||.|+...  ....+.+.. ..  +..+....+.+
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-~~--l~~~~~~~~~~  137 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEY-LS--LEKLVNENKSL  137 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHh-cC--cccccCCCCce
Confidence            678899999999984433332 233333332211 012499999999998655  333333332 10  12222222222


Q ss_pred             eEEecCCCcccccch------hHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGT------EQVRQLLSLVN  205 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~------~~~~~L~~~l~  205 (301)
                      +..    ..+||.++      .|+.+.++||.
T Consensus       138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             EEE----EEeEceeCCCCccccCHHHHHHHHh
Confidence            222    12566666      78999999984

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.67  E-value=1.2e-15  Score=119.05  Aligned_cols=156  Identities=18%  Similarity=0.173  Sum_probs=88.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
                      |+|+|++|+|||||+|+|++.......    .+|......... .++..+.+|||||...           +......++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            899999999999999999987652221    222222222222 4557889999999543           112222335


Q ss_pred             CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188          102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (301)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (301)
                      ..+|++++|+|++...+... ...+..+..... ....|+++++||+|....  ....+.... ..  +... .....++
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~-~~--~~~~-~~~~~~~  138 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQ-MN--LKSI-TDREVSC  138 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHH-hC--cccc-cCCceEE
Confidence            67799999999983221111 122222221110 012389999999997654  333222221 00  0000 0001122


Q ss_pred             EEecCCCcccccchhHHHHHHHHHHH
Q 022188          181 VLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +.      .|++++.+++++++++..
T Consensus       139 ~~------~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         139 YS------ISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EE------EEeccCCChHHHHHHHhh
Confidence            33      688889999999998854

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.66  E-value=5.4e-15  Score=116.22  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++.......    ..++..........++  ..+.+|||||....           ....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~   65 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcccc----CCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence            37999999999999999999976642211    1111111111122333  46889999995542           1112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .......+++++|+++.++-+-.. ..++..+..... ....|+++++||+|..........+         ...+....
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~  135 (164)
T cd04139          66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW  135 (164)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence            223456699999999874322222 233333333311 1223999999999976421011111         22333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      .|+.++.|+++++..+...+
T Consensus       136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         136 GVPYVE------TSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCeEEE------eeCCCCCCHHHHHHHHHHHH
Confidence            555555      78889999999999987654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.66  E-value=1.7e-13  Score=116.37  Aligned_cols=151  Identities=25%  Similarity=0.393  Sum_probs=103.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCC--CCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc--
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGS--SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS--   86 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~--   86 (301)
                      -..+|.++|++|.|||||+|+|++.......    ...  ...+.......... .++  ..+++||||||+|.....  
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            3579999999999999999999988442221    111  12333333333222 223  367999999999975432  


Q ss_pred             -----HHHHHHHHHHHh----------ccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           87 -----EFVGKEIVKCLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        87 -----~~~~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                           ..+..++..++.          ....++|++||.+.++ ++++..+...++.|.+.    +  ++|-|+.|+|.+
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD~l  175 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKADTL  175 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--CeeeeeeccccC
Confidence                 122233333332          1135789999999876 78999998888777654    2  799999999999


Q ss_pred             CCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      ..  .++..+...     ++..+..+..+++
T Consensus       176 T~--~El~~~K~~-----I~~~i~~~nI~vf  199 (373)
T COG5019         176 TD--DELAEFKER-----IREDLEQYNIPVF  199 (373)
T ss_pred             CH--HHHHHHHHH-----HHHHHHHhCCcee
Confidence            88  777777766     7777777777766

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.66  E-value=4.4e-15  Score=120.72  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +|+++|.+|+|||||++++++......    ...|.. .....+. +.+  ..+.+|||||.....           ...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~-----------~~~   64 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK----YRRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSFP-----------AMR   64 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc----CCCchhhheeEEEE-ECCEEEEEEEEECCCchhhh-----------HHH
Confidence            489999999999999999998764221    111211 1111122 344  467899999965521           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++.+-.. ..++..+.+... ....|+++++||+|..... ..+... ..     ........
T Consensus        65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~~-----~~~~~~~~  136 (198)
T cd04147          65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-DA-----LSTVELDW  136 (198)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-HH-----HHHHHhhc
Confidence            224567899999999984433333 233344444322 1224999999999976420 111110 00     11111122


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..++.      .|++++.++.++++++...+.
T Consensus       137 ~~~~~~------~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         137 NCGFVE------TSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             CCcEEE------ecCCCCCCHHHHHHHHHHHhh
Confidence            233444      788899999999999987664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.66  E-value=5.6e-15  Score=137.64  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC--ccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+++|+.++|||||+|+|+|...  ++. ....+.|.......+. .++..+.+|||||..+           +...+.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe~-----------f~~~~~   68 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHEK-----------FISNAI   68 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEE-eCCEEEEEEECCCHHH-----------HHHHHH
Confidence            699999999999999999998542  111 1123456555544444 4568899999999422           333333


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  177 (301)
                      ..+.++|++++|+|++.+........+..+.. ++.+   ++++++||+|..+.  ..++.....     +..++...+ 
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~  137 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF  137 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence            44567899999999997676777666666544 3442   49999999998755  434333333     445554432 


Q ss_pred             ---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 ---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                         .++++      +|+.++.|+++++..+...+..
T Consensus       138 ~~~~~ii~------vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       138 LKNAKIFK------TSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCcEEE------EeCCCCCCchhHHHHHHHHHHh
Confidence               23444      7888899999999988777654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.66  E-value=2.3e-15  Score=142.89  Aligned_cols=159  Identities=17%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|+.|+|||||+++|.+..+...  ...+.|.....+.+. +++..++||||||..++..       ...   
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F~~-------m~~---  355 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVE-TNGGKITFLDTPGHEAFTA-------MRA---  355 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEE-ECCEEEEEEECCCCccchh-------HHH---
Confidence            447899999999999999999987665322  223455555555544 6678999999999776421       122   


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                       ..+..+|++|+|++++++........+..+... +  +  |+++++||+|+...+...+...+..     ...+....+
T Consensus       356 -rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-~--v--PiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g  424 (787)
T PRK05306        356 -RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-G--V--PIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG  424 (787)
T ss_pred             -hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-C--C--cEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence             224566999999999877777776666655432 3  2  8999999999854311112111111     001111222


Q ss_pred             --CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                        .++++      +|+.++.|+++|+++|..
T Consensus       425 ~~vp~vp------vSAktG~GI~eLle~I~~  449 (787)
T PRK05306        425 GDTIFVP------VSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CCceEEE------EeCCCCCCchHHHHhhhh
Confidence              22333      788999999999999864

>cd00157 Rho Rho (Ras homology) family

Probab=99.66  E-value=3.4e-15  Score=118.28  Aligned_cols=161  Identities=19%  Similarity=0.094  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++++........    .+............  ...+.+|||||......           ..
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~   65 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV----PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LR   65 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence            479999999999999999999876521111    11111111111122  34689999999765311           11


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh----cccCCchHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE  171 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~----~~~~~~~l~~  171 (301)
                      ...++.+|++++|+|.+++.+...  ..++..+....+   ..|+++|+||+|+...  .......    ..-.......
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~  140 (171)
T cd00157          66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK  140 (171)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence            123467799999999984333222  334445544433   2399999999998755  2211100    0000001223


Q ss_pred             HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +....+. .++.      .|++.+.++.++++.+.+
T Consensus       141 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         141 LAKEIGAIGYME------CSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHHhCCeEEEE------eecCCCCCHHHHHHHHhh
Confidence            3333343 4444      788888999999988753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04126 Rab20 Rab20 subfamily

Probab=99.66  E-value=1e-14  Score=119.73  Aligned_cols=113  Identities=22%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|.+|+|||||++++++......     ..|....... ..+....+.+|||||.....        .+   ...
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~~--------~l---~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYL-KQWGPYNISIWDTAGREQFH--------GL---GSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEE-EEeeEEEEEEEeCCCcccch--------hh---HHH
Confidence            3699999999999999999997765221     1222222222 22445678999999965421        11   122


Q ss_pred             cCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      +++.+|++|+|+|++++.+-... .++..+.+....+.  |+++|.||+|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~--piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC--LFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccccc
Confidence            36788999999999955444442 34444444333333  8999999999764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04148 RGK RGK subfamily

Probab=99.66  E-value=6.5e-15  Score=121.62  Aligned_cols=161  Identities=20%  Similarity=0.097  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .+|+++|.+|+|||||++++++.... .......+.........+. .....+.+|||||...      .    +...  
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~------~----~~~~--   67 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM------W----TEDS--   67 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch------H----HHhH--
Confidence            37999999999999999999765542 1111111101111111111 2335689999999651      1    1111  


Q ss_pred             ccCC-CccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                       ++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+...  ..+....       ...+....
T Consensus        68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~--~~v~~~~-------~~~~a~~~  136 (221)
T cd04148          68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS--REVSVQE-------GRACAVVF  136 (221)
T ss_pred             -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc--ceecHHH-------HHHHHHHc
Confidence             223 7799999999985433332 334444444321 123499999999997644  1111100       12233334


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      +|+..+.+++++++++...+..
T Consensus       137 ~~~~~e------~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         137 DCKFIE------TSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCeEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence            445554      7888999999999999877653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.65  E-value=1.2e-14  Score=116.20  Aligned_cols=165  Identities=15%  Similarity=0.096  Sum_probs=101.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+++|.+|+|||||++++.+......    ..+|...........++  ..+.+|||+|...           +..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~~   68 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YDN   68 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hHh
Confidence            347899999999999999999987654221    12222221111112333  3679999999432           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---c-CCchH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPL  169 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~-~~~~l  169 (301)
                      ....+++++|++++|+|++++.+-..  ..++..+....+ .  .|+++|.||.|+.... ..+.+....   . .....
T Consensus        69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~  144 (182)
T cd04172          69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG  144 (182)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence            23345788999999999996655444  356666666543 2  3999999999975321 001000000   0 00113


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHH
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~  207 (301)
                      ..+....+. .++.      +||+++.+ +++++..+...
T Consensus       145 ~~~a~~~~~~~~~E------~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         145 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHHHcCCCEEEE------CCcCCCCCCHHHHHHHHHHH
Confidence            445555564 5665      89999998 99999887653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.65  E-value=1.2e-14  Score=120.62  Aligned_cols=88  Identities=22%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+|+|++|+|||||+|+|+|..... + .....|...... ...+++..+.+|||||+.+..........++.    ..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-~-~~~~tT~~~~~g-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEV-A-AYEFTTLTCVPG-VLEYKGAKIQLLDLPGIIEGAADGKGRGRQVI----AV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccc-c-CCCCccccceEE-EEEECCeEEEEEECCCcccccccchhHHHHHH----Hh
Confidence            68999999999999999999876421 1 122333333322 23367889999999998764322222222222    24


Q ss_pred             CCCccEEEEEEecCC
Q 022188          101 KDGIHAFLVVFSVTN  115 (301)
Q Consensus       101 ~~~~~~il~v~~~~~  115 (301)
                      ++.+|++++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            567799999999873

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00876 Ras Ras family

Probab=99.65  E-value=8.6e-15  Score=114.53  Aligned_cols=155  Identities=19%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+|+|++|+|||||++++++... ....   ..++..........+  ...+.+||+||....           .....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-----------SAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEECCEEEEEEEEECCChHHH-----------HHHHH
Confidence            489999999999999999998763 2221   112221111112233  246789999995441           11112


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+...|++++|+|.+++-+..+ ..++..+...... ...|+++++||+|.........+ .        ...+....+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~~  135 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEWG  135 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH-H--------HHHHHHHcC
Confidence            23456699999999984333233 3344445444331 12399999999997653111111 1        233334444


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+++.      .|++.+.++.+++++|..
T Consensus       136 ~~~~~------~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         136 CPFIE------TSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CcEEE------eccCCCCCHHHHHHHHHh
Confidence            44444      788888999999998865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.65  E-value=1e-14  Score=116.72  Aligned_cols=161  Identities=20%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||++++++.......    ..|...........++  ..+.+|||||..+.           ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY----YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY-----------SILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccc----CcchhhhEEEEEEECCEEEEEEEEECCChHhh-----------HHHH
Confidence            68999999999999999999976542111    1111111111112333  35689999996542           1111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+...+++++++|.+++.+... ..++..+.+..+. ...|++++.||+|....  ..+...       ....+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~  136 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW  136 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence            223456799999999984333322 3333444443221 22389999999997533  111110       022333444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +.+++.      .|++++.++.+++.++.+.+...
T Consensus       137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         137 GAAFLE------SSARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence            444554      78888899999999998776543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01875 RhoG RhoG subfamily

Probab=99.65  E-value=2e-14  Score=116.12  Aligned_cols=165  Identities=17%  Similarity=0.134  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|..|+|||||++++........    ..+|...........++  ..+.+|||||...           +....
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l~   68 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRLR   68 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence            7899999999999999999986553211    12232221111111333  4678999999433           22222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CCchHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE  171 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~l~~  171 (301)
                      ..+++++|++++|+|++++-+-...  .++..+..... ..  |+++|.||.|+.... ...+......    .......
T Consensus        69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~~  144 (191)
T cd01875          69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NV--PILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGGA  144 (191)
T ss_pred             hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CC--CEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence            3457889999999999855444433  24444444322 33  999999999975431 1111111100    0011233


Q ss_pred             HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +....+. .++.      +||+++.++++++.++.+.+.
T Consensus       145 ~a~~~~~~~~~e------~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         145 LAKQIHAVKYLE------CSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             HHHHcCCcEEEE------eCCCCCCCHHHHHHHHHHHHh
Confidence            4444442 4554      788899999999999987653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK09866 hypothetical protein; Provisional

Probab=99.64  E-value=1.9e-13  Score=124.45  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=76.1

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..++++||||+.....  ..+.+.+...    ...+|+++||+|+...++..+...++.++.. +..  .|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence            5678999999987432  2233344443    4566999999999866788888888877764 321  28999999999


Q ss_pred             CCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ..+......+.....     +...+.....   .|....++||..+.+++.|++.|..
T Consensus       301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence            864311112221111     2222222111   1222334899999999999998865

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.64  E-value=5.3e-15  Score=139.28  Aligned_cols=162  Identities=14%  Similarity=0.190  Sum_probs=101.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-e--CCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K--DGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ..++|+|+|++|+|||||+++|.+.......  ..+.|.....+.... .  .+..+++|||||...           +.
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~  309 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS  309 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence            4579999999999999999999976553221  223444333333322 1  357899999999543           22


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ......+..+|++++|++++++........+..+... +  .  |+++++||+|........+...+..     ..-+..
T Consensus       310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-~--i--PiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e  379 (742)
T CHL00189        310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-N--V--PIIVAINKIDKANANTERIKQQLAK-----YNLIPE  379 (742)
T ss_pred             HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-C--c--eEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence            2222234566999999999877777766666665432 3  2  9999999999764311112222211     000111


Q ss_pred             HcC--CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+  .+++      +.||.++.|+++|++++....
T Consensus       380 ~~g~~vpvv------~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        380 KWGGDTPMI------PISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             hhCCCceEE------EEECCCCCCHHHHHHhhhhhh
Confidence            122  2333      388899999999999987643

>cd04131 Rnd Rnd subfamily

Probab=99.64  E-value=1.8e-14  Score=115.01  Aligned_cols=163  Identities=15%  Similarity=0.069  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++.+... +..   ..+|...........++  ..+.+|||||...           +....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~---~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY-PET---YVPTVFENYTASFEIDEQRIELSLWDTSGSPY-----------YDNVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-CCC---cCCceEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhcc
Confidence            5799999999999999999997654 221   12222211111111333  4678999999433           12222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCCchHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKPLKE  171 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~l~~  171 (301)
                      ..+++++|++++|+|.+++-+-..  ..++..+.+..+ ..  |+++|.||.|+.... ......-..    -..+....
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~--~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~  142 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NT--KVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA  142 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CC--CEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence            335788999999999986555544  356666666543 23  999999999975320 011000000    00011334


Q ss_pred             HHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHH
Q 022188          172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (301)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~  207 (301)
                      +....+. .++.      +||+++.+ +.+++..+...
T Consensus       143 ~a~~~~~~~~~E------~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         143 IAKQLGAEIYLE------CSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHhCCCEEEE------CccCcCCcCHHHHHHHHHHH
Confidence            5555554 4554      88888885 99999887663

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4.4e-15  Score=114.51  Aligned_cols=164  Identities=22%  Similarity=0.199  Sum_probs=111.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||||+-+.......+...+..+..-........ .....+.+|||.|...           +.....
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQER-----------y~slap   72 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQER-----------YHSLAP   72 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccc-----------cccccc
Confidence            3789999999999999998887555433233333332222222211 1235677999999443           333445


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+|++++++|+|.|+++.-+-.. +.|++.|+...+.++  -+.++.||+|+...-....++         ...+.+.-|
T Consensus        73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~~g  141 (200)
T KOG0092|consen   73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAESQG  141 (200)
T ss_pred             ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHhcC
Confidence            67999999999999994433333 668888887766543  456789999987531122222         344556667


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ..++.      .|++++.++.+|+..|.+.++..
T Consensus       142 ll~~E------TSAKTg~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  142 LLFFE------TSAKTGENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             CEEEE------EecccccCHHHHHHHHHHhccCc
Confidence            77776      89999999999999999988764

>cd04169 RF3 RF3 subfamily

Probab=99.64  E-value=5.2e-15  Score=125.12  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=87.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF--KASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (301)
                      .++|+|+|+.|+|||||+++|+.....  ..+..                  ..+.+.......+. +++..+.+|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCC
Confidence            478999999999999999999843211  00000                  01223333333444 7889999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~  158 (301)
                      ..++.       .+....+    ..+|++++|+|++.+.......+++.+.. .+.    |+++++||+|....   ...
T Consensus        81 ~~df~-------~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~~----P~iivvNK~D~~~a---~~~  141 (267)
T cd04169          81 HEDFS-------EDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RGI----PIITFINKLDREGR---DPL  141 (267)
T ss_pred             chHHH-------HHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHh-cCC----CEEEEEECCccCCC---CHH
Confidence            76531       2233333    45699999999986676665566555443 232    89999999997654   111


Q ss_pred             HHhcccCCchHHHHHHHcCCceEEecCC
Q 022188          159 DFLGHECPKPLKEILQLCDNRCVLFDNK  186 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (301)
                      ..        +..+...++.+.+++.-+
T Consensus       142 ~~--------~~~l~~~l~~~~~~~~~P  161 (267)
T cd04169         142 EL--------LDEIEEELGIDCTPLTWP  161 (267)
T ss_pred             HH--------HHHHHHHHCCCceeEEec
Confidence            21        233445556666665433

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.63  E-value=3e-14  Score=113.34  Aligned_cols=161  Identities=17%  Similarity=0.081  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe-EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|.+|+|||||+.++++.... ..   ..+|..... .... .++  ..+.+|||||....           ...
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~---~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFP-GE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY-----------DRL   65 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-Cc---CCCcceeeeEEEEE-ECCEEEEEEEEECCCchhh-----------hhh
Confidence            57999999999999999999875532 11   112221111 1122 334  46789999995432           122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CCchHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK  170 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~l~  170 (301)
                      ...++.++|++|+|+|++++-+-...  .++..+....+ +  .|+++|.||.|+.... ...+......    ......
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~  141 (174)
T cd01871          66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL  141 (174)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence            23346788999999999854443332  35555555432 2  3999999999975321 1111111100    001122


Q ss_pred             HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+....+. .++.      +||+++.+++++++.+.+
T Consensus       142 ~~~~~~~~~~~~e------~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         142 AMAKEIGAVKYLE------CSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHHHHcCCcEEEE------ecccccCCHHHHHHHHHH
Confidence            33444443 4444      889999999999988764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04177 RSR1 RSR1 subgroup

Probab=99.63  E-value=1.7e-14  Score=114.11  Aligned_cols=157  Identities=21%  Similarity=0.174  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++++......-    ..|...........++  ..+.+|||||......           ..
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-----------MR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccchh-----------hh
Confidence            57999999999999999999976642221    1122111111111333  4678999999665321           11


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..++++++|++.+++-+-.. ..+...+...... ...|++++.||.|..........+         ...+....
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~  136 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW  136 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence            223456799999999984333332 3344444443221 123999999999975431011111         12233333


Q ss_pred             C-CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      + .+++.      +||+.+.++.++++++...
T Consensus       137 ~~~~~~~------~SA~~~~~i~~~f~~i~~~  162 (168)
T cd04177         137 GNVPFYE------TSARKRTNVDEVFIDLVRQ  162 (168)
T ss_pred             CCceEEE------eeCCCCCCHHHHHHHHHHH
Confidence            3 33444      7888999999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04133 Rop_like Rop subfamily

Probab=99.63  E-value=2.4e-14  Score=113.87  Aligned_cols=164  Identities=20%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||+.++..... ...   ..+|...........++  ..+.+|||+|.....           ...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~---~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~-----------~~~   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF-PTD---YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN-----------RLR   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC-CCC---CCCcceeeeEEEEEECCEEEEEEEEECCCCcccc-----------ccc
Confidence            5799999999999999999997654 221   12222211111111333  467999999965432           112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH-HHH-hcccCCchHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDF-LGHECPKPLKEIL  173 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~~-~~~~~~~~l~~~~  173 (301)
                      ..+++++|++|+|+|.+++-+-...  .++..+....+ +.  |+++|.||+|+.+.. ... .+. ...-..+....+.
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~a  142 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NV--PIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEELR  142 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHHH
Confidence            2356788999999999966655543  46666665433 33  999999999975320 000 000 0000001123444


Q ss_pred             HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+. .++.      +||+++.++++++..+.+.+
T Consensus       143 ~~~~~~~~~E------~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         143 KQIGAAAYIE------CSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             HHcCCCEEEE------CCCCcccCHHHHHHHHHHHH
Confidence            44454 2444      89999999999999988764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.63  E-value=1e-14  Score=123.75  Aligned_cols=153  Identities=23%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCcHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFVG   90 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~~   90 (301)
                      ++|+|+|.+|+|||||+|+|++.........      ....+.......... .++  ..+++||||||++.... ...+
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCW   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhh
Confidence            7899999999999999999999876544310      111222222222221 233  36799999999985432 2222


Q ss_pred             HHH--------HHHHhc---------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           91 KEI--------VKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        91 ~~~--------~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +.+        ..++..         ...++|++||+++++ +++...+...++.|...    +  |+|-|+.|+|.+..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence            223        333321         124689999999987 68888888887777654    3  89999999999877


Q ss_pred             ccccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (301)
                        .++..+...     +...+...+.+++.|...
T Consensus       158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  158 --EELQAFKQR-----IREDLEENNIKIFDFPED  184 (281)
T ss_dssp             --HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred             --HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence              777776666     777788888887776654

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.5e-14  Score=113.68  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+++|.+|+|||+++-++.......+-.+..+..-.  ...+. .++.  .+.+|||.|-           +.+..
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk--~kti~-l~g~~i~lQiWDtaGQ-----------erf~t   76 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFK--IKTIE-LDGKKIKLQIWDTAGQ-----------ERFRT   76 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEE--EEEEE-eCCeEEEEEEEEcccc-----------hhHHH
Confidence            4579999999999999999999866542222222222222  22222 3333  6799999992           23445


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ...+++++++++++|+|+++.-+-+. ..|++.+.+....++  |.++|.||+|....  ..+..       +.-..+..
T Consensus        77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~lA~  145 (207)
T KOG0078|consen   77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEALAR  145 (207)
T ss_pred             HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHHHHH
Confidence            55667899999999999995444444 568889998876666  99999999997653  11111       11345667


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..|.+.+.      +||+.+.++.+.+-.+...+.
T Consensus       146 e~G~~F~E------tSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  146 EYGIKFFE------TSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             HhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence            77888877      899999999998887765543

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.62  E-value=7e-15  Score=133.09  Aligned_cols=156  Identities=19%  Similarity=0.245  Sum_probs=97.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC---------------CCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~~   67 (301)
                      .+..+|+++|+.++|||||+++|+.......              +..               ..+.|.......+. ++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~   82 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TD   82 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cC
Confidence            3458999999999999999999984432110              100               23555555555444 67


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      +..+.+|||||..++.       ..+.    .....+|++++|+|+++  .+.......+..+.. ++..   |+++++|
T Consensus        83 ~~~i~liDtpG~~~~~-------~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivviN  147 (425)
T PRK12317         83 KYYFTIVDCPGHRDFV-------KNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAIN  147 (425)
T ss_pred             CeEEEEEECCCcccch-------hhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEEE
Confidence            8899999999965421       1222    22456799999999986  565555555555543 3432   7999999


Q ss_pred             CCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      |+|+.......+......     +..++...+.     .+++      +|+.++.++.+
T Consensus       148 K~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~~~ii~------iSA~~g~gi~~  195 (425)
T PRK12317        148 KMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDDIPFIP------VSAFEGDNVVK  195 (425)
T ss_pred             ccccccccHHHHHHHHHH-----HHHHHHhhCCCcCcceEEE------eecccCCCccc
Confidence            999864311223333333     4555554443     2333      67777777765

>CHL00071 tufA elongation factor Tu

Probab=99.62  E-value=1.4e-14  Score=130.15  Aligned_cols=138  Identities=17%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..+.++|+++|++++|||||+|+|++.......              ....+.|.......+. +++..+.++||||..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChHH
Confidence            445689999999999999999999975321100              0013444444333333 5677899999999432


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~  160 (301)
                                 +...+......+|++++|+|+...+...+...+..+... +.    | +++++||+|....  ....+.
T Consensus        88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~  149 (409)
T CHL00071         88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLEL  149 (409)
T ss_pred             -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHH
Confidence                       222223334567999999999977888888877776543 44    5 7789999998754  333232


Q ss_pred             h-cccCCchHHHHHHHcC
Q 022188          161 L-GHECPKPLKEILQLCD  177 (301)
Q Consensus       161 ~-~~~~~~~l~~~~~~~~  177 (301)
                      + .+     +..++...+
T Consensus       150 ~~~~-----l~~~l~~~~  162 (409)
T CHL00071        150 VELE-----VRELLSKYD  162 (409)
T ss_pred             HHHH-----HHHHHHHhC
Confidence            2 23     566666554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.62  E-value=6.8e-15  Score=140.39  Aligned_cols=120  Identities=22%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c-CC-------------CCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--S-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~-~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ..+.++|+|+|+.|+|||||+|+|+.......  + ..             ..+.|.......+. +++..+++|||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCC
Confidence            34578999999999999999999974321100  0 00             12445555455444 78899999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .++.       .+...++    ..+|++++|+|+..+....+...+..+... +.    |+++++||+|....
T Consensus        86 ~~~~-------~~~~~~l----~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFT-------VEVERSL----RVLDGAVAVLDAVGGVQPQSETVWRQANRY-EV----PRIAFVNKMDKTGA  142 (689)
T ss_pred             cchh-------HHHHHHH----HHhCEEEEEEeCCCCCChhHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            7742       1233333    345999999999877777777777765543 32    89999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.62  E-value=3e-14  Score=113.38  Aligned_cols=161  Identities=18%  Similarity=0.139  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe-EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|++|+|||||++++.+......-    .+|..... ..+. .++  ..+.+|||||....           ...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIE-VDGKQVELALWDTAGQEDY-----------DRL   65 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEE-ECCEEEEEEEEeCCCchhh-----------hhc
Confidence            57999999999999999999976542211    11221111 1122 333  36789999995442           111


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc--CC---chH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CP---KPL  169 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~--~~---~~l  169 (301)
                      ....+.++|++++|++++++-+-..  ..++..+....+ .  .|++++.||+|+...  ....+.+...  ..   ...
T Consensus        66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~  140 (175)
T cd01870          66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG  140 (175)
T ss_pred             cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence            1224577899999999984432222  224444444322 2  399999999997643  2221111110  00   011


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +.+....+. .++.      +||+.+.++++++.++...
T Consensus       141 ~~~~~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         141 RDMANKIGAFGYME------CSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             HHHHHHcCCcEEEE------eccccCcCHHHHHHHHHHH
Confidence            223333332 3443      7888999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.62  E-value=1.2e-14  Score=119.88  Aligned_cols=165  Identities=19%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCC-------------CCcceeeE--e---------------------EEEE
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-------------SGVTKTCE--M---------------------KTTV   64 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-------------~~~t~~~~--~---------------------~~~~   64 (301)
                      +|+++|+.++|||||+++++.... ..+...             .+.|....  .                     ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            489999999999999999985322 111000             01110000  0                     0112


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      ...+..++++||||..++       .......+.  ...+|++++|+|+..+++..+...+.++... +.    |+++++
T Consensus        80 ~~~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvv  145 (224)
T cd04165          80 EKSSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVV  145 (224)
T ss_pred             eeCCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEE
Confidence            245678999999995431       222332222  1367999999999878888888888887764 43    899999


Q ss_pred             eCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEE--------------------ecCCCcccccchhHHHHHHHHH
Q 022188          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL--------------------FDNKTKDEAKGTEQVRQLLSLV  204 (301)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~L~~~l  204 (301)
                      ||+|....  ..+...+..     +...+...+..-.+                    ..+....|+.++.|++.|...|
T Consensus       146 NK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L  218 (224)
T cd04165         146 TKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL  218 (224)
T ss_pred             ECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence            99998755  445554444     44444322211101                    1122336888899999999888


Q ss_pred             HHH
Q 022188          205 NSV  207 (301)
Q Consensus       205 ~~~  207 (301)
                      ..+
T Consensus       219 ~~l  221 (224)
T cd04165         219 NLL  221 (224)
T ss_pred             Hhc
Confidence            543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.62  E-value=1.9e-14  Score=116.70  Aligned_cols=150  Identities=15%  Similarity=0.051  Sum_probs=94.1

Q ss_pred             EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        25 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|..|+|||||+++++.... ...   ...|.....  ..+. .+  ...+.+|||||...           +......+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f-~~~---~~~Tig~~~~~~~~~-~~~~~~~l~iwDt~G~e~-----------~~~l~~~~   64 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF-EKK---YVATLGVEVHPLVFH-TNRGPIRFNVWDTAGQEK-----------FGGLRDGY   64 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC-CCC---CCCceeEEEEEEEEE-ECCEEEEEEEEECCCchh-----------hhhhhHHH
Confidence            69999999999999986543 211   122332222  1122 22  35789999999543           22222335


Q ss_pred             CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      ++++|++++|+|++++.+-.. ..++..+..... .+  |+++|.||+|+...  ....+         ...+....+..
T Consensus        65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~---------~~~~~~~~~~~  130 (200)
T smart00176       65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDVKDR--KVKAK---------SITFHRKKNLQ  130 (200)
T ss_pred             hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CC--CEEEEEECcccccc--cCCHH---------HHHHHHHcCCE
Confidence            778899999999996554443 345555665432 33  99999999997432  11011         11223333445


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ++.      +||+++.++.+++.++...+..
T Consensus       131 ~~e------~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      131 YYD------ISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             EEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            554      8899999999999999876644

Ran is involved in the active transport of proteins through nuclear pores.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.62  E-value=2.9e-14  Score=119.37  Aligned_cols=158  Identities=20%  Similarity=0.166  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|..|+|||||++++++.... ..   ...|.. .....+. .++  ..+.+|||||..+..           ..
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~---y~pTi~d~~~k~~~-i~~~~~~l~I~Dt~G~~~~~-----------~~   64 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQ---YTPTIEDFHRKLYS-IRGEVYQLDILDTSGNHPFP-----------AM   64 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCC-CC---CCCChhHhEEEEEE-ECCEEEEEEEEECCCChhhh-----------HH
Confidence            36999999999999999999876542 21   112221 1111112 344  467899999965421           11


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-------CccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-------GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~  168 (301)
                      ...++..+|++|+|+|++++-+-.. ..++..+.+..       ......|++++.||+|+........++         
T Consensus        65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------  135 (247)
T cd04143          65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------  135 (247)
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence            1123457799999999985433333 23444443321       011234999999999976421011111         


Q ss_pred             HHHHHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +..++... +..++.      +||+++.++++++.+|....
T Consensus       136 i~~~~~~~~~~~~~e------vSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         136 VEQLVGGDENCAYFE------VSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             HHHHHHhcCCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence            22232211 233444      78889999999999998765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=99.61  E-value=3.6e-14  Score=112.84  Aligned_cols=162  Identities=18%  Similarity=0.082  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++++.+.......    .+|...........++.  .+.+|||||......           ..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------LR   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence            36999999999999999999876642221    12222111111113333  467999999655321           11


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l~  170 (301)
                      ...+...|++++|++..++-+....  .++..+... ...  .|++++.||+|+...  ......+...    .. ....
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ  140 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence            2246788999999999854333332  345555443 222  399999999997543  1111111000    00 0112


Q ss_pred             HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+....+. .++.      +||+++.|++++++.+...
T Consensus       141 ~~~~~~~~~~~~e------~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         141 KLAKEIGAHCYVE------CSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             HHHHHcCCCEEEE------ecCCcCCCHHHHHHHHHHH
Confidence            33333443 3443      7889999999999887653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK12736 elongation factor Tu; Reviewed

Probab=99.61  E-value=4.3e-14  Score=126.38  Aligned_cols=164  Identities=16%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      .+.++|+++|+.++|||||+++|++...-..              .....+.|.......+. .++..+.+|||||..+ 
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~~-   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHAD-   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHHH-
Confidence            3458999999999999999999987321000              00123455555444333 4567889999999432 


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                                +...+......+|++++|+|+..+....+...+..+... +.    | +++++||+|....  ..+.+.+
T Consensus        88 ----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i  150 (394)
T PRK12736         88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV  150 (394)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence                      222222233567999999999877777877777776554 44    5 6789999998643  3333322


Q ss_pred             cccCCchHHHHHHHcCC-----ceEEecCCCcccccch--------hHHHHHHHHHHHHHh
Q 022188          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV  209 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~L~~~l~~~~~  209 (301)
                      ..    .+..++...+.     ++++      .|+.++        .++..|++.+...++
T Consensus       151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            21    15555555543     3444      444443        357788888877765

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=5.8e-15  Score=117.51  Aligned_cols=162  Identities=14%  Similarity=0.082  Sum_probs=99.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+++|+.||||||+++.|.......     ..+|.......+. ..+..+.+||.+|-..           +...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~~-----------~~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQES-----------FRPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSGG-----------GGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEecccccc-----------cccc
Confidence            355899999999999999999998654322     2234444444444 5788999999999432           2334


Q ss_pred             HhccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      +..++.++|+++||+|.++.-.-. ....+..+..... -...|++++.||.|....  ...++.... ..  +..+.  
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~~~--~~~~~i~~~-l~--l~~l~--  146 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLPDA--MSEEEIKEY-LG--LEKLK--  146 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTSTTS--STHHHHHHH-TT--GGGTT--
T ss_pred             ceeeccccceeEEEEecccceeecccccchhhhcchhh-cccceEEEEeccccccCc--chhhHHHhh-hh--hhhcc--
Confidence            445678899999999998322212 2223332222100 123499999999997655  333332221 10  11111  


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ...++..+    .+++.++.|+.+.++||.+.
T Consensus       147 ~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  147 NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred             cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence            12233332    36778899999999999764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.61  E-value=2.1e-14  Score=114.16  Aligned_cols=161  Identities=20%  Similarity=0.152  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+++++|++|+|||||++++.+... ...   ..+|...........++  ..+.+|||||....           ....
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTE---YVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-----------DKLR   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCceeeeeeEEEEECCEEEEEEEEECCCChhh-----------cccc
Confidence            3689999999999999999986553 221   12222111111112333  46788999996442           1112


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-CC---chHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CP---KPLKE  171 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-~~---~~l~~  171 (301)
                      ..++.++|++++|+|++++-+-..  ..++..+..... +  .|++++.||+|+.... ..+....... ..   .....
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA  141 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence            334678899999999985544333  345555554322 2  3999999999976431 1111111000 00   01223


Q ss_pred             HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHH
Q 022188          172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      +....+. .++.      +|++++.+++++++.+.
T Consensus       142 ~a~~~~~~~~~e------~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         142 LAEKIGACEYIE------CSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHhCCCeEEE------EeCCCCCCHHHHHHHHH
Confidence            3333443 4454      88899999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.61  E-value=2.1e-14  Score=133.56  Aligned_cols=160  Identities=17%  Similarity=0.297  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKA-FKA-S------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (301)
                      ++|+|+|+.++|||||+++|+...- +.. +            ....+.|.......+. |++..+++|||||..++   
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF---   77 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADF---   77 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHH---
Confidence            6899999999999999999985321 111 0            0112456665555555 78899999999997663   


Q ss_pred             cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~  165 (301)
                          ..++..++    ..+|++++|+|+..+.....+.++..+... +.    |+++++||+|....   ...+.+.+  
T Consensus        78 ----~~ev~~~l----~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e--  139 (594)
T TIGR01394        78 ----GGEVERVL----GMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE--  139 (594)
T ss_pred             ----HHHHHHHH----HhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence                22344444    355999999999867777777777776653 33    89999999997543   22222222  


Q ss_pred             CchHHHHHHHcC-------CceEEecCCCcccccchh----------HHHHHHHHHHHHHhh
Q 022188          166 PKPLKEILQLCD-------NRCVLFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ  210 (301)
Q Consensus       166 ~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------~~~~L~~~l~~~~~~  210 (301)
                         +..++..++       .+++.      .|++.+.          ++..|++.+...++.
T Consensus       140 ---i~~l~~~~g~~~e~l~~pvl~------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       140 ---VFDLFAELGADDEQLDFPIVY------ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ---HHHHHHhhccccccccCcEEe------chhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence               333332222       22222      4555553          788999998887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.61  E-value=4.8e-14  Score=109.65  Aligned_cols=153  Identities=20%  Similarity=0.246  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||+|++++.. ++.... ...+.......+. .++  ..+.+|||||..+...    ...      
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~----~~~------   68 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYRA----IRR------   68 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEE-ECCEEEEEEEEECCCcccchH----HHH------
Confidence            689999999999999999999887 333221 2223333222223 455  6789999999554211    111      


Q ss_pred             hccCCCccEEEEEEecCCC-CC--HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNR-FS--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~-~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                       .....++.+++++|.... .+  .........+......  ..|+++++||+|....  . ....        ....+.
T Consensus        69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~  134 (161)
T TIGR00231        69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA  134 (161)
T ss_pred             -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence             112234666666666522 11  1112333333333221  2399999999998654  2 1111        222232


Q ss_pred             HcC-CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ..+ .++++      .++..+.++.+++++|.
T Consensus       135 ~~~~~~~~~------~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       135 KLNGEPIIP------LSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hccCCceEE------eecCCCCCHHHHHHHhh
Confidence            222 23343      77888899999998874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01892 Miro2 Miro2 subfamily

Probab=99.61  E-value=1.9e-14  Score=113.95  Aligned_cols=158  Identities=13%  Similarity=-0.014  Sum_probs=91.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      +..+|+++|.+|+|||||++++++....+..   ..+|..  ....... .++  ..+.+|||+|-.....         
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~---~~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~~---------   69 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA---YSPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAIL---------   69 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCccc---CCCccCcceEEEEEE-ECCeEEEEEEEecCCcccccc---------
Confidence            3478999999999999999999987652011   122221  1111222 334  4678899999554211         


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                        ....++.++|++++|+|++++-+-..  ...++... ......|+++|+||+|+...  ...  ....     ...+.
T Consensus        70 --~~~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~  135 (169)
T cd01892          70 --LNDAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFC  135 (169)
T ss_pred             --cchhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEccccccc--ccc--cccC-----HHHHH
Confidence              11223567899999999984422111  12222222 11112399999999997533  111  0000     22333


Q ss_pred             HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+. .++.      .|+..+.+++++++.+.+.+
T Consensus       136 ~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         136 RKLGLPPPLH------FSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             HHcCCCCCEE------EEeccCccHHHHHHHHHHHh
Confidence            33332 2233      78888899999999987765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.61  E-value=2.2e-14  Score=129.48  Aligned_cols=171  Identities=15%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC------CCc-c---c----cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGR------KAF-K---A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~------~~~-~---~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..+.++|+++|+.++|||||+++|++.      ... .   .    .....+.|.......+. .++..++++||||+.+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccc
Confidence            345689999999999999999999743      100 0   0    01113556665544444 5667899999999754


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      +       ...+...    ...+|++++|+|+..+....++..+..+... +.    | +++++||+|....  ..+.+.
T Consensus       137 f-------~~~~~~g----~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~~  198 (447)
T PLN03127        137 Y-------VKNMITG----AAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLEL  198 (447)
T ss_pred             h-------HHHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHHH
Confidence            1       1222222    2357999999999877788887777776654 43    6 5788999998754  333333


Q ss_pred             hcccCCchHHHHHHHcCCc--eEEecCCCcccccch-------hHHHHHHHHHHHHHh
Q 022188          161 LGHECPKPLKEILQLCDNR--CVLFDNKTKDEAKGT-------EQVRQLLSLVNSVIV  209 (301)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~L~~~l~~~~~  209 (301)
                      +..    .++.++..++..  .+++-+....++..+       .++..|++.+...++
T Consensus       199 i~~----~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        199 VEM----ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHH----HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            321    145555544321  222211111122222       236788888877664

>PRK00007 elongation factor G; Reviewed

Probab=99.60  E-value=2.4e-14  Score=136.50  Aligned_cols=120  Identities=22%  Similarity=0.271  Sum_probs=85.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh---CCCCccccC-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ....++|+|+|+.++|||||+|+|+   |........             ...+.|.......+. |.+..++++||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCc
Confidence            3457899999999999999999996   322110000             122455555455444 78899999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .++       ..++...+.    .+|++++|+|+..+....+...+..+... +.    |+++++||+|....
T Consensus        86 ~~f-------~~ev~~al~----~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDF-------TIEVERSLR----VLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA  142 (693)
T ss_pred             HHH-------HHHHHHHHH----HcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            652       123444444    44999999999888888888888877654 43    88999999998755

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.60  E-value=1.3e-13  Score=113.38  Aligned_cols=163  Identities=16%  Similarity=0.094  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++..... .   ..+|...........++  ..+.+|||+|...           +....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~---y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPG-S---YVPTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-c---cCCccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence            579999999999999999999765422 1   11222211111111334  3678899999432           22223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc---C-CchHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLKE  171 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~---~-~~~l~~  171 (301)
                      ..+++++|++|+|+|++++-+-...  .+...+..... ..  |++||.||+|+.... ..+.......   . ...-..
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~--piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~  142 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NA--KVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV  142 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CC--CEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence            3457899999999999955433332  23333433322 23  999999999975431 1111110000   0 011233


Q ss_pred             HHHHcCC-ceEEecCCCcccccchh-HHHHHHHHHHHH
Q 022188          172 ILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSV  207 (301)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~  207 (301)
                      +....+. .++.      +||+++. ++.++|......
T Consensus       143 ~ak~~~~~~y~E------~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         143 LAKQVGAVSYVE------CSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             HHHHcCCCEEEE------cCCCcCCcCHHHHHHHHHHH
Confidence            4445554 5555      7888766 499999887664

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK12735 elongation factor Tu; Reviewed

Probab=99.60  E-value=5.7e-14  Score=125.71  Aligned_cols=164  Identities=18%  Similarity=0.222  Sum_probs=100.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK--------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      .+..+|+++|+.++|||||+++|++...      +.        ......+.|.......+. +++..+.++||||..+ 
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~~-   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHAD-   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHHH-
Confidence            3458999999999999999999996211      00        000123455554443333 4667899999999532 


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                                +...+......+|++++|+|+..+......+.+..+.. .+.    | +++++||+|+...  ....+.+
T Consensus        88 ----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~  150 (396)
T PRK12735         88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV  150 (396)
T ss_pred             ----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHH
Confidence                      33333334557799999999986677777776666553 343    5 4468999998643  2222222


Q ss_pred             cccCCchHHHHHHHcCC-----ceEEecCCCcccccch----------hHHHHHHHHHHHHHh
Q 022188          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV  209 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~L~~~l~~~~~  209 (301)
                      ..    .+..++..++.     ++++      .|+..+          .++..|++.+...++
T Consensus       151 ~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        151 EM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            21    15555655442     2233      333333          356788888877654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.60  E-value=2.3e-13  Score=127.00  Aligned_cols=154  Identities=18%  Similarity=0.191  Sum_probs=97.4

Q ss_pred             cCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCcc
Q 022188           26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH  105 (301)
Q Consensus        26 G~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
                      |.+|+|||||+|+++|... ..+ ...+.|......... +++..+.+|||||.++......+  +.+.... .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence            8999999999999999875 222 233455544443333 57778999999999875432211  1222211 1134679


Q ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecC
Q 022188          106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN  185 (301)
Q Consensus       106 ~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (301)
                      ++++|+|++ .+... ......+.+   .+  .|+++++||+|..+.  ..+...        .+.+....+.++++   
T Consensus        75 vvI~VvDat-~ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pvv~---  134 (591)
T TIGR00437        75 LVVNVVDAS-NLERN-LYLTLQLLE---LG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPVVP---  134 (591)
T ss_pred             EEEEEecCC-cchhh-HHHHHHHHh---cC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCEEE---
Confidence            999999998 33322 222222222   12  299999999997643  112111        23444555666666   


Q ss_pred             CCcccccchhHHHHHHHHHHHHH
Q 022188          186 KTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       186 ~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                         .|++++.|++++++.+.+..
T Consensus       135 ---tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       135 ---TSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             ---EECCCCCCHHHHHHHHHHHh
Confidence               78889999999999997764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.60  E-value=2.4e-14  Score=133.50  Aligned_cols=162  Identities=19%  Similarity=0.231  Sum_probs=100.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc------cccC-------CCCCcceeeEeEEEEee--CC--eeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF------KASA-------GSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~------~~~~-------~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~~   81 (301)
                      .++|+|+|+.|+|||||+++|+.....      ....       ...+.|.......+.+.  ++  ..+.+|||||..+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            589999999999999999999864210      0100       01244554444333321  22  5789999999776


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                      +.       .++..+    +..+|++++|+|++++.+......+..+...   +.  |+++++||+|+...   ..+...
T Consensus        83 F~-------~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~~---~i--piIiViNKiDl~~~---~~~~~~  143 (595)
T TIGR01393        83 FS-------YEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALEN---DL--EIIPVINKIDLPSA---DPERVK  143 (595)
T ss_pred             HH-------HHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHHc---CC--CEEEEEECcCCCcc---CHHHHH
Confidence            31       233333    3456999999999977777665544433321   22  89999999997533   112111


Q ss_pred             cccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..     +...   ++...   ......||+++.|+++|++.+...++.
T Consensus       144 ~e-----l~~~---lg~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       144 KE-----IEEV---IGLDA---SEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             HH-----HHHH---hCCCc---ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            11     2222   22210   011237999999999999999887764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=9.6e-15  Score=127.68  Aligned_cols=178  Identities=13%  Similarity=0.099  Sum_probs=113.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+..|+|+|+||+|||||+|+|+....  +.+++.+.|++.........+|.+++|+||.|+....  ++.+...=+...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~--~~~iE~~gI~rA  342 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES--NDGIEALGIERA  342 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEecccccccc--CChhHHHhHHHH
Confidence            458899999999999999999999988  7777778888877766666999999999999998721  112222222222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHh---hCcc----ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKN----VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~---~~~~----~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                      ......+|++++|+|+....+.++....+.+...   +...    ..++++++.||.|....    +.++...     ..
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~----~~~~~~~-----~~  413 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK----IPEMTKI-----PV  413 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc----cccccCC-----ce
Confidence            3345677999999999544444554444444332   1111    12589999999997644    1111110     00


Q ss_pred             HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+....+...  |......++.++.++..|.+.+...+..
T Consensus       414 ~~~~~~~~~~--~~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  414 VYPSAEGRSV--FPIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             eccccccCcc--cceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            0111111111  1112236778889999999998876543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.59  E-value=2.5e-14  Score=133.59  Aligned_cols=161  Identities=18%  Similarity=0.217  Sum_probs=101.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c-----------CCCCCcceeeEeEEEEee----CCeeEEEEeCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--S-----------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGL   79 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~-----------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~   79 (301)
                      ...++|+|+|+.++|||||+.+|+.......  .           ....+.|.......+.+.    .+..+++|||||.
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3468999999999999999999975321000  0           001244444433333321    2467899999997


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~  159 (301)
                      .++.       .++..++    ..+|++++|+|++.+....+...+..+... +  .  |+++++||+|....   ..+.
T Consensus        85 ~dF~-------~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~~-~--l--piIvViNKiDl~~a---~~~~  145 (600)
T PRK05433         85 VDFS-------YEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALEN-D--L--EIIPVLNKIDLPAA---DPER  145 (600)
T ss_pred             HHHH-------HHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-C--C--CEEEEEECCCCCcc---cHHH
Confidence            7642       2333333    455999999999977777665555544332 2  2  89999999997543   1222


Q ss_pred             HhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          160 FLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....     +...   ++.   .++      ..|+.++.|+.+|++++...++.
T Consensus       146 v~~e-----i~~~---lg~~~~~vi------~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        146 VKQE-----IEDV---IGIDASDAV------LVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHH-----HHHH---hCCCcceEE------EEecCCCCCHHHHHHHHHHhCcc
Confidence            1121     2222   222   133      37889999999999999887764

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.59  E-value=2.2e-14  Score=118.97  Aligned_cols=161  Identities=20%  Similarity=0.206  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      .|++||.||||||||+|+|+....  ........|.........+.+...+++-|.||+......+.-++..+.+.+..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            589999999999999999998775  222223344444444444344556999999999987766766777788877666


Q ss_pred             CCCccEEEEEEecCCCC--CHHH-HH-HHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188          101 KDGIHAFLVVFSVTNRF--SQEE-ET-AVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~--~~~~-~~-~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                          +.++||+|++...  ++-+ .. .+..+. .+... ..+|.++|.||+|..+.    -.++        +..+...
T Consensus       276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe-~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~~  338 (366)
T KOG1489|consen  276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELE-LYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAKR  338 (366)
T ss_pred             ----ceEEEEEECCCcccCCHHHHHHHHHHHHH-HHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHHH
Confidence                9999999999331  2222 22 222222 22222 34589999999997433    1111        2344444


Q ss_pred             cCCc-eEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .... +++      .||+.+.++.+|+..+..
T Consensus       339 lq~~~V~p------vsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  339 LQNPHVVP------VSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             cCCCcEEE------eeeccccchHHHHHHHhh
Confidence            4444 455      788888899998887654

>PRK12739 elongation factor G; Reviewed

Probab=99.59  E-value=6.5e-14  Score=133.63  Aligned_cols=119  Identities=24%  Similarity=0.323  Sum_probs=84.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--cc-C-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--AS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (301)
                      ...++|+|+|+.++|||||+++|+...-..  .+ .             ...+.|.......+. |++..+++|||||+.
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence            456899999999999999999997421100  00 0             123455555555544 788999999999975


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ++       ..+...++.    .+|++++|+|+..+....+...+..+... +.    |+++++||+|....
T Consensus        85 ~f-------~~e~~~al~----~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DF-------TIEVERSLR----VLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA  140 (691)
T ss_pred             HH-------HHHHHHHHH----HhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence            52       223444443    45999999999888888888777776553 33    89999999998754

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.8e-13  Score=105.77  Aligned_cols=159  Identities=18%  Similarity=0.196  Sum_probs=105.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ..+|+++|..++||||||++.+-...    ..+...|.-...  ..+. ..+  ..+.+|||.|           .+.+.
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~-l~d~~vrLQlWDTAG-----------QERFr   85 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAG-----------QERFR   85 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEE-EcCcEEEEEEEeccc-----------HHHHh
Confidence            47899999999999999999984443    222233332222  2222 333  4679999999           23445


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ..+..+++++.++|+|.|.+++-+-+. ..|++-+..--|.+ +  -+++|.||.|+.+.  ..+...-.       ...
T Consensus        86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk--rqvs~eEg-------~~k  154 (221)
T KOG0094|consen   86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK--RQVSIEEG-------ERK  154 (221)
T ss_pred             hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch--hhhhHHHH-------HHH
Confidence            555667899999999999996666655 45666555544442 3  57788999998866  22221111       123


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+.-+..      .|++.+.++..|+..|...++.
T Consensus       155 Akel~a~f~e------tsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  155 AKELNAEFIE------TSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             HHHhCcEEEE------ecccCCCCHHHHHHHHHHhccC
Confidence            3444554444      7889999999999999888765

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.57  E-value=5.9e-14  Score=110.20  Aligned_cols=157  Identities=20%  Similarity=0.257  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+++|+.|+|||||++++.+...........+  ......... .++.  .+.+||+||....        ..+.   .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~l~i~D~~g~~~~--------~~~~---~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVS-IDGKPVNLEIWDTSGQERF--------DSLR---D   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEE-ETTEEEEEEEEEETTSGGG--------HHHH---H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccc--ccccccccc-ccccccccccccccccccc--------cccc---c
Confidence            589999999999999999997664222211111  122222222 3333  6899999995431        1111   2


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+..+|++++|+|.+++-+-.. ..++..+....+.+.  |++++.||.|.........++         ...+....+
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~  135 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDEREVSVEE---------AQEFAKELG  135 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--cceeeeccccccccccchhhH---------HHHHHHHhC
Confidence            23567799999999984433333 356666666655333  999999999976431011111         345666667


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..++.      +|++++.++.+++..+.+.+
T Consensus       136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  136 VPYFE------VSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred             CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence            66776      77888899999988876543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.57  E-value=3.2e-13  Score=109.44  Aligned_cols=151  Identities=15%  Similarity=0.117  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe----eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +|+++|.+|+|||||++.+++...........+.+.......+..    .....+.+|||+|...           +...
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~~l   70 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VKST   70 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HHHH
Confidence            699999999999999999998765332221112112111111110    0124689999999543           2223


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-----------------ccccCeEEEEEeCCCCCCCccccHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDHEKTLE  158 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~nk~D~~~~~~~~~~  158 (301)
                      ...+++++|++|+|+|++++-+-.. ..|+..+....+                 .....|++||.||.|+.......-+
T Consensus        71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~  150 (202)
T cd04102          71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN  150 (202)
T ss_pred             HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence            3345788999999999996655544 345555543210                 0112399999999997543001111


Q ss_pred             HHhcccCCchHHHHHHHcCCceEEecCCC
Q 022188          159 DFLGHECPKPLKEILQLCDNRCVLFDNKT  187 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (301)
                      ..+..     ...+...++...+..+...
T Consensus       151 ~~~~~-----~~~ia~~~~~~~i~~~c~~  174 (202)
T cd04102         151 LVLTA-----RGFVAEQGNAEEINLNCTN  174 (202)
T ss_pred             HHhhH-----hhhHHHhcCCceEEEecCC
Confidence            11111     3455677888777766553

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.57  E-value=2e-13  Score=112.46  Aligned_cols=158  Identities=15%  Similarity=0.046  Sum_probs=92.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEE--EE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ...+|+++|++|+|||||++.++........    ..|.......  +. ......+.+|||||....           .
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~   72 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-----------G   72 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence            4489999999999999999755433321111    1122211111  11 123357789999995432           1


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .....++...+++++|+|.+++.+-.. ..++..+..... ..  |++++.||+|....  ....+         ...+.
T Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~--~i~lv~nK~Dl~~~--~~~~~---------~~~~~  138 (215)
T PTZ00132         73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NI--PIVLVGNKVDVKDR--QVKAR---------QITFH  138 (215)
T ss_pred             hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccCccc--cCCHH---------HHHHH
Confidence            111223456799999999985544433 334444444332 23  89999999997533  11111         11233


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      .|++++.++++++.++.+.+..
T Consensus       139 ~~~~~~~~e------~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        139 RKKNLQYYD------ISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence            333444444      7888889999999988877654

>PRK10218 GTP-binding protein; Provisional

Probab=99.57  E-value=1.1e-13  Score=128.69  Aligned_cols=118  Identities=18%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      ..++|+|+|+.++|||||+++|+.... +...             ....+.|.......+. +++..+.+|||||..++.
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence            458999999999999999999996321 1111             0123445444444444 678899999999987742


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .       ++..+    +..+|++++|+|+..+.....+..+..+... +.    |.++++||+|....
T Consensus        83 ~-------~v~~~----l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a  135 (607)
T PRK10218         83 G-------EVERV----MSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA  135 (607)
T ss_pred             H-------HHHHH----HHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC
Confidence            1       23333    3566999999999877777777776665543 33    88999999997643

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.57  E-value=1.4e-13  Score=123.33  Aligned_cols=121  Identities=17%  Similarity=0.252  Sum_probs=80.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC------Ccc----cc----CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFK----AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~------~~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..+.++|+++|+.++|||||+++|++..      .+.    ..    ....+.|.......+. .++..+.+|||||..+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence            4456899999999999999999998431      100    00    0113455555444333 4567899999999644


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +       ...+..    ....+|++++|+|+..+....+.+.+..+... +.+   ++++++||+|+...
T Consensus        88 f-------~~~~~~----~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        88 Y-------VKNMIT----GAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD  143 (394)
T ss_pred             H-------HHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence            1       122222    23467999999999876777777777776543 442   45578999998754

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=6e-14  Score=131.37  Aligned_cols=212  Identities=22%  Similarity=0.274  Sum_probs=136.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--------------------CCcceeeEeEEEEeeCC-eeEEEEe
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------------SGVTKTCEMKTTVLKDG-QVVNVID   75 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~-~~~~liD   75 (301)
                      ...++|+|+||..+|||||..+|+    +.++...                    .+.|......+.. |.+ ..+++||
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL----~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlID   82 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERIL----FYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLID   82 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHH----HHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeC
Confidence            356899999999999999999987    2222111                    1666776666666 775 9999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188           76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK  155 (301)
Q Consensus        76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~  155 (301)
                      |||.-|+..       ++.+++...    |++++|+|+..+...+....|+.+...   .+  |.++++||+|....   
T Consensus        83 TPGHVDFt~-------EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a---  143 (697)
T COG0480          83 TPGHVDFTI-------EVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA---  143 (697)
T ss_pred             CCCccccHH-------HHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc---
Confidence            999999743       677777666    999999999989988888888877664   34  99999999998876   


Q ss_pred             cHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC-CCC-----CchHHHHHHHHHHH
Q 022188          156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG-GQP-----YTDELKRGATELRD  229 (301)
Q Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~  229 (301)
                              ++......+...++....+++......    ..+...+..+........ +..     .+.+......++  
T Consensus       144 --------~~~~~~~~l~~~l~~~~~~v~~pIg~~----~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~--  209 (697)
T COG0480         144 --------DFYLVVEQLKERLGANPVPVQLPIGAE----EEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEA--  209 (697)
T ss_pred             --------ChhhhHHHHHHHhCCCceeeeccccCc----cccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHH--
Confidence                    333335666677777666665543321    111112222221111111 111     223444444443  


Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188          230 KKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEM  266 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (301)
                      +...++.+.+..++.++.+.+..+...++..+.++..
T Consensus       210 r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~  246 (697)
T COG0480         210 REKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG  246 (697)
T ss_pred             HHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence            4444555666666777777776655544444444443

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.57  E-value=1.1e-13  Score=108.31  Aligned_cols=152  Identities=18%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||++.++...... ...+....   ....+. .++  ..+.+|||+|...         ..     
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~~~~~---~~~~i~-~~~~~~~l~i~D~~g~~~---------~~-----   61 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-LESPEGGR---FKKEVL-VDGQSHLLLIRDEGGAPD---------AQ-----   61 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCccc---eEEEEE-ECCEEEEEEEEECCCCCc---------hh-----
Confidence            369999999999999999877554321 11111111   111222 455  3578999999643         01     


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                        ++..+|++++|+|.+++-+-.. ..++..+...... ...|++++.||.|+...+...+....       ...+....
T Consensus        62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~  131 (158)
T cd04103          62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM  131 (158)
T ss_pred             --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence              1345699999999996655555 4455666554321 12399999999986421101111110       12233332


Q ss_pred             C-CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      + ..++.      +||+++.++++++..+.+
T Consensus       132 ~~~~~~e------~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         132 KRCSYYE------TCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             CCCcEEE------EecCCCCCHHHHHHHHHh
Confidence            2 34444      899999999999998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.57  E-value=6.7e-14  Score=107.81  Aligned_cols=154  Identities=19%  Similarity=0.136  Sum_probs=87.7

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (301)
Q Consensus        24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
                      |+|++|+|||||+|++.+.........+........... ....+..+.+||+||.....           .......+.
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~l~D~~g~~~~~-----------~~~~~~~~~   68 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIE-VDGKKVKLQIWDTAGQERFR-----------SLRRLYYRG   68 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEE-ECCEEEEEEEEecCChHHHH-----------hHHHHHhcC
Confidence            589999999999999998776322211111111111111 00125678999999966521           111223567


Q ss_pred             ccEEEEEEecCCCCCHHHHHHH--HHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          104 IHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      +|++++|+|++.+.+......+  ..+....  ....|+++++||+|....  ....... .     ...........++
T Consensus        69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~~~~  138 (157)
T cd00882          69 ADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGVPYF  138 (157)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCCcEE
Confidence            7999999999854444433322  1122111  223499999999998655  2222111 0     1122233344555


Q ss_pred             EecCCCcccccchhHHHHHHHHHH
Q 022188          182 LFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      .      .|+..+.++.++++++.
T Consensus       139 ~------~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         139 E------TSAKTGENVEELFEELA  156 (157)
T ss_pred             E------EecCCCCChHHHHHHHh
Confidence            5      66667788999988864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.57  E-value=2.5e-14  Score=107.46  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|++|+|||||+++|.|.....      ..|...     . +.+   .+|||||-+-..       ..+...+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i-----~-~~~---~~IDTPGEyiE~-------~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAI-----E-YYD---NTIDTPGEYIEN-------PRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc------Ccccee-----E-ecc---cEEECChhheeC-------HHHHHHHHH
Confidence            589999999999999999999866411      112111     1 111   469999965421       245555555


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +...+|+++++.|++.+.+.---.    +...|..    |+|=|+||+|....+ ..++.         .+..+...|..
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~~----pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~  121 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPG----FASMFNK----PVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK  121 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCch----hhcccCC----CEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence            667889999999998433221111    2223433    999999999987321 22222         23445555543


Q ss_pred             -eEEecCCCcccccchhHHHHHHHHHH
Q 022188          180 -CVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                       ++.      .|+.++.|+++|.++|.
T Consensus       122 ~if~------vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  122 EIFE------VSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CeEE------EECCCCcCHHHHHHHHh
Confidence             333      67778899999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.56  E-value=3.2e-14  Score=129.62  Aligned_cols=160  Identities=13%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC-----------------CCCcceeeEeE
Q 022188           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEMK   61 (301)
Q Consensus        13 ~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~~   61 (301)
                      .+......+|+++|+.++|||||+++|+...-...              +..                 ..+.|......
T Consensus        21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~  100 (474)
T PRK05124         21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR  100 (474)
T ss_pred             hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence            33345668999999999999999999985432111              100                 11344555444


Q ss_pred             EEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEE
Q 022188           62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        62 ~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      .+. +++..+.+|||||..+       ....+...    ...+|++++|+|+..++...++..+..+.. ++.   .|++
T Consensus       101 ~~~-~~~~~i~~iDTPGh~~-------f~~~~~~~----l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iI  164 (474)
T PRK05124        101 YFS-TEKRKFIIADTPGHEQ-------YTRNMATG----ASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLV  164 (474)
T ss_pred             Eec-cCCcEEEEEECCCcHH-------HHHHHHHH----HhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceE
Confidence            443 6678899999999433       12222222    357799999999986666655554444433 343   2789


Q ss_pred             EEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC----CceEEecCCCcccccchhHHHH
Q 022188          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD----NRCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      +++||+|....+...+.+....     +..++..++    ..+++      .|+.++.++..
T Consensus       165 vvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~iip------vSA~~g~ni~~  215 (474)
T PRK05124        165 VAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPGNLDIRFVP------LSALEGDNVVS  215 (474)
T ss_pred             EEEEeeccccchhHHHHHHHHH-----HHHHHHhcCCCCCceEEE------EEeecCCCccc
Confidence            9999999874321223333333     444444433    23343      66666666654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.56  E-value=6.1e-14  Score=125.89  Aligned_cols=164  Identities=14%  Similarity=0.182  Sum_probs=97.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEE--------------Ee-----------eCCeeE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT--------------VL-----------KDGQVV   71 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~--------------~~-----------~~~~~~   71 (301)
                      +..+|+++|+.++|||||+++|++....... ....+.|.......+              ..           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            3478999999999999999999875321100 001122222211100              00           014578


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ++|||||..+       ....+...    ...+|++++|+|++.+. .....+.+..+. .++..   |+++++||+|+.
T Consensus        83 ~liDtPGh~~-------f~~~~~~g----~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi~---~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHET-------LMATMLSG----AALMDGALLVIAANEPCPQPQTKEHLMALE-IIGIK---NIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHHH-------HHHHHHHH----HHHCCEEEEEEECCCCccccchHHHHHHHH-HcCCC---eEEEEEEccccC
Confidence            9999999533       12223222    34569999999998655 455555555543 34432   799999999987


Q ss_pred             CCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          151 EDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..  ....+....     +..++...   +..++      +.|+.++.+++.|+++|...++
T Consensus       148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii------~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       148 SK--EKALENYEE-----IKEFVKGTVAENAPII------PVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CH--HHHHHHHHH-----HHhhhhhcccCCCeEE------EEECCCCCChHHHHHHHHHhCC
Confidence            54  222222222     23333221   12233      3788889999999999998665

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04129 Rho2 Rho2 subfamily

Probab=99.56  E-value=1.3e-13  Score=110.95  Aligned_cols=165  Identities=17%  Similarity=0.109  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|++|+|||||++++.........    ..|...........++  ..+.+|||||.......           .
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----------~   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL-----------R   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEECCEEEEEEEEECCCChhcccc-----------c
Confidence            57999999999999999999854432111    1122211111111233  35689999996543211           0


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC--chHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP--KPLKEIL  173 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~--~~l~~~~  173 (301)
                      ...+..+|+++++++.+++-+...  ..++..+....+ +  .|+++|.||+|+.... ...++......-  .....+.
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  142 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA  142 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence            113467799999999984333333  235566655433 2  3999999999974321 111110000000  0122333


Q ss_pred             HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+. .++.      +|++++.+++++++.+.+.+.
T Consensus       143 ~~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         143 KEIGAKKYME------CSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             HHhCCcEEEE------ccCCCCCCHHHHHHHHHHHHh
Confidence            44443 3444      789999999999999986654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.56  E-value=2.5e-14  Score=117.97  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeeEeEEEEeeCCeeE
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFK-----------------------------ASAGSSGVTKTCEMKTTVLKDGQVV   71 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~   71 (301)
                      +|+++|+.|+|||||+.+|+...-..                             ......+.|.......+. +.+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence            48999999999999999996321100                             000112444444444444 688899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      .+|||||..++       ...+..    ....+|++++|+|+..+       ........+..+. .++.   .|+++++
T Consensus        80 ~liDtpG~~~~-------~~~~~~----~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-------VPNMIT----GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-------HHHHHH----HhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence            99999995431       122222    23567999999999852       2233344444333 3342   2899999


Q ss_pred             eCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHH
Q 022188          145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVR  198 (301)
Q Consensus       145 nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  198 (301)
                      ||+|+...  +...+++....     +..++...+.     ++++      +||.++.|+.
T Consensus       145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~  194 (219)
T cd01883         145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI  194 (219)
T ss_pred             EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence            99998732  11234444443     5555555432     2444      5666666655

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.56  E-value=1.1e-13  Score=128.41  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-----------------CCeeEEEEeCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL   82 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~   82 (301)
                      +.|+|+|++|+|||||+|+|.+..+....  +.+.|.+.....+...                 ....+.+|||||...+
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            57999999999999999999987653221  1222222111111100                 0124889999995442


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                                 .......+..+|++++|+|++++....+...+..+... +  .  |+++++||+|...
T Consensus        83 -----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~--v--piIVv~NK~Dl~~  135 (590)
T TIGR00491        83 -----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K--T--PFVVAANKIDRIP  135 (590)
T ss_pred             -----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C--C--CEEEEEECCCccc
Confidence                       11122234677999999999877777777666666543 3  2  8999999999863

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.55  E-value=1.7e-13  Score=124.08  Aligned_cols=156  Identities=18%  Similarity=0.215  Sum_probs=93.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (301)
                      .+.++|+++|+.++|||||+++|+......              .+               ....+.|.......+. ++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~   83 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TD   83 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cC
Confidence            345899999999999999999998422100              00               0012455555544443 66


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      +..+.+|||||..+           +...+...+..+|++++|+|++++   ........+..+ ..++.   .|+++++
T Consensus        84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi  148 (426)
T TIGR00483        84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI  148 (426)
T ss_pred             CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence            78899999999432           222233335678999999999855   333333333333 33343   2799999


Q ss_pred             eCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ||+|+...+...++....+     +..++...+.     .+++      +|+.++.++.+
T Consensus       149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~~~~i~------iSA~~g~ni~~  197 (426)
T TIGR00483       149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDTVPFIP------ISAWNGDNVIK  197 (426)
T ss_pred             EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------eeccccccccc
Confidence            9999864311233333333     5556655542     2333      67777777765

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.55  E-value=2.7e-13  Score=121.31  Aligned_cols=168  Identities=18%  Similarity=0.194  Sum_probs=102.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      +..+|+++|+.++|||||+++|++...-..              .....+.|.......+. +++..+.++||||+.+  
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~--   87 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHAD--   87 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHHH--
Confidence            458999999999999999999997321000              00123445554443333 4677899999999532  


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEE-EEEeCCCCCCCccccHHHHh-
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTLEDFL-  161 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~nk~D~~~~~~~~~~~~~-  161 (301)
                               +...+......+|++++|+|+..+....+...+..+... +.    |.+ +++||+|....  ....+.+ 
T Consensus        88 ---------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~~  151 (396)
T PRK00049         88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELVE  151 (396)
T ss_pred             ---------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHHH
Confidence                     333333445678999999999877788887777776653 43    665 68999998643  2222222 


Q ss_pred             cccCCchHHHHHHHcCC-----ceEEecCCCcc----cccchhHHHHHHHHHHHHHh
Q 022188          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKD----EAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+     +..++..++.     ++++.+.....    ......++..|++.|...++
T Consensus       152 ~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        152 ME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            22     5556655442     33443322110    00111246678888877553

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.55  E-value=1.5e-13  Score=123.30  Aligned_cols=164  Identities=13%  Similarity=0.171  Sum_probs=98.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEeEEEEe--------------e------C-----CeeE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVL--------------K------D-----GQVV   71 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~--------------~------~-----~~~~   71 (301)
                      +..+|+++|+.|+|||||+.+|++...... .....+.|..........              .      +     ...+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            458999999999999999999987421000 011123333322111000              0      0     2578


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ++|||||..+           +...+......+|++++|+|+..+. .......+..+.. .+..   |+++++||+|+.
T Consensus        88 ~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~---~iiVVlNK~Dl~  152 (411)
T PRK04000         88 SFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIK---NIVIVQNKIDLV  152 (411)
T ss_pred             EEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEEeeccc
Confidence            9999999432           2222222234569999999999655 5555556655543 3332   789999999987


Q ss_pred             CCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          151 EDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..  .........     +..++...   ..++++      .|++++.+++.|++.|...++
T Consensus       153 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        153 SK--ERALENYEQ-----IKEFVKGTVAENAPIIP------VSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             cc--hhHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCcCHHHHHHHHHHhCC
Confidence            54  222222222     33333221   123333      788899999999999988664

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.55  E-value=3.8e-13  Score=100.90  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|.++|..||||||+++.+.|.++  .   ...+|...+..... .++..+.+||.-|-           ..+..++
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~-~~~~~L~iwDvGGq-----------~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLE-YKGYTLNIWDVGGQ-----------KTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEE-ecceEEEEEEcCCc-----------chhHHHH
Confidence            458999999999999999999999884  2   23445555555544 78899999999983           2466677


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ..++...|++|+|+|.+++..-.+  ....|++.+...  +-.|++++.||.|...+  -..++.-.. ..  +..+...
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~-~~--L~~l~ks  150 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA-LD--LEELAKS  150 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh-hC--HHHhccc
Confidence            777888899999999985544443  122233322211  22389999999997644  222222211 11  6667677


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +..+++.      +++.++.++.+-++|+..-+
T Consensus       151 ~~~~l~~------cs~~tge~l~~gidWL~~~l  177 (185)
T KOG0073|consen  151 HHWRLVK------CSAVTGEDLLEGIDWLCDDL  177 (185)
T ss_pred             cCceEEE------EeccccccHHHHHHHHHHHH
Confidence            7777776      67777766666666665443

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.55  E-value=5.9e-14  Score=125.90  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeeEeEEEEeeCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~~~~   68 (301)
                      .+|+++|+.++|||||+++|+...-...              +.                 ...+.|.......+. +++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence            4799999999999999999974321100              00                 011344554444443 677


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..+.+|||||..+       ....+..    ....+|++++|+|+..++...+++.+..+.. ++..   ++++++||+|
T Consensus        80 ~~~~liDtPGh~~-------f~~~~~~----~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~~---~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-------YTRNMAT----GASTADLAVLLVDARKGVLEQTRRHSYIASL-LGIR---HVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-------HHHHHHH----HHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCCC---cEEEEEEecc
Confidence            8999999999543       1222332    3456799999999987777766666555544 3432   6899999999


Q ss_pred             CCCCccccHHHHhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHHH
Q 022188          149 DLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ....+...+++....     +..++...+.   ++++      .|+.++.++.+
T Consensus       145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~iip------iSA~~g~ni~~  187 (406)
T TIGR02034       145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDVTFIP------LSALKGDNVVS  187 (406)
T ss_pred             cccchHHHHHHHHHH-----HHHHHHHcCCCCccEEE------eecccCCCCcc
Confidence            864321223332332     4445554443   2444      56666666553

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=4.1e-13  Score=102.95  Aligned_cols=161  Identities=16%  Similarity=0.103  Sum_probs=101.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+++++|.+|+|||.|+...+.+...+.-..+.+..--.....+. .....+.+|||.|...           +.....
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe~-----------frsv~~   73 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQES-----------FRSVTR   73 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcHH-----------HHHHHH
Confidence            3789999999999999999999877533322222221111111111 2334779999999333           444555


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+|+++.++|+|.|++.+-+-.. ..||.-+++....+.  -++++.||+|+...  ..+...-       -..+.+..|
T Consensus        74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~EE-------GeaFA~ehg  142 (216)
T KOG0098|consen   74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSKEE-------GEAFAREHG  142 (216)
T ss_pred             HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccHHH-------HHHHHHHcC
Confidence            67899999999999994444433 456666666643333  68888999998654  2222110       223344444


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.      ..||+++.++++.+.-....+
T Consensus       143 Lifm------ETSakt~~~VEEaF~nta~~I  167 (216)
T KOG0098|consen  143 LIFM------ETSAKTAENVEEAFINTAKEI  167 (216)
T ss_pred             ceee------hhhhhhhhhHHHHHHHHHHHH
Confidence            3333      489999999999887765443

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4e-13  Score=99.03  Aligned_cols=157  Identities=18%  Similarity=0.217  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|..|+|||.|++..+....++......++.  .-...+. .++.  .+.+|||.|-           +.+....
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvd--fmiktve-v~gekiklqiwdtagq-----------erfrsit   73 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVD--FMIKTVE-VNGEKIKLQIWDTAGQ-----------ERFRSIT   73 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeee--EEEEEEE-ECCeEEEEEEeeccch-----------HHHHHHH
Confidence            689999999999999999998655433322222221  1122222 3443  6799999992           2333344


Q ss_pred             hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+|+.+|++++|.|++ .+--.--..|+..+.+.....+  -.++|.||+|+.+.  .++.+.+.+++        ...
T Consensus        74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qigeef--------s~~  141 (213)
T KOG0095|consen   74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGEEF--------SEA  141 (213)
T ss_pred             HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHHHH--------HHh
Confidence            45678999999999998 3333444678888888766554  56789999998755  44444333211        111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+-|+.     ..|++...+++.|+..+...
T Consensus       142 qdmyfl-----etsakea~nve~lf~~~a~r  167 (213)
T KOG0095|consen  142 QDMYFL-----ETSAKEADNVEKLFLDLACR  167 (213)
T ss_pred             hhhhhh-----hhcccchhhHHHHHHHHHHH
Confidence            222222     36777788999998877644

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.53  E-value=4.5e-13  Score=108.36  Aligned_cols=161  Identities=15%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHH-HHhCCCCcccc--CCCCCccee--eEeE-E-------EEeeCC--eeEEEEeCCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T-------TVLKDG--QVVNVIDTPGLFDLSA   84 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin-~l~g~~~~~~~--~~~~~~t~~--~~~~-~-------~~~~~~--~~~~liDtPG~~~~~~   84 (301)
                      .+|+++|..|+|||||+. .+.+... ..+  .....+|..  .... .       ....++  ..+.+|||+|....  
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            689999999999999996 5544321 111  111122321  0000 0       001233  46799999995431  


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH-----
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-----  157 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-----  157 (301)
                              +   ...+++++|++++|+|++++.+-...  .++..+..... +.  |+++|.||+|+........     
T Consensus        80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RV--PVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CC--CEEEEEEchhccccccchhhhccc
Confidence                    1   12357899999999999866555543  35566665432 23  9999999999753200000     


Q ss_pred             --------HHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          158 --------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       158 --------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                              ...+   .......+....+..++.      +||+++.+++++++.+.+
T Consensus       146 ~~~~~~~~~~~V---~~~e~~~~a~~~~~~~~E------~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         146 PLARPIKNADIL---PPETGRAVAKELGIPYYE------TSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccccccCCcc---CHHHHHHHHHHhCCEEEE------cCCCCCCCHHHHHHHHHH
Confidence                    0000   001134455555666665      899999999999988754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.53  E-value=4.8e-14  Score=111.54  Aligned_cols=115  Identities=16%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-eeeEe----------------------------------------
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEM----------------------------------------   60 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t-~~~~~----------------------------------------   60 (301)
                      |+|+|..++|||||+|+|+|...++++..+.... +....                                        
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            7999999999999999999998777654422110 00000                                        


Q ss_pred             ------------EEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH
Q 022188           61 ------------KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL  128 (301)
Q Consensus        61 ------------~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l  128 (301)
                                  ..........+.||||||+.+.......+   +.++    .+.+|++|+|+++...++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~---~~~~----~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI---TEEY----LPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH---HHHH----HSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHH---HHHh----hccCCEEEEEeccCcccchHHHHHHHHH
Confidence                        00011123568999999998744333222   2222    3566999999999966776666655554


Q ss_pred             HHhhCccccCeEEEEEeCC
Q 022188          129 PNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus       129 ~~~~~~~~~~~~ilv~nk~  147 (301)
                      ......    .+++|+||+
T Consensus       154 ~~~~~~----~~i~V~nk~  168 (168)
T PF00350_consen  154 LDPDKS----RTIFVLNKA  168 (168)
T ss_dssp             HTTTCS----SEEEEEE-G
T ss_pred             hcCCCC----eEEEEEcCC
Confidence            443332    588999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.4e-13  Score=114.84  Aligned_cols=155  Identities=21%  Similarity=0.305  Sum_probs=107.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc----
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS----   86 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~----   86 (301)
                      .+++.++|.+|.|||||+|+|++......     .......|.......... .+|  ..++|+|||||+|.....    
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            47999999999999999999998754221     111122233333333222 223  367999999999865432    


Q ss_pred             ---HHHHHHHHHHHhc-------c--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           87 ---EFVGKEIVKCLGM-------A--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        87 ---~~~~~~~~~~~~~-------~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                         ..+..++..++..       .  ..++|++||.+... +++.+-+...++.+...    +  ++|-|+.|.|.+.. 
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~lT~-  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTLTK-  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccCCH-
Confidence               2344445555432       1  23789999999887 66999998887777653    3  78999999999988 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK  186 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (301)
                       ..+..+...     +...+.....+++.|+..
T Consensus       174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence             777777776     777888778777776654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.53  E-value=4e-13  Score=100.34  Aligned_cols=163  Identities=15%  Similarity=0.070  Sum_probs=96.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+|+|.+|+|||||+-+.+...+-+..+...+..-+.....+. .....+.+|||.|..           .+.....
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGqE-----------rFRtLTp   78 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQE-----------RFRTLTP   78 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccchH-----------hhhccCH
Confidence            3799999999999999999998655422222223333222222211 233478999999922           3333445


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+|+++.++|+|.|++.|-+-... .|++.+.....++ .--.++|.||+|....--...++         =..+..+.+
T Consensus        79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reE---------G~kfAr~h~  148 (209)
T KOG0080|consen   79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREE---------GLKFARKHR  148 (209)
T ss_pred             hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHH---------HHHHHHhhC
Confidence            578999999999999954444333 3445554443332 11356889999965320011111         112333333


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .-.+.      .||+...+++..++.+...+.
T Consensus       149 ~LFiE------~SAkt~~~V~~~FeelveKIi  174 (209)
T KOG0080|consen  149 CLFIE------CSAKTRENVQCCFEELVEKII  174 (209)
T ss_pred             cEEEE------cchhhhccHHHHHHHHHHHHh
Confidence            33333      788888888887776655443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.52  E-value=5.2e-13  Score=124.34  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee----------C-------CeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~liDtPG~~~   81 (301)
                      .+.|+|+|++|+|||||+|+|.+.......  ..+.|.+.........          .       -..+++|||||..+
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            467999999999999999999987542221  1222222211111000          0       01278999999655


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      +.           ......+..+|++++|+|+++++.......+..+... +  .  |+++++||+|..
T Consensus        84 f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~--v--piIvviNK~D~~  136 (586)
T PRK04004         84 FT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K--T--PFVVAANKIDRI  136 (586)
T ss_pred             HH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C--C--CEEEEEECcCCc
Confidence            31           1111234567999999999977777777777666542 3  2  899999999975

>cd04167 Snu114p Snu114p subfamily

Probab=99.52  E-value=8.5e-14  Score=114.42  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeeEeEEEEe----eCCeeEEEEeCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG   78 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG   78 (301)
                      ++|+|+|+.|+|||||+++|++.......                 ....+.+.......+..    .....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            46999999999999999999865432110                 00012222222222211    1235789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ..++.       ......    +..+|++++|+|+....+......++.+... +    .|+++++||+|..
T Consensus        81 ~~~f~-------~~~~~~----~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFM-------DEVAAA----LRLSDGVVLVVDVVEGVTSNTERLIRHAILE-G----LPIVLVINKIDRL  136 (213)
T ss_pred             CcchH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence            77631       122233    3456999999999866665555544444321 2    3899999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK13351 elongation factor G; Reviewed

Probab=99.52  E-value=1.2e-13  Score=132.12  Aligned_cols=118  Identities=20%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--c-----cC---------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--A-----SA---------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~--~-----~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..++|+|+|+.|+|||||+++|+...-..  .     +.         ...+.|.......+. +.+..+.+|||||..+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d   85 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID   85 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence            46899999999999999999997432100  0     00         012344444444444 7888999999999765


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +.       .+...+    +..+|++++|+|++.+........+..+... +.    |+++++||+|....
T Consensus        86 f~-------~~~~~~----l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~~----p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FT-------GEVERS----LRVLDGAVVVFDAVTGVQPQTETVWRQADRY-GI----PRLIFINKMDRVGA  140 (687)
T ss_pred             HH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEECCCCCCC
Confidence            31       223333    3455999999999877777776666665443 32    89999999997754

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.52  E-value=1.2e-13  Score=115.21  Aligned_cols=164  Identities=20%  Similarity=0.248  Sum_probs=107.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +..-+++++|+|++|||||+|.|++...   .....+.|+-..+.....+++-.++++|+||+........-.+.++.. 
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls-  136 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS-  136 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeee-
Confidence            3447999999999999999999998653   444556666666666666899999999999987754433222333333 


Q ss_pred             HhccCCCccEEEEEEecCC------------------------------------------CCCHHHHHHHHHHHH----
Q 022188           97 LGMAKDGIHAFLVVFSVTN------------------------------------------RFSQEEETAVHRLPN----  130 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~------------------------------------------~~~~~~~~~l~~l~~----  130 (301)
                         ..+.+|++++|+|+..                                          +++..+...++.+..    
T Consensus       137 ---v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I  213 (365)
T COG1163         137 ---VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRI  213 (365)
T ss_pred             ---eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCc
Confidence               3456699999998872                                          222222222222211    


Q ss_pred             -------------------hhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccc
Q 022188          131 -------------------LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEA  191 (301)
Q Consensus       131 -------------------~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  191 (301)
                                         +.+..++.|.++++||+|....  +.++.            +....  +.++      .|+
T Consensus       214 ~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~------------l~~~~--~~v~------isa  271 (365)
T COG1163         214 HNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELER------------LARKP--NSVP------ISA  271 (365)
T ss_pred             ccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHH------------HHhcc--ceEE------Eec
Confidence                               2233456799999999997654  22222            22211  3333      678


Q ss_pred             cchhHHHHHHHHHHHHHh
Q 022188          192 KGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       192 ~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+.++++|.+.|.+.+.
T Consensus       272 ~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         272 KKGINLDELKERIWDVLG  289 (365)
T ss_pred             ccCCCHHHHHHHHHHhhC
Confidence            888899999999988764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.52  E-value=4.4e-13  Score=112.67  Aligned_cols=168  Identities=20%  Similarity=0.208  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      -|++||.||||||||+++++....   .....+.||-....... ...+..+++-|.||+........-++.++.+.+..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            478999999999999999998765   22334444443333322 24566799999999988665555566778887776


Q ss_pred             cCCCccEEEEEEecCCCCC---H-HH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188          100 AKDGIHAFLVVFSVTNRFS---Q-EE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~---~-~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    .++++|+|++ +..   + ++ ..+...|...-..-..+|.+|++||+|..... +.++.+.+.        +..
T Consensus       238 t----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~--------l~~  303 (369)
T COG0536         238 T----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKA--------LAE  303 (369)
T ss_pred             h----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHH--------HHH
Confidence            6    8999999998 332   2 22 23333444332222445999999999955330 233332222        222


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .++.....+     .|+.++.++++|+..+..++..
T Consensus       304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence            223222211     5777888999999998887765

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=2.8e-13  Score=119.83  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=121.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeeEeEEEEeeCC--eeEEEEeCCCC
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------AGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGL   79 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~   79 (301)
                      |.++.++++||-|-..|||||..+|+...-+...             .-..+.|...+.....+.++  ..+++|||||.
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            3456789999999999999999998754321100             11237888888887774332  68899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~  159 (301)
                      -|+..       |+.+.+..+    +++|+|+|++.+...+....+...-+.   ..  .+|.|+||+|+..+   ..+.
T Consensus       136 vDFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~---~L--~iIpVlNKIDlp~a---dpe~  196 (650)
T KOG0462|consen  136 VDFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA---GL--AIIPVLNKIDLPSA---DPER  196 (650)
T ss_pred             ccccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc---CC--eEEEeeeccCCCCC---CHHH
Confidence            99865       666666666    999999999988888776655544332   32  68999999997654   2333


Q ss_pred             HhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      ...+     +.+++..+...++.      .||+.|.++.++++.|.+.++...
T Consensus       197 V~~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  197 VENQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             HHHH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCC
Confidence            3333     55566666665555      799999999999999999887543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=1.7e-12  Score=99.85  Aligned_cols=156  Identities=18%  Similarity=0.232  Sum_probs=101.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (301)
                      ..+|+|+|+.|+|||||+.++..+....+     ..+..+   .|+..........++..+++++|||...         
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R---------   80 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER---------   80 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence            46899999999999999999997764222     111222   3444444444545558999999999433         


Q ss_pred             HHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                        +...+....+++.++++++|.+.+.+......+..+......    |+++..||.|+.+.           +-++.++
T Consensus        81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~i----p~vVa~NK~DL~~a-----------~ppe~i~  143 (187)
T COG2229          81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPI----PVVVAINKQDLFDA-----------LPPEKIR  143 (187)
T ss_pred             --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCC----CEEEEeeccccCCC-----------CCHHHHH
Confidence              222333346788999999999866666777788888776442    99999999998866           2222244


Q ss_pred             HHHHHc--CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          171 EILQLC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       171 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +++..+  ..+++.      .++..+.+..+.+..+..
T Consensus       144 e~l~~~~~~~~vi~------~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         144 EALKLELLSVPVIE------IDATEGEGARDQLDVLLL  175 (187)
T ss_pred             HHHHhccCCCceee------eecccchhHHHHHHHHHh
Confidence            444433  334444      445455666666655543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.51  E-value=2.7e-13  Score=128.38  Aligned_cols=157  Identities=11%  Similarity=0.120  Sum_probs=95.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeeEeEEE
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTT   63 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~   63 (301)
                      +..+..+|+|+|++++|||||+++|+.......              +.                 ...+.|.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            334557899999999999999999986442111              00                 00133444433333


Q ss_pred             EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      . +++..+.++||||..+       ....+..    ....+|++++|+|+..+....+...+..+.. ++.   .+++++
T Consensus       100 ~-~~~~~~~liDtPG~~~-------f~~~~~~----~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv  163 (632)
T PRK05506        100 A-TPKRKFIVADTPGHEQ-------YTRNMVT----GASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA  163 (632)
T ss_pred             c-cCCceEEEEECCChHH-------HHHHHHH----HHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence            3 5677899999999533       1222222    3456799999999986766665555555443 343   278999


Q ss_pred             EeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHH
Q 022188          144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVR  198 (301)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  198 (301)
                      +||+|....+...+++....     +..++...+.   ++++      .|+.++.++.
T Consensus       164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~iip------iSA~~g~ni~  210 (632)
T PRK05506        164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHDVTFIP------ISALKGDNVV  210 (632)
T ss_pred             EEecccccchhHHHHHHHHH-----HHHHHHHcCCCCccEEE------EecccCCCcc
Confidence            99999864211333333333     4445555443   2344      5666666655

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.51  E-value=4.3e-13  Score=102.60  Aligned_cols=162  Identities=18%  Similarity=0.160  Sum_probs=100.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ..++|+|+|.+|+|||||+|.+........-..   ....|+...+   . .....+.+|||.|            ++..
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V---d-~~~vtlQiWDTAG------------QERF   71 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV---D-DRSVTLQIWDTAG------------QERF   71 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE---c-CeEEEEEEEeccc------------HHHh
Confidence            347999999999999999999987765322111   1222332211   1 2223678999999            2333


Q ss_pred             HHH-hccCCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           95 KCL-GMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        95 ~~~-~~~~~~~~~il~v~~~~~~~~~--~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                      ..+ ...|+++|+.+++.|...+-+.  .+...-+.|...-..+ -..|++|+.||+|........+.          .+
T Consensus        72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS----------~~  141 (210)
T KOG0394|consen   72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS----------EK  141 (210)
T ss_pred             hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee----------HH
Confidence            333 3458999999999999843333  3333444555543222 34599999999997653101111          12


Q ss_pred             HHHHHcC----CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          171 EILQLCD----NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       171 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ....+|.    .+|+.      .||+...++++.+..+.+..-.+
T Consensus       142 ~Aq~WC~s~gnipyfE------tSAK~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  142 KAQTWCKSKGNIPYFE------TSAKEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             HHHHHHHhcCCceeEE------ecccccccHHHHHHHHHHHHHhc
Confidence            2233443    44555      78899999999999887765443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.51  E-value=4.9e-13  Score=106.72  Aligned_cols=157  Identities=19%  Similarity=0.277  Sum_probs=105.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc----
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS----   86 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~----   86 (301)
                      .++|.|||++|.||||++|+|+...+..++..     +.+.|+......... .++  -.+++||||||+|..-.+    
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            37899999999999999999987665443222     233455544433332 233  367999999999964322    


Q ss_pred             ---HHHHHHHHHHHhc----------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           87 ---EFVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        87 ---~~~~~~~~~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                         ..+.++..+++..          ...++|+++|.++++ +.+...+.+.++.|.+..      +++-|+-|.|.+.-
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl  199 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH
Confidence               1123333333321          134689999999988 788888888888887752      78899999997654


Q ss_pred             ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCc
Q 022188          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK  188 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (301)
                        ++...|...     ++.-+.+.+..+++.+....
T Consensus       200 --eEr~~Fkqr-----I~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  200 --EERSAFKQR-----IRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             --HHHHHHHHH-----HHHHHHhcCccccccccccc
Confidence              444555544     77777788888888666543

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.6e-13  Score=104.01  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=99.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|.+|+|||-|+.+.+.........++.+....  ..... .++.  ...+|||.|            ++..++
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~--t~t~~-vd~k~vkaqIWDTAG------------QERyrA   78 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFA--TRTVN-VDGKTVKAQIWDTAG------------QERYRA   78 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEE--eecee-ecCcEEEEeeecccc------------hhhhcc
Confidence            478999999999999999999977763333333332222  22222 4444  568999999            333444


Q ss_pred             H-hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 L-GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~-~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      + ..+|+++.+.++|.|++.+.+-+. .+||+.|+......+  ++++|.||+|+..-  ..+...       .-+.+.+
T Consensus        79 itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~l--raV~te-------~~k~~Ae  147 (222)
T KOG0087|consen   79 ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNHL--RAVPTE-------DGKAFAE  147 (222)
T ss_pred             ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhhc--cccchh-------hhHhHHH
Confidence            3 456899999999999985555554 567788877765555  89999999997542  111110       0223334


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ..+...+.      .||....++...+..+..
T Consensus       148 ~~~l~f~E------tSAl~~tNVe~aF~~~l~  173 (222)
T KOG0087|consen  148 KEGLFFLE------TSALDATNVEKAFERVLT  173 (222)
T ss_pred             hcCceEEE------ecccccccHHHHHHHHHH
Confidence            33433333      566667778877765544

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=4.3e-13  Score=98.67  Aligned_cols=161  Identities=15%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++.|+|.+.+|||||+-+.++....+.-.+..+..  ..+..+. ......+.+|||.|...           +....
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqEr-----------yrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQER-----------YRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccchh-----------hhHHH
Confidence            3589999999999999999999877633322222222  2222222 12345789999999332           22333


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++++++++|++.|.++.-+-.. ..+.-.++...-.++  |++++.||+|....  ..+..       +..+.+...+
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~-------e~g~~l~~~L  156 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISH-------ERGRQLADQL  156 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeH-------HHHHHHHHHh
Confidence            456899999999999984322222 334444444433344  99999999997655  22211       1145667777


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      |..++.      .|++.+.++.++++.+...+-
T Consensus       157 GfefFE------tSaK~NinVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  157 GFEFFE------TSAKENINVKQVFERLVDIIC  183 (193)
T ss_pred             ChHHhh------hcccccccHHHHHHHHHHHHH
Confidence            876665      788888899999888776654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.50  E-value=3e-13  Score=111.00  Aligned_cols=115  Identities=21%  Similarity=0.333  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeeEeEEEEee---------CCeeEEEEeC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------DGQVVNVIDT   76 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~liDt   76 (301)
                      ++|+|+|+.++|||||+++|+...-.....              ...+.|.........+.         .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            479999999999999999997543210000              01123333222222211         1567899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ||..++.       .+...+    +..+|++++|+|+..+.+...+..++.+... +  .  |+++++||+|+.
T Consensus        81 PG~~~f~-------~~~~~~----l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~--~--p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-------SEVTAA----LRLCDGALVVVDAVEGVCVQTETVLRQALKE-R--V--KPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-------HHHHHH----HHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECCCcc
Confidence            9987642       233333    3455999999999977777776666655432 2  2  899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.50  E-value=3.9e-13  Score=123.61  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC--ccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt   76 (301)
                      ...++|+|+|+.|+|||||+++|+....  ...+..                  ..+.+.......+. +++..+++|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEEC
Confidence            3568999999999999999999962111  000000                  01233333334444 78889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ||..++.       .+....+    ..+|++++|+|+..+........+..... .+.    |+++++||+|....
T Consensus        87 PG~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~i----Piiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRL-RDT----PIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHh-cCC----CEEEEEECCccccc
Confidence            9976642       2333333    35599999999987777666666655443 233    99999999997654

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.50  E-value=9.3e-14  Score=121.59  Aligned_cols=138  Identities=18%  Similarity=0.214  Sum_probs=98.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHH
Q 022188           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (301)
Q Consensus        12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (301)
                      +++.+...++++|+|.+++|||||+|.++...+   ...+...|+..-..++..+.-..+.++||||+.|....+.-+.+
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence            466677889999999999999999999987654   34456667776666656567778999999999985432222222


Q ss_pred             HHHHHHhccCCCccEEEEEEecCC--CCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188           92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~  159 (301)
                       +. .+.....-..++||+.|++.  +.+..+ ..++..++.+|.+.   |+|+|+||+|....  +.+.+
T Consensus       238 -mq-sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~  301 (620)
T KOG1490|consen  238 -MQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ  301 (620)
T ss_pred             -HH-HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence             11 12222233468999999983  444444 56788888888775   89999999998877  55544

>smart00053 DYNc Dynamin, GTPase

Probab=99.48  E-value=1.5e-12  Score=107.57  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcce---------eeE-----------------------------
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTK---------TCE-----------------------------   59 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t~---------~~~-----------------------------   59 (301)
                      +.|+|+|++|+||||++++|+|...++.+..  ...++.         ...                             
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~  106 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT  106 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999864443211  110000         000                             


Q ss_pred             ---------eEEEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCC-CccEEEEEEecCCCCCHHH-HHHHH
Q 022188           60 ---------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVH  126 (301)
Q Consensus        60 ---------~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~~~~~-~~~l~  126 (301)
                               ...+...+...++||||||+.....  ....+...+...+..+.. ..+.+++|+++...+...+ ..+.+
T Consensus       107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~  186 (240)
T smart00053      107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK  186 (240)
T ss_pred             CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence                     0001111236789999999975421  112333344443444444 3468999999986666665 45555


Q ss_pred             HHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          127 RLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       127 ~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .+... +    +++++|+||+|....
T Consensus       187 ~ld~~-~----~rti~ViTK~D~~~~  207 (240)
T smart00053      187 EVDPQ-G----ERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHc-C----CcEEEEEECCCCCCc
Confidence            55432 3    289999999998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.48  E-value=6.6e-13  Score=120.14  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeeEeEEEEeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (301)
                      +..+|+++|+.++|||||+.+|+...-...              +               ....+.|.......+. +++
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~   84 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   84 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence            458999999999999999999874211000              0               0122455555554444 678


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCeEE
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      ..++++||||..++       ..++..    ....+|++++|+|+..+.       ....++.+..+.. +|.+   +++
T Consensus        85 ~~i~lIDtPGh~~f-------~~~~~~----g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii  149 (446)
T PTZ00141         85 YYFTIIDAPGHRDF-------IKNMIT----GTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI  149 (446)
T ss_pred             eEEEEEECCChHHH-------HHHHHH----hhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence            89999999995442       223333    345669999999998554       3455666665544 4543   578


Q ss_pred             EEEeCCCCCC--CccccHHHHhcccCCchHHHHHHHcCC
Q 022188          142 VVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       142 lv~nk~D~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +++||+|...  -+...+++...+     +..++...+.
T Consensus       150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~  183 (446)
T PTZ00141        150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGY  183 (446)
T ss_pred             EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCC
Confidence            9999999432  111445555554     6666665543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.48  E-value=2.6e-12  Score=116.72  Aligned_cols=138  Identities=15%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      .+.++|+++|+.++|||||+++|++.....              ......+.|.......+. +++..+++|||||..+ 
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~-  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD-  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH-
Confidence            445899999999999999999999532100              001112445444444333 5678899999999544 


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH-Hh
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FL  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~-~~  161 (301)
                            ....+...+    ..+|++++|+|+..+.....++.+..+... +.+   ++++++||+|....  ....+ ..
T Consensus       157 ------f~~~~~~g~----~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~  220 (478)
T PLN03126        157 ------YVKNMITGA----AQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE  220 (478)
T ss_pred             ------HHHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence                  222333333    466999999999977777777777766543 542   37889999998754  33222 22


Q ss_pred             cccCCchHHHHHHHcC
Q 022188          162 GHECPKPLKEILQLCD  177 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~  177 (301)
                      .+     +..++..++
T Consensus       221 ~~-----i~~~l~~~g  231 (478)
T PLN03126        221 LE-----VRELLSSYE  231 (478)
T ss_pred             HH-----HHHHHHhcC
Confidence            23     666766654

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.47  E-value=9.3e-13  Score=96.99  Aligned_cols=157  Identities=18%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|.+|+|||||+-.......  ++................ .+|  ..+.+|||.|           .+.+....
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAG-----------qErFrtit   74 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAG-----------QERFRTIT   74 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEee-cCCcEEEEEEeeccc-----------HHHHHHHH
Confidence            3578999999999999998876544  221111111112222222 334  3679999999           22344445


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++++|++++|.|.++.-+-.. ++||+.++..+.. +  |-++|.||.|..+.  ..+...-       .+......
T Consensus        75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~m  142 (198)
T KOG0079|consen   75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTED-------ARAFALQM  142 (198)
T ss_pred             HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehHH-------HHHHHHhc
Confidence            556899999999999995544444 6788888887653 3  89999999997654  2222111       23344444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +..++.      .|++...+++..+..|.+.+
T Consensus       143 gie~FE------TSaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen  143 GIELFE------TSAKENENVEAMFHCITKQV  168 (198)
T ss_pred             Cchhee------hhhhhcccchHHHHHHHHHH
Confidence            555555      78888888999888887654

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.47  E-value=1.5e-12  Score=106.00  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +|+|+|++|+|||||++.|.+.....+..+    + .........   ..+..+.||||||....       ...+    
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s----~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~~~----   65 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS----I-EPNVATFILNSEGKGKKFRLVDVPGHPKL-------RDKL----   65 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCc----E-eecceEEEeecCCCCceEEEEECCCCHHH-------HHHH----
Confidence            599999999999999999997754222211    1 111111111   23567899999996541       1222    


Q ss_pred             hccCCCc-cEEEEEEecCCCCCHHHHHHHHHHHHhh----CccccCeEEEEEeCCCCCCC
Q 022188           98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        98 ~~~~~~~-~~il~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ..+++.. +++|||+|+.... .........+...+    ......|++++.||+|+...
T Consensus        66 ~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          66 LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            2234455 9999999998331 11112222222211    10112399999999998654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.46  E-value=3.4e-12  Score=110.97  Aligned_cols=175  Identities=19%  Similarity=0.166  Sum_probs=91.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV---TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ...+|||+|.+|+|||||||+|.|...-+.+..+.+.   |.....+  ....-.++++||.||++.+.-+...    +.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~----Yl  107 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEE----YL  107 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence            3579999999999999999999885443333333332   2233332  3345567999999999876544333    22


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC-CC------ccccHHHHhcccCCc
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED------HEKTLEDFLGHECPK  167 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~-~~------~~~~~~~~~~~~~~~  167 (301)
                      ..+.  ....|.||++.+ . +++..+....+.++.. |.    |+++|-||+|.. ..      ..-..++.+.. ...
T Consensus       108 ~~~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~  177 (376)
T PF05049_consen  108 KEVK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRE  177 (376)
T ss_dssp             HHTT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHH
T ss_pred             HHcc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCHHHHHHH-HHH
Confidence            2221  234487766544 3 8999998888888775 54    899999999952 11      00111122221 111


Q ss_pred             hHHHHHHH---cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          168 PLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       168 ~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      ...+-+.+   ...+++.+++....    ...+..|.+.+..-++...
T Consensus       178 ~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  178 NCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence            11222222   23567777766433    3678888888877776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.46  E-value=1e-12  Score=120.94  Aligned_cols=119  Identities=17%  Similarity=0.193  Sum_probs=79.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC--CccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRK--AFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~--~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt   76 (301)
                      ...++|+|+|+.|+|||||+++|+-..  ....+..                  ..+.|.......+. +++..+.+|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence            456899999999999999999985211  1001100                  11334444444444 78899999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ||..++.       .+...+    +..+|++|+|+|+..++......+++.+.. .+  .  |+++++||+|....
T Consensus        88 PG~~df~-------~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~--~--PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDFS-------EDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD--T--PIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhHH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC--C--CEEEEEECccccCC
Confidence            9976531       223333    345699999999987777666666665543 22  2  99999999997643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.2e-12  Score=114.83  Aligned_cols=161  Identities=17%  Similarity=0.210  Sum_probs=113.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+.|.++||--.|||||+..|-+-.+..  .-..+.|.+...+.....  +...++++||||...            +..
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA------------Ft~   70 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA------------FTA   70 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH------------HHH
Confidence            3679999999999999999998877733  335678999988887754  457999999999332            222


Q ss_pred             Hhc-cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HH
Q 022188           97 LGM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQ  174 (301)
Q Consensus        97 ~~~-~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~  174 (301)
                      +.. -+.-.|.+++|+++++++.++..+.+..++.. +  +  |+++.+||+|..+.+...+...+.+ .     .+ .+
T Consensus        71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~--v--P~iVAiNKiDk~~~np~~v~~el~~-~-----gl~~E  139 (509)
T COG0532          71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G--V--PIVVAINKIDKPEANPDKVKQELQE-Y-----GLVPE  139 (509)
T ss_pred             HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C--C--CEEEEEecccCCCCCHHHHHHHHHH-c-----CCCHh
Confidence            221 23345999999999999999999988888875 3  3  9999999999886522222222221 0     11 12


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .++.. ..   ..+.||+++.|+++|+..+.-..
T Consensus       140 ~~gg~-v~---~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         140 EWGGD-VI---FVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             hcCCc-eE---EEEeeccCCCCHHHHHHHHHHHH
Confidence            22222 11   13479999999999999886554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.46  E-value=1e-13  Score=103.09  Aligned_cols=116  Identities=21%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-cc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFK-AS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +|+|+|+.|+|||||+++|++..... .. ....+.+....... .......+.+||++|........       ..++.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~-------~~~~~   72 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIV-VDGDRQSLQFWDFGGQEEFYSQH-------QFFLK   72 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEE-ETTEEEEEEEEEESSSHCHHCTS-------HHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEE-ecCCceEEEEEecCccceecccc-------cchhh
Confidence            69999999999999999999877641 11 11112222222111 11223358899999965422111       11122


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                          .+|++++|+|++++.+-.. ..++.++...-+.....|+++|.||.|
T Consensus        73 ----~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   73 ----KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             ----HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             ----cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence                4499999999984433333 234444544432112239999999988

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2e-12  Score=114.48  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=117.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .++.|-|+||...|||||+.+|-+..+..  .-.++.|.+...+.+...+|..+++.||||.-            .+..+
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa------------AF~aM  217 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLPSGKSITFLDTPGHA------------AFSAM  217 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecCCCCEEEEecCCcHH------------HHHHH
Confidence            35789999999999999999998777633  33568899998888887899999999999932            23333


Q ss_pred             h-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 G-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      . .-....|.+++|+.++++..++..+.++..+..   .+  |+++.+||+|....+-+.+...+..     ..-.++..
T Consensus       218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~  287 (683)
T KOG1145|consen  218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDL  287 (683)
T ss_pred             HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHc
Confidence            2 224556999999999999999998888887765   44  9999999999875522222222221     11234555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      |+.+-.    .+.|+.++.+++.|.+.+.-.
T Consensus       288 GGdVQv----ipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  288 GGDVQV----IPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             CCceeE----EEeecccCCChHHHHHHHHHH
Confidence            654322    237888999999988877543

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.44  E-value=2.6e-12  Score=115.94  Aligned_cols=165  Identities=12%  Similarity=0.150  Sum_probs=101.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEE-----------------E---------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----------------V---------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----------------~---------------   64 (301)
                      ...+|+++|+...|||||+.+|+|.....-. ....+.|........                 .               
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            3489999999999999999999986542211 001122211111100                 0               


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      ..-...+.++||||..+       ....+...    ...+|++++|+++..+ .....++.+..+ ..++..   |++++
T Consensus       113 ~~~~~~i~~IDtPGH~~-------fi~~m~~g----~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi~---~iIVv  177 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHDI-------LMATMLNG----AAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKLK---HIIIL  177 (460)
T ss_pred             ccccceEeeeeCCCHHH-------HHHHHHHH----HhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCCC---cEEEE
Confidence            00124689999999432       22333333    3466999999999854 455555555444 344543   78999


Q ss_pred             EeCCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +||+|+.+.  ..+.+.+..     ++.++...   ..+++      +.|+.++.+++.|++.|...++.
T Consensus       178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~~~~~ii------pVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIADNAPII------PISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             EecccccCH--HHHHHHHHH-----HHHHHHhhccCCCeEE------EeeCCCCCCHHHHHHHHHhhCCC
Confidence            999998754  444444443     44444332   22333      37888999999999999976653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.43  E-value=8.6e-12  Score=102.96  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+++|+.|+|||||++++.+........    .|.......... ..  ...+.+|||+|..           ++...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHH
Confidence            799999999999999999999877643332    221111111111 11  3457899999943           34445


Q ss_pred             HhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...++.++++++++++...  ++......+...+....+..  .|++++.||+|+...
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~  126 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE  126 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence            5566789999999999983  22222345555666654322  399999999998755

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.43  E-value=9.7e-13  Score=107.14  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             eeEEEEeCCCCCC---CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH--h-hCccccCeEEE
Q 022188           69 QVVNVIDTPGLFD---LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN--L-FGKNVFDYMIV  142 (301)
Q Consensus        69 ~~~~liDtPG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~~~il  142 (301)
                      ....+|||||...   .+.+..    -+...+.  ...|-+++||+|.. |-+.....+-.+|..  + +....  |+++
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGs----IIte~la--ss~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktkl--p~iv  186 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGS----IITETLA--SSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKL--PFIV  186 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCcc----chHhhHh--hcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccC--CeEE
Confidence            3578999999654   222222    2333333  23678999999987 444443333333322  2 22234  9999


Q ss_pred             EEeCCCCCCCccccHHHHhcccCC-----------chHHHHHHHcCCceEEecC---CCcccccchhHHHHHHHHHHHHH
Q 022188          143 VFTGGDDLEDHEKTLEDFLGHECP-----------KPLKEILQLCDNRCVLFDN---KTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       143 v~nk~D~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ++||+|..+.  .-..+|+.. +.           ..+..+..........|..   ...+|+.+|.|.++++..+...+
T Consensus       187 vfNK~Dv~d~--~fa~eWm~D-fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  187 VFNKTDVSDS--EFALEWMTD-FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             EEeccccccc--HHHHHHHHH-HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence            9999998876  444444432 11           1111111111111111211   12367888999999999999988


Q ss_pred             hhc
Q 022188          209 VQN  211 (301)
Q Consensus       209 ~~~  211 (301)
                      .++
T Consensus       264 dEy  266 (366)
T KOG1532|consen  264 DEY  266 (366)
T ss_pred             HHH
Confidence            764

>PLN00023 GTP-binding protein; Provisional

Probab=99.42  E-value=4.4e-12  Score=108.15  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe------------eCCeeEEEEeCCCCCCCCCCc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------------KDGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~liDtPG~~~~~~~~   86 (301)
                      ..+|+|+|..|+|||||++.+.+...........+.+.......+..            .....+.||||+|...     
T Consensus        21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr-----   95 (334)
T PLN00023         21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER-----   95 (334)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-----
Confidence            38999999999999999999997664222222222222211111110            0124589999999443     


Q ss_pred             HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc----------cccCeEEEEEeCCCCCC
Q 022188           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK----------NVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~nk~D~~~  151 (301)
                            +......++++++++|+|+|++++-+... ..++..+......          ....|++||.||+|+..
T Consensus        96 ------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         96 ------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             ------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                  22333445788999999999995544443 3455556554210          01138999999999754

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.42  E-value=1.1e-12  Score=97.66  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~-~   98 (301)
                      ++|+++|..=+|||||+=+...........+....+.......+. ...-.+.+|||.|.            +...++ .
T Consensus        14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQ------------ErfHALGP   80 (218)
T KOG0088|consen   14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQ------------ERFHALGP   80 (218)
T ss_pred             eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccch------------HhhhccCc
Confidence            789999999999999998877444311111111111111111111 23457899999993            223333 4


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+|++.+++++|.|++++-+-+- +.|...|+.++|..+  .++||.||+|+.+.-..+..+         ...+.+..|
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAesvG  149 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAESVG  149 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHhhc
Confidence            46899999999999996655554 678889999999887  899999999975431111111         234556667


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..++.      .||+++.|+.+|+..+-..+
T Consensus       150 A~y~e------TSAk~N~Gi~elFe~Lt~~M  174 (218)
T KOG0088|consen  150 ALYME------TSAKDNVGISELFESLTAKM  174 (218)
T ss_pred             hhhee------cccccccCHHHHHHHHHHHH
Confidence            77776      89999999999999886544

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.40  E-value=1.4e-11  Score=107.07  Aligned_cols=173  Identities=15%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCC---cceeeEe-----EEEEeeC--CeeEE
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSG---VTKTCEM-----KTTVLKD--GQVVN   72 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~---~t~~~~~-----~~~~~~~--~~~~~   72 (301)
                      +....|+|+|+.++|||||+|++++..+.+...              +..+   .|+....     ..+...+  ..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            345789999999999999999999984333221              1122   3333322     1111111  25789


Q ss_pred             EEeCCCCCCCCCCcHHHHHH-----------------HHH--HHhccCCCccEEEEEE-ecC------CCCCHHHHHHHH
Q 022188           73 VIDTPGLFDLSAGSEFVGKE-----------------IVK--CLGMAKDGIHAFLVVF-SVT------NRFSQEEETAVH  126 (301)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~il~v~-~~~------~~~~~~~~~~l~  126 (301)
                      +|||+|+.+.......-...                 .+.  .-.....+.+..|+|. |.+      ..+...+.+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999998754321110000                 000  0011123668888888 774      356677788888


Q ss_pred             HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       127 ~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .|++. +.    |+++++|+.|-...  ... +.        ...+-.+.+.++.+++..    ......+..+++.+..
T Consensus       175 eLk~~-~k----PfiivlN~~dp~~~--et~-~l--------~~~l~eky~vpvl~v~c~----~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       175 ELKEL-NK----PFIILLNSTHPYHP--ETE-AL--------RQELEEKYDVPVLAMDVE----SMRESDILSVLEEVLY  234 (492)
T ss_pred             HHHhc-CC----CEEEEEECcCCCCc--hhH-HH--------HHHHHHHhCCceEEEEHH----HcCHHHHHHHHHHHHh
Confidence            88875 33    99999999994323  111 10        123335555555554332    2233556666665544


Q ss_pred             HHh
Q 022188          207 VIV  209 (301)
Q Consensus       207 ~~~  209 (301)
                      -.|
T Consensus       235 EFP  237 (492)
T TIGR02836       235 EFP  237 (492)
T ss_pred             cCC
Confidence            433

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.39  E-value=1.4e-11  Score=111.51  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=86.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCc--------------cc---------------cCCCCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--------------KA---------------SAGSSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~--------------~~---------------~~~~~~~t~~~~~~~~~~~~   67 (301)
                      .+..+|+++|+.++|||||+-+|+-..-.              ..               .....+.|.......+. ++
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~   83 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TT   83 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CC
Confidence            34589999999999999999888631110              00               00112455555555444 67


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CC------HHHHHHHHHHHHhhCccccCeE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      +..++++||||..+           +...+......+|++++|+|+... +.      ...++.+..+. .+|.+   ++
T Consensus        84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~gi~---~i  148 (447)
T PLN00043         84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLGVK---QM  148 (447)
T ss_pred             CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcCCC---cE
Confidence            88999999999544           333333344577999999999843 32      34444444433 34543   57


Q ss_pred             EEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcC
Q 022188          141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus       141 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ++++||+|....  ....+++.+.+     ++.++...+
T Consensus       149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g  182 (447)
T PLN00043        149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG  182 (447)
T ss_pred             EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence            889999996521  11334444444     666776665

>cd01882 BMS1 Bms1

Probab=99.39  E-value=4.2e-11  Score=99.04  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=75.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ..++..|+|+|++|+|||||+|+|++...........+ +.     ......+..++++||||..          ..+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i-----~i~~~~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI-----TVVTGKKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE-----EEEecCCceEEEEeCCchH----------HHHHH
Confidence            44568899999999999999999997633111111111 11     1122467788999999832          23333


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCC
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED  152 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~  152 (301)
                      .+    ..+|++++++|+...+...+...+..+... +.    | +++++||+|....
T Consensus       100 ~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~  148 (225)
T cd01882         100 IA----KVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK  148 (225)
T ss_pred             HH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence            33    345999999999877777777777776653 43    5 4559999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.37  E-value=3.9e-11  Score=103.63  Aligned_cols=87  Identities=20%  Similarity=0.187  Sum_probs=53.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------------eCCeeEEEEeCCC
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------------KDGQVVNVIDTPG   78 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG   78 (301)
                      |+|+|.+|+|||||+|+|++... .... .+..|..........                       +....+.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~~-~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIAN-YPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cccC-CCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            68999999999999999998764 2111 112222221111110                       1234789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      +.........+...+...+    +.+|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            8653222223444444444    4559999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.2e-11  Score=106.65  Aligned_cols=137  Identities=19%  Similarity=0.270  Sum_probs=94.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------------------------CcceeeEeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---------------------------------GVTKTCEMKTTV   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~---------------------------------~~t~~~~~~~~~   64 (301)
                      +..+++++||..+|||||+-.|+    +..+....                                 +.|.......+.
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLl----y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe   81 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLL----YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE   81 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhH----HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence            45899999999999999998886    33332211                                 556655555544


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCcccc
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVF  137 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~  137 (301)
                       .+...++++|+||.-|           +..-+......+|+.++|+++...       ..++.++. ..|...+|..  
T Consensus        82 -t~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~--  146 (428)
T COG5256          82 -TDKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIK--  146 (428)
T ss_pred             -cCCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCc--
Confidence             4556899999999444           222222334566999999999844       33444443 4555566765  


Q ss_pred             CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                       .+++++||+|..+-+...+++....     +..++..+|..
T Consensus       147 -~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~  182 (428)
T COG5256         147 -QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN  182 (428)
T ss_pred             -eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence             8999999999886555777777666     77777777754

>PTZ00258 GTP-binding protein; Provisional

Probab=99.35  E-value=9.9e-11  Score=103.07  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~   81 (301)
                      ...+|+|+|.||+|||||+|+|++.... . ...++.|...........+                ...+.++||||+..
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v-~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVP-A-ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCccc-c-cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            3478999999999999999999987651 1 1123334333333222111                23589999999986


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      .......+...+...+.    .+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir----~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIR----AVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHH----HCCEEEEEEeCC
Confidence            44333445555555544    559999999984

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=99.35  E-value=2.9e-11  Score=121.44  Aligned_cols=132  Identities=19%  Similarity=0.229  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc---C---CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC----CcHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS---A---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEFV   89 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~---~---~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~   89 (301)
                      +-.+|+|++|+||||+++.. |...+-..   .   ...+.|..     +.+|-....++|||+|.+-+..    .+...
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence            45899999999999999877 54432111   0   01122322     3445566778999999775443    23455


Q ss_pred             HHHHHHHHhcc--CCCccEEEEEEecCCCCC--H--------HHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH
Q 022188           90 GKEIVKCLGMA--KDGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL  157 (301)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~  157 (301)
                      +..+...+...  .+.+|++|+++++.+-+.  .        .-+..+..+.+.+|..+  |+.+++||+|....    +
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence            67777777765  357899999999983332  2        22556677777788777  99999999999844    7


Q ss_pred             HHHhcc
Q 022188          158 EDFLGH  163 (301)
Q Consensus       158 ~~~~~~  163 (301)
                      .+|...
T Consensus       260 ~~~f~~  265 (1169)
T TIGR03348       260 EEFFAD  265 (1169)
T ss_pred             HHHHHh
Confidence            777765

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.34  E-value=1.1e-10  Score=101.66  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC----------------eeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (301)
                      .+|+|+|.||+|||||+|+|++... ... ..++.|...........+.                ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~-nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eec-ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6799999999999999999999874 111 1223333333222221111                258999999998754


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      .....+..++...+    +.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i----~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANI----REVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence            33344555555544    4559999999984

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.33  E-value=1.1e-10  Score=103.76  Aligned_cols=89  Identities=20%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--------------------eeC---CeeEEEEeC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------LKD---GQVVNVIDT   76 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~---~~~~~liDt   76 (301)
                      .+|+|+|.+|+|||||+|+|++.... .. ..++.|.........                    .++   ...+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~-~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE-IA-NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc-cc-CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            57999999999999999999987642 11 112223222221111                    011   245789999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ||+.........+...+...+.    .+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence            9987643222334445554444    559999999996

>PTZ00416 elongation factor 2; Provisional

Probab=99.33  E-value=1e-11  Score=120.56  Aligned_cols=117  Identities=18%  Similarity=0.265  Sum_probs=79.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEeeC----------CeeEE
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKD----------GQVVN   72 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~----------~~~~~   72 (301)
                      +..++|+|+|+.++|||||+++|+...-......              ..+.|.......+. +.          +..++
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLY-YEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEE-eecccccccCCCceEEE
Confidence            4568999999999999999999986332111000              01222222222222 22          56789


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      ++||||+.++       ..++...    ...+|++++|+|+..++...+...++.+... +  .  |+++++||+|..
T Consensus        96 liDtPG~~~f-------~~~~~~a----l~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~--~--p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDF-------SSEVTAA----LRVTDGALVVVDCVEGVCVQTETVLRQALQE-R--I--RPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhH-------HHHHHHH----HhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C--C--CEEEEEEChhhh
Confidence            9999997763       2233333    4566999999999988888888887776654 2  2  899999999986

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.32  E-value=4.3e-12  Score=91.00  Aligned_cols=142  Identities=19%  Similarity=0.226  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|+.|+|||||+++|-|.......      |   +...   +++.  ..|||||.+-.       .+....++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T---QAve---~~d~--~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T---QAVE---FNDK--GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcc------c---ceee---ccCc--cccCCchhhhh-------hhHHHHHHHH
Confidence            57999999999999999999987763322      1   1111   2221  37999996652       2345566666


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (301)
                      ....+|++++|..+.++.+.--    -.+...    ..+|+|-|+||.|+.+.  ..++    .     .+..+...|. 
T Consensus        61 t~~dadvi~~v~~and~~s~f~----p~f~~~----~~k~vIgvVTK~DLaed--~dI~----~-----~~~~L~eaGa~  121 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFP----PGFLDI----GVKKVIGVVTKADLAED--ADIS----L-----VKRWLREAGAE  121 (148)
T ss_pred             HhhccceeeeeecccCccccCC----cccccc----cccceEEEEecccccch--HhHH----H-----HHHHHHHcCCc
Confidence            6788899999998874322111    112222    22379999999998754  2222    2     3444444553 


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +++.      .++.+..++++|++.+...
T Consensus       122 ~IF~------~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         122 PIFE------TSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             ceEE------EeccCcccHHHHHHHHHhh
Confidence            4444      5566678999999988653

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.32  E-value=3.7e-11  Score=90.17  Aligned_cols=163  Identities=18%  Similarity=0.099  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+++++|.+-+|||+|+...+......-.....++.-..............+.+|||.|.           +.+......
T Consensus         9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsitks   77 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSITKS   77 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHHHH
Confidence            689999999999999999998666522221111111111111122122347799999992           334445556


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      +|+..-++++|.|++++-+-+. ..|+....-..+.+..--+.+|.+|+|+...-..+.++         -..+...+|-
T Consensus        78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aEklAa~hgM  148 (213)
T KOG0091|consen   78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AEKLAASHGM  148 (213)
T ss_pred             HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HHHHHHhcCc
Confidence            6888899999999997766655 34555444444423211355778999976431111111         2345566777


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .++.      .|++++.++++.+..+.+-+
T Consensus       149 ~FVE------TSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  149 AFVE------TSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             eEEE------ecccCCCcHHHHHHHHHHHH
Confidence            7666      89999999999988876543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.30  E-value=2.1e-11  Score=118.54  Aligned_cols=118  Identities=19%  Similarity=0.273  Sum_probs=79.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEee---------------C
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------------D   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------------~   67 (301)
                      ...++|+|+|+.++|||||+++|+...-......              ..+.|.......+.+.               .
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3568999999999999999999985432111100              0123333333333311               2


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..++++||||..++       ..++...+    ..+|++++|+|+..++....+..++.+...   ..  |+++++||+
T Consensus        97 ~~~inliDtPGh~dF-------~~e~~~al----~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~--p~i~~iNK~  160 (843)
T PLN00116         97 EYLINLIDSPGHVDF-------SSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE---RI--RPVLTVNKM  160 (843)
T ss_pred             ceEEEEECCCCHHHH-------HHHHHHHH----hhcCEEEEEEECCCCCcccHHHHHHHHHHC---CC--CEEEEEECC
Confidence            567899999997663       22344444    455999999999988888888777766543   22  899999999


Q ss_pred             CCC
Q 022188          148 DDL  150 (301)
Q Consensus       148 D~~  150 (301)
                      |..
T Consensus       161 D~~  163 (843)
T PLN00116        161 DRC  163 (843)
T ss_pred             ccc
Confidence            987

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.1e-10  Score=86.71  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+++++|+.|+|||.|+........ ....+ ..+.+......+. ..+  ..+.+|||.|           .+.+....
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDdss-HTiGveFgSrIin-VGgK~vKLQIWDTAG-----------QErFRSVt   75 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKF-KDDSS-HTIGVEFGSRIVN-VGGKTVKLQIWDTAG-----------QERFRSVT   75 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhh-ccccc-ceeeeeecceeee-ecCcEEEEEEeeccc-----------HHHHHHHH
Confidence            5799999999999999999885543 33222 1111221111111 333  4679999999           23455555


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+|+++.+.++|.|++++-+-.. ..|+.-++.+.+..+  -++++.||.|+...  ..+ .+++.         ..-+
T Consensus        76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~--R~V-tflEA---------s~Fa  141 (214)
T KOG0086|consen   76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE--REV-TFLEA---------SRFA  141 (214)
T ss_pred             HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh--hhh-hHHHH---------Hhhh
Confidence            667899999999999996655555 345555555544433  56677899997544  111 11111         1112


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      ....+.|-   ..|+.++.++++.+-...
T Consensus       142 qEnel~fl---ETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen  142 QENELMFL---ETSALTGENVEEAFLKCA  167 (214)
T ss_pred             cccceeee---eecccccccHHHHHHHHH
Confidence            22222222   367788888888654443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.29  E-value=1.8e-11  Score=117.30  Aligned_cols=119  Identities=17%  Similarity=0.300  Sum_probs=77.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC--------------ccccCCCCCcceeeEeEE---EEeeCCeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~~~~~liDtPG~~   80 (301)
                      ..++|+|+|+.|+|||||+++|+...-              +.......+.|.......   ...+.+..+++|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            458999999999999999999973210              000000122233322211   123567889999999988


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ++.       .+...++    ..+|++++|+|+..+........++.+... +.    |.++++||+|....
T Consensus        98 ~f~-------~~~~~al----~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~  153 (720)
T TIGR00490        98 DFG-------GDVTRAM----RAVDGAIVVVCAVEGVMPQTETVLRQALKE-NV----KPVLFINKVDRLIN  153 (720)
T ss_pred             ccH-------HHHHHHH----HhcCEEEEEEecCCCCCccHHHHHHHHHHc-CC----CEEEEEEChhcccc
Confidence            742       2333444    445999999999877777766666654432 22    77899999997643

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=4.2e-11  Score=92.35  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=103.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+++|-.||||||++..+--...+.+     .+|.-..+..+. +.+..+++||.-|-..           +...
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~k-----------~R~l   77 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQEK-----------LRPL   77 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCcc-----------cccc
Confidence            4568999999999999999998865554333     234444444444 5688999999999543           3334


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ...+++..+++|||+|.+++..-.+  ....+.+...--.  ..|++++.||.|...+  -+..+.-+.      -.+-.
T Consensus        78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~a--ls~~ei~~~------L~l~~  147 (181)
T KOG0070|consen   78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGA--LSAAEITNK------LGLHS  147 (181)
T ss_pred             hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhcccc--CCHHHHHhH------hhhhc
Confidence            5556788899999999984433333  3333444332211  2399999999997766  333332221      11111


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      -+...++.    ..+.|.+|.|+.+-++++...+..
T Consensus       148 l~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  148 LRSRNWHI----QSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cCCCCcEE----eeccccccccHHHHHHHHHHHHhc
Confidence            11222222    235667789999999999877643

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.27  E-value=8.9e-12  Score=97.98  Aligned_cols=120  Identities=16%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...|+|+|++|+|||+|+..|.......+-.+   .  ..... ......+..+.+||+||.....       ..+...+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---c--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence            36799999999999999999986643222211   1  11111 0111245689999999977632       2233321


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhC----ccccCeEEEEEeCCCCCCC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~nk~D~~~~  152 (301)
                      . +.+.+.+||||+|.+ .+...-+..-+.|...+.    ....-|++|+.||.|...+
T Consensus        71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            1 234569999999987 333322333333333221    1122399999999998755

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=7.4e-11  Score=103.12  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=112.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-------------cCCCCCcceeeEeEEEEee----CCeeEEEEeCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG   78 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG   78 (301)
                      ....++..|+-|-..|||||..+|+.....-+             .....+.|.+.+.....+.    ....+++|||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34568999999999999999999874321100             0112377777766655533    235789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~  158 (301)
                      .-|+.-       ++.+++..+    .+.++|+|++.+...+.....-..   +..+.  -++-|+||+|+...   ..+
T Consensus        86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlA---le~~L--eIiPViNKIDLP~A---dpe  146 (603)
T COG0481          86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLA---LENNL--EIIPVLNKIDLPAA---DPE  146 (603)
T ss_pred             ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHH---HHcCc--EEEEeeecccCCCC---CHH
Confidence            988754       566666666    889999999977766664433332   22343  68899999997655   222


Q ss_pred             HHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~  214 (301)
                      ....+     +..++..-....      ..+||++|.|++++++.|-..+|...+.
T Consensus       147 rvk~e-----Ie~~iGid~~da------v~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         147 RVKQE-----IEDIIGIDASDA------VLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             HHHHH-----HHHHhCCCcchh------eeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence            22222     333332111222      2379999999999999999988765443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=6.6e-10  Score=90.91  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=83.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCc-------H
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS-------E   87 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~-------~   87 (301)
                      ..+|+.||.+|.|||||+++|++-.. .+.++ ..-+++......+....   .-.++++||.||+|-..-+       +
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            37899999999999999999997664 33332 22233333332222111   2367999999999843221       1


Q ss_pred             HHHHHHHHHH----------hcc-CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188           88 FVGKEIVKCL----------GMA-KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK  155 (301)
Q Consensus        88 ~~~~~~~~~~----------~~~-~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~  155 (301)
                      .+..++..++          ..+ ..++|+.+|.+.++ +++...+...++.|...    +  ++|-++-|.|....  .
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk----V--NIIPvIAKaDtisK--~  192 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK----V--NIIPVIAKADTISK--E  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh----h--hhHHHHHHhhhhhH--H
Confidence            1222222222          111 35789999999887 66776776666665442    2  78888899997655  4


Q ss_pred             cHHHHhc
Q 022188          156 TLEDFLG  162 (301)
Q Consensus       156 ~~~~~~~  162 (301)
                      .+..|..
T Consensus       193 eL~~FK~  199 (406)
T KOG3859|consen  193 ELKRFKI  199 (406)
T ss_pred             HHHHHHH
Confidence            5554443

>PRK12740 elongation factor G; Reviewed

Probab=99.25  E-value=3.9e-11  Score=114.77  Aligned_cols=111  Identities=23%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             EcCCCCcHHHHHHHHhCCCCcccc---C-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188           25 LGRTGNGKSATGNSILGRKAFKAS---A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (301)
Q Consensus        25 vG~~g~GKStlin~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (301)
                      +|+.|+|||||+++|+...-....   .             ...+.|.......+. +++..+++|||||..++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHH------
Confidence            699999999999999543211000   0             012444444444444 68889999999997552      


Q ss_pred             HHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                       ..+....+    ..+|++++|+|++..........+..+... +.    |+++++||+|....
T Consensus        74 -~~~~~~~l----~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~~----p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -TGEVERAL----RVLDGAVVVVCAVGGVEPQTETVWRQAEKY-GV----PRIIFVNKMDRAGA  127 (668)
T ss_pred             -HHHHHHHH----HHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence             12333333    355999999999877776666666655442 32    89999999997644

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.25  E-value=6e-10  Score=96.41  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHH-HHHhhCccccCeEEEEEeC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk  146 (301)
                      +..+.||||+|......       .+   ..    .+|.++++++..   ++.+...+.. +.+.       .-++|+||
T Consensus       148 g~d~viieT~Gv~qs~~-------~i---~~----~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK  203 (332)
T PRK09435        148 GYDVILVETVGVGQSET-------AV---AG----MVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK  203 (332)
T ss_pred             CCCEEEEECCCCccchh-------HH---HH----hCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence            56889999999886321       11   22    349999987633   2333322221 2222       34899999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +|+...  .........     ++..+....       .+++      ..|+.++.|+++|++.+...++.
T Consensus       204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi------~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVL------TCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            998755  333333333     333333211       2333      37888899999999999988764

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=4.1e-11  Score=107.47  Aligned_cols=207  Identities=17%  Similarity=0.197  Sum_probs=132.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------------CCCcceeeEeEEEEeeCCeeEEEE
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------------SSGVTKTCEMKTTVLKDGQVVNVI   74 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~li   74 (301)
                      +.++.++|+++-+--+||||+-+.++-    ..+..                    ..+.|.......+. |....+.+|
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Ly----y~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~-w~~~~iNiI  109 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLY----YTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT-WRDYRINII  109 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeee----ecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-eccceeEEe
Confidence            334678999999999999999998762    22211                    11555555555444 889999999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~  154 (301)
                      ||||..|+..       ++.+++...    |+.++|+++..+........++.++.. +.    |.+..+||+|....  
T Consensus       110 DTPGHvDFT~-------EVeRALrVl----DGaVlvl~aV~GVqsQt~tV~rQ~~ry-~v----P~i~FiNKmDRmGa--  171 (721)
T KOG0465|consen  110 DTPGHVDFTF-------EVERALRVL----DGAVLVLDAVAGVESQTETVWRQMKRY-NV----PRICFINKMDRMGA--  171 (721)
T ss_pred             cCCCceeEEE-------Eehhhhhhc----cCeEEEEEcccceehhhHHHHHHHHhc-CC----CeEEEEehhhhcCC--
Confidence            9999999754       445555444    999999999878888888888887765 33    89999999999877  


Q ss_pred             ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh-hcCCC----CCchHHHHHHHHHHH
Q 022188          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV-QNGGQ----PYTDELKRGATELRD  229 (301)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~~~----~~~~~~~~~~~~~~~  229 (301)
                               .....+..+..++......+.-+.... ....|+-+|++...-... .+++.    ..+.++...+.+.  
T Consensus       172 ---------~~~~~l~~i~~kl~~~~a~vqiPig~e-~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~--  239 (721)
T KOG0465|consen  172 ---------SPFRTLNQIRTKLNHKPAVVQIPIGSE-SNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEK--  239 (721)
T ss_pred             ---------ChHHHHHHHHhhcCCchheeEcccccc-ccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHH--
Confidence                     222224455555554333333222221 123444444443221111 11111    2466677777664  


Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022188          230 KKAEVDSLKEYSKREISKLMGQMQESY  256 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (301)
                      +++.++.+.+.++...+.+.++.+...
T Consensus       240 R~~LIE~lad~DE~l~e~fLee~~ps~  266 (721)
T KOG0465|consen  240 RQALIETLADVDETLAEMFLEEEEPSA  266 (721)
T ss_pred             HHHHHHHHhhhhHHHHHHHhccCCCCH
Confidence            777788888888887777777665443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.24  E-value=4.6e-11  Score=88.11  Aligned_cols=159  Identities=14%  Similarity=0.077  Sum_probs=93.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ....+.++|-.++|||||+|.++......    ...+|+-.....+. ...-.+.+||.||-..+           ....
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~t-kgnvtiklwD~gGq~rf-----------rsmW   82 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRF-----------RSMW   82 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEec-cCceEEEEEecCCCccH-----------HHHH
Confidence            34789999999999999999987433211    11234333444433 45568899999995542           2223


Q ss_pred             hccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ..+++++++++||+|+++  .++..-.+....|....-  ...|++++.||.|..++  -.-.+.+.+ ..  +.    .
T Consensus        83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~A--L~~~~li~r-mg--L~----s  151 (186)
T KOG0075|consen   83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGA--LSKIALIER-MG--LS----S  151 (186)
T ss_pred             HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhh--cCCcEEEecccccCccc--ccHHHHHHH-hC--cc----c
Confidence            345789999999999983  232222222222222110  12399999999998765  222222222 00  11    1


Q ss_pred             cCCc-eEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..+| ++-|    ..|++...+++-+++|+.+.
T Consensus       152 itdREvcC~----siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  152 ITDREVCCF----SISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             cccceEEEE----EEEEcCCccHHHHHHHHHHH
Confidence            1122 1111    15777788999999998654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.23  E-value=3.6e-11  Score=100.32  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=100.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ...|+++|.||+|||||+++|++....+...  ...|.+..........|..+.+.||.||.+- .|     ..++.++.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP-----~~LvaAF~  249 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LP-----IQLVAAFQ  249 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhh-Cc-----HHHHHHHH
Confidence            3789999999999999999999776644331  1223332223334467899999999999862 22     23444443


Q ss_pred             cc---CCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCcc---ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           99 MA---KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        99 ~~---~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~---~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      .+   ...+|.++.|+|++++.....+ ..+..|.++ |-.   ....++=|-||+|....       +...        
T Consensus       250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~-------~~e~--------  313 (410)
T KOG0410|consen  250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEED-------EVEE--------  313 (410)
T ss_pred             HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccc-------cCcc--------
Confidence            32   2466999999999977766664 456666654 331   12245556777774432       1111        


Q ss_pred             HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                                .-++....|+.+|.|.+++++.++..+.
T Consensus       314 ----------E~n~~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  314 ----------EKNLDVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ----------ccCCccccccccCccHHHHHHHHHHHhh
Confidence                      0111334788899999999999887654

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2e-09  Score=98.16  Aligned_cols=117  Identities=23%  Similarity=0.343  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE----------------------------------------
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE----------------------------------------   59 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~----------------------------------------   59 (301)
                      .+|+|.|.+++||||++|+++.+.+.+++..+.   +.+-                                        
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~---TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHT---TNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHHhhCccccccc---ceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            689999999999999999999999888775432   1111                                        


Q ss_pred             ----eEEEEeeCC------eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHH
Q 022188           60 ----MKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP  129 (301)
Q Consensus        60 ----~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~  129 (301)
                          ...+.+.++      ..+.++|.||+.-..        +.-.++-.....+|++|+|+.+.+.++..++.++....
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs  258 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS  258 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence                111221122      367899999988643        34445555566789999999999888888888777665


Q ss_pred             HhhCccccCeEEEEEeCCCCCCC
Q 022188          130 NLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       130 ~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +-  +   .+++|+.||||....
T Consensus       259 ~~--K---pniFIlnnkwDasas  276 (749)
T KOG0448|consen  259 EE--K---PNIFILNNKWDASAS  276 (749)
T ss_pred             cc--C---CcEEEEechhhhhcc
Confidence            43  2   278899999997644

>cd01900 YchF YchF subfamily

Probab=99.23  E-value=6.5e-11  Score=99.79  Aligned_cols=87  Identities=18%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC----------------eeEEEEeCCCCCCCCCC
Q 022188           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~~~   85 (301)
                      |+|+|.+|+|||||+|+|++... ... ..++.|...........+.                ..+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~-n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccc-cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999999876 221 1223333333322221111                15899999999875444


Q ss_pred             cHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ...++..+...+.    .+|++++|+++.
T Consensus        79 ~~glg~~fL~~i~----~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIR----EVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHH----hCCEEEEEEeCc
Confidence            4445555555444    559999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.22  E-value=9.5e-11  Score=96.30  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|+.|+||||..+.|.+...+ ......+.|.......+.......+.+||.||..+...+..  ..+.    ...
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~--~~~~----~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF--NSQR----EEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH--TCCH----HHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc--cccH----HHH
Confidence            5899999999999999999976542 22233456666665554434566999999999876432200  0001    112


Q ss_pred             CCCccEEEEEEecC-CCCCHHHHH---HHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          101 KDGIHAFLVVFSVT-NRFSQEEET---AVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       101 ~~~~~~il~v~~~~-~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +.+++++|||+|+. ..+...-..   .+..+.+. ..++  ++.+++.|+|...+
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE  126 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH
Confidence            46779999999998 443333222   33333333 2233  89999999998755

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.22  E-value=2.4e-11  Score=116.76  Aligned_cols=119  Identities=17%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEe---eCCeeEEEEeCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVL---KDGQVVNVIDTPGL   79 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~---~~~~~~~liDtPG~   79 (301)
                      +..++|+|+|+.++|||||+.+|+...-......              ..+.|.......+.+   ..+..++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4568999999999999999999974321100000              012233332222221   13567899999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      .++.       .++...+.    .+|++++|+|+..+........+..+... +.    |.++++||+|...
T Consensus        98 ~df~-------~~~~~~l~----~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFG-------GDVTRAMR----AVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI  153 (731)
T ss_pred             cChH-------HHHHHHHH----hcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence            8842       24444444    44999999999877777777777765443 33    7789999999763

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=4.5e-09  Score=89.37  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------eC-------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KD-------------------   67 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~-------------------   67 (301)
                      ...-|+++|+-..||||||+.|+..........+.+.|......-...           .+                   
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            457899999999999999999998886433333333332222111000           00                   


Q ss_pred             ---------CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCcccc
Q 022188           68 ---------GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF  137 (301)
Q Consensus        68 ---------~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~  137 (301)
                               -..+++|||||+.+.....-.-.-.+...+.....++|.|++++|+. -.++.+-.+.+..|+   |.+- 
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed-  212 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED-  212 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc-
Confidence                     14789999999987543211111122333333456789999999998 445555566666665   3332 


Q ss_pred             CeEEEEEeCCCCCCC
Q 022188          138 DYMIVVFTGGDDLED  152 (301)
Q Consensus       138 ~~~ilv~nk~D~~~~  152 (301)
                       .+-||+||.|.++.
T Consensus       213 -kiRVVLNKADqVdt  226 (532)
T KOG1954|consen  213 -KIRVVLNKADQVDT  226 (532)
T ss_pred             -eeEEEeccccccCH
Confidence             78899999998876

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.21  E-value=3.7e-10  Score=98.62  Aligned_cols=176  Identities=16%  Similarity=0.265  Sum_probs=107.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      +.++|+|+-|...|||||+..|+.+.- |...             ....+.|.-..-..+. |++..++++||||.-|+-
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG   82 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG   82 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc
Confidence            458999999999999999999986542 1110             0011444443333334 889999999999999986


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC-ccccHHHHhc
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLG  162 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~  162 (301)
                      +       ++.+.++..    |++++++|+..+..++.+..++...+. |-    +-|+|+||+|.... +...+++.++
T Consensus        83 G-------EVERvl~MV----DgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp~~Vvd~vfD  146 (603)
T COG1217          83 G-------EVERVLSMV----DGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARPDEVVDEVFD  146 (603)
T ss_pred             c-------hhhhhhhhc----ceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCHHHHHHHHHH
Confidence            6       555555544    999999999978888887776655443 32    56789999998755 2122222111


Q ss_pred             ccCCchHHHHHHHcCCceEEecCCCcc----cccchhHHHHHHHHHHHHHhhcC
Q 022188          163 HECPKPLKEILQLCDNRCVLFDNKTKD----EAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      -  --.+..--+.+.+++..-+.....    ......++..|++.|.+.++...
T Consensus       147 L--f~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         147 L--FVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             H--HHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            1  000111112334444332222111    11223568889999988877543

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.20  E-value=8e-10  Score=89.04  Aligned_cols=161  Identities=24%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|.+|+|||++.....+......    ..+|....+......++  ..+.++||+|...+..           .
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~----y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~-----------~   67 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVED----YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA-----------M   67 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccc----cCCCccccceEEEEECCEEEEEEEEcCCCcccChH-----------H
Confidence            37899999999999999988887665222    22333222222222333  3668999999444321           1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...+....|++++|.+++++-+-++. .++..+....+. ..-|+++|.||+|+...-....++         -..+...
T Consensus        68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~  137 (196)
T KOG0395|consen   68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS  137 (196)
T ss_pred             HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence            12234556999999999977666663 344444333332 224999999999987531122221         1233344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +||+...++++++..+...+..
T Consensus       138 ~~~~f~E------~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  138 WGCAFIE------TSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cCCcEEE------eeccCCcCHHHHHHHHHHHHHh
Confidence            4444554      7887778999999888776554

>PRK13768 GTPase; Provisional

Probab=99.17  E-value=3.2e-10  Score=95.35  Aligned_cols=130  Identities=19%  Similarity=0.156  Sum_probs=74.1

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..+.+|||||....... ......+.+.+....  .+++++|+|+....+..+.....++..........|+++|+||+|
T Consensus        97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D  173 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD  173 (253)
T ss_pred             CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence            36899999997653321 223344555554322  799999999985555555433333321100011239999999999


Q ss_pred             CCCCccccHHHHhcccCC--------------------chHHHHHHHcC--CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          149 DLEDHEKTLEDFLGHECP--------------------KPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ....  ...+..... ..                    ..+-..+...+  .++++      .|+.++.++++|++++.+
T Consensus       174 ~~~~--~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~  244 (253)
T PRK13768        174 LLSE--EELERILKW-LEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQE  244 (253)
T ss_pred             hcCc--hhHHHHHHH-HhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHH
Confidence            8865  333332221 11                    00111222333  23344      667778999999999988


Q ss_pred             HHhh
Q 022188          207 VIVQ  210 (301)
Q Consensus       207 ~~~~  210 (301)
                      .++-
T Consensus       245 ~l~~  248 (253)
T PRK13768        245 VFCG  248 (253)
T ss_pred             HcCC
Confidence            8754

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=5.3e-10  Score=96.98  Aligned_cols=142  Identities=18%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh--CCCCccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (301)
                      ..++.+||-||.+|||||-..|+  |.-....|..                  ..++++...+..+. +.+..++|+|||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDTP   89 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDTP   89 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCCC
Confidence            45789999999999999998865  2111111110                  11555555555555 789999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH
Q 022188           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL  157 (301)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~  157 (301)
                      |..|++.       .-.+.+...    |..+.|+|+..++....+.+++.-+.. +  .  |++.++||+|....  ..+
T Consensus        90 GHeDFSE-------DTYRtLtAv----DsAvMVIDaAKGiE~qT~KLfeVcrlR-~--i--PI~TFiNKlDR~~r--dP~  151 (528)
T COG4108          90 GHEDFSE-------DTYRTLTAV----DSAVMVIDAAKGIEPQTLKLFEVCRLR-D--I--PIFTFINKLDREGR--DPL  151 (528)
T ss_pred             Cccccch-------hHHHHHHhh----heeeEEEecccCccHHHHHHHHHHhhc-C--C--ceEEEeeccccccC--ChH
Confidence            9999754       333444333    999999999988888887776654433 3  3  99999999998755  222


Q ss_pred             HHHhcccCCchHHHHHHHcCCceEEecCCC
Q 022188          158 EDFLGHECPKPLKEILQLCDNRCVLFDNKT  187 (301)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (301)
                      + .        +.++-..++..+++++-+.
T Consensus       152 E-L--------LdEiE~~L~i~~~PitWPI  172 (528)
T COG4108         152 E-L--------LDEIEEELGIQCAPITWPI  172 (528)
T ss_pred             H-H--------HHHHHHHhCcceecccccc
Confidence            2 1        3344445566666655443

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.15  E-value=2.4e-10  Score=83.79  Aligned_cols=163  Identities=19%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ++.....+|+++|-.++|||||++.|.++.+...-+.....+     ....+.....+++||.-|--.           +
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~-----k~v~~~g~f~LnvwDiGGqr~-----------I   75 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT-----KKVEYDGTFHLNVWDIGGQRG-----------I   75 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce-----EEEeecCcEEEEEEecCCccc-----------c
Confidence            344667999999999999999999999988633322222222     223323457899999988333           5


Q ss_pred             HHHHhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      ..+++.+|..+|++|||+|.++  ++........+.+.+.--..+  |+++.-||-|++..  ...++.-.. .      
T Consensus        76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v--pvlIfankQdllta--a~~eeia~k-l------  144 (185)
T KOG0074|consen   76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV--PVLIFANKQDLLTA--AKVEEIALK-L------  144 (185)
T ss_pred             chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc--ceeehhhhhHHHhh--cchHHHHHh-c------
Confidence            5667778889999999999763  333222333343333211123  89999999998765  444432221 1      


Q ss_pred             HHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      -+.....|...+.   .+++....++.+-.+|+..
T Consensus       145 nl~~lrdRswhIq---~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  145 NLAGLRDRSWHIQ---ECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             chhhhhhceEEee---eCccccccCccCcchhhhc
Confidence            1222233433322   2444455566665666543

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.9e-11  Score=88.30  Aligned_cols=160  Identities=13%  Similarity=0.079  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--------CCeeEEEEeCCCCCCCCCCcHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGSEFVGK   91 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~liDtPG~~~~~~~~~~~~~   91 (301)
                      ++.+.+|.+|+|||||+-..+.......-.+..++.-+.....+...        ....+.+|||.|.           +
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-----------E   78 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-----------E   78 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-----------H
Confidence            45788999999999999887755432221222222111111111111        1136789999992           2


Q ss_pred             HHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHh--hCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL--FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~--~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~  168 (301)
                      .+.......++.+-++++++|+++.-+-.. +.|+..|+-.  +..+   -++++.||+|+.+.  ..+.+..       
T Consensus        79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~P---DivlcGNK~DL~~~--R~Vs~~q-------  146 (219)
T KOG0081|consen   79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENP---DIVLCGNKADLEDQ--RVVSEDQ-------  146 (219)
T ss_pred             HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCC---CEEEEcCccchhhh--hhhhHHH-------
Confidence            333333445688899999999984443333 4566555543  2222   48888999997644  2222211       


Q ss_pred             HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+..+.+.+|+.      .||-++.++.+.++.+..++
T Consensus       147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv  180 (219)
T KOG0081|consen  147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV  180 (219)
T ss_pred             HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence            45678888999988      67777777777666665554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.14  E-value=5.2e-10  Score=100.20  Aligned_cols=175  Identities=16%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ...||+|+|..|+||||||-+|+.....+..+...+ ++.-   .... .......++||+.-.+.   ..    .+...
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advt-Pe~vpt~ivD~ss~~~~---~~----~l~~E   76 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVT-PENVPTSIVDTSSDSDD---RL----CLRKE   76 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccC-cCcCceEEEecccccch---hH----HHHHH
Confidence            348999999999999999999999887555433222 1111   1111 44556899999843321   11    22222


Q ss_pred             HhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                          .+.+|+++++...++  .+......||-.+++.+|.....|+|+|.||.|.......+++..+        ..++.
T Consensus        77 ----irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~--------~pim~  144 (625)
T KOG1707|consen   77 ----IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT--------LPIMI  144 (625)
T ss_pred             ----HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH--------HHHHH
Confidence                344599999987773  3444456788889999888778899999999998765323223211        11111


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~  219 (301)
                      .+.    ....-..+||+...++.+++....+.+-..-+..|..+
T Consensus       145 ~f~----EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~  185 (625)
T KOG1707|consen  145 AFA----EIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAE  185 (625)
T ss_pred             HhH----HHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccc
Confidence            110    11112237888888899998888777655444445433

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=8.4e-10  Score=96.19  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .|+-.|+--.|||||+.+++|...-. ......+.|.+...+... ..+..+.+||.||..+           ++..+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcHH-----------HHHHHHh
Confidence            58899999999999999999865411 112244677777776655 4455889999999766           3333444


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      ....+|..++|+++++++..+..+.+..|.. +|..   +.++++||+|..+.  ..+++.+.+        ++....  
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~--  133 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS--  133 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence            4567799999999988999998888877754 5764   78999999998876  556555544        333222  


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                       ..-.+....|+..+.|+++|.+.|..+.
T Consensus       134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         134 -LANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             -cccccccccccccCCCHHHHHHHHHHhh
Confidence             1111223478888999999999998887

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=2.1e-09  Score=78.81  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+.+|-.++||||++-.|.-...    . ..-+|+-..+..+. +.+..+.+||.-|-.           .+...+
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~----~-~~ipTvGFnvetVt-ykN~kfNvwdvGGqd-----------~iRplW   78 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS----V-TTIPTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW   78 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC----c-ccccccceeEEEEE-eeeeEEeeeeccCch-----------hhhHHH
Confidence            468999999999999999988863322    1 11223333333333 677889999998833           456667


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCC-ccccHHHHhcccCCchHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ..++++..++|||+|..++ ...+... ..|....+.+  -.-+++++.||-|+..+ .-.++.+++.-          +
T Consensus        79 rhYy~gtqglIFV~Dsa~~-dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL----------e  146 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADR-DRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL----------E  146 (180)
T ss_pred             HhhccCCceEEEEEeccch-hhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc----------c
Confidence            7788999999999998844 2222111 1222222222  11278888999998765 11333333332          1


Q ss_pred             Hc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .. +.++++    .++++.++.++.+=+.|+...+
T Consensus       147 ~~r~~~W~v----qp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  147 RIRDRNWYV----QPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             cccCCccEe----eccccccchhHHHHHHHHHhhc
Confidence            12 223333    2356667888888888876644

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=5.4e-09  Score=76.64  Aligned_cols=157  Identities=17%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+.+|+|.-|+|||.|+..++.+.....-+  ....+......+. ..+  ..+.+|||.|.           +.+...
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcp--htigvefgtriie-vsgqkiklqiwdtagq-----------erfrav   76 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIE-VSGQKIKLQIWDTAGQ-----------ERFRAV   76 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCC--cccceecceeEEE-ecCcEEEEEEeecccH-----------HHHHHH
Confidence            4688999999999999999998766532221  1112221111122 333  36799999992           233344


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...+++++.+.++|.|++.+-+-.. ..|+.-.+.+-..+  .-++++.||.|+....+...++         .+.+.+.
T Consensus        77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faee  145 (215)
T KOG0097|consen   77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEE  145 (215)
T ss_pred             HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhh
Confidence            4556899999999999983333332 23444444432222  1466789999975432233332         2334444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .|.-...      .|++++.++++.+-...+
T Consensus       146 ngl~fle------~saktg~nvedafle~ak  170 (215)
T KOG0097|consen  146 NGLMFLE------ASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             cCeEEEE------ecccccCcHHHHHHHHHH
Confidence            3433333      678888888875544333

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.2e-09  Score=105.30  Aligned_cols=230  Identities=17%  Similarity=0.176  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCC----CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC----CcHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-AGS----SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEFVG   90 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~----~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~~   90 (301)
                      +-.+|||++|+||||++... |...+-.. ...    ...|..     +.++-+..-++|||.|-+-...    .+..-+
T Consensus       126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~-----cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRN-----CDWWFTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcc-----cCcccccceEEEcCCcceecccCcchhhHHHH
Confidence            34799999999999988653 33221111 110    111333     3456677889999999776553    233344


Q ss_pred             HHHHHHHhcc--CCCccEEEEEEecCCCC--CHHH--------HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188           91 KEIVKCLGMA--KDGIHAFLVVFSVTNRF--SQEE--------ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (301)
Q Consensus        91 ~~~~~~~~~~--~~~~~~il~v~~~~~~~--~~~~--------~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~  158 (301)
                      .-+...++..  .+.+|+||+.+++.+-.  +..+        +.+++.+.+.++...  |+++++||.|++    ..++
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll----~GF~  273 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLL----PGFE  273 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccc----ccHH
Confidence            5566666654  46789999999997322  2222        234666777777766  999999999998    4477


Q ss_pred             HHhcccCCchHHHHHHHcCCceEEecCCCcc--cccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhHHHHHH
Q 022188          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKD--EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDS  236 (301)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      +|... .++..+   +..-+-.++++.....  -+.-...+..|.+.+...+..        .+.+              
T Consensus       274 efF~~-l~~~~r---~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~--------rl~~--------------  327 (1188)
T COG3523         274 EFFGS-LNKEER---EQVWGVTFPLDARRNANLAAELEQEFRLLLDRLNAQLVE--------RLQQ--------------  327 (1188)
T ss_pred             HHHhc-cCHHHH---hhhceeccccccccccchHHHHHHHHHHHHHHHHHHHHH--------HHHh--------------
Confidence            77775 433222   2222333343332210  001112223333333322221        0000              


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCccccc
Q 022188          237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNC  295 (301)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (301)
                             +........--.+.+++..+.+.+.+.++.+.-. .+......-+|.||||-
T Consensus       328 -------e~~~~~R~~l~~Fp~q~~~l~~~l~~~le~lf~~-~~~~~~~~LRG~yftS~  378 (1188)
T COG3523         328 -------ERDLEQRGRLLSFPRQLAGLRERLREFLEGLFDA-SPYQENPLLRGLYFTSA  378 (1188)
T ss_pred             -------cccHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcc-Chhhccceeeeeeeccc
Confidence                   0000001111225566667777777777777653 47778889999999985

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.08  E-value=2.4e-09  Score=88.38  Aligned_cols=106  Identities=21%  Similarity=0.147  Sum_probs=64.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      +...|+|+|++++|||||+|.|+|. ..|..+......|...-.......  .+..+.++||||+.+....... .....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~-~~~~~   84 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFE-DDARL   84 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchh-hhhHH
Confidence            4468999999999999999999998 356655544444544333322211  3578999999999987654301 11112


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL  128 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l  128 (301)
                      .++...  -.+++||.++..  ........+..+
T Consensus        85 ~~l~~l--lss~~i~n~~~~--~~~~~~~~l~~~  114 (224)
T cd01851          85 FALATL--LSSVLIYNSWET--ILGDDLAALMGL  114 (224)
T ss_pred             HHHHHH--HhCEEEEeccCc--ccHHHHHHHHHH
Confidence            222210  128888887765  334444444433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=3.7e-09  Score=94.90  Aligned_cols=140  Identities=19%  Similarity=0.274  Sum_probs=91.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEeEEEEeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~~   68 (301)
                      .....+++|+..+|||||+-.|+-..-..              .|               ....++|.......+. ...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~~  254 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SKS  254 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cCc
Confidence            45789999999999999998875221100              00               0111556655555554 567


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-CCCCH------HHHHHHHHHHHhhCccccCeEE
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQ------EEETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~------~~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      ..++|+|+||..++..       .+..    ....+|+.++|+|++ +.|..      +.++.. .+...+|..   .++
T Consensus       255 ~~~tliDaPGhkdFi~-------nmi~----g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi~---qli  319 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIP-------NMIS----GASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGIS---QLI  319 (603)
T ss_pred             eeEEEecCCCccccch-------hhhc----cccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCcc---eEE
Confidence            7899999999777532       2222    234569999999998 32221      233443 444456754   899


Q ss_pred             EEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcCC
Q 022188          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN  178 (301)
Q Consensus       142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  178 (301)
                      |++||+|...-+...+++....     +..++ ..||+
T Consensus       320 vaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~gf  352 (603)
T KOG0458|consen  320 VAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCGF  352 (603)
T ss_pred             EEeecccccCccHHHHHHHHHH-----HHHHHHHhcCc
Confidence            9999999987655777776665     77776 66763

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=4e-10  Score=85.68  Aligned_cols=167  Identities=16%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc-cC--CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-SA--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...|+|+|.-+||||||+.++-....-.. +.  +...+|+........ .....+.+||.-|-.           ...+
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgGQe-----------~lrS   84 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGGQE-----------SLRS   84 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCChH-----------HHHH
Confidence            36799999999999999987643221111 11  111223333333333 557789999998821           2222


Q ss_pred             HHhccCCCccEEEEEEecCC--CCCHHHHHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ....+|..+|+++|++|+.+  |+.... ..++.+ ..-.-..+  |++++.||-|....  .+..+.-.     .+.. 
T Consensus        85 lw~~yY~~~H~ii~viDa~~~eR~~~~~-t~~~~v~~~E~leg~--p~L~lankqd~q~~--~~~~El~~-----~~~~-  153 (197)
T KOG0076|consen   85 LWKKYYWLAHGIIYVIDATDRERFEESK-TAFEKVVENEKLEGA--PVLVLANKQDLQNA--MEAAELDG-----VFGL-  153 (197)
T ss_pred             HHHHHHHHhceeEEeecCCCHHHHHHHH-HHHHHHHHHHHhcCC--chhhhcchhhhhhh--hhHHHHHH-----Hhhh-
Confidence            33345677799999999984  333222 222222 21111123  99999999997655  33332111     1221 


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+..+.|..+|.   ++|+..+.|+.+-+.|+...++.+
T Consensus       154 ~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  154 AELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence            333344544444   478888999999999998888765

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.07  E-value=2.7e-09  Score=90.34  Aligned_cols=142  Identities=12%  Similarity=0.151  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc--cc------cCC-----------------------CCCcceeeEeEEEEee
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAF--KA------SAG-----------------------SSGVTKTCEMKTTVLK   66 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~--~~------~~~-----------------------~~~~t~~~~~~~~~~~   66 (301)
                      ..+|++-+|...-||||||-+|+-....  +.      ..+                       ..+.|....+..+. -
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-T   83 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-T   83 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-c
Confidence            4589999999999999999998754321  00      000                       01667766655444 4


Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      ..+.+.+.||||..           ++.+-+..-..-+|+.++++|+..++-.+.++ -..+..++|..   ++++.+||
T Consensus        84 ~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK  148 (431)
T COG2895          84 EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK  148 (431)
T ss_pred             ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence            67789999999933           23333333344569999999998666555544 45667778876   89999999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (301)
                      +|+.+-+.+.+++...+     +..+....+...
T Consensus       149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~  177 (431)
T COG2895         149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKD  177 (431)
T ss_pred             ecccccCHHHHHHHHHH-----HHHHHHHcCCCc
Confidence            99986655677777666     667777777543

>cd01858 NGP_1 NGP-1

Probab=99.06  E-value=4.7e-10  Score=87.64  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ..+|+++|.+|+|||||+|+|.+.....++..+ +.|+.....    ..+..+.++||||+
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYI----TLMKRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEE----EcCCCEEEEECcCC
Confidence            478999999999999999999998775554332 334433322    22345899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=6.2e-09  Score=89.55  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-----------------CCeeEEEEeCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL   82 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~   82 (301)
                      .+++|||.||+|||||+|+++....  .....+.+|...........                 -.-.+.++|.+|+-..
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            6799999999999999999997663  22222334444332221111                 1136789999998765


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ....+-++.++..-+.    .+|+++.|+++.
T Consensus        81 As~GeGLGNkFL~~IR----evdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence            4444455666666554    559999999987

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.03  E-value=1.9e-10  Score=88.64  Aligned_cols=62  Identities=31%  Similarity=0.315  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcc-eeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (301)
                      .+++++|++|||||||+|+|++.....++..     ....| +....+.   . .....|||||||.++...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~---l-~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP---L-PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE---E-TTSEEEECSHHHHT--GC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe---c-CCCcEEEECCCCCccccc
Confidence            7899999999999999999999865544321     11223 3333332   2 234589999999887654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.1e-09  Score=92.60  Aligned_cols=141  Identities=20%  Similarity=0.305  Sum_probs=96.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCCCcccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      +.++|+|+.+..+||||...+|+   |.......             ....+.|.......+. |.|..+.+|||||.-|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-wkg~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-WKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-cccceEeeecCCCcce
Confidence            35799999999999999998875   21110000             1112667777666655 9999999999999988


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                      +..       ++.+++...    |+++.|+|++.+........|+.... |  .+  |.+.++||+|....   .++   
T Consensus       115 f~l-------everclrvl----dgavav~dasagve~qtltvwrqadk-~--~i--p~~~finkmdk~~a---nfe---  172 (753)
T KOG0464|consen  115 FRL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADK-F--KI--PAHCFINKMDKLAA---NFE---  172 (753)
T ss_pred             EEE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhccc-c--CC--chhhhhhhhhhhhh---hhh---
Confidence            754       455555544    99999999997777777666655433 2  22  89999999997755   222   


Q ss_pred             cccCCchHHHHHHHcCCceEEecCC
Q 022188          162 GHECPKPLKEILQLCDNRCVLFDNK  186 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~  186 (301)
                           -++..+-++.+.+...+.-+
T Consensus       173 -----~avdsi~ekl~ak~l~l~lp  192 (753)
T KOG0464|consen  173 -----NAVDSIEEKLGAKALKLQLP  192 (753)
T ss_pred             -----hHHHHHHHHhCCceEEEEec
Confidence                 22555667777776555443

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.02  E-value=3.4e-10  Score=86.34  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..++++|+|..++||||+|.+.+.... ..+. .....+..-..... ...+..+.+|||.|..           ++-.
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgif-Tkdy-kktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDa   84 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDY-KKTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDA   84 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhcccc-cccc-ccccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHH
Confidence            3457899999999999999999984332 2221 11111110000000 0123355799999933           3333


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+|+++.+.++|++.+++.+-+. ..+.+.+..-.+. +  |.++|-||+|+.+.  ..+..       .....+..
T Consensus        85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-I--PtV~vqNKIDlved--s~~~~-------~evE~lak  152 (246)
T KOG4252|consen   85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-I--PTVFVQNKIDLVED--SQMDK-------GEVEGLAK  152 (246)
T ss_pred             HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-C--CeEEeeccchhhHh--hhcch-------HHHHHHHH
Confidence            33456899999999999997777665 4555566655554 3  99999999998765  22211       11233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ....|.+.      .|.+..-++...+..+...
T Consensus       153 ~l~~RlyR------tSvked~NV~~vF~YLaeK  179 (246)
T KOG4252|consen  153 KLHKRLYR------TSVKEDFNVMHVFAYLAEK  179 (246)
T ss_pred             Hhhhhhhh------hhhhhhhhhHHHHHHHHHH
Confidence            44555554      5666666777766666543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=2.6e-09  Score=89.29  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=99.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEe-------------------------eCCeeEE
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-------------------------KDGQVVN   72 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~-------------------------~~~~~~~   72 (301)
                      ..+|+.+||...|||||..+|+|.-.-. +.....+.|.+..+.....                         .--+.+.
T Consensus        10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS   89 (415)
T COG5257          10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS   89 (415)
T ss_pred             ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence            4899999999999999999999854311 1111112222221111000                         0125788


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      ++|.||..-           +...+.+-..--|+.++|+.++.+.-.. .++-|..| +..|..   +++++=||+|+.+
T Consensus        90 fVDaPGHe~-----------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDlV~  154 (415)
T COG5257          90 FVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDLVS  154 (415)
T ss_pred             EeeCCchHH-----------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccceec
Confidence            999999221           1222222222349999999998554333 34444433 344554   8999999999876


Q ss_pred             CccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          152 DHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .  +...+...+     +++++...   +.++++      .||..+.+++.|++.|.+.++.
T Consensus       155 ~--E~AlE~y~q-----Ik~FvkGt~Ae~aPIIP------iSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         155 R--ERALENYEQ-----IKEFVKGTVAENAPIIP------ISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             H--HHHHHHHHH-----HHHHhcccccCCCceee------ehhhhccCHHHHHHHHHHhCCC
Confidence            5  333333332     44444322   234444      8888999999999999998875

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.01  E-value=9e-10  Score=86.95  Aligned_cols=56  Identities=32%  Similarity=0.415  Sum_probs=41.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ..+++++|.+|+|||||+|+|+|.....++.. ++.|...+...   . +..+.++||||+
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~---~-~~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH---L-DKKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE---e-CCCEEEEECcCC
Confidence            47999999999999999999999887555433 34454443322   2 346899999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=9.1e-09  Score=85.06  Aligned_cols=171  Identities=17%  Similarity=0.221  Sum_probs=106.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC---------ccccC-----CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA---------FKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~---------~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      +..+|+.+|+...|||||..+|++.-.         +....     ...+.|.......+. ...+.+..+|+||.-|  
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD--   87 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD--   87 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH--
Confidence            448999999999999999999875321         11110     122555555444444 4677889999999555  


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                           ..+.++...    -..|+.|+|+.++++..++.++-+-..++ .|.+   .+++++||+|..+.  .++-+.++.
T Consensus        88 -----YvKNMItgA----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelVem  152 (394)
T COG0050          88 -----YVKNMITGA----AQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELVEM  152 (394)
T ss_pred             -----HHHHHhhhH----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHHHH
Confidence                 122222222    24499999999987777777765544444 4654   57888999999876  555554443


Q ss_pred             cCCchHHHHHHHcCCc--eEEecCCCc-----ccccchhHHHHHHHHHHHHHhh
Q 022188          164 ECPKPLKEILQLCDNR--CVLFDNKTK-----DEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                          .+++++...+.+  ..++-....     ..+.....+.+|++.++..++.
T Consensus       153 ----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         153 ----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             ----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence                267788777643  222211111     1112235577888888777654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.98  E-value=1.3e-07  Score=81.77  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.|+||||......          ..+    ..+|.++++....   +..+...+.  ......    |.++++||+
T Consensus       126 g~D~viidT~G~~~~e~----------~i~----~~aD~i~vv~~~~---~~~el~~~~--~~l~~~----~~ivv~NK~  182 (300)
T TIGR00750       126 GYDVIIVETVGVGQSEV----------DIA----NMADTFVVVTIPG---TGDDLQGIK--AGLMEI----ADIYVVNKA  182 (300)
T ss_pred             CCCEEEEeCCCCchhhh----------HHH----HhhceEEEEecCC---ccHHHHHHH--HHHhhh----ccEEEEEcc
Confidence            57789999999765211          111    2237777774332   223322211  122222    789999999


Q ss_pred             CCCCCccccHHHHhcccCCchHHHHHHH---cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          148 DDLEDHEKTLEDFLGHECPKPLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      |....  ......... ....+..+...   +..+++      .+|+.++.++++|++++.....
T Consensus       183 Dl~~~--~~~~~~~~~-~~~~l~~l~~~~~~~~~~v~------~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       183 DGEGA--TNVTIARLM-LALALEEIRRREDGWRPPVL------TTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             cccch--hHHHHHHHH-HHHHHhhccccccCCCCCEE------EEEccCCCCHHHHHHHHHHHHH
Confidence            98755  221110000 00001111111   112233      3788899999999999987654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.97  E-value=8.8e-09  Score=100.81  Aligned_cols=107  Identities=15%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCCCCCCCC
Q 022188           23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        23 ~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~   85 (301)
                      +|+++    ||||+.+|.+-.+...  -..+.|.+...+.+.....                 ..+.+|||||...+   
T Consensus       469 ~~~~~----KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F---  539 (1049)
T PRK14845        469 GILVH----NTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF---  539 (1049)
T ss_pred             eeecc----cccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH---
Confidence            45554    9999999999887333  3457787776665442211                 13799999995432   


Q ss_pred             cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                              .......+..+|++++|+|+++++.......+..+... +  .  |+++++||+|...
T Consensus       540 --------~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~--i--PiIVViNKiDL~~  592 (1049)
T PRK14845        540 --------TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K--T--PFVVAANKIDLIP  592 (1049)
T ss_pred             --------HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C--C--CEEEEEECCCCcc
Confidence                    11122235667999999999877888887777776653 3  2  8999999999863

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.97  E-value=6.9e-10  Score=80.52  Aligned_cols=156  Identities=12%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188           24 LLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (301)
Q Consensus        24 lvG~~g~GKStlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
                      ++|.+++|||.|+-+.-.... -.+  .+..++..+....... .....+.+|||.|.           +.+......+|
T Consensus         2 llgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~-~~kvklqiwdtagq-----------erfrsvt~ayy   68 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQ-----------ERFRSVTHAYY   68 (192)
T ss_pred             ccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccC-CcEEEEEEeeccch-----------HHHhhhhHhhh
Confidence            689999999998744321111 111  1122222222222111 12246799999992           23444445578


Q ss_pred             CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188          102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (301)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (301)
                      +.+|+++++.|+.++.+-.. +.|+..+.+.....+  .++++.||+|....      ..+..+.   -..+.+..+.+.
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~dd---g~kla~~y~ipf  137 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRDD---GEKLAEAYGIPF  137 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccch---HHHHHHHHCCCc
Confidence            99999999999997777766 567888888655545  68899999997543      1111111   234445556555


Q ss_pred             EEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..      .|++++-+++..+-.|.+.+.
T Consensus       138 me------tsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen  138 ME------TSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ee------ccccccccHhHHHHHHHHHHH
Confidence            54      889999999988777765544

>PTZ00099 rab6; Provisional

Probab=98.96  E-value=2e-08  Score=79.90  Aligned_cols=114  Identities=20%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      ..+.+|||||...           +......+++++|++|+|+|++++-+-.. ..++..+....+...  |+++|.||+
T Consensus        29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~--piilVgNK~   95 (176)
T PTZ00099         29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDV--IIALVGNKT   95 (176)
T ss_pred             EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECc
Confidence            4678999999543           22223345678899999999985433333 345554544333333  899999999


Q ss_pred             CCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      |+........++         ........+..++.      +||+++.++.+++++|...++.
T Consensus        96 DL~~~~~v~~~e---------~~~~~~~~~~~~~e------~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         96 DLGDLRKVTYEE---------GMQKAQEYNTMFHE------TSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ccccccCCCHHH---------HHHHHHHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence            975331011111         12233333444444      8999999999999999988765

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.94  E-value=7.5e-09  Score=81.98  Aligned_cols=163  Identities=20%  Similarity=0.157  Sum_probs=101.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-Ce--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .++++|||..++|||+++-..+.. .|+..-   .+|+..........+ +.  .+.+|||.|..+.+        . .+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------r-lR   70 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------R-LR   70 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccC-cCcccc---cCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------c-cc
Confidence            378999999999999999888754 344432   334443333223343 54  56899999977642        1 11


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC-----Cch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~  168 (301)
                        ..+|+..|+|++++++.++.+-+.  ..|+-.++..++. +  |+++|.+|.|+-+.  ....+.+....     ...
T Consensus        71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~  143 (198)
T KOG0393|consen   71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ  143 (198)
T ss_pred             --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence              347899999999999986666554  5577777776643 3  99999999997644  21211221100     011


Q ss_pred             HHHHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          169 LKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       169 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ...+....| .+++.      +|+....++.+.++.....
T Consensus       144 g~~lA~~iga~~y~E------cSa~tq~~v~~vF~~a~~~  177 (198)
T KOG0393|consen  144 GLELAKEIGAVKYLE------CSALTQKGVKEVFDEAIRA  177 (198)
T ss_pred             HHHHHHHhCcceeee------ehhhhhCCcHHHHHHHHHH
Confidence            233444445 34444      6777777777777665443

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.94  E-value=4.1e-08  Score=87.55  Aligned_cols=131  Identities=18%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------------------------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---------------------------------------------   52 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~---------------------------------------------   52 (301)
                      .-++|+|||.-.+||||.+.++.....|+-|.+.-                                             
T Consensus       307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R  386 (980)
T KOG0447|consen  307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR  386 (980)
T ss_pred             cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence            34899999999999999999999988888764322                                             


Q ss_pred             -------CcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHH
Q 022188           53 -------GVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE  120 (301)
Q Consensus        53 -------~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  120 (301)
                             +.|+...+.... +.|   ..++++|.||+..+...  ..+....+......+...|++||+|+.-. ....+
T Consensus       387 Mr~sVr~GkTVSnEvIslt-VKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE  464 (980)
T KOG0447|consen  387 MRKNVKEGCTVSPETISLN-VKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE  464 (980)
T ss_pred             HHhcccCCcccccceEEEe-ecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence                   445554444443 333   46799999999875532  24445566666666678999999999654 33333


Q ss_pred             HHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       121 ~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      -...-..+.+.-  +.-+..|+|+||.|+++.
T Consensus       465 RSnVTDLVsq~D--P~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  465 RSIVTDLVSQMD--PHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhHHHHHHhcC--CCCCeeEEEEeecchhhh
Confidence            222223333331  122379999999998754

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=7.2e-09  Score=95.12  Aligned_cols=173  Identities=17%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------eCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~   81 (301)
                      .+.++|+||..+|||-|+..|-+.++....  ..+.|.......+..                 ..-..+.+|||||...
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            467999999999999999999988774433  233443333221110                 1124678999999554


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC----ccccH
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----HEKTL  157 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----~~~~~  157 (301)
                      +           .+.-.....-+|.+|+|+|+.+++.+.....+..|+..   ..  |+||.+||+|.+..    +...+
T Consensus       553 F-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~i  616 (1064)
T KOG1144|consen  553 F-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAPI  616 (1064)
T ss_pred             h-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCchH
Confidence            3           11111123345999999999999999998888888765   33  99999999998733    22233


Q ss_pred             HHHhcc-------cCCchHHHHHHHc---CCceE-Eec--------CCCcccccchhHHHHHHHHHHHHHh
Q 022188          158 EDFLGH-------ECPKPLKEILQLC---DNRCV-LFD--------NKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       158 ~~~~~~-------~~~~~l~~~~~~~---~~~~~-~~~--------~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+.+..       +|...+..++..+   |.... .|.        ...+.||..|.|+.+|+-+|..+..
T Consensus       617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            222211       1111233333222   21111 122        2346788899999999998877654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.93  E-value=2.6e-09  Score=83.18  Aligned_cols=57  Identities=26%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ...+++++|.+|+|||||+|+|++......+.. .+.|......  .  .+..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence            458899999999999999999999776443322 2333333322  2  2356899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.93  E-value=3.5e-09  Score=81.08  Aligned_cols=58  Identities=29%  Similarity=0.426  Sum_probs=40.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..+++++|.+|+|||||+|+|++....... ...+.|.+....  . .+ ..+.+|||||+..
T Consensus        83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~--~-~~-~~~~i~DtpG~~~  140 (141)
T cd01857          83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTI--F-LT-PTITLCDCPGLVF  140 (141)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEE--E-eC-CCEEEEECCCcCC
Confidence            348999999999999999999998764322 223344443322  2 22 3689999999853

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.91  E-value=2.4e-09  Score=86.37  Aligned_cols=57  Identities=28%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~------~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ..+++++|.+|+|||||+|+|++......      ..+. ++.|........    +..+.||||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            36899999999999999999998654321      2222 234444333221    225799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.4e-08  Score=80.16  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ..|.++|+.++|||+|+-.|.-.....+..     +.......+. .+...+++||.||...       +...+...+..
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r-~gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYR-LGSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEe-ecCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            679999999999999997776433211111     1111111112 3445579999999554       34455555443


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCc----cccCeEEEEEeCCCCCCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK----NVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ilv~nk~D~~~~  152 (301)
                      . ..+-++++|+|.. -+...-+..-++|...+..    .-.-|+++.-||-|+..+
T Consensus       106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            2 4678999999987 4444444333333332211    112289999999998765

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=4.2e-08  Score=82.88  Aligned_cols=162  Identities=17%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC---ccccC--CCCCcceeeEeEEEEee--------CCeeEEEEeCCCCCCCCCCc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKA---FKASA--GSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~---~~~~~--~~~~~t~~~~~~~~~~~--------~~~~~~liDtPG~~~~~~~~   86 (301)
                      .+++|+|+..+|||||.++|....-   |+..+  ...+.|.+.........        ..-.+++||+||...     
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas-----   82 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS-----   82 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence            8899999999999999999864321   11111  11233333222222211        123569999999544     


Q ss_pred             HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc--cccHHHHhccc
Q 022188           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHE  164 (301)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~  164 (301)
                            +++.+.....-+|..++|+|+..+......+.+-.- +.+-.    +.++|+||+|...++  ...++..-.. 
T Consensus        83 ------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-~~~c~----klvvvinkid~lpE~qr~ski~k~~kk-  150 (522)
T KOG0461|consen   83 ------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-ELLCK----KLVVVINKIDVLPENQRASKIEKSAKK-  150 (522)
T ss_pred             ------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-hhhcc----ceEEEEeccccccchhhhhHHHHHHHH-
Confidence                  333333345566999999999866555554444332 22222    688999999987541  1223332222 


Q ss_pred             CCchHHHHHHHcC----CceEEecCCCcccccch----hHHHHHHHHHHHHH
Q 022188          165 CPKPLKEILQLCD----NRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVI  208 (301)
Q Consensus       165 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~L~~~l~~~~  208 (301)
                          ++.-++..+    .++++      .++.+|    ..+.+|.+.+...+
T Consensus       151 ----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  151 ----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             ----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhh
Confidence                444444333    23444      455555    78888888887654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.89  E-value=9.7e-09  Score=88.13  Aligned_cols=66  Identities=27%  Similarity=0.358  Sum_probs=47.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (301)
                      ...+++|+|.+|+|||||+|+|+|.....++. ..+.|...+..    .-+..+.++||||+..+...+..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~----~~~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWI----KLGKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEE----EeCCcEEEEECCCcCCCCCCcHH
Confidence            45789999999999999999999988754443 23445554322    22356899999999876654443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.89  E-value=1.4e-08  Score=82.22  Aligned_cols=89  Identities=20%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .-||+++|.|.+|||||+..|+.-.   +.......|+-........+++-.+.++|.||+........--+++.+    
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~---SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvi----  134 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTH---SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVI----  134 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcch---hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEE----
Confidence            3699999999999999999999643   333334445544455555588999999999998765433222222322    


Q ss_pred             ccCCCccEEEEEEecC
Q 022188           99 MAKDGIHAFLVVFSVT  114 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~  114 (301)
                      ...+.+|.+++|+|++
T Consensus       135 avArtaDlilMvLDat  150 (364)
T KOG1486|consen  135 AVARTADLILMVLDAT  150 (364)
T ss_pred             EEeecccEEEEEecCC
Confidence            2346679999999998

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.88  E-value=4.3e-07  Score=81.15  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCC-----------CcceeeEeEEEEe-e-------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-----------GVTKTCEMKTTVL-K-------------   66 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~-----------~~t~~~~~~~~~~-~-------------   66 (301)
                      +...|+++|++|+||||++..|.      |..+.-....+.           ........+.... .             
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            34789999999999999999986      443321111110           0000011111000 0             


Q ss_pred             --CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           67 --DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        67 --~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                        .+..+.||||||...   .+.....++.....  ...|+.+++|+|+..+.  ......+.+.+..+     +.-+|+
T Consensus       179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~--~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~-----~~g~Il  246 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAE--AIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVD-----VGSVII  246 (429)
T ss_pred             HhCCCCEEEEECCCCCc---chHHHHHHHHHHhh--hcCCcEEEEEeccccCh--hHHHHHHHHHhccC-----CcEEEE
Confidence              256889999999765   34455566665543  33678999999987332  22334455544322     577999


Q ss_pred             eCCCCCCC
Q 022188          145 TGGDDLED  152 (301)
Q Consensus       145 nk~D~~~~  152 (301)
                      ||+|....
T Consensus       247 TKlD~~ar  254 (429)
T TIGR01425       247 TKLDGHAK  254 (429)
T ss_pred             ECccCCCC
Confidence            99997644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.88  E-value=1.8e-08  Score=82.82  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=80.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC---cHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGK   91 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~   91 (301)
                      .....+++++|.+|+|||||+|.++...... ++.+..+.|...+.+    .-+..++++|.||+....-.   ..+...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCCccCcchHhH
Confidence            4456899999999999999999998766532 222233444443332    34678999999995432211   111111


Q ss_pred             HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ....++. .....=.+++.+|++.++...+...+.++-+.   .+  |+.+|+||+|....
T Consensus       209 ~t~~Y~l-eR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  209 FTKSYLL-ERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK  263 (320)
T ss_pred             hHHHHHH-hhhhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence            1111221 12233445666788778888888888887764   44  99999999997643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.86  E-value=9e-09  Score=90.10  Aligned_cols=62  Identities=24%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cc-ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (301)
                      ..++|+|++|+|||||+|+|++.....++..+.     -. |+....+.+.  .+  ..|+||||+..+...
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l~  273 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGLW  273 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccCC
Confidence            358999999999999999999987765553322     12 3343333321  22  369999999886543

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.85  E-value=4.1e-08  Score=73.19  Aligned_cols=123  Identities=18%  Similarity=0.117  Sum_probs=73.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-CCCCccccCCCCCcceeeEe-EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~-g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      ....+|+++|.-++|||+++..|+ |..+..+.   ...|...-+ ..+.+..  ...+.+.||.|+.+..   .    +
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----e   76 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----E   76 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCch---h----h
Confidence            355789999999999999998765 43332211   222333222 2222222  3478999999988741   1    2


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +-+   .+..-+|++++|.+..++-+-.-...++.-.+........|++++.|+.|..+.
T Consensus        77 Lpr---hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   77 LPR---HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             hhH---hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence            222   234456999999988743333333333332233333334499999999998755

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.85  E-value=1e-07  Score=76.91  Aligned_cols=73  Identities=25%  Similarity=0.196  Sum_probs=45.2

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.+|||||....   +.....++..++...  .++-+++|++++..  ..+...+....+.++     +--+++||.
T Consensus        83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl  150 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL  150 (196)
T ss_dssp             TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred             CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence            356899999997763   344455565555433  67889999999832  333334444444443     345779999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       151 Det~~  155 (196)
T PF00448_consen  151 DETAR  155 (196)
T ss_dssp             TSSST
T ss_pred             cCCCC
Confidence            97644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=3.1e-08  Score=90.10  Aligned_cols=117  Identities=23%  Similarity=0.320  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------CCcceeeEeEEEEee----CCeeEEEEeCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------SGVTKTCEMKTTVLK----DGQVVNVIDTPG   78 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~~~liDtPG   78 (301)
                      ..++|+++|+-++|||+|+..|.+..........               .+.+.+.........    ...-++++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            3578999999999999999999877653221100               122222222222211    234679999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      .-++.       .+....+..+    |++++|+|+..+..-...+.++...+.   ..  |+++++||+|.+
T Consensus       207 HVnF~-------DE~ta~l~~s----DgvVlvvDv~EGVmlntEr~ikhaiq~---~~--~i~vviNKiDRL  262 (971)
T KOG0468|consen  207 HVNFS-------DETTASLRLS----DGVVLVVDVAEGVMLNTERIIKHAIQN---RL--PIVVVINKVDRL  262 (971)
T ss_pred             cccch-------HHHHHHhhhc----ceEEEEEEcccCceeeHHHHHHHHHhc---cC--cEEEEEehhHHH
Confidence            87753       2555555555    999999999978777776666654432   33  899999999965

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.81  E-value=2.3e-08  Score=85.42  Aligned_cols=64  Identities=25%  Similarity=0.319  Sum_probs=45.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (301)
                      ...+++|+|.+|+|||||+|+|++.....++. ..+.|...+...   . +..+.++||||+..+...+
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~---~-~~~~~l~DtPG~~~~~~~~  180 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIK---L-SDGLELLDTPGILWPKFED  180 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEE---e-CCCEEEEECCCcccCCCCc
Confidence            35789999999999999999999987644443 234444443222   2 3468999999997654433

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.80  E-value=3.4e-07  Score=75.40  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      |..+.||.|.|.+..         ++ ....    -+|.+++|+.+.  +.+...-.    -+.+.       .=++|+|
T Consensus       121 G~D~IiiETVGvGQs---------E~-~I~~----~aD~~v~v~~Pg~GD~iQ~~Ka----GimEi-------aDi~vVN  175 (266)
T PF03308_consen  121 GFDVIIIETVGVGQS---------EV-DIAD----MADTVVLVLVPGLGDEIQAIKA----GIMEI-------ADIFVVN  175 (266)
T ss_dssp             T-SEEEEEEESSSTH---------HH-HHHT----TSSEEEEEEESSTCCCCCTB-T----THHHH--------SEEEEE
T ss_pred             CCCEEEEeCCCCCcc---------HH-HHHH----hcCeEEEEecCCCccHHHHHhh----hhhhh-------ccEEEEe
Confidence            678899999998872         21 2222    339988888776  33322211    12222       4578999


Q ss_pred             CCCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      |.|....     +....+     ++..+.-..       .+++.      +++.++.|+++|++.|.+...
T Consensus       176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~------tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLK------TSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEE------EEeCCCCCHHHHHHHHHHHHH
Confidence            9995433     222222     333332221       23333      677788999999999977543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=6.6e-08  Score=86.60  Aligned_cols=123  Identities=19%  Similarity=0.191  Sum_probs=83.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ...++..++|+||+|+|||||+.+|.....-.+. ....++|+       .....+.+++..+|.  |        ...+
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~m  127 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQM  127 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHH
Confidence            3445678899999999999999999754321111 11222332       223456889999994  2        1245


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                      +.....+    |.+|+++|+.-+|.-+...+|..+... |.+   .++-|+||.|+...+ .++....+.
T Consensus       128 iDvaKIa----DLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKr  188 (1077)
T COG5192         128 IDVAKIA----DLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKR  188 (1077)
T ss_pred             HhHHHhh----heeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHH
Confidence            5544444    999999999878888888888888775 443   477889999988652 455554443

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.80  E-value=1.8e-08  Score=84.76  Aligned_cols=62  Identities=31%  Similarity=0.325  Sum_probs=41.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +.+.+++|++|+|||||+|+|.+.....++..     .+- .|+....+.+.    ....|+|||||..+..
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l  231 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL  231 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence            45789999999999999999998665444321     112 23333333321    2337999999987654

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=2.3e-08  Score=73.74  Aligned_cols=162  Identities=17%  Similarity=0.113  Sum_probs=99.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|.++|-.|+||||++-.+---++..+.     +|....+..+. +++-++.+||.-|-.+           +..++
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttk-----Ptigfnve~v~-yKNLk~~vwdLggqtS-----------irPyW   79 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-----PTIGFNVETVP-YKNLKFQVWDLGGQTS-----------IRPYW   79 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccC-----CCCCcCccccc-cccccceeeEccCccc-----------ccHHH
Confidence            5589999999999999987665422221111     11122222223 4677889999988444           44455


Q ss_pred             hccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ..++...+++|||+|.+  ++++........+|.+---..  ..++++.||.|....  ....+....     +.  +..
T Consensus        80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~-----L~--l~~  148 (182)
T KOG0072|consen   80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKM-----LG--LQK  148 (182)
T ss_pred             HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHH-----hC--hHH
Confidence            55678889999999998  455555555555555421111  167888999997765  344443332     11  122


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+...+   ...||-.+.|++..++|+.+.+..
T Consensus       149 Lk~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  149 LKDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HhhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence            23333221   235777889999999999887653

>PRK12289 GTPase RsgA; Reviewed

Probab=98.79  E-value=1e-08  Score=89.82  Aligned_cols=60  Identities=25%  Similarity=0.349  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----C-cceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      ..++|+|++|+|||||+|+|++.....++..+.     - .|+....+..  ..+  ..|+||||+..+.
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~~  238 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQPD  238 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCccccc
Confidence            458999999999999999999887655443222     1 2333333221  222  3799999987754

>cd01856 YlqF YlqF

Probab=98.79  E-value=2e-08  Score=79.52  Aligned_cols=58  Identities=28%  Similarity=0.397  Sum_probs=40.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (301)
                      ...+++++|.+|+|||||+|+|++......+ ...+.|.......   .+ ..+.+|||||+.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~---~~-~~~~~iDtpG~~  171 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIK---IS-PGIYLLDTPGIL  171 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEE---ec-CCEEEEECCCCC
Confidence            3478999999999999999999987653332 2223444443332   22 568999999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.78  E-value=1.3e-08  Score=85.19  Aligned_cols=61  Identities=25%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (301)
                      ..++++|++|+|||||+|+|++.....++...     +. .|+....+..   .  ...|+||||+..+...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l~  187 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGLW  187 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCCC
Confidence            57899999999999999999998765544221     11 3344444332   2  2389999999886543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.77  E-value=4.6e-09  Score=87.28  Aligned_cols=127  Identities=17%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH---HHhhCccccCeEEEEEeC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL---PNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~~ilv~nk  146 (301)
                      .+.++||||....... ......+.+.+..  ...-++++++|+. .++......-..+   .-++.-+.  |.+.++||
T Consensus        92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~l--P~vnvlsK  165 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLEL--PHVNVLSK  165 (238)
T ss_dssp             SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTS--EEEEEE--
T ss_pred             cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCC--CEEEeeec
Confidence            6899999995442111 1122233333322  4456789999998 4444332221211   11111122  99999999


Q ss_pred             CCCCCCccccHHHHhcc-------------cCCchHHHHHHHcCC--ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          147 GDDLEDHEKTLEDFLGH-------------ECPKPLKEILQLCDN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +|.........-++..+             .....+..++...+.  +.++      .++.++.++.+|+..+++..
T Consensus       166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~p------ls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIP------LSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-------BTTTTTTHHHHHHHHHHHH
T ss_pred             cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEE------EECCChHHHHHHHHHHHHHh
Confidence            99886310111111111             011112222222222  2333      56667788999998887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=8.9e-08  Score=72.51  Aligned_cols=116  Identities=10%  Similarity=0.053  Sum_probs=73.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+++++|-.|||||||++.|-....-.-.+...+.+     .... ..+-.++.+|.-|..           +..+..
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~-Ig~m~ftt~DLGGH~-----------qArr~w   81 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELS-IGGMTFTTFDLGGHL-----------QARRVW   81 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHhe-ecCceEEEEccccHH-----------HHHHHH
Confidence            34679999999999999999986544311112222221     1122 577889999999822           344445


Q ss_pred             hccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ..+++.+|++++.+|+.  .|+.+. +..++.+... ..-.+-|++++.||+|....
T Consensus        82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence            56677889999999997  344322 3333333222 10123399999999997765

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.72  E-value=3.8e-08  Score=87.06  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFK---ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~---~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      .+++++|.+|+|||||+|+|++.....   ...+. ++.|.....  +. . +..+.++||||+.........+..+-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~-~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IP-L-DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EE-e-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            589999999999999999999864311   11222 333433322  22 2 3346899999998742111111111111


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      .+. -........+.++....+..+...++..+..   ...  .+.+.+++.+..
T Consensus       231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~~--~~~~~~~~~~~~  279 (360)
T TIGR03597       231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EKT--SFTFYVSNELNI  279 (360)
T ss_pred             hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cce--EEEEEccCCcee
Confidence            111 1345677788877764444444444443332   111  345555554443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.72  E-value=1.1e-06  Score=76.19  Aligned_cols=124  Identities=17%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc------CCCCC-----------cceeeEeEEEE----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSG-----------VTKTCEMKTTV----------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~------~~~~~-----------~t~~~~~~~~~----------------   64 (301)
                      ++..|+|+|++|+||||++..|.+......+      .....           ...........                
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998764321110      00000           00000111000                


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc----CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      ...+..+++|||||.....   ....+++.......    ...++..++|++++.+.  ........+.+.++     +.
T Consensus       193 ~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~-----~~  262 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVG-----LT  262 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCC-----CC
Confidence            0134578999999976632   23333444433221    24578899999998322  22222233222222     56


Q ss_pred             EEEEeCCCCCC
Q 022188          141 IVVFTGGDDLE  151 (301)
Q Consensus       141 ilv~nk~D~~~  151 (301)
                      -+|+||.|...
T Consensus       263 giIlTKlD~t~  273 (318)
T PRK10416        263 GIILTKLDGTA  273 (318)
T ss_pred             EEEEECCCCCC
Confidence            79999999653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.71  E-value=6e-07  Score=75.00  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=58.1

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHH-HHHHHhhCccccCeEEEEEeC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      |..+.+|.|.|.+.+..       .+..       -+|.+++|.-+.  . +.+...+ .-+.+.       -=++++||
T Consensus       143 G~DvIIVETVGvGQsev-------~I~~-------~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK  198 (323)
T COG1703         143 GYDVIIVETVGVGQSEV-------DIAN-------MADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK  198 (323)
T ss_pred             CCCEEEEEecCCCcchh-------HHhh-------hcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence            67889999999888422       2222       238888876544  1 1222222 222232       35689999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEec-CCCcccccchhHHHHHHHHHHHHHhh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD-NKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .|..... ....++...     +......  .+...+. +....++..+.|+++|++.|.+....
T Consensus       199 aD~~~A~-~a~r~l~~a-----l~~~~~~--~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         199 ADRKGAE-KAARELRSA-----LDLLREV--WRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             cChhhHH-HHHHHHHHH-----HHhhccc--ccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            9944330 111111111     2111100  1111111 22347888899999999999877543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.71  E-value=6.1e-08  Score=83.59  Aligned_cols=60  Identities=30%  Similarity=0.320  Sum_probs=40.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cccee-eEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~-~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      +..++++|++|+|||||+|+|+|.....++....     ..|+. .....   .. ....++||||+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~---~~-~~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD---LP-GGGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE---cC-CCcEEEECCCcCcc
Confidence            3679999999999999999999987655543321     12332 22221   22 23489999998864

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.70  E-value=4.7e-08  Score=85.01  Aligned_cols=63  Identities=29%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (301)
                      ..+++|+|.||+||||+||+|+|.....++.. ++.|...+...    -+..+.++||||+.-....+
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCCCcCCCCccc
Confidence            37899999999999999999999988444432 24454444332    23458999999988765433

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.70  E-value=1.5e-07  Score=82.24  Aligned_cols=122  Identities=17%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEE----------------------------EEeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKT----------------------------TVLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~----------------------------~~~~~~~   69 (301)
                      ++.|++|||||+||||.+-.|........+....+ .|+++-...                            ......+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            68999999999999999999876554222211111 222221110                            0001256


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~  149 (301)
                      .++||||.|....   +.....++..++..+  ...-+.+|++++.. ...-+..+..+...   +   .--+++||+|.
T Consensus       283 d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~f~~~---~---i~~~I~TKlDE  350 (407)
T COG1419         283 DVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQFSLF---P---IDGLIFTKLDE  350 (407)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHHhccC---C---cceeEEEcccc
Confidence            8999999997663   444555666665544  33445566676611 11223333333322   1   35588999997


Q ss_pred             CCC
Q 022188          150 LED  152 (301)
Q Consensus       150 ~~~  152 (301)
                      ...
T Consensus       351 T~s  353 (407)
T COG1419         351 TTS  353 (407)
T ss_pred             cCc
Confidence            644

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.69  E-value=6.4e-08  Score=83.01  Aligned_cols=60  Identities=32%  Similarity=0.388  Sum_probs=40.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      .+++++|++|+|||||+|+|+|.....++....    +  .|+......   .. ....++||||+.++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~---~~-~~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP---LP-GGGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE---cC-CCCEEEECCCCCccC
Confidence            689999999999999999999987765553221    1  233332222   11 123799999996643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.69  E-value=5.6e-07  Score=76.15  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-------------C---CeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------------D---GQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------------~---~~~~~liDtPG~~~   81 (301)
                      ..+.|+|||.+++|||||+|+|+.....  ....+..|.......+...             .   .-.++++|..|+-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            3479999999999999999999977652  1222334444333222111             1   13679999999876


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      .....+-++..+..-+.    .+|+++.|+++.
T Consensus        97 GAs~G~GLGN~FLs~iR----~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIR----HVDAIFHVVRAF  125 (391)
T ss_pred             CcccCcCchHHHHHhhh----hccceeEEEEec
Confidence            55555555666665554    559999998876

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=5.2e-07  Score=79.06  Aligned_cols=123  Identities=19%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC------c--cccCCCCCc---------ceeeEeEEEEe-------------eC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA------F--KASAGSSGV---------TKTCEMKTTVL-------------KD   67 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~------~--~~~~~~~~~---------t~~~~~~~~~~-------------~~   67 (301)
                      ....|+|+|++|+||||++..|++...      .  .......+.         ...........             ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            347899999999999999999864321      0  000000000         00000000000             01


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.||||||....   +.....++...+..  ..++.+++|++++ .-.......++.+.. ++     .--+|+||.
T Consensus       320 ~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNYR---ASETVEEMIETMGQ--VEPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEcc
Confidence            347899999997652   33344555555543  3467888888886 112222444444443 22     456899999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       388 DET~k  392 (436)
T PRK11889        388 DETAS  392 (436)
T ss_pred             cCCCC
Confidence            97644

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=7.4e-07  Score=84.61  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEe------------------EEE----------EeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEM------------------KTT----------VLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~~~------------------~~~----------~~~~~~   69 (301)
                      +..|+|+|++|+||||++..|.+......+.... -.+.+...                  ...          ....+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            4689999999999999999998755322110000 00000000                  000          001245


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      .++||||||....   +..+.+++.....  ...++-.++|++++.  ...+ ...++.+....+.+   ..-+|+||.|
T Consensus       265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~---i~glIlTKLD  334 (767)
T PRK14723        265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGED---VDGCIITKLD  334 (767)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence            7899999997663   2334444443322  235677889999872  2222 23344444322212   4568899999


Q ss_pred             CCCC
Q 022188          149 DLED  152 (301)
Q Consensus       149 ~~~~  152 (301)
                      ....
T Consensus       335 Et~~  338 (767)
T PRK14723        335 EATH  338 (767)
T ss_pred             CCCC
Confidence            7644

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.66  E-value=3.1e-07  Score=81.97  Aligned_cols=123  Identities=17%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEe------------------EE----------EEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEM------------------KT----------TVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~------------------~~----------~~~~~   67 (301)
                      +.+.+|+|+|+||+||||++..|.+...+..+....+ .+.....                  ..          .....
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~  268 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR  268 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence            3567999999999999999998876432111100000 0000000                  00          00012


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      +..+.+|||+|....   +....+++... .. ...++-.++|++++.  ...+ ...+..+.. +  +   ..-+|+||
T Consensus       269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-~--~---~~~~I~TK  335 (420)
T PRK14721        269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATS--SGDTLDEVISAYQG-H--G---IHGCIITK  335 (420)
T ss_pred             CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCC--CHHHHHHHHHHhcC-C--C---CCEEEEEe
Confidence            457899999997763   23333444432 21 234566788888872  2222 223333322 1  2   45689999


Q ss_pred             CCCCCC
Q 022188          147 GDDLED  152 (301)
Q Consensus       147 ~D~~~~  152 (301)
                      .|....
T Consensus       336 lDEt~~  341 (420)
T PRK14721        336 VDEAAS  341 (420)
T ss_pred             eeCCCC
Confidence            997644

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.5e-07  Score=77.32  Aligned_cols=173  Identities=17%  Similarity=0.164  Sum_probs=106.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..+..+|+-+|+...|||||-.+|+....-..+              ....+.|....-..+. -..+...=+|+||.-|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence            345579999999999999999998743210000              1122555554444333 3456777899999665


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                                .+.+.+. -...-|+.|+|+.++++..++.++-+-..++. |.+   ++++.+||.|..++  +++-+.+
T Consensus       130 ----------YIKNMIt-GaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~d--~e~leLV  192 (449)
T KOG0460|consen  130 ----------YIKNMIT-GAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVDD--PEMLELV  192 (449)
T ss_pred             ----------HHHHhhc-CccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccCC--HHHHHHH
Confidence                      1222222 23455999999999988888888877666664 554   89999999999866  4554544


Q ss_pred             cccCCchHHHHHHHcCCc--eEEecCCCcccccc-------hhHHHHHHHHHHHHHhh
Q 022188          162 GHECPKPLKEILQLCDNR--CVLFDNKTKDEAKG-------TEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~L~~~l~~~~~~  210 (301)
                      +-    .+++++..+|..  -.|+-......|..       ...+..|++.++..++.
T Consensus       193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~  246 (449)
T KOG0460|consen  193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT  246 (449)
T ss_pred             HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence            43    167777766532  11111111111111       24577888888876653

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.3e-07  Score=87.44  Aligned_cols=118  Identities=21%  Similarity=0.375  Sum_probs=81.9

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      .+....++|.++.|...|||||..+|...+-..+              .....+.|-+....+.. ..+..+++||+||.
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspgh   82 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCCc
Confidence            3445678999999999999999999875432111              11122555555444432 57789999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHH--HHHHhhCccccCeEEEEEeCCCCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH--RLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~--~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      -|+..       ++..+...+    |++++++|+..+........++  ++...       ..++|+||+|.+
T Consensus        83 vdf~s-------evssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~~~~-------~~~lvinkidrl  137 (887)
T KOG0467|consen   83 VDFSS-------EVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWIEGL-------KPILVINKIDRL  137 (887)
T ss_pred             cchhh-------hhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHHccC-------ceEEEEehhhhH
Confidence            98643       444444444    9999999998888887776666  33222       688999999954

>TIGR00092 GTP-binding protein YchF

Probab=98.61  E-value=2e-07  Score=81.51  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~   83 (301)
                      ..++|+|.||+|||||+|+|++....+... .+..|...........+                ...+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCC-CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            579999999999999999999876512211 12222322222222112                2367899999987643


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ......+..+...+..+    |++++|++..
T Consensus        82 s~g~Glgn~fL~~ir~~----d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREV----DIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence            22223444555555544    9999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.61  E-value=1.9e-06  Score=75.78  Aligned_cols=129  Identities=19%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccceee------------------EeEEE----------EeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTC------------------EMKTT----------VLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~------------------~~~~~----------~~~~~   68 (301)
                      .+..++|+|++|+||||++..|.+......+.... -.+...                  .....          ..+.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            35789999999999999999997643211110000 000000                  00000          11235


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccc---cCeEEEEEe
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT  145 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~n  145 (301)
                      ..+.+|||||....   +..+.+++.. +.. ...+.-.++|++++.+.... ...+..+....+.+.   ....-+|+|
T Consensus       216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~T  289 (374)
T PRK14722        216 KHMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILT  289 (374)
T ss_pred             CCEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEe
Confidence            68899999997752   2333333332 222 23445668888887333222 233444444322110   013458899


Q ss_pred             CCCCCCC
Q 022188          146 GGDDLED  152 (301)
Q Consensus       146 k~D~~~~  152 (301)
                      |.|....
T Consensus       290 KlDEt~~  296 (374)
T PRK14722        290 KLDEASN  296 (374)
T ss_pred             ccccCCC
Confidence            9997644

>cd01859 MJ1464 MJ1464

Probab=98.61  E-value=1.5e-07  Score=73.27  Aligned_cols=57  Identities=32%  Similarity=0.427  Sum_probs=39.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ...+++++|.+|+||||++|.+.+......+.. .+.|...+..    ..+..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV----KITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE----EcCCCEEEEECcCC
Confidence            347899999999999999999998765433322 2334333221    12346899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.59  E-value=3.7e-06  Score=71.42  Aligned_cols=76  Identities=21%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc----CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                      .+..+.+|||||....   +.....++.......    ...+|..++|++++.  ..........+.+.++     ..-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence            3467899999997763   334444444443221    245799999999972  2333333333333332     4678


Q ss_pred             EEeCCCCCCC
Q 022188          143 VFTGGDDLED  152 (301)
Q Consensus       143 v~nk~D~~~~  152 (301)
                      |+||+|....
T Consensus       223 IlTKlDe~~~  232 (272)
T TIGR00064       223 ILTKLDGTAK  232 (272)
T ss_pred             EEEccCCCCC
Confidence            9999997644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.59  E-value=2.2e-06  Score=74.60  Aligned_cols=73  Identities=18%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.||||||....   +.....++......  ..+|.+++|+++..+  .......+.+.+..+     .--+++||+
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence            456899999997763   23344455444332  357888999998732  222223333333222     466899999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       290 D~~~~  294 (336)
T PRK14974        290 DADAK  294 (336)
T ss_pred             cCCCC
Confidence            97644

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.57  E-value=5.7e-07  Score=67.36  Aligned_cols=180  Identities=17%  Similarity=0.143  Sum_probs=102.8

Q ss_pred             CCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188            5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus         5 ~~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      .+..+-....+..-..+|+++|.+..|||||+-...|...-..-....+..--.....+. .....+.+||.-|-     
T Consensus         6 tv~~~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~-----   79 (205)
T KOG1673|consen    6 TVANNSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQ-----   79 (205)
T ss_pred             ccccCCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCc-----
Confidence            344444444444456899999999999999998888766421111111111111111111 12335689999882     


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~  164 (301)
                            +++...+..+..++-++++++|.+.+.+-..  ...+.++..|-+...--++|.||-|..-.-..++.+.+.. 
T Consensus        80 ------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~-  150 (205)
T KOG1673|consen   80 ------REFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR-  150 (205)
T ss_pred             ------HhhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-
Confidence                  3566777777888899999999995544444  2233333333221112347889988653311223222221 


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                         .-+.+........+.      +|+....+++.++..+...+
T Consensus       151 ---qar~YAk~mnAsL~F------~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  151 ---QARKYAKVMNASLFF------CSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             ---HHHHHHHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence               134444445566655      56656688999998876544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.55  E-value=1.2e-07  Score=87.28  Aligned_cols=132  Identities=16%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++-+|+|+|++|+|||||++.|+|.....+|....+.+....++...... ...-+++|.-.-..+...    ..++..+
T Consensus       347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----e~~~r~~  422 (530)
T COG0488         347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD----EQEVRAY  422 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc----HHHHHHH
Confidence            45799999999999999999999887766554444555555444322100 011122221100000000    1233333


Q ss_pred             Hhcc-CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE---EeCCCCCCCccccHHHHhc
Q 022188           97 LGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        97 ~~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv---~nk~D~~~~~~~~~~~~~~  162 (301)
                      +... +++.++.-   .+ ..++++++..+...+-++..+   +++|+   +||.|...-  ..+++.+.
T Consensus       423 L~~f~F~~~~~~~---~v-~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~  483 (530)
T COG0488         423 LGRFGFTGEDQEK---PV-GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALL  483 (530)
T ss_pred             HHHcCCChHHHhC---ch-hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHH
Confidence            3322 23333311   12 367889988887777766654   67777   898886533  34444444

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.54  E-value=6.1e-07  Score=73.35  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|+|+|+.|+|||||++.++..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.54  E-value=2.5e-06  Score=78.65  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      ++-+|+|||+||+|||||++.|+|.....+|.
T Consensus        28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~   59 (530)
T COG0488          28 PGERIGLVGRNGAGKSTLLKILAGELEPDSGE   59 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence            45799999999999999999999998755553

>TIGR00101 ureG urease accessory protein UreG

Probab=98.52  E-value=1.7e-06  Score=70.06  Aligned_cols=81  Identities=10%  Similarity=0.028  Sum_probs=45.5

Q ss_pred             cEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEec
Q 022188          105 HAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD  184 (301)
Q Consensus       105 ~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  184 (301)
                      |.++.|+|+.+..+ ....    ...    .+...-++++||+|..+.....++.....     ++.+  ..+.+++.  
T Consensus       114 ~~~i~vvD~~~~~~-~~~~----~~~----qi~~ad~~~~~k~d~~~~~~~~~~~~~~~-----~~~~--~~~~~i~~--  175 (199)
T TIGR00101       114 DLTIFVIDVAAGDK-IPRK----GGP----GITRSDLLVINKIDLAPMVGADLGVMERD-----AKKM--RGEKPFIF--  175 (199)
T ss_pred             CcEEEEEEcchhhh-hhhh----hHh----HhhhccEEEEEhhhccccccccHHHHHHH-----HHHh--CCCCCEEE--
Confidence            77899999872222 1111    011    11113479999999874211223332222     2222  12344554  


Q ss_pred             CCCcccccchhHHHHHHHHHHHH
Q 022188          185 NKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                          .|++++.|++++++++.+.
T Consensus       176 ----~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       176 ----TNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             ----EECCCCCCHHHHHHHHHhh
Confidence                7889999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.51  E-value=1.2e-07  Score=80.14  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       139 ~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +-++|+||+|+.......++.++..     ++.+.+  ..++++      .|++++.++++|+++|..
T Consensus       232 ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        232 ASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET  286 (290)
T ss_pred             CcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence            6789999999875311234444433     333321  344555      788889999999999865

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.50  E-value=1.8e-07  Score=83.09  Aligned_cols=60  Identities=33%  Similarity=0.366  Sum_probs=46.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      ..+|++||.+|+||||+||+|.|.+.. +..++++.|.+.+...    -...+.|.|+||+--++
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~----ls~~v~LCDCPGLVfPS  373 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIF----LSPSVCLCDCPGLVFPS  373 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEE----cCCCceecCCCCccccC
Confidence            489999999999999999999999872 2234567787776543    24567899999976543

>PRK13796 GTPase YqeH; Provisional

Probab=98.49  E-value=2.5e-07  Score=81.96  Aligned_cols=59  Identities=25%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~---~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ..++.++|.+|+|||||+|+|++...-.   ...+. ++.|......  . . +....++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~--~-l-~~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI--P-L-DDGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE--E-c-CCCcEEEECCCccc
Confidence            3579999999999999999998643111   11222 2334333222  2 1 22358999999965

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.47  E-value=1.1e-06  Score=68.54  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .++|+|..|+|||||++.+++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcc
Confidence            47899999999999999988653

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.47  E-value=8.8e-06  Score=72.24  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc-------cc---CCCC-----------CcceeeEeEEE----------Eee
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK-------AS---AGSS-----------GVTKTCEMKTT----------VLK   66 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~-------~~---~~~~-----------~~t~~~~~~~~----------~~~   66 (301)
                      .+..|+++|++|+||||++..|.......       ..   ..+.           ...........          ...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            35689999999999999998886432110       00   0000           00000000000          001


Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .+..+.+|||||....   +.....++..++.... ..+-.++|++++..  ..+.  .+.+...-.-+   +--+++||
T Consensus       253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~~--~~~~~~~~~~~---~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSDV--KEIFHQFSPFS---YKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHHH--HHHHHHhcCCC---CCEEEEEe
Confidence            3568899999997753   2222345555554332 23457888998833  2221  13333331111   46689999


Q ss_pred             CCCCCC
Q 022188          147 GDDLED  152 (301)
Q Consensus       147 ~D~~~~  152 (301)
                      .|....
T Consensus       322 lDet~~  327 (388)
T PRK12723        322 LDETTC  327 (388)
T ss_pred             ccCCCc
Confidence            997644

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.46  E-value=5.2e-06  Score=72.66  Aligned_cols=123  Identities=20%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------Cc--cccCCCCCc---------ceeeEeEEEEe-------------eC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK------AF--KASAGSSGV---------TKTCEMKTTVL-------------KD   67 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~------~~--~~~~~~~~~---------t~~~~~~~~~~-------------~~   67 (301)
                      +...|+|+|++|+||||++..|....      +.  .......+.         ...........             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            45789999999999999999886421      10  000000000         00000000000             02


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..++||||||....   +.....++......  ..++.+++|++++  ....+  ....+.. |..  ...--+|+||.
T Consensus       285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL  352 (407)
T PRK12726        285 CVDHILIDTVGRNYL---AEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM  352 (407)
T ss_pred             CCCEEEEECCCCCcc---CHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence            357899999997652   33444455444432  2557777777764  22323  2233322 221  11456889999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       353 DET~~  357 (407)
T PRK12726        353 DETTR  357 (407)
T ss_pred             cCCCC
Confidence            97644

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.46  E-value=2.4e-05  Score=70.66  Aligned_cols=72  Identities=22%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..+.||||||....   +....+++.....  ...+|.+++|+|++.+  .   ..+..++. |.... ...-+|+||.|
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence            47899999997653   3444455554433  2356889999998732  2   22233322 22211 13568899999


Q ss_pred             CCCC
Q 022188          149 DLED  152 (301)
Q Consensus       149 ~~~~  152 (301)
                      ....
T Consensus       244 ~~a~  247 (437)
T PRK00771        244 GTAK  247 (437)
T ss_pred             CCCc
Confidence            6543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.46  E-value=7.6e-06  Score=74.59  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|+|+|++|+||||++..|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988875

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.44  E-value=6.8e-06  Score=74.67  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..|+|+|+||+||||++..|.+..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHH
Confidence            34689999999999999999998654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.44  E-value=2e-06  Score=77.56  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceee------------------EeEEE----------EeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTC------------------EMKTT----------VLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~------------------~~~~~----------~~~~~~   69 (301)
                      +..|+|+|++|+||||++..|..... ...+....-.+.+.                  .....          ....+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            46899999999999999988764322 11110000000000                  00000          001246


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      .+.||||||....   +.....++..++.. ...+.-.++|++++  ....+ ...+..+...   .   +.-+|+||+|
T Consensus       301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~--~~~~~l~~~~~~f~~~---~---~~~vI~TKlD  368 (424)
T PRK05703        301 DVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSAT--TKYEDLKDIYKHFSRL---P---LDGLIFTKLD  368 (424)
T ss_pred             CEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECC--CCHHHHHHHHHHhCCC---C---CCEEEEeccc
Confidence            7899999998653   23333455555542 22345667778876  22222 3333333321   1   3458899999


Q ss_pred             CCCC
Q 022188          149 DLED  152 (301)
Q Consensus       149 ~~~~  152 (301)
                      ....
T Consensus       369 et~~  372 (424)
T PRK05703        369 ETSS  372 (424)
T ss_pred             cccc
Confidence            7533

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.44  E-value=3.4e-07  Score=74.63  Aligned_cols=91  Identities=16%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      -+++++|.|.+||||++.-|+|...   .......|+-..+.....+.+..+.+.|.||+.+......-.++++.    .
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvi----a  132 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI----A  132 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEE----E
Confidence            4899999999999999999998653   33334445555555555578889999999999875433222222222    2


Q ss_pred             cCCCccEEEEEEecCCCC
Q 022188          100 AKDGIHAFLVVFSVTNRF  117 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~  117 (301)
                      ..+.++.+++|+|+-.++
T Consensus       133 vartcnli~~vld~~kp~  150 (358)
T KOG1487|consen  133 VARTCNLIFIVLDVLKPL  150 (358)
T ss_pred             EeecccEEEEEeeccCcc
Confidence            245568888888876433

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.39  E-value=1.9e-06  Score=76.49  Aligned_cols=124  Identities=17%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCc--------------ceeeEeEEE---------EeeCCeeE
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGV--------------TKTCEMKTT---------VLKDGQVV   71 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~~~~--------------t~~~~~~~~---------~~~~~~~~   71 (301)
                      ...|+|+|++|+||||++..|........+    ......              .........         ....+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            467999999999999999988743211000    000000              000000000         00135578


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccC-CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      .||||||+....   .....++...+.... ..++-.++|++++... .......+.+ +.++     +--+|+||.|..
T Consensus       303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f-~~~~-----~~glIlTKLDEt  372 (432)
T PRK12724        303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAY-ESLN-----YRRILLTKLDEA  372 (432)
T ss_pred             EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHh-cCCC-----CCEEEEEcccCC
Confidence            999999987532   233344544443322 2355678899987221 1222333333 2222     466899999976


Q ss_pred             CC
Q 022188          151 ED  152 (301)
Q Consensus       151 ~~  152 (301)
                      ..
T Consensus       373 ~~  374 (432)
T PRK12724        373 DF  374 (432)
T ss_pred             CC
Confidence            44

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.37  E-value=1.3e-06  Score=70.14  Aligned_cols=120  Identities=19%  Similarity=0.279  Sum_probs=73.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+++|.+|+||||+=-.+..... .-.....+.|.+..-.+....++-.+.+||.-|-..          .+..++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~----------fmen~~~   72 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE----------FMENYLS   72 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHH----------HHHHHHh
Confidence            47899999999999997665553221 111223355555544444434456789999998222          2333333


Q ss_pred             ----ccCCCccEEEEEEecCCCCCHHH----HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           99 ----MAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        99 ----~~~~~~~~il~v~~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                          ..+..++++++|+|+..+--..+    ...|+.+.+..+. .  .++.+++|+|+...
T Consensus        73 ~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-A--kiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   73 SQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-A--KIFCLLHKMDLVQE  131 (295)
T ss_pred             hcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-c--eEEEEEeechhccc
Confidence                23577899999999984422333    2334444444332 2  68889999998755

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.30  E-value=8e-06  Score=69.00  Aligned_cols=123  Identities=18%  Similarity=0.109  Sum_probs=68.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc---cccCCCC--------------CcceeeEeEEEE-------------eeC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSS--------------GVTKTCEMKTTV-------------LKD   67 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~---~~~~~~~--------------~~t~~~~~~~~~-------------~~~   67 (301)
                      +..+|+++|++|+||||++..|++....   ..+....              ............             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4479999999999999999988754210   0100000              000000000000             012


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.+|||||-...   +....+++...+...  .++-+++|++++ .-.......++.+.. ++     +--+++||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~-~~~~d~~~~~~~f~~-~~-----~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc-cCHHHHHHHHHHhCC-CC-----CCEEEEEee
Confidence            457899999997652   233445555554422  557789999987 111222344444443 12     466899999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       222 Det~~  226 (270)
T PRK06731        222 DETAS  226 (270)
T ss_pred             cCCCC
Confidence            97644

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.29  E-value=2e-05  Score=62.57  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence            34578999999999999999999997764333

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.29  E-value=2.6e-06  Score=71.53  Aligned_cols=70  Identities=26%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (301)
                      ...++.|+|-||+|||||+|++-....-..+    ....+.|...... +.......++++||||...++..+.+
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence            4589999999999999999997543321111    1233556555442 23346678999999999988776644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.27  E-value=4.7e-06  Score=69.34  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188            6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +..+.++.-+.  +..++|+||||||||||+++|.|...+..|
T Consensus        17 il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G   57 (258)
T COG1120          17 ILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKPKSG   57 (258)
T ss_pred             EEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            34444444333  478999999999999999999997665444

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=2.6e-06  Score=66.12  Aligned_cols=158  Identities=16%  Similarity=0.069  Sum_probs=93.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--eeCC-eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDG-QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ....++++|..|.||||++++.+-...-...    ..|+........  ...+ ..+.+|||.|.....+-         
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y----~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl---------   75 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY----PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL---------   75 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecc----cCcceeEEeeeeeecccCcEEEEeeecccceeeccc---------
Confidence            3588999999999999999998754431222    223333333222  1223 57899999995442210         


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                        --.++-+..+.++++|+..+++-.. .++.+-+...+++ +  |+++..||.|....  .     ++. .   --.+.
T Consensus        76 --rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-i--Piv~cGNKvDi~~r--~-----~k~-k---~v~~~  139 (216)
T KOG0096|consen   76 --RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-I--PIVLCGNKVDIKAR--K-----VKA-K---PVSFH  139 (216)
T ss_pred             --ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-C--Ceeeeccceecccc--c-----ccc-c---cceee
Confidence              0112334467788889887777766 4566666666665 3  99999999996533  1     000 0   00011


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+-...++.      .|++...++..-+-++.+.+..
T Consensus       140 rkknl~y~~------iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  140 RKKNLQYYE------ISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             ecccceeEE------eecccccccccchHHHhhhhcC
Confidence            111222333      5666777788888888776644

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.27  E-value=1.3e-05  Score=66.35  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+||||+|||||+++|+|...+..|
T Consensus        30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          30 GEITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            467999999999999999999996654444

>PRK10867 signal recognition particle protein; Provisional

Probab=98.27  E-value=5.4e-05  Score=68.23  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.||||||....   +.....++......  ..|+.+++|+|+..  ........+.+.+.++     ..-+|+||.
T Consensus       183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~~-----i~giIlTKl  250 (433)
T PRK10867        183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEALG-----LTGVILTKL  250 (433)
T ss_pred             CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            457899999997652   33344444443332  25678899999751  1222333344433222     356788999


Q ss_pred             CCCC
Q 022188          148 DDLE  151 (301)
Q Consensus       148 D~~~  151 (301)
                      |...
T Consensus       251 D~~~  254 (433)
T PRK10867        251 DGDA  254 (433)
T ss_pred             cCcc
Confidence            9653

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.27  E-value=2.1e-05  Score=62.69  Aligned_cols=31  Identities=32%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999998664433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.24  E-value=3.7e-05  Score=64.99  Aligned_cols=29  Identities=28%  Similarity=0.557  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK   46 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~   46 (301)
                      .+.+|+|+|.+|+|||||+..|-|.....
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~K   79 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETVK   79 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccccC
Confidence            46789999999999999999999877533

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.20  E-value=2e-05  Score=62.50  Aligned_cols=31  Identities=29%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSG   55 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            3468999999999999999999998654333

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=4.4e-06  Score=71.66  Aligned_cols=141  Identities=21%  Similarity=0.216  Sum_probs=87.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccce--eeEeEEEE-------e-----------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVTK--TCEMKTTV-------L-----------   65 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-------------~~t~--~~~~~~~~-------~-----------   65 (301)
                      ..|++++|...+|||||+-.|+.... +.+....             +-|.  ......+.       +           
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            47999999999999999988874331 1111000             0010  00110000       0           


Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      ....-+++||..|....       .+.-+..+.  .-.||..++|+.++.+++...++-+-.+..+   ++  |+++++|
T Consensus       246 ~SSKlvTfiDLAGh~kY-------~~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvt  311 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKY-------QKTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVT  311 (591)
T ss_pred             hhcceEEEeecccchhh-------heeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEE
Confidence            01246788898884431       111112222  2357889999999878888777777776654   44  9999999


Q ss_pred             CCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      |+|+...  ..++..+++     +.+++.+.|-+-.
T Consensus       312 K~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~kv  340 (591)
T KOG1143|consen  312 KMDLVDR--QGLKKTVKD-----LSNLLAKAGCTKV  340 (591)
T ss_pred             eeccccc--hhHHHHHHH-----HHHHHhhcCcccc
Confidence            9999887  777777776     7777776664433

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.18  E-value=0.00015  Score=63.98  Aligned_cols=73  Identities=18%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.+|||.|-..   .++.+..++...-.  .-.||-+++|+|+..+-  .....-+.+.+.++.     .=+|+||+
T Consensus       182 ~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQ--dA~~~A~aF~e~l~i-----tGvIlTKl  249 (451)
T COG0541         182 GYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQ--DAVNTAKAFNEALGI-----TGVILTKL  249 (451)
T ss_pred             CCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccch--HHHHHHHHHhhhcCC-----ceEEEEcc
Confidence            45789999999665   35566666655433  34789999999987222  223344555555543     45889999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       250 DGdaR  254 (451)
T COG0541         250 DGDAR  254 (451)
T ss_pred             cCCCc
Confidence            97643

>cd00066 G-alpha G protein alpha subunit

Probab=98.17  E-value=1.5e-05  Score=69.42  Aligned_cols=75  Identities=12%  Similarity=0.146  Sum_probs=46.6

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+||++|-..          +...| ..++.+++++++|++.++.        ....-...+..+...+..+  
T Consensus       158 ~~~~~~~~~DvgGq~~----------~R~kW-~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         158 IKNLKFRMFDVGGQRS----------ERKKW-IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ecceEEEEECCCCCcc----------cchhH-HHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            4567889999999543          11222 2346788999999999831        0122233444445444332  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 022188          136 VFDYMIVVFTGGDDLE  151 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~~  151 (301)
                      ...|+++++||.|...
T Consensus       227 ~~~pill~~NK~D~f~  242 (317)
T cd00066         227 ANTSIILFLNKKDLFE  242 (317)
T ss_pred             cCCCEEEEccChHHHH
Confidence            2349999999999653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00959 ffh signal recognition particle protein

Probab=98.16  E-value=3.1e-05  Score=69.70  Aligned_cols=72  Identities=21%  Similarity=0.216  Sum_probs=42.3

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.|+||||....   +.....++.....  ...++.+++|+|+..  ........+.+.+..+     ..-+|+||.
T Consensus       182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            456899999997652   3334444444333  235788899999862  1222333344433332     356789999


Q ss_pred             CCCC
Q 022188          148 DDLE  151 (301)
Q Consensus       148 D~~~  151 (301)
                      |...
T Consensus       250 D~~~  253 (428)
T TIGR00959       250 DGDA  253 (428)
T ss_pred             cCcc
Confidence            9653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.14  E-value=4e-05  Score=58.79  Aligned_cols=29  Identities=31%  Similarity=0.355  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK   46 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~   46 (301)
                      ++-.++|+|++|+|||||++.|.|...+.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~   53 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD   53 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            34689999999999999999999976533

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.13  E-value=1.8e-05  Score=62.08  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~   47 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~   54 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKPDS   54 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            456899999999999999999999875433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>smart00275 G_alpha G protein alpha subunit

Probab=98.13  E-value=2.3e-05  Score=68.82  Aligned_cols=75  Identities=12%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+||..|-..          +...| ..++.++++++||++.++-        ........+..+...+..+  
T Consensus       181 ~~~~~~~~~DvgGqr~----------~R~kW-~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      181 VKKLFFRMFDVGGQRS----------ERKKW-IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             ECCeEEEEEecCCchh----------hhhhH-HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            4567788999999433          11222 3356788999999999831        0122233444555554433  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 022188          136 VFDYMIVVFTGGDDLE  151 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~~  151 (301)
                      ...|++|++||.|...
T Consensus       250 ~~~piil~~NK~D~~~  265 (342)
T smart00275      250 ANTSIILFLNKIDLFE  265 (342)
T ss_pred             cCCcEEEEEecHHhHH
Confidence            2349999999999653

Subunit of G proteins that contains the guanine nucleotide binding site

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.13  E-value=2.2e-05  Score=61.74  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSG   56 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4568999999999999999999998764444

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.11  E-value=5.5e-05  Score=65.38  Aligned_cols=129  Identities=15%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------CcceeeEeEEEEe-----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---------------GVTKTCEMKTTVL-----------------   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~---------------~~t~~~~~~~~~~-----------------   65 (301)
                      ....+++.|+..+|||||+-+|+--..- .+....               +.......+.+..                 
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            3478999999999999999887532211 111000               1111222222210                 


Q ss_pred             ---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188           66 ---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                         ..+..+.++||.|...      .+...+...   .-..+|-.++++-++++.+...++-+-.+..+   +.  |+++
T Consensus       195 vv~~aDklVsfVDtvGHEp------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--PviV  260 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEP------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVIV  260 (527)
T ss_pred             hhhhcccEEEEEecCCccH------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEEE
Confidence               0135678999999443      112222222   23578999999999988888887766655443   33  9999


Q ss_pred             EEeCCCCCCCccccHHHHhcc
Q 022188          143 VFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus       143 v~nk~D~~~~~~~~~~~~~~~  163 (301)
                      ++||+|...+  +.+......
T Consensus       261 vvTK~D~~~d--dr~~~v~~e  279 (527)
T COG5258         261 VVTKIDMVPD--DRFQGVVEE  279 (527)
T ss_pred             EEEecccCcH--HHHHHHHHH
Confidence            9999998876  555554443

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.10  E-value=2e-05  Score=63.04  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRPPASG   55 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998764444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.08  E-value=2.8e-06  Score=76.27  Aligned_cols=127  Identities=18%  Similarity=0.102  Sum_probs=67.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeC-------CCCCCCCCCcHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDT-------PGLFDLSAGSEFVGK   91 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt-------PG~~~~~~~~~~~~~   91 (301)
                      .-+|++|||+|+|||||++.++|...+..|............+..   ....-.-.|-       |-+.+     ..-.+
T Consensus       416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q---h~~e~ldl~~s~le~~~~~~~~-----~~~~e  487 (614)
T KOG0927|consen  416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ---HLAEQLDLDKSSLEFMMPKFPD-----EKELE  487 (614)
T ss_pred             ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh---hhHhhcCcchhHHHHHHHhccc-----cchHH
Confidence            368999999999999999999999887766554433222221111   0000011111       11111     01112


Q ss_pred             HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE----EeCCCCCCCccccHHHHhc
Q 022188           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv----~nk~D~~~~~~~~~~~~~~  162 (301)
                      ++...+..+  +.++-.-++... .++.+++.++-+.......    |.+++    +|+.|...-  ..+.+++.
T Consensus       488 ~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiN  553 (614)
T KOG0927|consen  488 EMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAIN  553 (614)
T ss_pred             HHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHh
Confidence            333334332  344444555555 7778887766655555444    55555    788885433  33444443

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.08  E-value=5.8e-05  Score=60.98  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..++|+|++|+|||||++.|+|..
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999999976

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.08  E-value=0.00011  Score=70.20  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-+++|+|++|+|||||++.|+|...+.+|
T Consensus       344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G  374 (635)
T PRK11147        344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSG  374 (635)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998654444

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.07  E-value=6.5e-06  Score=64.77  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             eEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       139 ~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .=++|+||.|++.--+..++.+...     .+.+-+  ..+++.      .+.+++.|++++++++...
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~d-----a~~~np--~~~ii~------~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARD-----AKEVNP--EAPIIF------TNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHH-----HHHhCC--CCCEEE------EeCCCCcCHHHHHHHHHhh
Confidence            5678999999875422334444333     222221  234444      5677889999999988653

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.07  E-value=1.8e-05  Score=62.62  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G   57 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG   57 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            3568999999999999999999998764443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.06  E-value=4.1e-06  Score=74.05  Aligned_cols=59  Identities=37%  Similarity=0.499  Sum_probs=38.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      +.+++|+|++|+|||||+|+|+|.....++....    +  .|+......   ..+ ...++||||+..
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~---l~~-~~~l~DtpG~~~  259 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP---LPS-GGLLIDTPGMRE  259 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE---ecC-CCeecCCCchhh
Confidence            4689999999999999999999977655442211    1  122111111   222 236889999765

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.06  E-value=8.4e-05  Score=58.84  Aligned_cols=73  Identities=19%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.++||||....   +.....++.....  ...++.+++|+++...  .........+.+..+     ...+++||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence            456889999997642   2222333333222  2347999999998622  222333344433333     256778999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            97654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.06  E-value=5.1e-06  Score=71.48  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEE--EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      +-.++|+|++|||||||+++|+|...+.+|.    .........-  ........++.+.|.++..-.     ..+...+
T Consensus        31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~----i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT-----~~e~l~~  101 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGE----ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT-----VRENLEF  101 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCcCCCceE----EEEcCEeCccCHHHHHhheEEEccCCCCCcccc-----HHHHHHH
Confidence            4679999999999999999999987743331    1111111000  001223457788887665322     2233333


Q ss_pred             HhccCCCc--------cEEEEEE------ec-CCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           97 LGMAKDGI--------HAFLVVF------SV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        97 ~~~~~~~~--------~~il~v~------~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      +...+...        +-++-.+      +- -..++.+.++.+.....+++.    |-++++
T Consensus       102 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~----P~lliL  160 (293)
T COG1131         102 FARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD----PELLIL  160 (293)
T ss_pred             HHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC----CCEEEE
Confidence            33222211        1111111      10 136788888888888887776    544543

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.04  E-value=4.8e-06  Score=72.08  Aligned_cols=64  Identities=28%  Similarity=0.381  Sum_probs=46.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (301)
                      ...++++|+|.+|+||||+||+|.....-..|. ..+.|+..+..    .-+..+.|+|.||+.-....
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV----~Ldk~i~llDsPgiv~~~~~  313 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEV----KLDKKIRLLDSPGIVPPSID  313 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhe----eccCCceeccCCceeecCCC
Confidence            455899999999999999999999877644443 23455554433    34677899999998765443

>TIGR01069 mutS2 MutS2 family protein

Probab=98.03  E-value=0.00018  Score=69.75  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|+|+||+|||||++++.+.
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHH
Confidence            68999999999999999999876

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.00  E-value=3.5e-05  Score=61.10  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPTSG   57 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            3468999999999999999999998764443

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.98  E-value=0.00013  Score=60.14  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999998654333

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.98  E-value=6.4e-05  Score=57.86  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +|+++|++|+||||++..+...
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~   22 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITA   22 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999988653

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.97  E-value=8e-05  Score=63.64  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC-------------ccccCC--------CCCcceeeEeEEE------------
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA-------------FKASAG--------SSGVTKTCEMKTT------------   63 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~-------------~~~~~~--------~~~~t~~~~~~~~------------   63 (301)
                      +.+..|+++|-||+||||.+-.|.....             |..+..        ..++..-...+..            
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            3467899999999999999988753211             110000        0011000000000            


Q ss_pred             EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh---ccC-CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188           64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---MAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (301)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (301)
                      -...+..+.++||.|-....   ..+..++.+...   ... ..||-+++++|+..+-  ......+.+.+..+-     
T Consensus       217 Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq--nal~QAk~F~eav~l-----  286 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ--NALSQAKIFNEAVGL-----  286 (340)
T ss_pred             HHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh--hHHHHHHHHHHhcCC-----
Confidence            00125688999999976643   233444444433   222 3467799999998332  223344556665553     


Q ss_pred             EEEEEeCCCCC
Q 022188          140 MIVVFTGGDDL  150 (301)
Q Consensus       140 ~ilv~nk~D~~  150 (301)
                      .-+++||+|..
T Consensus       287 ~GiIlTKlDgt  297 (340)
T COG0552         287 DGIILTKLDGT  297 (340)
T ss_pred             ceEEEEecccC
Confidence            45889999954

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.96  E-value=4.5e-05  Score=68.12  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -.-+++|.||||||||++.|.|...+++|
T Consensus        31 eIHaLLGENGAGKSTLm~iL~G~~~P~~G   59 (501)
T COG3845          31 EIHALLGENGAGKSTLMKILFGLYQPDSG   59 (501)
T ss_pred             cEEEEeccCCCCHHHHHHHHhCcccCCcc
Confidence            45699999999999999999999886665

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.95  E-value=0.00016  Score=59.14  Aligned_cols=31  Identities=26%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-+|+|+|+||||||||++.|.|...+++|
T Consensus        52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134          52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            3568999999999999999999998875555

>cd01858 NGP_1 NGP-1

Probab=97.95  E-value=3.3e-05  Score=60.18  Aligned_cols=90  Identities=9%  Similarity=0.041  Sum_probs=57.6

Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (301)
                      +...+|++++|+|+..++...+..+.+.+... ..  ..|+++|+||+|+...  ..+..++..        +....  .
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~--------~~~~~--~   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI--------LSKEY--P   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH--------HhcCC--c
Confidence            34567999999999866666666666666543 11  1389999999998754  333333332        11111  1


Q ss_pred             eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .   . ....|+..+.++++|++.+...+
T Consensus        70 ~---~-~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          70 T---I-AFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             E---E-EEEeeccccccHHHHHHHHHHHH
Confidence            1   1 12367778889999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=9.1e-05  Score=65.32  Aligned_cols=29  Identities=21%  Similarity=0.383  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -||+||||+|+|||||+..|+|...+..+
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~G  642 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDG  642 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence            58999999999999999999998765444

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.94  E-value=4.3e-05  Score=60.84  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            3468999999999999999999998764443

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.93  E-value=0.00019  Score=58.99  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-+++|+|++|+|||||++.|+|.....+|
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            3568999999999999999999998764444

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.7e-05  Score=69.44  Aligned_cols=31  Identities=32%  Similarity=0.380  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++.+++++|++|+|||||++.|+|......|
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G  376 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQG  376 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence            4578999999999999999999998775444

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.93  E-value=0.00014  Score=58.72  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..++|+|++|+|||||++.|.|..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999999999999964

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.92  E-value=0.00014  Score=57.97  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~   47 (301)
                      ++-.++|+|++|+|||||++.|+|......
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~   53 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSS   53 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            456899999999999999999999765433

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=97.92  E-value=0.00032  Score=59.51  Aligned_cols=174  Identities=12%  Similarity=0.126  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHhccC--CCccEEEEEEecCCCCCH--H----------HHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           86 SEFVGKEIVKCLGMAK--DGIHAFLVVFSVTNRFSQ--E----------EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~il~v~~~~~~~~~--~----------~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      +...+..+...+....  ..++++|+++++..-+..  .          -+..+..+...+|..+  ||.+|+||+|.+.
T Consensus         6 d~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~--PVYvv~Tk~D~l~   83 (266)
T PF14331_consen    6 DAAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRL--PVYVVFTKCDLLP   83 (266)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCC--CeEeeeECCCccc
Confidence            3445677788877653  467999999998721111  1          1456667777788777  9999999999985


Q ss_pred             CccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhH
Q 022188          152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKK  231 (301)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
                      .    +.+|... .+...++  ..+| -.++.........  ...+.+.++.+...+..        .+.......    
T Consensus        84 G----F~ef~~~-L~~~~r~--q~lG-~t~~~~~~~~~~~--~~~~~~~~~~l~~~L~~--------~~~~~l~~~----  141 (266)
T PF14331_consen   84 G----FDEFFSD-LSEEERE--QVLG-FTFPYDEDADGDA--WAWFDEEFDELVARLNA--------RVLERLAQE----  141 (266)
T ss_pred             C----HHHHHHh-CCHHHHh--CCcc-cccCCccccccch--HHHHHHHHHHHHHHHHH--------HHHHHHHhh----
Confidence            4    7777665 3322221  1112 1111111111100  01233333332222211        000000000    


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCccccchh
Q 022188          232 AEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVI  297 (301)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (301)
                               .    .......--.+-.+++.++..+...+..+...- .....++-+|.||||+..
T Consensus       142 ---------~----~~~~r~~l~~FP~ql~~L~~~L~~fl~~~f~~~-~~~~~~~lRGvYftS~~q  193 (266)
T PF14331_consen  142 ---------R----DAERRAALFSFPRQLAALRPPLREFLEELFRPN-PYQEPPLLRGVYFTSATQ  193 (266)
T ss_pred             ---------c----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCeeeeeeeecCcc
Confidence                     0    000001112256777888888888888887744 455559999999999753

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=2.4e-05  Score=65.48  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=90.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEE-----------------------------EE----
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT-----------------------------TV----   64 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~-----------------------------~~----   64 (301)
                      .++|+-+|+.-.||||+++++.|.....-. ......|....+..                             ..    
T Consensus        38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~  117 (466)
T KOG0466|consen   38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC  117 (466)
T ss_pred             eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence            478999999999999999999885421100 00111111111100                             00    


Q ss_pred             ---eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC----CCCHHHHHHHHHHHHhhCcccc
Q 022188           65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----RFSQEEETAVHRLPNLFGKNVF  137 (301)
Q Consensus        65 ---~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----~~~~~~~~~l~~l~~~~~~~~~  137 (301)
                         ..--+++.++|+||..-           +...+.....-.|+.++++.+..    +-+.+....++.++-       
T Consensus       118 ~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-------  179 (466)
T KOG0466|consen  118 EGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-------  179 (466)
T ss_pred             CCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-------
Confidence               00014678999999322           11111111122377788877662    333333444443332       


Q ss_pred             CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ++++++-||+|+...  ..-.+..++     +..++...   +.++++      .||.-+.+++-+.++|-+.++.
T Consensus       180 khiiilQNKiDli~e--~~A~eq~e~-----I~kFi~~t~ae~aPiiP------isAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKE--SQALEQHEQ-----IQKFIQGTVAEGAPIIP------ISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             ceEEEEechhhhhhH--HHHHHHHHH-----HHHHHhccccCCCceee------ehhhhccChHHHHHHHHhcCCC
Confidence            289999999998865  222222222     44444332   345555      7777788999999999888764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.89  E-value=1.4e-05  Score=63.77  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188            2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +++.+.++.++....  +-..+|+||||+|||||++.|+|+..+.+|
T Consensus        12 ~Gr~ll~~vsl~~~p--Gev~ailGPNGAGKSTlLk~LsGel~p~~G   56 (259)
T COG4559          12 AGRRLLDGVSLDLRP--GEVLAILGPNGAGKSTLLKALSGELSPDSG   56 (259)
T ss_pred             ecceeccCcceeccC--CcEEEEECCCCccHHHHHHHhhCccCCCCC
Confidence            355566666655433  467899999999999999999998875554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.89  E-value=6.6e-05  Score=60.99  Aligned_cols=26  Identities=31%  Similarity=0.572  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++-.++|+|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999973

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.87  E-value=1.2e-05  Score=65.92  Aligned_cols=41  Identities=27%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188            6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +.++.++.-.  .+-.|+|+|++|+|||||+|.|.|-..+.+|
T Consensus        18 vl~~i~L~v~--~GEfvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          18 VLEDINLSVE--KGEFVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             EeccceeEEC--CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3344444332  3468999999999999999999998876655

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.87  E-value=1.4e-05  Score=62.24  Aligned_cols=31  Identities=32%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+.+++|+|++|+|||||+|.|.|-..+.+|
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G   54 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG   54 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence            3468999999999999999999998775554

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.86  E-value=0.00014  Score=59.17  Aligned_cols=23  Identities=30%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.+++|+|++|+|||||+++|.+
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            36899999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.85  E-value=0.00043  Score=56.22  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+++|+|+||+|||||+++|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            579999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.84  E-value=4.1e-06  Score=68.15  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+..++++||||+|||||+|.|+|...+.+|
T Consensus        29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G   59 (250)
T COG0411          29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG   59 (250)
T ss_pred             CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence            3568999999999999999999998875554

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=5.9e-05  Score=65.29  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-------------CccccCCCC----CcceeeEeEEE-Ee--------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK-------------AFKASAGSS----GVTKTCEMKTT-VL--------------   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~-------------~~~~~~~~~----~~t~~~~~~~~-~~--------------   65 (301)
                      .+-.|.++|-.|+||||.+-.+.-..             .|..+....    ..-..+..+.. ..              
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            34578999999999999998765321             111111000    01111111111 10              


Q ss_pred             -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                       ..+..+.|+||.|-+.   .+..+.+++.....  .-.||-+|+|+|++-+...  ....+.+++..+.     .-+++
T Consensus       180 Kke~fdvIIvDTSGRh~---qe~sLfeEM~~v~~--ai~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vdv-----g~vIl  247 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHK---QEASLFEEMKQVSK--AIKPDEIIFVMDASIGQAA--EAQARAFKETVDV-----GAVIL  247 (483)
T ss_pred             HhcCCcEEEEeCCCchh---hhHHHHHHHHHHHh--hcCCCeEEEEEeccccHhH--HHHHHHHHHhhcc-----ceEEE
Confidence             1256889999999665   34555666665544  3479999999999833222  2233445544332     45788


Q ss_pred             eCCCCCC
Q 022188          145 TGGDDLE  151 (301)
Q Consensus       145 nk~D~~~  151 (301)
                      ||+|...
T Consensus       248 TKlDGha  254 (483)
T KOG0780|consen  248 TKLDGHA  254 (483)
T ss_pred             EecccCC
Confidence            9999653

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.79  E-value=1.8e-05  Score=60.04  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +..++|+|++|+|||||+++|+|......|
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G   40 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSG   40 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred             CCEEEEEccCCCccccceeeeccccccccc
Confidence            467999999999999999999998764333

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.78  E-value=0.00028  Score=61.27  Aligned_cols=86  Identities=14%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC--CCCCHH------HHHHHH
Q 022188           55 TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQE------EETAVH  126 (301)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~------~~~~l~  126 (301)
                      |+-.....+. ..+..+.++|.+|-..          +..+|+- ++.+++++|+|+..+  +....+      ..+.++
T Consensus       182 T~GI~e~~F~-~k~~~f~~~DvGGQRs----------eRrKWih-cFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~  249 (354)
T KOG0082|consen  182 TTGIVEVEFT-IKGLKFRMFDVGGQRS----------ERKKWIH-CFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK  249 (354)
T ss_pred             cCCeeEEEEE-eCCCceEEEeCCCcHH----------HhhhHHH-hhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH
Confidence            3333333333 5678899999999322          3344433 678999999999988  222222      233444


Q ss_pred             HHHHhhCcc--ccCeEEEEEeCCCCCCC
Q 022188          127 RLPNLFGKN--VFDYMIVVFTGGDDLED  152 (301)
Q Consensus       127 ~l~~~~~~~--~~~~~ilv~nk~D~~~~  152 (301)
                      .+...+..+  ...++++++||.|+...
T Consensus       250 LF~sI~n~~~F~~tsiiLFLNK~DLFeE  277 (354)
T KOG0082|consen  250 LFESICNNKWFANTSIILFLNKKDLFEE  277 (354)
T ss_pred             HHHHHhcCcccccCcEEEEeecHHHHHH
Confidence            555554433  23489999999997643

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.78  E-value=0.00026  Score=64.53  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=38.9

Q ss_pred             CeEEEEEeCCCCCCC---cc---ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          138 DYMIVVFTGGDDLED---HE---KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       138 ~~~ilv~nk~D~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .|++||.+|.|....   ..   +..-+|+.    ..++.++-.+|.-++.      ++.+...+++-|...|...+.
T Consensus       197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIq----q~LR~~cL~yGAsL~y------ts~~~~~n~~~L~~yi~h~l~  264 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQ----QYLRTFCLKYGASLIY------TSVKEEKNLDLLYKYILHRLY  264 (472)
T ss_pred             cceEEEEecccHHHHHhhhcccchhhHHHHH----HHHHHHHHhcCCeEEE------eeccccccHHHHHHHHHHHhc
Confidence            399999999997532   00   11112332    2367777777877665      444555788888888776654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=4.1e-05  Score=66.49  Aligned_cols=165  Identities=16%  Similarity=0.152  Sum_probs=90.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~   67 (301)
                      ....++.++|+.-+||||....|+...-.-..                             ....+-|+......+. ..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE-te  155 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE-TE  155 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-ec
Confidence            34578999999999999998887643211100                             0011445555555444 45


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-----CCCCHH-HHHHHHHHHHhhCccccCeEE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-----NRFSQE-EETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-----~~~~~~-~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      ...+++.|+||.-.+..       .+    .....++|.-++|+.+.     ..|... +.+--.+|....|..   +.+
T Consensus       156 ~~~ftiLDApGHk~fv~-------nm----I~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~---~lV  221 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVP-------NM----IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVK---HLI  221 (501)
T ss_pred             ceeEEeeccCcccccch-------hh----ccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccc---eEE
Confidence            67899999999655321       11    12234558778887774     123222 333334455555554   899


Q ss_pred             EEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHH
Q 022188          142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL  201 (301)
Q Consensus       142 lv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  201 (301)
                      +++||+|....  ..+..++....     +..++...|.+...--...+.|.-.+.++.+..
T Consensus       222 v~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  222 VLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             EEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            99999996533  22344444443     566666555332211111234444455555443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.76  E-value=2.9e-05  Score=63.40  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+||+|||||||+|.|.|...+.++
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G   60 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG   60 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            3468999999999999999999988775443

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.75  E-value=2e-05  Score=68.23  Aligned_cols=61  Identities=26%  Similarity=0.296  Sum_probs=43.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +-+-|++||.+|+||||+||+|-...+  ....+. +.|...++..    -...|.|||+||+--++.
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkV--CkvAPIpGETKVWQYIt----LmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKV--CKVAPIPGETKVWQYIT----LMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhccc--ccccCCCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence            456799999999999999999998887  333333 3444333321    246789999999866543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.75  E-value=0.0012  Score=58.44  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      +..+-|+||||..+|||||++++....+
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~V   42 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLV   42 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhc
Confidence            3458899999999999999999765443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.74  E-value=3.2e-05  Score=63.33  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4568999999999999999999998654433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.73  E-value=3.4e-05  Score=63.30  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG   42 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG   42 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence            3468999999999999999999998654444

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.72  E-value=3.2e-05  Score=49.42  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      ..+|.|++|+||||++.+|.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999975

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.71  E-value=3.7e-05  Score=64.09  Aligned_cols=31  Identities=23%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999998754443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.71  E-value=3.7e-05  Score=63.30  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence            3468999999999999999999998754443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01859 MJ1464 MJ1464

Probab=97.70  E-value=0.00024  Score=55.21  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      .++|++++|+|+..+....+......+.. .+    .|+++++||+|....  .....         +..+....+.+++
T Consensus        11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~~   74 (156)
T cd01859          11 KESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPVV   74 (156)
T ss_pred             hhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcEE
Confidence            35699999999985554444444333322 23    399999999997533  22211         1112222333444


Q ss_pred             EecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          182 LFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .      .|++++.++++|++.+...++.
T Consensus        75 ~------iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          75 Y------VSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             E------EEccccccHHHHHHHHHHHHhh
Confidence            4      6888889999999999888764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.70  E-value=4e-05  Score=61.72  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999997654333

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.70  E-value=3.9e-05  Score=62.59  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4568999999999999999999998754443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.69  E-value=7.2e-05  Score=70.09  Aligned_cols=31  Identities=26%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++.+++|+|++|+|||||++.|+|...+.+|
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G  390 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG  390 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4578999999999999999999998765544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.69  E-value=4.1e-05  Score=62.85  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3568999999999999999999998654333

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.69  E-value=4.2e-05  Score=63.09  Aligned_cols=31  Identities=23%  Similarity=0.197  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999997654443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.69  E-value=4.7e-05  Score=61.03  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+||+|+|||||+++|-+-..+.+|
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G   57 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG   57 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence            3578999999999999999999988775555

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.69  E-value=0.00053  Score=56.83  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|+||+|||||++.+.|.....++
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G   59 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG   59 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence            3568999999999999999999998876554

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.69  E-value=0.00028  Score=54.88  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ++..++|+|++|+|||||++.|.|...
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.69  E-value=4.3e-05  Score=62.72  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            3468999999999999999999998654443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.69  E-value=4.5e-05  Score=61.69  Aligned_cols=31  Identities=32%  Similarity=0.489  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++++|+||+|||||+++|+|.....+|
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G   58 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSG   58 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            3468999999999999999999998764443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.68  E-value=4.3e-05  Score=62.86  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999997654333

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.67  E-value=4.7e-05  Score=62.86  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998764443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.67  E-value=0.0025  Score=48.86  Aligned_cols=117  Identities=13%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC---ccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCC----------CCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTP----------GLFDLS   83 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtP----------G~~~~~   83 (301)
                      ..+|+|.|+||+||||++..|.....   +..+.   ..|....      .++  ..+.++|..          |+....
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~r   75 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR------EGGKRIGFKIVDLATGEEGILARVGFSRPR   75 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee------cCCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence            47899999999999999988764321   11110   0111110      111  123344433          111111


Q ss_pred             ----CCc-HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           84 ----AGS-EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        84 ----~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                          ..+ +...+-...++..++..+|++++  |--.++......+.+.+.+.+..+.  |++.++.+-+
T Consensus        76 vGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~k--pliatlHrrs  141 (179)
T COG1618          76 VGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGK--PLIATLHRRS  141 (179)
T ss_pred             cceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCCC--cEEEEEeccc
Confidence                112 22333455566666666676554  3333555555677777888776553  8777777654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.67  E-value=4.9e-05  Score=62.33  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++..++|+|++|+|||||++.|+|.....+|
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSG   55 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998654433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.65  E-value=0.00058  Score=62.80  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG   79 (549)
T PRK13545         49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG   79 (549)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence            3568999999999999999999998754443

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.65  E-value=5.1e-05  Score=62.10  Aligned_cols=31  Identities=32%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999997654333

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.65  E-value=4.9e-05  Score=61.99  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3468999999999999999999998654433

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=5.2e-05  Score=61.32  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4568999999999999999999998664443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.65  E-value=4.6e-05  Score=62.43  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   54 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSG   54 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            8999999999999999999997654443

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.65  E-value=5.4e-05  Score=61.37  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            4568999999999999999999998654333

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13695 putative NTPase; Provisional

Probab=97.65  E-value=0.001  Score=52.64  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +|+|+|.+|+|||||+..+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999997654

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.65  E-value=2.2e-05  Score=62.57  Aligned_cols=72  Identities=19%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ....+|.+.|..++...   +..  ...+ ...-..+.++.|+|+. .+... ...-..+...+..    .=++++||+|
T Consensus        85 ~d~IiIE~sG~a~p~~l---~~~--~~~~-~~~~~~~~iI~vVDa~-~~~~~-~~~~~~~~~Qi~~----ADvIvlnK~D  152 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPL---ILQ--DPPL-KEDFRLDSIITVVDAT-NFDEL-ENIPELLREQIAF----ADVIVLNKID  152 (178)
T ss_dssp             -SEEEEEEECSSGGGGH---HHH--SHHH-HHHESESEEEEEEEGT-THGGH-TTHCHHHHHHHCT-----SEEEEE-GG
T ss_pred             cCEEEECCccccccchh---hhc--cccc-cccccccceeEEeccc-ccccc-ccchhhhhhcchh----cCEEEEeccc
Confidence            46789999998775321   100  0111 1123558999999997 44222 1222223333222    4578999999


Q ss_pred             CCCC
Q 022188          149 DLED  152 (301)
Q Consensus       149 ~~~~  152 (301)
                      ....
T Consensus       153 ~~~~  156 (178)
T PF02492_consen  153 LVSD  156 (178)
T ss_dssp             GHHH
T ss_pred             cCCh
Confidence            8755

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.64  E-value=5.2e-05  Score=62.23  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~   47 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~   55 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTS   55 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence            356899999999999999999999765433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.64  E-value=5.4e-05  Score=62.11  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|.|...+.+|
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            4568999999999999999999998654443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.64  E-value=5.5e-05  Score=62.75  Aligned_cols=31  Identities=32%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3568999999999999999999998754443

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.64  E-value=5.6e-05  Score=63.86  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3568999999999999999999998764444

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.64  E-value=5.6e-05  Score=61.99  Aligned_cols=31  Identities=35%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999998654443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.64  E-value=5.6e-05  Score=62.88  Aligned_cols=31  Identities=32%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   55 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG   55 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998754444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.63  E-value=5.9e-05  Score=62.23  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSG   57 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998654443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.63  E-value=6e-05  Score=61.57  Aligned_cols=31  Identities=29%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|.....+|
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAG   57 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998664444

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.63  E-value=6e-05  Score=62.78  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998764443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.62  E-value=6.2e-05  Score=61.14  Aligned_cols=31  Identities=23%  Similarity=0.210  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+..|
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4578999999999999999999998764444

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.62  E-value=6.1e-05  Score=62.19  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|.|...+..|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998754433

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.62  E-value=5.9e-05  Score=63.09  Aligned_cols=31  Identities=29%  Similarity=0.381  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999998754443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.62  E-value=5.9e-05  Score=62.95  Aligned_cols=31  Identities=26%  Similarity=0.223  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   56 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEG   56 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            4568999999999999999999998764444

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.62  E-value=6.4e-05  Score=61.12  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-+++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAG   55 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998754443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.61  E-value=3.8e-05  Score=72.65  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=79.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-------------------------------------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-------------------------------------   61 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-------------------------------------   61 (301)
                      -+.|+|+|..++||||.++++.|..+.+-|..  -+|....+.                                     
T Consensus        29 lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   29 LPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             CCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            36799999999999999999999876554421  111110000                                     


Q ss_pred             ------------------EEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH
Q 022188           62 ------------------TTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE  121 (301)
Q Consensus        62 ------------------~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  121 (301)
                                        .....+-..+++||.||+.....  ....+..++...+..+...++.+++.+... ...-..
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~at  185 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIAT  185 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhhc
Confidence                              00111224678999999876432  224456666666666667778888777665 222223


Q ss_pred             HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       122 ~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...++..++.-+..  .-++-++||+|..+.
T Consensus       186 s~alkiarevDp~g--~RTigvitK~Dlmdk  214 (657)
T KOG0446|consen  186 SPALVVAREVDPGG--SRTLEVITKFDFMDK  214 (657)
T ss_pred             CHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence            44556666653222  268888999997654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.61  E-value=6.4e-05  Score=63.10  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G   54 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEG   54 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence            4568999999999999999999998764444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.61  E-value=6.8e-05  Score=61.12  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   56 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARPDAG   56 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998764444

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=6.4e-05  Score=62.93  Aligned_cols=31  Identities=32%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|.|...+.+|
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998754443

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.61  E-value=6.6e-05  Score=61.37  Aligned_cols=31  Identities=29%  Similarity=0.324  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSG   55 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            4568999999999999999999997654443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.61  E-value=6.3e-05  Score=63.04  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            3468999999999999999999998654443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.60  E-value=6.3e-05  Score=65.20  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   48 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG   48 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4568999999999999999999998764444

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.60  E-value=6.9e-05  Score=61.40  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568999999999999999999998764443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.60  E-value=0.00039  Score=65.87  Aligned_cols=31  Identities=35%  Similarity=0.361  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-+|+|+|++|+|||||++.|+|...+.+|
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G  387 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSG  387 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            4578999999999999999999998775544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.60  E-value=0.00023  Score=64.32  Aligned_cols=29  Identities=38%  Similarity=0.479  Sum_probs=25.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAF   45 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~   45 (301)
                      +.+.+.+|+|++|+|||||+++|.|...+
T Consensus        99 ~~g~rygLiG~nG~Gkst~L~~i~~~e~P  127 (614)
T KOG0927|consen   99 NRGRRYGLIGPNGSGKSTFLRAIAGREVP  127 (614)
T ss_pred             cCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence            34689999999999999999999998763

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.60  E-value=0.00026  Score=57.87  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++...+++|++||||||+++.|+|...+.+|
T Consensus        27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G   57 (300)
T COG4152          27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEG   57 (300)
T ss_pred             CCeEEEeecCCCCCccchHHHHhccCCccCc
Confidence            3577899999999999999999997765444

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.60  E-value=6.5e-05  Score=62.68  Aligned_cols=31  Identities=26%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            3568999999999999999999997654443

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.60  E-value=6.7e-05  Score=62.23  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G   65 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDDGSSG   65 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            4578999999999999999999998754444

>PRK10908 cell division protein FtsE; Provisional

Probab=97.60  E-value=6.9e-05  Score=61.92  Aligned_cols=31  Identities=29%  Similarity=0.295  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAG   57 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4578999999999999999999998754443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.60  E-value=6.5e-05  Score=65.09  Aligned_cols=30  Identities=37%  Similarity=0.403  Sum_probs=26.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++++||+|||||||++.|.|-....+|
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G   58 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG   58 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            467999999999999999999998876555

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.59  E-value=7.1e-05  Score=61.64  Aligned_cols=31  Identities=29%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   60 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG   60 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            3568999999999999999999997654433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=97.59  E-value=7e-06  Score=63.59  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe---eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ---VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+.|+|.-|+|||+++...+....-..-....+......   +-.|+..   .+.|||..|-..           +-..
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalk---Vl~wdd~t~vRlqLwdIagQer-----------fg~m   91 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALK---VLQWDDKTIVRLQLWDIAGQER-----------FGNM   91 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHH---HhccChHHHHHHHHhcchhhhh-----------hcce
Confidence            5799999999999999998764443110000111111111   1124443   457999998443           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHH----hhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPN----LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~----~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      -..+|+.+++..+|+|.+...+.+- ..+.+-+..    -+|.++  |++++-||+|....  ...+      .+..+.+
T Consensus        92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~--a~~~------~~~~~d~  161 (229)
T KOG4423|consen   92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS--AKNE------ATRQFDN  161 (229)
T ss_pred             EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcc--hheeccchhccChH--hhhh------hHHHHHH
Confidence            2346889999999999985554443 222222221    234444  89999999997643  1111      0111222


Q ss_pred             HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .....|     |..-..++++.+.++.+....+.+.+-.+
T Consensus       162 f~keng-----f~gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  162 FKKENG-----FEGWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             HHhccC-----ccceeeeccccccChhHHHHHHHHHHHhh
Confidence            222222     12222378888889998888777665443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.59  E-value=7.2e-05  Score=62.09  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|+|||||+++|+|...+..|
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            3467999999999999999999998764444

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.59  E-value=0.00023  Score=67.27  Aligned_cols=123  Identities=12%  Similarity=0.051  Sum_probs=62.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccce-----eeEeEEEEeeCCeeEEEEeC----CCCCCCCCCcH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTK-----TCEMKTTVLKDGQVVNVIDT----PGLFDLSAGSE   87 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~-----~~~~~~~~~~~~~~~~liDt----PG~~~~~~~~~   87 (301)
                      ++-+++++|++|+||||++|.|.+-..+..|.... +...     ..-...+....+....+-+|    -.++....+++
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e  433 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE  433 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence            45789999999999999999999877644432111 0000     00000000011111111122    12233223344


Q ss_pred             HHHHHHHHHH-hc-cCCCccEEEEEEe-cCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           88 FVGKEIVKCL-GM-AKDGIHAFLVVFS-VTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        88 ~~~~~~~~~~-~~-~~~~~~~il~v~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      ++.+....+- .. ...-|+++=-.+. ....++++++.++...+..+..+   |++++
T Consensus       434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~---~ILIL  489 (567)
T COG1132         434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP---PILIL  489 (567)
T ss_pred             HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC---CEEEE
Confidence            4443322220 00 0122444444443 33589999999999988887764   56555

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.59  E-value=7.2e-05  Score=63.10  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .++-.++|+|++|+|||||++.|+|.....+|
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G   55 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG   55 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            45678999999999999999999998775554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.58  E-value=7.4e-05  Score=62.07  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG   55 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4578999999999999999999998764444

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.58  E-value=7.5e-05  Score=62.08  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   40 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSG   40 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998764444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd01856 YlqF YlqF

Probab=97.58  E-value=0.00055  Score=54.06  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~  168 (301)
                      +.+++...+    ..+|++++|+|+..+....+...+..+   .+    +|+++|+||+|+...  .....++       
T Consensus         9 ~~~~~~~~i----~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~-------   68 (171)
T cd01856           9 ALRQIKEKL----KLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL-------   68 (171)
T ss_pred             HHHHHHHHH----hhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH-------
Confidence            334444444    455999999999855554443333322   12    289999999997633  2222211       


Q ss_pred             HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                        +.+...+..++.      .|+..+.++++|.+.+...++
T Consensus        69 --~~~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          69 --KYFESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             --HHHHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence              222222333444      677788899999999887654

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.58  E-value=7.2e-05  Score=62.32  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3468999999999999999999998653333

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.58  E-value=0.0002  Score=67.98  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++.+++|+|++|+|||||++.|+|.. +.+|
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G  404 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQG  404 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence            45789999999999999999999977 4444

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.58  E-value=7.5e-05  Score=61.86  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3468999999999999999999997654444

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.58  E-value=7.2e-05  Score=63.21  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G   67 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAG   67 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3468999999999999999999998754443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		4e-32
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-27
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-26
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		5e-26
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		8e-26
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		4e-25
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		1e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               + I++FT  DDL D    L D+L  E P+ ++++  +  +R    +NK    A+  
Sbjct: 143 RARSFXILIFTRKDDLGD--TNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
            Q  QLL L+  V+ +N    YT+   + A E   K+ + 
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXYQRAEEEIQKQTQA 238

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++FG++V  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
           +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A G E   
Sbjct: 140 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 193
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
           QV QLL +V  +++++ G  Y++E+   A  LR    E + L+  ++R  +++
Sbjct: 194 QVVQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 245

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L+  +  ++++  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 117/205 (57%), Gaps = 5/205 (2%)
Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
           S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
           TP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
              + IV+FT  +DL  +  +L D++     K L +++  C  R   F+N+ +   +  +
Sbjct: 120 AMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DD 176
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
           QV++L+  +  ++++  G  YT+ L
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGL 201

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
           E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++   
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           + IV+FT  +DL  +  +L D++     K L +++  C  R   F+N+ +   +  +QV+
Sbjct: 120 HTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DDQVK 176
Query: 199 QLLSLVNSVIVQNGGQPYTDEL 220
           +L+  +  ++++  G  YT+ L
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGL 198

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP  F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D+      K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDLNG--GSLXDYXHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L   +  ++ +  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELXDCIEDLLXEKNGDHYTNGL 218

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F      + LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTI 186

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F        LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	4e-68
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-64
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-63
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-06

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  212 bits (540), Expect = 4e-68
 Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 11  KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV 70
           K    S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 71  VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130
           + +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131

Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE 190
           +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +  
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189

Query: 191 AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMG 250
            +  +QV++L+  +  ++++  G  YT+ L       +      D   E  K     L+ 
Sbjct: 190 NQ-DDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSD---ERVKEFKQSLIK 245

Query: 251 QMQESYEDRIKRMAE 265
            M+   +     +AE
Sbjct: 246 YMET--QRSYTALAE 258

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  199 bits (508), Expect = 1e-63
 Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
            P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG 193
           +    +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK     + 
Sbjct: 142 ERARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQ- 197

Query: 194 TEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAE 233
             Q  QLL L+  V+ +N    YT+ + + A E   K+ +
Sbjct: 198 EAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQ 237

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  195 bits (497), Expect = 1e-61
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 22/236 (9%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
           E++++   K         TV++LG+ G GKS+T NS++G +  + S   +   +   +  
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
           T+   G  +N+IDTPGL +    +    + I   L      +  ++    V     + ++
Sbjct: 80  TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136

Query: 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182
             V  +   FGK ++   ++V T        E + E F        LK I      R   
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196

Query: 183 FDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
           F++                          G   +  L+  +  V        + D 
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  172 bits (437), Expect = 1e-52
 Identities = 39/237 (16%), Positives = 82/237 (34%), Gaps = 25/237 (10%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
            ++++             T++++G+ G GKS+T NSI+G +    S   S   +   +  
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   L      I   L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
           +     + + FGK +++  IV  T            ++F   +  + L ++++   +   
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197

Query: 182 LFDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
                                         G   +  L+  +  V +      + D+
Sbjct: 198 DAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDK 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 67/279 (24%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
            + V++ G  G+GK     + +        A              V    +V   +D   
Sbjct: 150 AKNVLIDGVLGSGK-----TWV--------ALD------------VCLSYKVQCKMDF-K 183

Query: 79  LFDLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +F L+  +    + +++        +  +    +      ++       +    L  L  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV---LFDNKTK-- 188
              ++  ++V     ++++  K    F    C      IL     + V   L    T   
Sbjct: 240 SKPYENCLLVL---LNVQN-AKAWNAF-NLSCK-----ILLTTRFKQVTDFLSAATTTHI 289

Query: 189 ---DEAKG--TEQVRQLLSLVNSVIVQN------GGQPYTDELKRGATELRDKKAEVDSL 237
                +     ++V+ LL        Q+         P    L   A  +RD  A  D+ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNW 347

Query: 238 KEYSKREISKLMG---QMQESYEDRIKRMAEMVFFMLHV 273
           K  +  +++ ++     + E  E R K    +  F    
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSA 385

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNV 73
             +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
            D PG+   +   +           + K   + +     ++    ++ +  + +  ++  
Sbjct: 125 WDLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175

Query: 134 KNVFDYMIVVFTGGDDLEDHEK 155
           K        V T  D    +E 
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.97
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.87
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.84
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.84
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.83
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.81
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.81
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.8
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.8
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.8
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.79
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.79
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.79
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.78
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.78
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.78
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.78
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.78
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.78
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.78
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.78
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.77
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.77
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.77
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.77
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.77
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.77
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.76
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.76
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.76
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.76
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.76
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.76
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.76
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.76
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.76
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.76
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.76
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.76
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.76
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.75
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.75
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.75
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.75
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.75
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.75
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.74
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.74
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.74
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.74
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.74
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.74
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.73
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.73
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.73
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.73
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.73
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.73
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.73
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.73
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.73
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.72
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.72
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.72
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.72
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.72
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.71
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.71
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.71
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.71
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.71
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.71
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.71
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.71
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.71
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.7
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.7
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.7
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.7
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.7
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.7
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.7
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.69
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.69
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.69
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.68
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.68
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.68
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.68
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.67
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.67
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.67
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.66
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.65
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.65
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.65
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.64
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.64
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.64
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.64
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.63
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.63
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.62
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.62
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.62
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.61
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.61
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.61
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.61
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.4
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.61
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.6
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.6
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.59
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.58
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.58
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.58
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.57
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.57
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.56
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.56
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.55
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.55
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.55
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.54
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.53
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.53
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.52
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.52
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.51
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.51
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.51
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.51
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.51
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.51
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.5
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.49
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.48
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.44
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.43
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.39
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.32
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.31
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.3
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.23
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.19
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.18
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.15
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.13
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.11
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.11
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.06
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.05
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.03
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.97
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.79
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.78
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.78
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.7
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.69
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.59
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.56
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.55
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.55
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.53
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.48
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.31
2og2_A	359	Putative signal recognition particle receptor; nuc	98.3
2xxa_A	433	Signal recognition particle protein; protein trans	98.28
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.25
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.25
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.18
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.13
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.12
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.07
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.06
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.04
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.85
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.82
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.77
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.77
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.77
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.77
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.76
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.76
1g6h_A	257	High-affinity branched-chain amino acid transport	97.76
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.75
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.75
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.74
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.74
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.72
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.72
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.71
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.71
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.69
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.69
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.69
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.68
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.68
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.67
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.6
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.6
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.59
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.59
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.57
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.56
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.56
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.56
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.56
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.55
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.55
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.55
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.52
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.51
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.5
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.49
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.48
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.47
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.46
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.45
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.43
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.42
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.42
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.4
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.39
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.38
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.37
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.37
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.35
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.35
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.34
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.31
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.31
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.29
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.27
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.27
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.24
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.23
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.21
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.2
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.18
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.15
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.14
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.13
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.13
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.1
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.09
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.08
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.05
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.02
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.02
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.01
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.0
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.0
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.97
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.97
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.96
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.94
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.93
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.92
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.91
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.9
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.9
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.88
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.88
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.86
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.84
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.84
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.82
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.8
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.8
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.77
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.76
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.74
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.72
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.71
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.66
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.66
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.65
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.64
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.63
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.63
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.62
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.62
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.61
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.59
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.59
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.57
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.54
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.51
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.51
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.5
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.5
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.49
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.49
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.48
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.47
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.46
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.45
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.45
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.41
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.4
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.39
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.39
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.39
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.39
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.35
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.34
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.33
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.33
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.33
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.33
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.31
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.31
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.3
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.3
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.28
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.28
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.27
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.26
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.25
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.24
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.24
1via_A	175	Shikimate kinase; structural genomics, transferase	96.23
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.21
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.21
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.18
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.18
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.18
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.17
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.12
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.12
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.09
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.08
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.06
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.05
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.05
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.04
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.04
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.03
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.02
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.02
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.02
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.02
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.01
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.0
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.97
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.97
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.97
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.93
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.93
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.93
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.91
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.9
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.89
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.88
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.87
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.86
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.82
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.81
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.79
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.78
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.62
3bos_A	242	Putative DNA replication factor; P-loop containing	95.61
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.6
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.59
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.58
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.57
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.53
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.5
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.48
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.47
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.43
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.42
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.38
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.36
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.35
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.34
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.32
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.32
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.28
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.27
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.27
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.23
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.14
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.08
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.04
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.0
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.0

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.1e-29  Score=208.98  Aligned_cols=205  Identities=36%  Similarity=0.646  Sum_probs=144.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ...++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... +++..+.||||||+.+...+...+.+++...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            345899999999999999999999998866654444555555555444 7888999999999999877777778888888


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      +..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|....  ..+++++.. ....++.++..|
T Consensus       106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~  181 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIF  181 (239)
T ss_dssp             HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHc
Confidence            888889999999999998 7888888888888887776555699999999998876  677877774 556689999999


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL  227 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  227 (301)
                      +.+++.|++... ++....++.+|+..+..++..+++.+|..+++..+++.
T Consensus       182 ~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~  231 (239)
T 3lxx_A          182 GDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEE  231 (239)
T ss_dssp             SSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-----------
T ss_pred             CCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence            999999887653 44566899999999999999888888998888766653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.96  E-value=4.2e-27  Score=198.48  Aligned_cols=203  Identities=30%  Similarity=0.555  Sum_probs=155.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      +.....+|+|+|++|+|||||+|+|+|...+.....+.+.|........ .+++..+.||||||+.++........+.+.
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG-SWGNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEE-EETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEE-EeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            3445689999999999999999999998876655433334444444433 378899999999999987776666666777


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe-CCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ..+..+++++|++++|+|++ +++..+...+..+.+.++.....|+++++| |+|+..   ..+..++.......+..++
T Consensus        97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHH
Confidence            77777789999999999998 688888888889988887654558888888 999763   3566666543334466788


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHH
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG  223 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~  223 (301)
                      ..++.++..|++ .++||+.+.|+++|++.|...+....+.+|..+.+..
T Consensus       173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~  221 (260)
T 2xtp_A          173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSL  221 (260)
T ss_dssp             HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHH
T ss_pred             HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHH
Confidence            888888776766 7789999999999999999999887666787665543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.87  E-value=2.7e-21  Score=166.53  Aligned_cols=173  Identities=18%  Similarity=0.229  Sum_probs=121.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      +..+...|+|+|.+|||||||+|+|+|.....  .+....|+........... +..+.+|||||+.++.. .....+.+
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~   82 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSM   82 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHH
Confidence            33455899999999999999999999988632  2333334443333344466 88999999999988652 13345555


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhCccccCeEEEEEeCCCCC-CCccccHHHHhcccCCchHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~nk~D~~-~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      ......++..+|++++|+|++++.+..+... +..+... +    .|+++|+||+|.. ..  ..+.+.+.        .
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-~----~pvilV~NK~Dl~~~~--~~~~~~~~--------~  147 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-N----KPVIVVINKIDKIGPA--KNVLPLID--------E  147 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-C----CCEEEEEECGGGSSSG--GGGHHHHH--------H
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-C----CCEEEEEECccCCCCH--HHHHHHHH--------H
Confidence            5555556677899999999997788887665 6666552 2    2999999999987 33  33333333        2


Q ss_pred             HHHHcC--CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          172 ILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       172 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +...++  ..+++      +||.++.|+++|++.+...++..
T Consensus       148 l~~~~~~~~~i~~------vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          148 IHKKHPELTEIVP------ISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             HHHHCTTCCCEEE------CBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             HHHhccCCCeEEE------EeCCCCCCHHHHHHHHHHhCccC
Confidence            334443  34555      78899999999999999988753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.87  E-value=6.9e-21  Score=156.46  Aligned_cols=176  Identities=14%  Similarity=0.161  Sum_probs=117.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH--HHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~   94 (301)
                      ...++|+|+|.+|+|||||+|+|++...........+.|............+..+.||||||+.+...+...  ....+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            346899999999999999999999987321222223344444444333345678999999998775443321  111222


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .........+|++++|+|++++++..+..++..+... +.    |+++|+||+|+...  ..+...+..     +...+.
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l~  174 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-GK----PIHSLLTKCDKLTR--QESINALRA-----TQKSLD  174 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-CC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEeccccCCh--hhHHHHHHH-----HHHHHH
Confidence            2222224567999999999988888888887777652 22    89999999998765  444444433     333333


Q ss_pred             H-------cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 L-------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .       .+.+++.      +|++++.|+++|+++|...++.
T Consensus       175 ~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          175 AYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCc
Confidence            3       2334555      7888999999999999988765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=1e-20  Score=162.17  Aligned_cols=165  Identities=19%  Similarity=0.190  Sum_probs=117.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ...|+|+|++|+|||||+|+|+|.....  .+..+.|+.........+++..+.+|||||+.++.   ..+.+.+.....
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence            3689999999999999999999987632  22233344333333344678899999999998743   244445555666


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc-HHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .++..+|++++|+|++++++..+...++.+....+.   .|+++++||+|+...  .. +.+.+..        +   ++
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~---~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~  145 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP  145 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCC---CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence            678899999999999978888877776777654322   399999999998754  22 3222222        1   12


Q ss_pred             -CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       ..+++      +||+++.++++|++.+...++.
T Consensus       146 ~~~~~~------iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          146 EAEPRM------LSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             TSEEEE------CCTTCHHHHHHHHHHHHTTCCB
T ss_pred             cCcEEE------EeCCCCCCHHHHHHHHHHhccc
Confidence             23343      7889999999999999887754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=5.4e-20  Score=147.83  Aligned_cols=170  Identities=16%  Similarity=0.244  Sum_probs=107.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|++|+|||||+|+|++...........+.|.......   . +..+.+|||||+.+...+... ...+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~   95 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWGRM   95 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHHHH
Confidence            3568999999999999999999998763222222233343333221   2 347899999998876554321 1222222


Q ss_pred             Hh---ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           97 LG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        97 ~~---~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ..   .....+|++++|+|++++.+..+...+.++... +  .  |+++|+||+|+...  ..+......     +...+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~--~--p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~  163 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G--I--PVIVIATKADKIPK--GKWDKHAKV-----VRQTL  163 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence            22   223456999999999978888877766776552 2  2  99999999998765  445443333     33322


Q ss_pred             H-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      . ..+.+++.      +|++++.+++++++++.+.++
T Consensus       164 ~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          164 NIDPEDELIL------FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TCCTTSEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccCCCceEE------EEccCCCCHHHHHHHHHHHhc
Confidence            2 12345555      788889999999999977653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.84  E-value=3.5e-19  Score=142.81  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH--HHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~   94 (301)
                      ....+|+|+|++|+|||||+|+|++....... ...+.|......    ..+..+.+|||||+.........  ....+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            34589999999999999999999998742222 222333332221    23456889999998765433211  112222


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .........+|++++|+|++.+.+......+.++... +.    |+++|+||+|+...  .........     +.....
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~  163 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-NI----PFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS  163 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence            2222234677999999999877777777777777654 22    99999999998765  455554444     455555


Q ss_pred             HcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+ .+++.      +|++++.+++++++++.+.+..
T Consensus       164 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          164 KYGEYTIIP------TSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred             hcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence            433 35555      7888999999999999887653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.84  E-value=5.6e-20  Score=154.89  Aligned_cols=154  Identities=24%  Similarity=0.311  Sum_probs=111.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+|+|++|+|||||+|+|+|........ ..+.|......... +++..++||||||+.++........+.+..++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            45899999999999999999999987533322 22334444333333 68889999999999887665555555555554


Q ss_pred             hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                        ...++|++++|++++ .+++..+..+++.+.+.++...+.|+++|+||+|........+++++.. ....+..++..+
T Consensus       113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~  189 (262)
T 3def_A          113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG  189 (262)
T ss_dssp             --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence              245789999998887 4677778889999999888777779999999999864444677777764 333455555544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.83  E-value=3.1e-19  Score=150.99  Aligned_cols=196  Identities=21%  Similarity=0.335  Sum_probs=127.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+++|.+|+|||||+|+|++........ ..+.|......... ..+..+.+|||||+.++........+.+..++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            35899999999999999999999987633322 12233333333333 67889999999999886554444444443332


Q ss_pred             hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                        ..+++|+++||++++ .+++..+..++..+...++.+.+.|+++|+||+|........+++++.. ....++..+...
T Consensus       116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~  192 (270)
T 1h65_A          116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG  192 (270)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence              246789999998886 3677778888899988888765569999999999875533467777654 333344443321


Q ss_pred             -C---------CceEEecCCCccc---------ccchhHHHHHHHHHHHHHhhcCCCCCch
Q 022188          177 -D---------NRCVLFDNKTKDE---------AKGTEQVRQLLSLVNSVIVQNGGQPYTD  218 (301)
Q Consensus       177 -~---------~~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~~~~~~~~~~~  218 (301)
                       +         .++.+..+.....         .+.......|+..|...+...+...+.+
T Consensus       193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d  253 (270)
T 1h65_A          193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD  253 (270)
T ss_dssp             TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred             hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence             1         2334433332111         1122346689999998887765555433

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.81  E-value=2.8e-19  Score=151.59  Aligned_cols=173  Identities=17%  Similarity=0.214  Sum_probs=101.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeeEeEEEE-eeCC--eeEEEEeCCCCCCCCCCc---H
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGS---E   87 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~-~~~~--~~~~liDtPG~~~~~~~~---~   87 (301)
                      ...+|+|+|++|+|||||+|+|++...+.....    ....|+........ .+++  ..++||||||+.+.....   .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            347999999999999999999999887655421    00222222222222 1333  388999999997754332   1


Q ss_pred             HHH----HHHHHHHhc---------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           88 FVG----KEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        88 ~~~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      .+.    .++..++..         ...++|+++|+++.+ .++...+..+++.+..  +    .|+++|+||+|.... 
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~----~pvi~V~nK~D~~~~-  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--K----VNIIPLIAKADTLTP-  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--T----SCEEEEESSGGGSCH-
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--c----CCEEEEEeccCCCCH-
Confidence            121    222233321         123578999999776 5788888887777765  2    299999999998765 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                       ..+..+...     +...+...+.+++.      .++.++.++.+++++|...++
T Consensus       160 -~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          160 -EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             -HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCS
T ss_pred             -HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCC
Confidence             555555554     56666666766655      456677899999999988765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.81  E-value=1.2e-19  Score=143.11  Aligned_cols=163  Identities=20%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+|+|++|+|||||+|+|++........ ..+.|.......+ ..++..+.+|||||+.+...   ..........
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHI-HIDGMPLHIIDTAGLREASD---EVERIGIERA   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEE-EETTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEE-EECCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence            34789999999999999999999876421111 1222322222222 35677899999999876432   1111111111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ...+..+|++++|+|++++.+.....++..+.+......  |+++|+||+|+...  . . ++ .           ...+
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--p~ilv~NK~Dl~~~--~-~-~~-~-----------~~~~  139 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL--PITVVRNKADITGE--T-L-GM-S-----------EVNG  139 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTC--CEEEEEECHHHHCC--C-C-EE-E-----------EETT
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCC--CEEEEEECccCCcc--h-h-hh-h-----------hccC
Confidence            223567799999999986665555566666665443223  99999999996432  0 0 00 0           0012


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..++.      +||+++.+++++++++...+.
T Consensus       140 ~~~~~------~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          140 HALIR------LSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             EEEEE------CCTTTCTTHHHHHHHHHHHC-
T ss_pred             CceEE------EeCCCCCCHHHHHHHHHHHhh
Confidence            23333      889999999999999987654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.80  E-value=4.7e-19  Score=140.05  Aligned_cols=164  Identities=17%  Similarity=0.184  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|++|+|||||+|++++........  .+.+.......+. .++..+.+|||||.......           
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-----------   71 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVT-VNDKKITFLDTPGHEAFTTM-----------   71 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSCS-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEE-eCCceEEEEECCCCHHHHHH-----------
Confidence            345899999999999999999999877533221  1222222222233 57788999999997664321           


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ....+..+|++++|+|++++........+..+...   ..  |+++|+||+|+.......+...+.. .    ..+....
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~---~~--p~ilv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~  141 (178)
T 2lkc_A           72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAA---NV--PIIVAINKMDKPEANPDRVMQELME-Y----NLVPEEW  141 (178)
T ss_dssp             CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG---SC--CEEEEEETTTSSCSCHHHHHHHHTT-T----TCCBTTT
T ss_pred             HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC---CC--CEEEEEECccCCcCCHHHHHHHHHh-c----CcChhHc
Confidence            12346788999999999866666666555544321   22  8999999999865411122222221 0    0001111


Q ss_pred             C--CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 D--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +  ..++.      +||+++.+++++++++...+..
T Consensus       142 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          142 GGDTIFCK------LSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             TSSEEEEE------CCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccEEE------EecCCCCCHHHHHHHHHHhhhh
Confidence            1  13343      7889999999999999877654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.80  E-value=2.8e-18  Score=141.51  Aligned_cols=174  Identities=16%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|.+|+|||||+|+|++.......  ....|....... ....+..+.+|||||+.+..........  ...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~  101 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGH-FDHKLNKYQIIDTPGLLDRAFENRNTIE--MTT  101 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEE-EEETTEEEEEEECTTTTTSCGGGCCHHH--HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeee-eecCCCeEEEEECCCCcCcccchhhhHH--HHH
Confidence            45689999999999999999999987753221  122233333332 2256788999999998653321111000  111


Q ss_pred             HhccCCCccEEEEEEecCCCCCHH---HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQE---EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      +...+..+|++++|+|++++.+..   ...++..+...+.   ..|+++|+||+|+...  ..+......    .+..+.
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~~  172 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQIL  172 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHHHH----HHHHHH
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc--hhhHHHHHH----HHHHHH
Confidence            122245679999999998554422   2344444443322   2399999999998654  222111100    133444


Q ss_pred             HHcC--CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+  ..++.      +||+++.+++++++++...+..
T Consensus       173 ~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          173 DNVKNPIKFSS------FSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             HHCCSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HhcCCCceEEE------EecccCCCHHHHHHHHHHHHHH
Confidence            4444  44555      7888999999999998776643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.80  E-value=7.7e-19  Score=147.13  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~   97 (301)
                      ++|+|+|.+|+|||||+|+|+|.......  .++.|.......+. .++..+.+|||||+++......  ...+.+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            57999999999999999999998753322  23445444444333 6788999999999988653210  1112222221


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      . ....+|++++|+|+++ . .....+...+.+.   .  .|+++++||+|....  ..        .......+...++
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~---~--~pvilv~NK~Dl~~~--~~--------~~~~~~~l~~~lg  140 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL---G--KPVVVALNMMDIAEH--RG--------ISIDTEKLESLLG  140 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS---C--SCEEEEEECHHHHHH--TT--------CEECHHHHHHHHC
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc---C--CCEEEEEEChhcCCc--CC--------cHHHHHHHHHHcC
Confidence            1 1267899999999983 1 2222333333332   2  399999999997533  11        1111344555567


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .++++      +||+++.|+++|++++...
T Consensus       141 ~~vi~------~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 CSVIP------IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEEE------CBGGGTBSHHHHHHHHHTC
T ss_pred             CCEEE------EECCCCCCHHHHHHHHHhh
Confidence            77777      8999999999999999877

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.80  E-value=1.4e-18  Score=136.22  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=100.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++...........+.+  ....... .++  ..+.+|||||....           ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~   70 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLN-IGGKRVNLAIWDTAGQERF-----------HA   70 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEE-ECCEEEEEEEEECCCcHhh-----------hh
Confidence            34799999999999999999999776432222122221  1111222 333  36789999995442           22


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+....+...  |+++|+||+|+........++         ...+..
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~  139 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAE  139 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence            23345678899999999984433232 345555555443333  999999999976431111111         334555


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+..++.      .|++++.+++++++++.+.+.
T Consensus       140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence            55666665      788889999999999987654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.80  E-value=2.6e-18  Score=145.50  Aligned_cols=180  Identities=17%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|+|+|... ..+ ...+.|.......+. ..+..+.+|||||+.+.....  ....+.+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            37899999999999999999999874 222 223445544444333 567889999999998865211  1111222222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      . .....+|++++|+|+++ . .....+...+.+. +.    |+++++||+|....  ..+        ......+....
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~~----p~ivv~NK~Dl~~~--~~~--------~~~~~~l~~~l  141 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-GI----PCIVALNMLDIAEK--QNI--------RIEIDALSARL  141 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-TC----CEEEEEECHHHHHH--TTE--------EECHHHHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-CC----CEEEEEECccchhh--hhH--------HHHHHHHHHhc
Confidence            1 12367899999999983 2 2233444444443 32    99999999996533  111        11134455556


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC--CCCchHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG--QPYTDELKRGAT  225 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~--~~~~~~~~~~~~  225 (301)
                      +.++++      .||+++.|+++|++.+...++....  ..|..++.....
T Consensus       142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~~  186 (274)
T 3i8s_A          142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEAD  186 (274)
T ss_dssp             TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHHH
T ss_pred             CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHHH
Confidence            777776      8899999999999999887654321  235555544433

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.80  E-value=1.8e-18  Score=134.34  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+++|++|+|||||+|++++....... ...+.+......... .++..+.+|||||.........    .+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDKWEK----KIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEE-ETTEEEEEEECGGGCSSSSCCH----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEE-eCCceEEEEECCCCCCccchHH----HHHHHHHH
Confidence            68999999999999999999987642111 112223333333333 5778899999999876432122    22333334


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (301)
                      .+..+|++++|+|++++++..+......+... +  .  |+++|+||+|....  .   +...        .+. ..+. 
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~--~--p~ilv~nK~Dl~~~--~---~~~~--------~~~-~~~~~  136 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G--K--PVILVATKVDDPKH--E---LYLG--------PLY-GLGFG  136 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T--C--CEEEEEECCCSGGG--G---GGCG--------GGG-GGSSC
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C--C--CEEEEEECcccccc--h---HhHH--------HHH-hCCCC
Confidence            46778999999999977887776666666652 2  2  89999999997643  1   1111        111 2333 


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .++.      +|++++.+++++++++.+.+
T Consensus       137 ~~~~------~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          137 DPIP------TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             SCEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred             CeEE------EecccCCChHHHHHHHHHhC
Confidence            4444      88899999999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=1.4e-17  Score=140.88  Aligned_cols=165  Identities=19%  Similarity=0.197  Sum_probs=109.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+|+|++|+|||||+|+|+|... ..+ ...+.|.......+. +.+..+.+|||||+.+.......  +.+... .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-NWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSID--ELIARN-F   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-ECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence            37899999999999999999999875 222 223444444444333 67888999999999886543322  111111 1


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .....+|++++|+|+++ . .....++..+.+. +.   .|+++++||+|+...  .        ........+...++.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~--------~~~~~~~~l~~~lg~  140 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--K--------GAKIDIKKMRKELGV  140 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--H--------TCCCCHHHHHHHHSS
T ss_pred             hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--c--------ccHHHHHHHHHHcCC
Confidence            12367899999999983 2 2222333333332 21   299999999996532  0        011114555566677


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ++++      +|++.+.|+.++++.+...+...
T Consensus       141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          141 PVIP------TNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             CEEE------CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             cEEE------EEeCCCCCHHHHHHHHHHHHhcc
Confidence            7776      88889999999999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.79  E-value=1.4e-18  Score=139.01  Aligned_cols=163  Identities=17%  Similarity=0.130  Sum_probs=103.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      +...+|+|+|++|+|||||+|+|++...........+.+..  ..... ..  ...+.+|||||.......         
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~~~l~Dt~G~~~~~~~---------   87 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTVY-RHDKRIKLQIWDTAGQERYRTI---------   87 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEE--EEEEE-ETTEEEEEEEEECCSCCSSCCS---------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEE--EEEEE-ECCeEEEEEEEeCCCcHHHhhh---------
Confidence            34579999999999999999999987653322222222222  12222 23  347899999997654321         


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                        ...++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+........+         ....+.
T Consensus        88 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~  154 (189)
T 2gf9_A           88 --TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE---------DGRRLA  154 (189)
T ss_dssp             --GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred             --HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH---------HHHHHH
Confidence              2334677899999999984333222 34455555543222  399999999997643101111         134455


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +|++++.+++++++++...+..
T Consensus       155 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          155 DDLGFEFFE------ASAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             HHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence            555666666      7888999999999999876643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.79  E-value=1.2e-18  Score=149.52  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=110.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~   97 (301)
                      ...|+|+|++|+|||||+|+|+|.....  .+..+.|+.........+++..+.++||||+. ..   ...+.+.+....
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~   82 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence            4689999999999999999999987632  22223333333333344678899999999976 21   112222233333


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..++..+|++++|+|++. ++..+...++.+... +    .|+++++||+|..... ..+.+.        +..+....+
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~-~----~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~~  147 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG-K----APVILAVNKVDNVQEK-ADLLPH--------LQFLASQMN  147 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS-S----SCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSC
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc-C----CCEEEEEECcccCccH-HHHHHH--------HHHHHHhcC
Confidence            455688999999999986 888887666655431 2    2999999999986520 222222        233333344


Q ss_pred             C-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 N-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      . .+++      .|++++.++++|++.+...++.
T Consensus       148 ~~~~i~------iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          148 FLDIVP------ISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CSEEEE------CCTTTTTTHHHHHHHHHTTCCB
T ss_pred             cCceEE------EECCCCCCHHHHHHHHHHhCCc
Confidence            3 3444      7888899999999999887764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.79  E-value=4.4e-18  Score=136.99  Aligned_cols=172  Identities=13%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ++.....+|+|+|.+|+|||||+|+|++........   ..|.......+. ..+..+.+|||||....           
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------   76 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFE-KGRVAFTVFDMGGAKKF-----------   76 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEE-ETTEEEEEEEECCSGGG-----------
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEE-eCCEEEEEEECCCCHhH-----------
Confidence            344456899999999999999999999887633111   122222233333 67789999999996542           


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc------cccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK------NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~------~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~  166 (301)
                      ......++..+|++|+|+|++++.+-.. ..++..+......      ....|+++|+||+|+...  ...++.... ..
T Consensus        77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~  153 (199)
T 4bas_A           77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI-LD  153 (199)
T ss_dssp             GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH-HT
T ss_pred             HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH-hc
Confidence            2223345778999999999995443333 2333333222110      012399999999998765  334433332 10


Q ss_pred             chHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                        +..+....+..++.      +|++++.++++++++|.+.+...
T Consensus       154 --~~~~~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          154 --LTTLMGDHPFVIFA------SNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             --HHHHHTTSCEEEEE------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             --chhhccCCeeEEEE------eeCCCccCHHHHHHHHHHHHHHH
Confidence              12222333444554      78889999999999998876553

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=138.22  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=103.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      +...+|+|+|++|+|||||+|+|++......  .....+.......+. .++  ..+.+|||||......          
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   73 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFRT----------   73 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCSS----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhhh----------
Confidence            3458999999999999999999998775322  222333333333333 455  5789999999554322          


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                       ....++..+|++++|+|++++.+... ..++..+.....   ..|+++|+||+|..........+         ...+.
T Consensus        74 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~  140 (181)
T 3tw8_B           74 -ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA  140 (181)
T ss_dssp             -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence             12234677899999999985433333 234445544432   23999999999976441111111         23344


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+.+++.      +|++++.+++++++++...+..
T Consensus       141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          141 GQMGIQLFE------TSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             HHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence            555666666      7888999999999999876643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.79  E-value=1.5e-18  Score=137.06  Aligned_cols=160  Identities=19%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|+|++...........+.+.....  .. .++  ..+.+|||||.....       .....
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~~-------~~~~~   83 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERFR-------AVTRS   83 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGTC-------HHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHhh-------hhHHH
Confidence            4589999999999999999999987653222222222222222  22 233  478999999965421       11222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    +..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+..
T Consensus        84 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~  148 (179)
T 1z0f_A           84 Y----YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILIGNKADLEAQRDVTYEE---------AKQFAE  148 (179)
T ss_dssp             H----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             H----hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHHHHH
Confidence            2    345699999999985433222 344455555433333  999999999986431111111         344555


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+..++.      +|++++.+++++++++.+.+
T Consensus       149 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          149 ENGLLFLE------ASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             HTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            55666666      78888999999999987765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=1.1e-18  Score=139.97  Aligned_cols=167  Identities=21%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ......+|+|+|++|+|||||+|+|++...........+.+......... .....+.+|||||......          
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~----------   87 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHS----------   87 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGG----------
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHh----------
Confidence            33456899999999999999999999876422222222222222211111 2345789999999654211          


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                       ....++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+........++         ...+.
T Consensus        88 -~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~  155 (192)
T 2fg5_A           88 -LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYA  155 (192)
T ss_dssp             -GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             -hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence             11123456799999999985433333 34555555543222  3999999999976421111111         34445


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +|++++.++++++++|.+.+..
T Consensus       156 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          156 ESIGAIVVE------TSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             HTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC-
T ss_pred             HHcCCEEEE------EeCCCCcCHHHHHHHHHHHHHh
Confidence            555666665      7888999999999999876643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.78  E-value=7.5e-19  Score=137.66  Aligned_cols=160  Identities=18%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++...........+.+.....  .. ..  ...+.+|||||.....           .
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~Dt~G~~~~~-----------~   70 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKT--VQ-YQNELHKFLIWDTAGLERFR-----------A   70 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEE--EE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEE--EE-ECCeEEEEEEEcCCCchhhh-----------c
Confidence            3479999999999999999999987753322222222222221  12 23  3578999999975421           1


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .....+..+|++++|+|++++.+... ..++..+........  |+++|.||+|....  ..+..       .....+..
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~  139 (170)
T 1z0j_A           71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDLTDV--REVME-------RDAKDYAD  139 (170)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTS--EEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred             ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECCccccc--cccCH-------HHHHHHHH
Confidence            11123456799999999985433333 345555555423233  89999999998643  11100       11233445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+++.      .|++++.+++++++++.+.+
T Consensus       140 ~~~~~~~~------~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          140 SIHAIFVE------TSAKNAININELFIEISRRI  167 (170)
T ss_dssp             HTTCEEEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred             HcCCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence            55666665      78888999999999997765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.78  E-value=1.6e-17  Score=139.23  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|+|.......  ..+.|.......+. ..+..+.+|||||..+.......  +.+...+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSID--EKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSHH--HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCHH--HHHHHHHH
Confidence            478999999999999999999998754222  23455554444333 56789999999999876543211  12222111


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                       ....+|++++|+|++ .+.. ...++..+.+.   ..  |+++++||+|....  ..        .......+...++.
T Consensus        80 -~~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~~---~~--pvilv~NK~Dl~~~--~~--------i~~~~~~l~~~lg~  141 (258)
T 3a1s_A           80 -LKGDADLVILVADSV-NPEQ-SLYLLLEILEM---EK--KVILAMTAIDEAKK--TG--------MKIDRYELQKHLGI  141 (258)
T ss_dssp             -HHSCCSEEEEEEETT-SCHH-HHHHHHHHHTT---TC--CEEEEEECHHHHHH--TT--------CCBCHHHHHHHHCS
T ss_pred             -hhcCCCEEEEEeCCC-chhh-HHHHHHHHHhc---CC--CEEEEEECcCCCCc--cc--------hHHHHHHHHHHcCC
Confidence             115789999999998 3322 22333333332   22  99999999996533  11        11114555566677


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ++++      +|++++.|+++|++.+.....
T Consensus       142 ~vi~------~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          142 PVVF------TSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence            7776      888899999999999988765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.78  E-value=3.4e-18  Score=134.12  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=100.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+..+|+|+|++|+|||||+|++++......     .+|.......+. +++..+.+|||||....           ...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~-----------~~~   67 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGLTSI-----------RPY   67 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE-ETTEEEEEEEECCCGGG-----------GGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEE-ECCEEEEEEECCCChhh-----------hHH
Confidence            3458999999999999999999987664221     122222223333 56889999999996542           122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH-HHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK-EILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~-~~~~  174 (301)
                      ...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+...  ....+....     +. ....
T Consensus        68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~  139 (171)
T 1upt_A           68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPALK  139 (171)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhcc
Confidence            3345678899999999985544333 223332222110 012399999999998755  223222211     00 0011


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.+++++++++.+.+..
T Consensus       140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          140 DRKWQIFK------TSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TSCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCceEEEE------CcCCCCcCHHHHHHHHHHHHhh
Confidence            11223343      7888999999999999887654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.78  E-value=2.3e-18  Score=136.49  Aligned_cols=162  Identities=22%  Similarity=0.188  Sum_probs=102.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++...........+.+....  ... .+  ...+.+|||||......           
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~Dt~G~~~~~~-----------   76 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQ--TLA-VNDATVKFEIWDTAGQERYHS-----------   76 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEE--EEE-ETTEEEEEEEEECCCSGGGGG-----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEE--EEE-ECCEEEEEEEEeCCCChhhhh-----------
Confidence            457999999999999999999998765332222222222221  122 23  34789999999554211           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .....+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+........++         ...+..
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~  145 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQ  145 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHH
Confidence            11223456799999999985443222 44555555543222  3899999999986441111111         334445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +|++++.++++++++|.+.+..
T Consensus       146 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          146 ENGLFFME------TSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             HTTCEEEE------CCSSSCTTHHHHHHHHHHTCC-
T ss_pred             HcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence            55666665      7888899999999999876543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.78  E-value=5.4e-18  Score=137.05  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=101.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|+|++...........+.+  .....+. .+  ...+.+|||||....           ...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~~   73 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIY-RNDKRIKLQIWDTAGLERY-----------RTI   73 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEE-ETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEE-ECCeEEEEEEEECCCchhh-----------cch
Confidence            4799999999999999999999877533222222222  2122222 23  347899999996542           222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+........+         ....+...
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~  142 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE---------RGRQLADH  142 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH---------HHHHHHHH
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHH
Confidence            3345677899999999984433222 33444554433222  399999999998654111111         13344455


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|++++.++++++++|...+.
T Consensus       143 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          143 LGFEFFE------ASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             HTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred             CCCeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence            5666665      788889999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.78  E-value=1.5e-18  Score=135.93  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|++++...........+.+......... ..+..+.+|||||.....           ....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~-----------~~~~   73 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYH-----------SLAP   73 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhh-----------hhhH
Confidence            4789999999999999999999766432222222222212111111 124578999999965421           1112


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+..+|++++|+|++++.+... ..++..+........  |+++|.||+|+........++         ...+....+
T Consensus        74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~  142 (170)
T 1r2q_A           74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDNS  142 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHTT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCccccccCHHH---------HHHHHHHcC
Confidence            23466799999999984433222 334445544433333  899999999975431111111         233444556


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..++.      +|++++.++++++++|.+.+.
T Consensus       143 ~~~~~------~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          143 LLFME------TSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CEEEE------CCTTTCTTHHHHHHHHHHTSC
T ss_pred             CeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence            66665      788899999999999876553

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.78  E-value=3.2e-18  Score=137.41  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++.......  ....+.......+. .++  ..+.+|||||......       ..  
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-------~~--   82 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT-------IT--   82 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT-------TH--
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh-------hH--
Confidence            4579999999999999999999987653222  22223333333333 444  4689999999654322       11  


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                        ..++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.........         ....+..
T Consensus        83 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~  149 (196)
T 3tkl_A           83 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTKKVVDYT---------TAKEFAD  149 (196)
T ss_dssp             --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred             --HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccccccCHH---------HHHHHHH
Confidence              123456799999999984333222 345555555443333  99999999998654111111         1334555


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +|++++.++++++.++.+.+..
T Consensus       150 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          150 SLGIPFLE------TSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             HTTCCEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCcEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            66667776      7888899999999999877654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.78  E-value=2e-18  Score=138.29  Aligned_cols=177  Identities=15%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCCCCCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEe
Q 022188            1 MGERVVDGDWKPTSPSN---GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVID   75 (301)
Q Consensus         1 ~~~~~~~~~~~~~~~~~---~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liD   75 (301)
                      ||++. -.+|..+.+..   ...+|+|+|++|+|||||+|++++...........+.+  .....+. .++  ..+.+||
T Consensus         1 ~~~~~-~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~i~D   76 (191)
T 2a5j_A            1 MGSSH-HHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVN-IDGKQIKLQIWD   76 (191)
T ss_dssp             ----------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEE-ETTEEEEEEEEC
T ss_pred             CCccc-cccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEE-ECCEEEEEEEEE
Confidence            55554 44444433333   34699999999999999999999876532221111222  2222222 344  4789999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188           76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (301)
Q Consensus        76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~  154 (301)
                      |||........           ..++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.....
T Consensus        77 t~G~~~~~~~~-----------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~--piilv~nK~Dl~~~~~  143 (191)
T 2a5j_A           77 TAGQESFRSIT-----------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRD  143 (191)
T ss_dssp             CTTGGGTSCCC-----------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCC
T ss_pred             CCCchhhhhhH-----------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccCCccc
Confidence            99965533211           112456799999999984332222 344555554433233  9999999999864310


Q ss_pred             ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...++         ...+....+..++.      +|++++.++++++++|.+.+.
T Consensus       144 v~~~~---------~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          144 VKREE---------GEAFAREHGLIFME------TSAKTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             SCHHH---------HHHHHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred             cCHHH---------HHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            11111         23344455666665      788889999999999876654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.78  E-value=1.6e-17  Score=132.24  Aligned_cols=161  Identities=18%  Similarity=0.141  Sum_probs=102.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.......  ....+.......+. .++  ..+.+|||||...           +..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~   74 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FRS   74 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HHH
Confidence            4589999999999999999999977652221  12222222222222 344  4789999999544           222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.........+         ...+..
T Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~  143 (186)
T 2bme_A           75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI--VIILCGNKKDLDADREVTFLE---------ASRFAQ  143 (186)
T ss_dssp             HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHHHHH
Confidence            34455788999999999984333222 234444444433333  999999999975431111111         233445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+..++.      +|++++.+++++++++...+.
T Consensus       144 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          144 ENELMFLE------TSALTGENVEEAFVQCARKIL  172 (186)
T ss_dssp             HTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence            55666665      788889999999999877654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.78  E-value=1.5e-18  Score=156.42  Aligned_cols=180  Identities=18%  Similarity=0.196  Sum_probs=110.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||+|+|+|.......  ....|+.........+++..+.+|||||+.+.....+.+........
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~--~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS--NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeec--CCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4589999999999999999999998753222  22223332222223367888999999998653321100000000000


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (301)
                      ..++..+|++++|+|++++.+..+..++..+.+. +.    |+++++||+|+........++....     +...+... 
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~~  321 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFLD  321 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGGT
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-CC----cEEEEEECccCCCcchHHHHHHHHH-----HHHhcccCC
Confidence            1123456999999999988888887776666542 32    9999999999875521223333222     22222222 


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCC
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~  215 (301)
                      +.+++.      +||+++.++++|++.+...+.......
T Consensus       322 ~~~~~~------~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          322 YAPILF------MSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             TSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             CCCEEE------EecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            345555      889999999999999988876654333

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.77  E-value=5.5e-18  Score=137.36  Aligned_cols=162  Identities=17%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++........  ...+.......+. .++  ..+.+|||||.......          
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~----------   73 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRTI----------   73 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTCC----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHHH----------
Confidence            34799999999999999999999876532221  1222222222222 344  37899999997654321          


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                       ...++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+..
T Consensus        74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~  141 (206)
T 2bcg_Y           74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLVGNKCDLKDKRVVEYDV---------AKEFAD  141 (206)
T ss_dssp             -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHH
Confidence             2234677899999999984433333 334555554433333  999999999986531111111         233445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +|++++.++++++.++...+..
T Consensus       142 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          142 ANKMPFLE------TSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             HTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            55666665      7888899999999999876654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.77  E-value=2.8e-18  Score=137.73  Aligned_cols=162  Identities=12%  Similarity=0.081  Sum_probs=103.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++......    ...|...........++.  .+.+|||||....           ..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~   86 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-----------DR   86 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TT
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-----------HH
Confidence            457999999999999999999998764211    122222222222224444  4599999995442           12


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ....++..+|++++|+|++++.+...  ..++..+..... .  .|+++|+||+|+.......+       .......+.
T Consensus        87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~  156 (194)
T 3reg_A           87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDV-------TKQEGDDLC  156 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCC-------CHHHHHHHH
T ss_pred             HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcc-------cHHHHHHHH
Confidence            23345678899999999985433333  335555554432 2  39999999999764300000       001133455


Q ss_pred             HHcCCc-eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+.. ++.      +|++++.+++++++++.+.+..
T Consensus       157 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          157 QKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             HHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHh
Confidence            555655 665      7889999999999999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=1.1e-17  Score=132.29  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=100.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++........ ....+......... .++.  .+.+|||||....           ..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~-----------~~   75 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQERF-----------RS   75 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHHH-----------HH
Confidence            45899999999999999999999876532211 11112222111112 3443  7899999995442           22


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+..
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~  144 (180)
T 2g6b_A           76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV--ALMLLGNKVDSAHERVVKRED---------GEKLAK  144 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred             HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccCcccccCHHH---------HHHHHH
Confidence            23345677899999999984433222 345555555433233  999999999987541111111         233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.+++++++++...+..
T Consensus       145 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          145 EYGLPFME------TSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            44556665      7888999999999999877654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.77  E-value=1.2e-17  Score=132.42  Aligned_cols=163  Identities=18%  Similarity=0.160  Sum_probs=102.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.......    ..|...........++  ..+.+|||||.......          
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------   70 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------   70 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence            3589999999999999999999965532211    1222222222233455  46689999997764321          


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                       ...++..+|++++|+|++++-+... ..++..+...+.. ...|+++|+||+|+........++         ...+..
T Consensus        71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~  139 (181)
T 3t5g_A           71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE  139 (181)
T ss_dssp             -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence             1234567899999999984333222 2344444333221 123999999999975431111111         344556


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ..+..++.      +|++++.++++++..+...+...
T Consensus       140 ~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~  170 (181)
T 3t5g_A          140 SWNAAFLE------SSAKENQTAVDVFRRIILEAEKM  170 (181)
T ss_dssp             HTTCEEEE------CCTTSHHHHHHHHHHHHHHHHTC
T ss_pred             HhCCcEEE------EecCCCCCHHHHHHHHHHHHHHh
Confidence            66666666      78889999999999998877653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.77  E-value=1.4e-18  Score=136.04  Aligned_cols=160  Identities=14%  Similarity=0.152  Sum_probs=99.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++........  ...+......... .++  ..+.+|||||........          
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~~----------   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTIT----------   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCCC----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhhH----------
Confidence            4789999999999999999999776522221  1112222222222 333  468999999965533211          


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ...+..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.... ...+ .        ...+...
T Consensus        70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~-~~~~-~--------~~~~~~~  136 (170)
T 1g16_A           70 -TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMETRV-VTAD-Q--------GEALAKE  136 (170)
T ss_dssp             -HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTCC-SCHH-H--------HHHHHHH
T ss_pred             -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCCcCc-cCHH-H--------HHHHHHH
Confidence             112456799999999984333222 345555555443233  999999999974320 1111 1        2334445


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +|++++.++++++.++...+..
T Consensus       137 ~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          137 LGIPFIE------SSAKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             HTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence            5666665      7888899999999999887654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.77  E-value=2.9e-18  Score=137.52  Aligned_cols=164  Identities=17%  Similarity=0.187  Sum_probs=97.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      +.....+|+|+|.+|+|||||+|+|++........  ...+.......+. .++  ..+.+|||||....       ...
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-------~~~   91 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVE-LRGKKIRLQIWDTAGQERF-------NSI   91 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGGG-------HHH
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEE-ECCeEEEEEEEeCCCcHHH-------HHH
Confidence            34456799999999999999999999876532221  1222222222222 344  47899999995542       111


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      ...+    +..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...
T Consensus        92 ~~~~----~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilV~NK~Dl~~~~~v~~~~---------~~~  156 (192)
T 2il1_A           92 TSAY----YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETDREITRQQ---------GEK  156 (192)
T ss_dssp             HHHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHH
T ss_pred             HHHH----hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHH
Confidence            2222    345599999999985443333 334455555433233  999999999976431011111         223


Q ss_pred             HHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.... +..++.      +|++++.++++++++|.+.+.
T Consensus       157 ~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          157 FAQQITGMRFCE------ASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             HHHTSTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            33332 444554      788899999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=2e-18  Score=135.13  Aligned_cols=162  Identities=18%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++...........+.+...  .... .++  ..+.+|||||.....           ..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~D~~G~~~~~-----------~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT--QRVT-INEHTVKFEIWDTAGQERFA-----------SL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEE-ETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEE-ECCEEEEEEEEECCCChhhh-----------hh
Confidence            3789999999999999999999776532222112222211  2222 333  478999999965421           11


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+... ..++..+........  |+++++||+|.....  ...+.    .......+...
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~--~~~~v----~~~~~~~~~~~  140 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQEG--GERKV----AREEGEKLAEE  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGSS--CCCCS----CHHHHHHHHHH
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCccccc--cccCC----CHHHHHHHHHH
Confidence            1223457799999999985433333 334455554433333  999999999976431  00000    00112334444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+..++.      .|++++.+++++++++.+.+
T Consensus       141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          141 KGLLFFE------TSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence            5666666      78888999999999987644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=3.1e-18  Score=155.28  Aligned_cols=178  Identities=17%  Similarity=0.232  Sum_probs=115.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC----cHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFVGKE   92 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~----~~~~~~~   92 (301)
                      ....+|+++|.+|+|||||+|+|++...+.... ..+.|.......+ ..++..+.+|||||+.+....    .......
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEE-EETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEE-EECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            356899999999999999999999876533221 1222332222223 367889999999998653221    1111111


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ...    ++..+|++++|+|++.+++..+..++..+.+. +.    |+++|+||+|+........+++...     +...
T Consensus       271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~  336 (456)
T 4dcu_A          271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDH  336 (456)
T ss_dssp             HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred             HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence            111    23456999999999988888888887777662 32    9999999999875422333443333     3333


Q ss_pred             HHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCC
Q 022188          173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPY  216 (301)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~  216 (301)
                      +... +.+++.      +||+++.++++|++.+...+.......-
T Consensus       337 ~~~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~~~~  375 (456)
T 4dcu_A          337 FQFLDYAPILF------MSALTKKRIHTLMPAIIKASENHSLRVQ  375 (456)
T ss_dssp             CGGGTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred             cccCCCCCEEE------EcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence            3222 234555      8999999999999999988766544433

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.77  E-value=6.9e-18  Score=131.75  Aligned_cols=162  Identities=20%  Similarity=0.083  Sum_probs=89.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|++++.......  +...++...... .......+.+|||||.....           ....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~-----------~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIV-VDGEEASLMVYDIWEQDGGR-----------WLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEE-ETTEEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEEEE-ECCEEEEEEEEECCCCccch-----------hhhh
Confidence            378999999999999999999987653222  222222221111 11223467899999965421           1222


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+........++         ...+....+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~  137 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVFD  137 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHHTT
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHHhC
Confidence            34567799999999984433222 234444433211 1123999999999986541111111         223444556


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++.      +|++++.+++++++++.+.+..
T Consensus       138 ~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          138 CKFIE------TSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             CEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence            66666      8899999999999999876643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.77  E-value=3.1e-18  Score=137.39  Aligned_cols=162  Identities=19%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|++...........+.+......... .....+.+|||||.......       .    .
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-------~----~   92 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAI-------T----S   92 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTT-------H----H
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhh-------h----H
Confidence            4799999999999999999999876532222222222211111111 12357899999998764321       1    1


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+.........+         ...+....+
T Consensus        93 ~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~  161 (193)
T 2oil_A           93 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT--IVVMLVGNKSDLSQAREVPTEE---------ARMFAENNG  161 (193)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHHTT
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECCCcccccccCHHH---------HHHHHHHcC
Confidence            12456799999999984333222 33444444432222  3999999999976431011111         334444556


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..++.      +|++++.++++++++|...+.
T Consensus       162 ~~~~~------~Sa~~~~gi~~l~~~l~~~i~  187 (193)
T 2oil_A          162 LLFLE------TSALDSTNVELAFETVLKEIF  187 (193)
T ss_dssp             CEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            66665      788889999999999877654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.77  E-value=4.8e-18  Score=153.83  Aligned_cols=163  Identities=14%  Similarity=0.120  Sum_probs=89.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +.+|+|+|++|+|||||+|+|++.....  .+..+ .|....... ...++..+.+|||||+.++..   .+........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~-i~~~g~~l~liDT~G~~~~~~---~ve~~gi~~~  306 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEEC-FIHDKTMFRLTDTAGLREAGE---EIEHEGIRRS  306 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC--------------------CEE-EEETTEEEEEEC----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEE-EEECCeEEEEEECCCCCcchh---HHHHHHHHHH
Confidence            4689999999999999999999876421  22223 333333333 336888999999999876422   1111112223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++.+.... ....++... . +  .|+++|+||+|+...  .....  .        .+....
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~--~piIvV~NK~Dl~~~--~~~~~--~--------~l~~~~  370 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P-A--AKFLTVANKLDRAAN--ADALI--R--------AIADGT  370 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-T--SEEEEEEECTTSCTT--THHHH--H--------HHHHHH
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-C--CCEEEEEECcCCCCc--cchhH--H--------HHHhcC
Confidence            4457889999999999977666322 122233332 2 2  399999999998755  22211  1        111111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...++.      +|++++.|+++|++++...+.
T Consensus       371 ~~~~i~------vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          371 GTEVIG------ISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TSCEEE------CBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCceEE------EEECCCCCHHHHHHHHHHHHh
Confidence            133444      899999999999999998886

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=2.7e-18  Score=134.67  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=98.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++...........+.+..    .....++  ..+.+|||||..+..    .   ....+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~~   71 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQFP----A---MQRLS   71 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSCH----H---HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhhH----H---HHHHh
Confidence            478999999999999999999987643222222222221    1111233  468999999976631    1   11222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      +    ..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+...  ..+...       ....+...
T Consensus        72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~  138 (172)
T 2erx_A           72 I----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART  138 (172)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             c----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence            2    34599999999984333222 3455555554321122399999999997643  111110       02233344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|++++.+++++++++.+.+.
T Consensus       139 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          139 WKCAFME------TSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             HTCEEEE------CBTTTTBSHHHHHHHHHHTCC
T ss_pred             hCCeEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence            4556665      788899999999999987653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.76  E-value=3.4e-17  Score=130.48  Aligned_cols=161  Identities=19%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++.......    ..|+..........++.  .+.+|||||.......       ...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~   71 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ   71 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC----CTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence            3579999999999999999999977642221    22222222222224554  4678999997654321       112


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+...  ....+.        ...+..
T Consensus        72 ~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~  136 (189)
T 4dsu_A           72 Y----MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLAR  136 (189)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHHH
T ss_pred             H----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHHH
Confidence            2    234599999999984433222 334444444322 122399999999998644  111111        334445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +|++++.+++++++++...+..
T Consensus       137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            55666666      7888899999999999876643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.76  E-value=4.3e-18  Score=138.59  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=101.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      .....+|+|+|++|+|||||+|+|++........  ...+.......+. .++  ..+.+|||||.......        
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~--------   85 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRTI--------   85 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--CCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTCC--------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHHH--------
Confidence            3456899999999999999999999776522221  1222222222222 455  47899999996543221        


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                         ...++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.... ...+ .        ...+
T Consensus        86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~-~~~~-~--------~~~~  150 (213)
T 3cph_A           86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMETRV-VTAD-Q--------GEAL  150 (213)
T ss_dssp             ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS--EEEEEEECTTCSSCC-SCHH-H--------HHHH
T ss_pred             ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCcccc-cCHH-H--------HHHH
Confidence               1122457799999999984333222 345555555443333  999999999974320 1111 1        2334


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+.+++.      +|++++.++++++.+|...+..
T Consensus       151 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          151 AKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            4445556665      7888899999999998876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.76  E-value=1.7e-17  Score=129.48  Aligned_cols=161  Identities=20%  Similarity=0.163  Sum_probs=97.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+|+|++|+|||||+|++++.......    ..|...........++  ..+.+|||||....    ..   ....
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~   71 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----AA---IRDN   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---C----HH---HHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchh----HH---HHHH
Confidence            3489999999999999999999987642211    1122111111122344  37899999996542    11   1112


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++         ...+..
T Consensus        72 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (168)
T 1u8z_A           72 Y----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAD  137 (168)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             H----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHHH
Confidence            2    335599999999984333222 3444555544331 123999999999976431111111         233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+.+++.      .|++++.+++++++++.+.+.
T Consensus       138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence            45666665      788889999999999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.76  E-value=2.9e-17  Score=129.90  Aligned_cols=163  Identities=17%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      .....+|+|+|++|+|||||+|++++......    ...|+..........++  ..+.+|||||........       
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------   74 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR-------   74 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH-------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH-------
Confidence            34568999999999999999999998754221    12222222222222454  367899999976643211       


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-CccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      ..++    ..+|++++|+|++++.+... ..++..+.... ...  .|+++|+||+|+...  ..+..       .....
T Consensus        75 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~  139 (181)
T 2fn4_A           75 EQYM----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQ--RQVPR-------SEASA  139 (181)
T ss_dssp             HHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGG--CCSCH-------HHHHH
T ss_pred             HHHH----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccc--cccCH-------HHHHH
Confidence            1222    34599999999984322222 23333442222 222  399999999997643  11110       01233


Q ss_pred             HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +....+..++.      +|++++.+++++++++...+..
T Consensus       140 ~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          140 FGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             HHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence            44445666666      7888899999999999877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.76  E-value=1.6e-17  Score=132.87  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=101.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-----------CeeEEEEeCCCCCCCCCCc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------GQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtPG~~~~~~~~   86 (301)
                      ...+|+|+|++|+|||||+|+|++...........+.... ...... .+           ...+.+|||||...     
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----   82 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER-----   82 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence            3589999999999999999999976642222111111111 011122 23           24789999999644     


Q ss_pred             HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (301)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~  165 (301)
                            +......++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........+       
T Consensus        83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-------  148 (195)
T 3bc1_A           83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE-------  148 (195)
T ss_dssp             ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-------
T ss_pred             ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-------
Confidence                  22223345678899999999984433333 344455544332 012399999999997643101111       


Q ss_pred             CchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                        ....+....+.+++.      +|++++.++++++++|...+.
T Consensus       149 --~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          149 --EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             --HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence              133444555666666      788889999999999877654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.76  E-value=1.1e-17  Score=131.95  Aligned_cols=163  Identities=18%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.........  ..+.......+. .++  ..+.+|||||...           +..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~   71 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FRS   71 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hhh
Confidence            457999999999999999999997664222111  111222122222 344  3789999999543           223


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ....++..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|..... ...++         ...+
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~~  141 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQAW  141 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHHH
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHHH
Confidence            33455678899999999984433222 3344555444321  0223999999999986320 11111         2233


Q ss_pred             HH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .. ..+..++.      +|++++.+++++++++.+.+..
T Consensus       142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          142 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            33 33445555      7888999999999999876643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.76  E-value=9.6e-18  Score=133.61  Aligned_cols=164  Identities=13%  Similarity=0.067  Sum_probs=101.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+..+|+|+|++|+|||||+|++++... ...    .+|.......+. .++..+.+|||||...           +...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~-----------~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDV-DTI----SPTLGFNIKTLE-HRGFKLNIWDVGGQKS-----------LRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCC-SSC----CCCSSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCC-Ccc----cccCccceEEEE-ECCEEEEEEECCCCHh-----------HHHH
Confidence            4568999999999999999999998762 211    122222233333 5788999999999532           2233


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ..  +. ....
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~~-~~~~  151 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-LE--LD-SIRS  151 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCS
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-hC--hh-hccC
Confidence            3455788999999999985443333 233333322111 112399999999998755  333322221 00  00 0001


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+.+++.      +|++++.+++++++++.+.+.+
T Consensus       152 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          152 HHWRIQG------CSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             SCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CceEEEE------eeCCCCCCHHHHHHHHHHHHHh
Confidence            1223333      7888999999999999888765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.76  E-value=9.7e-18  Score=135.51  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=100.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||+|++++........  ...+.......+. .++  ..+.+|||||....           ...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~   94 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQG--STIGVDFTMKTLE-IQGKRVKLQIWDTAGQERF-----------RTI   94 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGGG-----------HHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCC--CCcceEEEEEEEE-ECCEEEEEEEEECCCcHhH-----------HHH
Confidence            4799999999999999999999766421111  1111112122222 344  47899999996542           112


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+-.. ..++..+......+.  |+++|+||+|+........++         ...+...
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~~~v~~~~---------~~~~~~~  163 (201)
T 2hup_A           95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI--VQLLIGNKSDLSELREVSLAE---------AQSLAEH  163 (201)
T ss_dssp             HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCccccccccCHHH---------HHHHHHH
Confidence            2233567799999999984332222 345555555432333  999999999986431011111         3345555


Q ss_pred             cCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+. .++.      +|++++.++++++++|...+...
T Consensus       164 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          164 YDILCAIE------TSAKDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence            565 5665      78889999999999998776554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.76  E-value=1.4e-17  Score=129.84  Aligned_cols=160  Identities=18%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++........    .|...........++.  .+.+|||||....    ...   ...+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~---~~~~   71 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----ASM---RDLY   71 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCC----HHH---HHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCcceeEEEEEEECCEEEEEEEEECCCchhh----HHH---HHHH
Confidence            3789999999999999999999766422211    1211111111223443  4899999996653    111   1122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                          +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+.........+         ...+...
T Consensus        72 ----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T 1kao_A           72 ----IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSE---------GRALAEE  137 (167)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ----hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence                334599999999984333222 3344444443221 123999999999975431111111         2334444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+.+++.      +|++++.+++++++++.+.+.
T Consensus       138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          138 WGCPFME------TSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HTSCEEE------ECTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence            5666666      788899999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.76  E-value=2.6e-17  Score=133.19  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      .+..+|+|+|++|+|||||+|++++.......    ..|+..........++.  .+.+|||||.....    .   ...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~   80 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRD   80 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhhH----H---HHH
Confidence            35689999999999999999999977642211    12222211112224443  78999999976531    1   111


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .+    +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++         ...+.
T Consensus        81 ~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  146 (206)
T 2bov_A           81 NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA  146 (206)
T ss_dssp             HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             HH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHHH
Confidence            22    334599999999984332222 334444544432 1123999999999986431111211         33344


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+..++.      +|++++.++++++.+|...+.
T Consensus       147 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          147 EQWNVNYVE------TSAKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             HHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            455666666      788889999999999877654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=3.8e-18  Score=136.66  Aligned_cols=163  Identities=15%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||||+|++++...........+.+....... .......+.+|||||...           +.....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~~   90 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY-RHEKRVKLQIWDTAGQER-----------YRTITT   90 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEE-ETTTTEEEEEECHHHHHH-----------CHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHHHHH
Confidence            47999999999999999999997664222211112222222211 112456799999999322           222233


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .++..+|++++|+|++++-+... ..++..+........  |+++|+||+|+........++         ...+....+
T Consensus        91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~  159 (191)
T 3dz8_A           91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA--QVILVGNKCDMEEERVVPTEK---------GQLLAEQLG  159 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHHT
T ss_pred             HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHHHcC
Confidence            34567899999999984332222 345555555432333  999999999975431111111         233445556


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..++.      +|++++.+++++++++.+.+..
T Consensus       160 ~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          160 FDFFE------ASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             CEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence            66666      7888999999999999877654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.76  E-value=2.6e-17  Score=134.33  Aligned_cols=168  Identities=18%  Similarity=0.116  Sum_probs=94.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++.......    ..|...........++.  .+.+|||||....           ..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY----TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY-----------DR   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCchhh-----------hH
Confidence            4579999999999999999999986642211    11221111111223443  6899999995542           12


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-Cch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~  168 (301)
                      ....++..+|++++|+|++++.+....  .++..+..... .  .|+++|+||+|+...  ....+.+..    .. ...
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  172 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR  172 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence            222346688999999999844333332  34555554432 2  399999999998755  333222210    00 011


Q ss_pred             HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ...+....+. .++.      +|++++.+++++++++...+...
T Consensus       173 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          173 GQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             HHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence            3445555565 5665      88889999999999998776543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=140.60  Aligned_cols=166  Identities=16%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++...........+.+....  ... .++  ..+.+|||||.....       .....
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~~l~i~Dt~G~~~~~-------~~~~~   96 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK--TLI-VDGERTVLQLWDTAGQERFR-------SIAKS   96 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE--EEE-ETTEEEEEEEEECTTCTTCH-------HHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE--EEE-ECCEEEEEEEEECCCCcchh-------hhHHH
Confidence            458999999999999999999997764222111112222111  122 333  468999999966531       11222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC-chHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-KPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~-~~l~~~~  173 (301)
                      +    +..+|++++|+|++++.+... ..++..+........  |+++|+||+|+...  ...+ ... ... .....+.
T Consensus        97 ~----~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~--~~~~-~~~-~v~~~~~~~~~  166 (199)
T 2p5s_A           97 Y----FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETV--PIMLVGNKADIRDT--AATE-GQK-CVPGHFGEKLA  166 (199)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---C--CEEEEEECGGGHHH--HHHT-TCC-CCCHHHHHHHH
T ss_pred             H----HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccc--cccc-ccc-ccCHHHHHHHH
Confidence            2    334599999999984433333 344555555432233  99999999997522  0000 000 011 1123344


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+..++.      +|++++.++++++.++.+.+.
T Consensus       167 ~~~~~~~~~------~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          167 MTYGALFCE------TSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence            455666666      788899999999999877653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=8.7e-18  Score=135.83  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||+|++++.......  ....+.......+. .++  ..+.+|||||...           +...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~~~   91 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQER-----------FRSI   91 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHHH
Confidence            479999999999999999999976642211  11122222222222 444  3689999999543           2233


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+...
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~~~v~~~~---------~~~~~~~  160 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLVGNKIDLAERREVSQQR---------AEEFSEA  160 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence            4456788999999999984332222 345555555433233  899999999976431011111         2233444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|++++.++++++.++...+.
T Consensus       161 ~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          161 QDMYYLE------TSAKESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             HTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            4556665      788899999999999876654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.76  E-value=4e-18  Score=136.42  Aligned_cols=161  Identities=14%  Similarity=0.052  Sum_probs=99.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|.+|+|||||+|++++...+....   ..|.......+. .++..+.+|||||.....           ..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~~   83 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFK-SSSLSFTVFDMSGQGRYR-----------NL   83 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEE-CSSCEEEEEEECCSTTTG-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEE-ECCEEEEEEECCCCHHHH-----------HH
Confidence            346899999999999999999999877332221   223333333333 567899999999966532           11


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH-
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-  173 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-  173 (301)
                      ...++..+|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+...  ...++..         ..+ 
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~  152 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVS---------QLLC  152 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHH---------HHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHH---------HHhC
Confidence            2334567799999999984322222 2333333332110 012399999999998754  3332221         111 


Q ss_pred             -HHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 -QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 -~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                       ...   +..++.      +|++++.++++++++|.+.+.
T Consensus       153 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          153 LENIKDKPWHICA------SDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             GGGCCSSCEEEEE------CBTTTTBTHHHHHHHHHHHC-
T ss_pred             hhhccCCceEEEE------ccCCCCcCHHHHHHHHHHHHH
Confidence             111   223343      788899999999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.76  E-value=5.2e-18  Score=135.61  Aligned_cols=162  Identities=14%  Similarity=0.099  Sum_probs=97.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ....+|+|+|.+|+|||||+|++++...........+.  ......+. .++  ..+.+|||||...           +.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~   83 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVD-IDGERIKIQLWDTAGQER-----------FR   83 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEE-ETTEEEEEEEEECCCSHH-----------HH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEE-ECCEEEEEEEEECCCchh-----------hh
Confidence            35589999999999999999999976653222212222  22222222 344  4789999999432           11


Q ss_pred             -HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           95 -KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        95 -~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                       .....++..+|++++|+|++++.+... ..++..+...+. ....|+++|+||+|+........++         ...+
T Consensus        84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~  153 (189)
T 1z06_A           84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDL---------AQKF  153 (189)
T ss_dssp             TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred             hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHH---------HHHH
Confidence             112223567799999999984332222 334455554431 1123999999999976431011111         2334


Q ss_pred             HHHcCCceEEecCCCcccccch---hHHHHHHHHHHHHH
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI  208 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~~l~~~~  208 (301)
                      ....+..++.      +|++++   .++.+++.+|.+.+
T Consensus       154 ~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          154 ADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             HHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC---
T ss_pred             HHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHH
Confidence            4455666665      788888   88999999886654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.76  E-value=3.8e-17  Score=128.54  Aligned_cols=164  Identities=21%  Similarity=0.170  Sum_probs=94.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++........ ..+.+.....  +. .++.  .+.+|||||.....         ...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~D~~g~~~~~---------~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERT--LT-VDGEDTTLVVVDTWEAEKLD---------KSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEE--EE-ETTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEE--EE-ECCEEEEEEEEecCCCCccc---------hhh
Confidence            45899999999999999999999877532222 2223322221  22 3443  67899999965521         111


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++         ...+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~  139 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV  139 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence            11234567899999999984433222 234444443211 1123999999999986541111111         223334


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.+++++++++...+..
T Consensus       140 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          140 VFDCKFIE------TSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHTSEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence            44556665      8888999999999999776543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.75  E-value=4.6e-17  Score=131.33  Aligned_cols=159  Identities=16%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------------------   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------------------   68 (301)
                      ...+|+|+|++|+|||||+|+|++...........+.  ......+. .++                             
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA--SFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC--EEEEEEEE-TTC-----------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc--eeEEEEEE-ecCccccccccccccccccccccccccccccc
Confidence            4589999999999999999999987653221111111  11111111 222                             


Q ss_pred             ----------eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcccc
Q 022188           69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF  137 (301)
Q Consensus        69 ----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~  137 (301)
                                ..+.+|||||......       ...    ..+..+|++++|+|++++.+... ..++..+....+    
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~----~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----  147 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYAS-------IVP----LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----  147 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTT-------THH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred             cccccCccceeEEEEEECCCcHHHHH-------HHH----HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence                      6789999999655322       111    22456799999999985433333 344555555433    


Q ss_pred             CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .|+++|+||+| ........++         +..+....+.+++.      +|++++.++.++++++...+..
T Consensus       148 ~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          148 YIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence            39999999999 3221122221         34455556666666      7888899999999999876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.75  E-value=9.4e-18  Score=132.86  Aligned_cols=165  Identities=18%  Similarity=0.122  Sum_probs=94.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ....+|+|+|++|+|||||+|++++..........  .+.......+. .+   ...+.+|||||...           +
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~   71 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVT-VDGDKVATMQVWDTAGQER-----------F   71 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEEC-CSSSCCEEEEEECCC----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEE-EcCCcEEEEEEEECCCChH-----------h
Confidence            34589999999999999999999987643222111  11112222222 22   34789999999443           2


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                      .......+..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+.........+.        ..
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~  143 (182)
T 1ky3_A           72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQ  143 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HH
T ss_pred             hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HH
Confidence            2233445688899999999984433222 3344444443320  12239999999999753310000111        22


Q ss_pred             HHHH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          171 EILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+.. ..+..++.      +|++++.+++++++++...+.
T Consensus       144 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          144 ELAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             HHHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence            3333 22345555      788889999999999977654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.75  E-value=8.3e-18  Score=151.75  Aligned_cols=164  Identities=20%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|.+|+|||||+|+|+|....... ...+.|...... ...+++..+.+|||||+.....  ..+...+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~-~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQD-TVEWYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEE-EEEETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeE-EEEECCeEEEEEECCCcccccc--chHHHHHHHHHHH
Confidence            47999999999999999999988742111 122334333333 3347889999999999875311  1111223333334


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (301)
                      ++..+|++++|+|+..+++..+.....++... +.    |+++++||+|....    .....       ..++. ..+. 
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~~----p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~  140 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE----FEREV-------KPELY-SLGFG  140 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence            56778999999999888888887776766653 32    89999999996421    11111       01222 2332 


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++      +||.++.|+.+|++.+...++.
T Consensus       141 ~~~~------iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          141 EPIP------VSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             SCEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CEEE------EeccCCCCHHHHHHHHHHhccc
Confidence            3444      8999999999999999888764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=135.23  Aligned_cols=163  Identities=20%  Similarity=0.186  Sum_probs=101.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe--eCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ....+|+|+|.+|+|||||+|+|++.......    ..|..........  .....+.+|||||.......         
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------   88 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL---------   88 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC---------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHHH---------
Confidence            35689999999999999999999987653221    1222222121121  23467899999997664321         


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                        ...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+.........+         ...+.
T Consensus        89 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~  156 (201)
T 3oes_A           89 --PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVE---------GKKLA  156 (201)
T ss_dssp             --CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             --HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHH---------HHHHH
Confidence              2234677899999999984332222 2333333332211 123999999999976441111111         23444


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +|++++.++++++++|...+..
T Consensus       157 ~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          157 ESWGATFME------SSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             HHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            555666666      8889999999999999887755

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.75  E-value=1.1e-17  Score=132.93  Aligned_cols=161  Identities=15%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.......  ....+.......+. .++  ..+.+|||||....           ..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~   72 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQERF-----------RT   72 (183)
T ss_dssp             EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEE-ECCEEEEEEEEcCCCChhh-----------hh
Confidence            3489999999999999999999976542111  01112222222222 455  57899999995442           22


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+..
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~  141 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV--EKMILGNKCDVNDKRQVSKER---------GEKLAL  141 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEEC--CCSCCCSCHHH---------HHHHHH
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECccCCccCcCCHHH---------HHHHHH
Confidence            23345678899999999985433222 334555554433233  999999999986431111111         234445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+.+++.      +|++++.++++++.++...+.
T Consensus       142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          142 DYGIKFME------TSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            55666665      788889999999999877654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.75  E-value=2.1e-18  Score=155.61  Aligned_cols=162  Identities=19%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +.+|+|+|++|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+.++...   +.........
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~~~~---ve~~gi~~~~  298 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLV-VGGIPVQVLDTAGIRETSDQ---VEKIGVERSR  298 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEE-ETTEEEEECC-----------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEE-ECCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence            4689999999999999999999865421111 12233332222223 67889999999998764221   1111122233


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      ..+..+|++++|+|++++++..+..++..+..       .|+++|+||+|+...  .... .+..     +.     ...
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~  358 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT  358 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred             hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence            45678999999999998888777666655532       299999999998755  2111 1111     00     123


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .++.      +|++++.|+++|++.|.+.+...
T Consensus       359 ~~i~------iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          359 QIVH------TAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             CEEE------EBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             cEEE------EECCCCCCHHHHHHHHHHHHhcc
Confidence            3444      78999999999999999887653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.75  E-value=3.5e-17  Score=130.09  Aligned_cols=162  Identities=20%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+|+|++|+|||||+|+|++.......    ..|+..........++  ..+.+|||||....    ..   ....
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~---~~~~   85 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----AA---IRDN   85 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----HH---HHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCccc----HH---HHHH
Confidence            4589999999999999999999977642211    1222222221122444  36899999997653    11   1122


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++         ...+..
T Consensus        86 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  151 (187)
T 2a9k_A           86 Y----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAE  151 (187)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             H----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHHH
Confidence            2    234599999999984332222 3444555544331 123999999999976431111111         334455


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +|++++.++++++++|.+.+..
T Consensus       152 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          152 QWNVNYVE------TSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             HTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence            55666665      7888899999999999876543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.75  E-value=3.2e-17  Score=128.15  Aligned_cols=161  Identities=16%  Similarity=0.240  Sum_probs=98.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|+|.......  ..+.|.......+. .++..+.+|||||.........  .+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEE-ECCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence            378999999999999999999987643221  11223222222222 5678899999999887543221  111211111


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      . ..++|++++|+|+++ + .....++..+.+. +    .|+++|+||+|+...  ..+        ......+....+.
T Consensus        78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~--~~~--------~~~~~~~~~~~~~  139 (165)
T 2wji_A           78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-G----ANLLLALNKMDLAKS--LGI--------EIDVDKLEKILGV  139 (165)
T ss_dssp             H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-T----CCEEEEEECHHHHHH--TTC--------CCCHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-C----CCEEEEEEchHhccc--cCh--------hhHHHHHHHHhCC
Confidence            0 125799999999983 2 1222344444331 2    299999999996432  110        0113444455566


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +++.      +||+++.+++++++++.+.+
T Consensus       140 ~~~~------~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          140 KVVP------LSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CEEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred             CEEE------EEcCCCCCHHHHHHHHHHHh
Confidence            6665      89999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.75  E-value=6.4e-18  Score=132.06  Aligned_cols=159  Identities=18%  Similarity=0.105  Sum_probs=98.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++...........+  ......... .++  ..+.+|||||........         
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~---------   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAIT---------   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--SSEEEEEEE-ETTEEEEEEEECCTTGGGTTCCC---------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--EEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHHH---------
Confidence            357999999999999999999998764222111111  122222222 333  478999999965432211         


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                        ..++..+|++++|+|++++.+... ..++..+..... .  .|+++|+||+|+........++         ...+..
T Consensus        72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (168)
T 1z2a_A           72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAK  137 (168)
T ss_dssp             --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred             --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence              112456799999999984332222 334444544432 2  2999999999976431011111         334445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+++.      .|++++.+++++++++.+.+
T Consensus       138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             HHTCEEEE------CBTTTTBSSHHHHHHHHHHH
T ss_pred             HcCCeEEE------EecCCCCCHHHHHHHHHHHH
Confidence            55666666      78888999999999987665

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.75  E-value=2.4e-18  Score=135.92  Aligned_cols=160  Identities=17%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++.......  ....+......... .++  ..+.+|||||......       .... 
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~-------~~~~-   82 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFRS-------LIPS-   82 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGGG-------GSHH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHHH-------HHHH-
Confidence            479999999999999999999976642222  12222222222222 344  4789999999654211       1112 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         ++..+|++++|+|++++.+... ..++..+....+...  |+++|+||+|+.........+         ...+...
T Consensus        83 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  148 (179)
T 2y8e_A           83 ---YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSTEE---------GERKAKE  148 (179)
T ss_dssp             ---HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ---HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccccCcCCHHH---------HHHHHHH
Confidence               2345699999999984332222 344455554433333  999999999976431111111         2233444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|++++.+++++++++...+.
T Consensus       149 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          149 LNVMFIE------TSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred             cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence            4566665      788889999999999877553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.75  E-value=2.1e-16  Score=133.28  Aligned_cols=161  Identities=17%  Similarity=0.176  Sum_probs=102.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|++|+|||||+|+|+|...+...  .++.|.......+. . +..+.+|||||.........  .+.+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            478999999999999999999998653322  22444433332222 2 67899999999987643221  122222111


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                       ....+|++++|+|+++ . .....+...+.+ .+.    |+++++||+|....  ..        .......+....+.
T Consensus        77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~~----p~ilv~NK~Dl~~~--~~--------~~~~~~~l~~~lg~  138 (272)
T 3b1v_A           77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE-TGI----PVTIALNMIDVLDG--QG--------KKINVDKLSYHLGV  138 (272)
T ss_dssp             -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TCS----CEEEEEECHHHHHH--TT--------CCCCHHHHHHHHTS
T ss_pred             -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cCC----CEEEEEEChhhCCc--CC--------cHHHHHHHHHHcCC
Confidence             1246899999999983 2 112233333333 232    99999999996532  11        11113445555566


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ++++      +||+++.|+++|++.+...+.
T Consensus       139 ~vi~------~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          139 PVVA------TSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             CEEE------CBTTTTBSHHHHHHHHHHSCT
T ss_pred             CEEE------EEccCCCCHHHHHHHHHHHHh
Confidence            6666      889999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.75  E-value=3e-17  Score=132.40  Aligned_cols=170  Identities=18%  Similarity=0.103  Sum_probs=100.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      ......+|+|+|++|+|||||+|++++... ...   ...|+..........++.  .+.+|||||.......       
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------   84 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE---YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------   84 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------
Confidence            344568999999999999999999998763 222   122222222222224554  5679999998664321       


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-  165 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-  165 (301)
                          ...++..+|++++|+|++++.+....  .++..+....+ .  .|+++|+||+|+...  ......+..    .. 
T Consensus        85 ----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~  155 (201)
T 2q3h_A           85 ----RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--VKVLIELDKCKEKPVP  155 (201)
T ss_dssp             ----GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--HHHHHHHHTTTCCCCC
T ss_pred             ----hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--hhhhhhhcccccccCC
Confidence                22346788999999999854333332  35555555433 2  399999999998643  111111100    00 


Q ss_pred             CchHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          166 PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       166 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ......+....+. .++.      +|++++.+++++++++...+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          156 EEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             HHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence            0112334444454 5555      7888999999999998776543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.74  E-value=6e-17  Score=129.42  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||+|+|++.......    ..|+..........++.  .+.+|||||....           ...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~   85 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAM   85 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHHH-----------HHH
Confidence            479999999999999999999977642211    11222222222224443  5889999995442           122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++++|+|++++.+..+ ..++..+...... ...|+++|+||+|+.... ...++         ...+...
T Consensus        86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~  154 (190)
T 3con_A           86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRT-VDTKQ---------AHELAKS  154 (190)
T ss_dssp             ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHHH---------HHHHHHH
T ss_pred             HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCccc-CCHHH---------HHHHHHH
Confidence            2334678899999999984433233 3344445444321 123999999999976430 11111         3344455


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+..++.      +|++++.+++++++++.+.+...
T Consensus       155 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          155 YGIPFIE------TSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             HTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence            5656665      78888999999999998776553

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.2e-17  Score=133.18  Aligned_cols=162  Identities=15%  Similarity=0.063  Sum_probs=97.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|.+|+|||||+|++++.......+ ..+.+    ...+. .++..+.+|||||......           ..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~~   77 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN----VEEIV-INNTRFLMWDIGGQESLRS-----------SW   77 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSS----CEEEE-ETTEEEEEEECCC----CG-----------GG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CCccc----eEEEE-ECCEEEEEEECCCCHhHHH-----------HH
Confidence            45899999999999999999999766532221 11111    22223 5678999999999755321           11


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQL  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~~  175 (301)
                      ..++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+...  ...++....     +... +..
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~~~~~~  149 (187)
T 1zj6_A           78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKLTSIKD  149 (187)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCCS
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hChhhhcC
Confidence            123467799999999985544333 233333332210 112399999999998654  222221111     0000 011


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +|++++.+++++++++.+.+..
T Consensus       150 ~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          150 HQWHIQA------CCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             SCEEEEE------CBTTTTBTHHHHHHHHHHHHCC
T ss_pred             CCcEEEE------ccCCCCcCHHHHHHHHHHHHHH
Confidence            1223343      7889999999999999887754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.74  E-value=1.3e-17  Score=136.04  Aligned_cols=158  Identities=18%  Similarity=0.168  Sum_probs=102.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ..+|+|+|.+|+|||||+++++.......-    .+|....  ..... .++  ..+.||||+|...+..          
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~----~~Tig~d~~~k~~~-~~~~~v~l~iwDtaGqe~~~~----------   77 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY----QATIGIDFLSKTMY-LEDRTIRLQLWDTAGLERFRS----------   77 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEE-CSSCEEEEEEECCSCTTTCGG----------
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCc----CCccceEEEEEEEE-ecceEEEEEEEECCCchhhhh----------
Confidence            479999999999999999999865542221    1222211  11112 333  3678999999665321          


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                       ....++++++++++|+|.+++-+-.. ..++..+....+.++  |++||.||+|+........++         ...+.
T Consensus        78 -l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a  145 (216)
T 4dkx_A           78 -LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKA  145 (216)
T ss_dssp             -GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             -HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHH
Confidence             12234678899999999985444433 456666766666555  999999999976431112221         23445


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+..++.      +||+++.++++++..|.+.+.
T Consensus       146 ~~~~~~~~e------~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          146 KELNVMFIE------TSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             HHHTCEEEE------EBTTTTBSHHHHHHHHHHHC-
T ss_pred             HHhCCeeEE------EeCCCCcCHHHHHHHHHHHHH
Confidence            555666665      899999999999999877654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=2.3e-17  Score=132.69  Aligned_cols=162  Identities=19%  Similarity=0.155  Sum_probs=100.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|+|++...........+.+.    ......++  ..+.+|||||.....    .   ....
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~   75 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY----RQVISCDKSVCTLQITDTTGSHQFP----A---MQRL   75 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE----EEEEEETTEEEEEEEEECCGGGSCH----H---HHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce----eEEEEECCEEEEEEEEeCCChHHhH----H---HHHH
Confidence            458999999999999999999997664222211112111    11111333  368999999966531    1   1112


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      +    +..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+.... ....+         ...+..
T Consensus        76 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~  141 (199)
T 2gf0_A           76 S----ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ  141 (199)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred             h----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence            2    334599999999984333222 33455555543321223999999999986431 11111         223344


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.+++++++++...+..
T Consensus       142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          142 EWKCAFME------TSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             HHTCEEEE------CBTTTTBSHHHHHHHHHHHCSS
T ss_pred             HhCCeEEE------EecCCCCCHHHHHHHHHHHHhh
Confidence            45556665      7888999999999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.74  E-value=1.2e-17  Score=130.06  Aligned_cols=160  Identities=11%  Similarity=0.013  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|++|+|||||+|++++......     .+|.......+. ..+..+.+|||||....           ......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDKI-----------RPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEE-CSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEE-ECCEEEEEEEcCCChhh-----------HHHHHH
Confidence            3799999999999999999987654221     112222222223 56788999999997541           122233


Q ss_pred             cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      ++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ...   ......+.
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~~---~~~~~~~~  136 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-LGL---HSLRHRNW  136 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCSSCCE
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHH-hCc---ccccCccE
Confidence            4678899999999985433222 223332222110 012399999999998654  233222221 000   00000111


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +++      .+|++++.+++++++++...+.
T Consensus       137 ~~~------~~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          137 YIQ------ATCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             EEE------ECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEE------EcccCCCcCHHHHHHHHHHHHh
Confidence            233      3788899999999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.5e-17  Score=134.27  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=95.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++........  ...+.......+. .++  ..+.+|||||....           ..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-----------~~   89 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQERF-----------RS   89 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHHHH-----------SC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcHhH-----------HH
Confidence            35799999999999999999999876522221  1112122222222 344  57899999994321           11


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++.+... ..++..+........  |+++|+||+|+.........+         ...+..
T Consensus        90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~  158 (200)
T 2o52_A           90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI--VVILCGNKKDLDPEREVTFLE---------ASRFAQ  158 (200)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCcccccccCHHH---------HHHHHH
Confidence            11223567799999999984333222 334444544333233  999999999975431111111         233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+..++.      +|++++.++++++.++.+.+.
T Consensus       159 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          159 ENELMFLE------TSALTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            55656665      788889999999999877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.74  E-value=2.5e-17  Score=128.90  Aligned_cols=163  Identities=21%  Similarity=0.133  Sum_probs=93.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++........  ...+......... .++  ..+.+|||||......       .+.. 
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~~-   70 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQD-   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC---------------C-
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhhh-
Confidence            3689999999999999999999765422221  1122222222222 344  4678999999765321       0111 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                        .++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+........++         ...+...
T Consensus        71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~  138 (169)
T 3q85_A           71 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE---------GRHLAGT  138 (169)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             --hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHH---------HHHHHHH
Confidence              11234599999999984322222 2344444443221 123999999999976431111111         2344555


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +|++++.+++++++++.+.+..
T Consensus       139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          139 LSCKHIE------TSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence            5666666      7888999999999999876643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.74  E-value=2.6e-17  Score=132.39  Aligned_cols=170  Identities=21%  Similarity=0.153  Sum_probs=98.8

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHH
Q 022188           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFV   89 (301)
Q Consensus        12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~   89 (301)
                      .+.+.....+|+|+|.+|+|||||+|++++...........+....  ...+. .++.  .+.+|||||.....   .. 
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~i~Dt~g~~~~~---~~-   88 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTY--ERRIM-VDKEEVTLVVYDIWEQGDAG---GW-   88 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEE--EEEEE-ETTEEEEEEEECCCCCSGGG---HH-
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceE--EEEEE-ECCEEEEEEEEecCCCccch---hh-
Confidence            3444456689999999999999999999865432111111111111  11122 4444  56889999975421   11 


Q ss_pred             HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~  168 (301)
                         +..   .++..+|++++|+|++++.+-.. ..++..+...... ...|+++|.||+|+........++         
T Consensus        89 ---~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~---------  152 (195)
T 3cbq_A           89 ---LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE---------  152 (195)
T ss_dssp             ---HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH---------
T ss_pred             ---hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH---------
Confidence               111   12345699999999984333222 3344444443221 123999999999986431112221         


Q ss_pred             HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+....+..++.      +|++.+.+++++++.+...+..
T Consensus       153 ~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          153 GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHH
Confidence            23344445555655      7888999999999999877654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.74  E-value=4.5e-18  Score=139.10  Aligned_cols=165  Identities=18%  Similarity=0.177  Sum_probs=103.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|+|++...........+.+..  ........+  ..+.+|||||.........        
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------   79 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH--PVTFLDDQGNVIKFNVWDTAGQEKKAVLKD--------   79 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE--EEEEEBTTSCEEEEEEEEECSGGGTSCCCH--------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE--EEEEEeCCCcEEEEEEEecCCchhhchHHH--------
Confidence            4589999999999999999999976643222111221111  111221222  5689999999765432211        


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                         ..+..+|++++|+|++++.+... ..++..+....+...  |+++|+||+|+...  ..+..       .....+..
T Consensus        80 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~--~~~~~-------~~~~~~~~  145 (218)
T 4djt_A           80 ---VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR--QKISK-------KLVMEVLK  145 (218)
T ss_dssp             ---HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC------CCH-------HHHHHHTT
T ss_pred             ---HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc--cccCH-------HHHHHHHH
Confidence               12456799999999985544333 345566665554433  99999999997643  11110       01223334


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      ..+..++.      +||+++.++++++.++...+....
T Consensus       146 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          146 GKNYEYFE------ISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             TCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             HcCCcEEE------EecCCCCCHHHHHHHHHHHHhccc
Confidence            44555665      788899999999999998876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.74  E-value=1.3e-17  Score=133.23  Aligned_cols=163  Identities=14%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||+|++++.......    ..|.......+. ..+..+.+|||||...           +....
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~   84 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKIT-KGNVTIKLWDIGGQPR-----------FRSMW   84 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTTH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEE-eCCEEEEEEECCCCHh-----------HHHHH
Confidence            3579999999999999999999976652211    222222233333 5788999999999433           11222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...  ....+.... ...   ......
T Consensus        85 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~---~~~~~~  157 (188)
T 1zd9_A           85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEK-MNL---SAIQDR  157 (188)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCCSS
T ss_pred             HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHH-hCh---hhhccC
Confidence            233467899999999984433332 223333322110 112399999999998754  222222221 000   000011


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..++.      +|++++.+++++++++.+.+.
T Consensus       158 ~~~~~~------~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          158 EICCYS------ISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             CEEEEE------CCTTTCTTHHHHHHHHHHTCC
T ss_pred             CeeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence            122333      788899999999999977654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.74  E-value=1.5e-17  Score=134.77  Aligned_cols=163  Identities=15%  Similarity=0.068  Sum_probs=99.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++.......  ....+.......+. .++  ..+.+|||||......           
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~-----------   72 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQS-----------   72 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGSC-----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH-----------
Confidence            4589999999999999999999987653221  12222222222222 333  4789999999654321           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ....++..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+.... ...++         ...+
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~  142 (207)
T 1vg8_A           73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQAW  142 (207)
T ss_dssp             SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHHH
T ss_pred             hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HHHH
Confidence            11234577899999999984433222 2344444443321  0123999999999986330 11111         2223


Q ss_pred             HH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .. ..+..++.      +||+++.++++++++|.+.+..
T Consensus       143 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          143 CYSKNNIPYFE------TSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            33 33445555      7888999999999999776543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.74  E-value=1.2e-16  Score=124.31  Aligned_cols=158  Identities=19%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|++|+|||||+|++++.......    ..|...........++  ..+.+|||||......       ....++
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~   72 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM   72 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCcccc----CCccceEEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHhh
Confidence            68999999999999999999977642221    1122111111122343  3578999999765321       111222


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                          ..+|++++|+|++++.+... ..++..+...... ...|+++++||+|....  ....+.        ...+....
T Consensus        73 ----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~~  137 (166)
T 2ce2_X           73 ----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARSY  137 (166)
T ss_dssp             ----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHHH
T ss_pred             ----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHHc
Confidence                24599999999984433222 3444555544321 12399999999997653  111111        33444555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      .|++++.+++++++++...+.
T Consensus       138 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          138 GIPYIE------TSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             TCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred             CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence            666666      788889999999999987654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.73  E-value=1.9e-16  Score=125.59  Aligned_cols=163  Identities=22%  Similarity=0.161  Sum_probs=100.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ..+..+|+|+|++|+|||||+|++++.......    ..|...........++.  .+.+|||||.......       .
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~   83 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM-------R   83 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-------H
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-------H
Confidence            345689999999999999999999976542221    12222222222334554  4567999996553321       1


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ..+    +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++         ...+
T Consensus        84 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~---------~~~~  149 (183)
T 3kkq_A           84 EQY----MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEM  149 (183)
T ss_dssp             HHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHH
T ss_pred             HHH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHHH---------HHHH
Confidence            122    234599999999984322222 3344444333221 123899999999976531111111         3345


Q ss_pred             HHHcCCceEEecCCCccccc-chhHHHHHHHHHHHHHh
Q 022188          173 LQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~  209 (301)
                      ....+..++.      +|++ ++.+++++++.+.+.+.
T Consensus       150 ~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          150 ATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence            5555666776      7888 88999999999987664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.73  E-value=1.4e-16  Score=124.16  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|++++.......    ..|...........+  ...+.+|||||......       ....+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~   71 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence            378999999999999999999976542211    122222221112233  34689999999766432       11122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      +    ..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++         ...+...
T Consensus        72 ~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T 1c1y_A           72 M----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  137 (167)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence            2    34599999999984322222 3344444443221 123999999999986431111111         2334444


Q ss_pred             c-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      . +..++.      +|++++.+++++++++.+.+
T Consensus       138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          138 WCNCAFLE------SSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence            4 455555      78889999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.73  E-value=1.8e-17  Score=135.48  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeC-----------CeeEEEEeCCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSAG   85 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtPG~~~~~~~   85 (301)
                      ..+|+|+|++|+|||||+|+|++......    ...|....  ...+....           ...+.+|||||..     
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----   95 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-----   95 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence            47999999999999999999998664211    11122111  11122111           3578999999932     


Q ss_pred             cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                            .+......++..+|++++|+|++++.+...  ...++.......  ...|+++|+||+|+........+     
T Consensus        96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~-----  162 (217)
T 2f7s_A           96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER-----  162 (217)
T ss_dssp             ------HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-----
T ss_pred             ------hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-----
Confidence                  222333344577899999999984332222  222333322111  22399999999997643101111     


Q ss_pred             cCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                          ....+....+..++.      +|++++.++++++++|...+.
T Consensus       163 ----~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          163 ----QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             ----HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence                133445555666666      788889999999999877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.73  E-value=4.9e-17  Score=131.33  Aligned_cols=165  Identities=16%  Similarity=0.115  Sum_probs=101.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++...........+..  .. .... .++  ..+.+|||||.....           .
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~   88 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YI-ADIE-VDGKQVELALWDTAGQEDYD-----------R   88 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC--CE-EEEE-ETTEEEEEEEECCCCSGGGT-----------T
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce--EE-EEEE-ECCEEEEEEEEECCCchhHH-----------H
Confidence            35799999999999999999999876522211111111  11 1122 344  378999999965421           1


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCC-ch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~-~~  168 (301)
                      ....++..+|++++|+|++++.+...  ..++..+..... .  .|+++|+||+|+...  ....+.+..    ... ..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  163 (201)
T 2gco_A           89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEE  163 (201)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHH
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHHH
Confidence            22335678899999999984332222  345555555432 2  299999999998754  222222211    000 11


Q ss_pred             HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+....+. .++.      +|++++.+++++++++.+.+
T Consensus       164 ~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          164 GRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence            2344445555 4555      78889999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.73  E-value=2.3e-17  Score=133.67  Aligned_cols=165  Identities=18%  Similarity=0.091  Sum_probs=100.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      .+..+|+|+|.+|+|||||++++++......    ...|+..........++.  .+.+|||||.....           
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------   92 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------   92 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-----------
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCC----cCCeecceeEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence            3568999999999999999999996554211    122222222222224444  45699999975422           


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----C-Cc
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PK  167 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~-~~  167 (301)
                      .....++..+|++++|+|++++.+....  .++..+..... .  .|+++|+||+|+...  ....+.+...    . ..
T Consensus        93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 4gzl_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence            2233456788999999999854443332  35555555432 2  399999999998755  2222221110    0 01


Q ss_pred             hHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       168 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ....+....+. .++.      +||+++.|++++++++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          168 QGLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcEEEE------eeCCCCCCHHHHHHHHHHH
Confidence            12334444454 3555      7889999999999998654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.73  E-value=1.1e-17  Score=133.61  Aligned_cols=163  Identities=11%  Similarity=0.026  Sum_probs=99.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+|+|++|+|||||+|++++.......+     |......... .++..+.+|||||.......           .
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~-----------~   83 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQ-YKNISFEVWDLGGQTGVRPY-----------W   83 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEE-ETTEEEEEEEECCSSSSCCC-----------C
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEE-ECCEEEEEEECCCCHhHHHH-----------H
Confidence            45899999999999999999998766432211     1112222223 56789999999997654321           2


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ..  . ......
T Consensus        84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~-~~~~~~  156 (189)
T 2x77_A           84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQ-LG--V-SSIMNR  156 (189)
T ss_dssp             SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--G-GGCCSS
T ss_pred             HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHH-hC--h-hhccCC
Confidence            234678899999999985544333 222332222110 012399999999998755  333322221 00  0 000011


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      +|++++.+++++++++.+.+..
T Consensus       157 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          157 TWTIVK------SSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             CEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEE------ccCCCccCHHHHHHHHHHHHHh
Confidence            122333      7888999999999999887755

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.2e-17  Score=135.56  Aligned_cols=162  Identities=19%  Similarity=0.119  Sum_probs=99.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|+|++.........  ..+.......+. .++  ..+.+|||||......           
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------   77 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS--TIGVEFATRTLE-IEGKRIKAQIWDTAGQERYRA-----------   77 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTTC-----------
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEE-ECCEEEEEEEEECCCccchhh-----------
Confidence            347999999999999999999998765322211  112222222222 344  4789999999665322           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++|+|+|++++.+... ..++..+........  |+++|+||+|+........++         ...+..
T Consensus        78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~  146 (223)
T 3cpj_B           78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV--AVGLIGNKSDLAHLRAVPTEE---------SKTFAQ  146 (223)
T ss_dssp             CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C--EEEEEECCGGGGGGCCSCHHH---------HHHHHH
T ss_pred             hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence            12334678899999999985433333 334555554433233  999999999976431011111         233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.+++++++++...+..
T Consensus       147 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          147 ENQLLFTE------TSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             HTTCEEEE------CCCC-CCCHHHHHHHHHHHHTT
T ss_pred             HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            55555655      7888899999999999877654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.73  E-value=9e-17  Score=152.18  Aligned_cols=122  Identities=18%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-eeeEe-----EEEEe--------------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEM-----KTTVL--------------------------   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t-~~~~~-----~~~~~--------------------------   65 (301)
                      ...+|+|+|++|+|||||+|+|+|....+.+..+.... +....     .....                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            45899999999999999999999998765543222100 00000     00000                          


Q ss_pred             -------------------eCC----eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHH
Q 022188           66 -------------------KDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE  122 (301)
Q Consensus        66 -------------------~~~----~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~  122 (301)
                                         +..    ..+.||||||+.+...        .......+.+.+|++|+|+|++.+++..+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~  219 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER  219 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence                               000    3689999999775321        111222233567999999999878888776


Q ss_pred             HHHH-HHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          123 TAVH-RLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       123 ~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ..+. .+.. .+    .|+++|+||+|....
T Consensus       220 ~~l~~~l~~-~~----~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          220 RYLENYIKG-RG----LTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHTTT-SC----CCEEEEEECGGGGGG
T ss_pred             HHHHHHHHh-hC----CCEEEEEECcccccc
Confidence            6554 3322 22    289999999997643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.73  E-value=5.4e-17  Score=128.95  Aligned_cols=166  Identities=16%  Similarity=0.076  Sum_probs=102.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||++++++........    .|+..........++.  .+.+|||||.....           ..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~   69 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RL   69 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-----------TT
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcC----CcccceeEEEEEECCEEEEEEEEECCCCHhHH-----------HH
Confidence            4799999999999999999999765422211    1111111111223444  56799999975432           12


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCC-chH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KPL  169 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~-~~l  169 (301)
                      ...++..+|++++|+|++++.+....  .++..+....+ .  .|+++|+||+|+...  ....+.+..    ... ...
T Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~  144 (186)
T 1mh1_A           70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG  144 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred             HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-C--CCEEEEeEccccccc--chhhhhhcccccccCCHHHH
Confidence            23346788999999999854333332  35556655433 2  399999999997654  222221110    000 112


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+....+. +++.      +||+++.+++++++++...+..
T Consensus       145 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          145 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence            334444554 5565      8888999999999999887754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=2.3e-17  Score=132.23  Aligned_cols=161  Identities=16%  Similarity=0.106  Sum_probs=99.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|+|||||+|+|++...........+  .......+. .+  ...+.+|||||.......       .   
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~-------~---   81 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTIS-VDGNKAKLAIWDTAGQERFRTL-------T---   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEE-ETTEEEEEEEEEECSSGGGCCS-------H---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--eEEEEEEEE-ECCeEEEEEEEeCCCchhhhhh-------h---
Confidence            47999999999999999999998764322211112  222122222 23  357899999996653221       1   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ..++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... ...++         ...+...
T Consensus        82 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~  149 (195)
T 1x3s_A           82 -PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRNE---------GLKFARK  149 (195)
T ss_dssp             -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHHH---------HHHHHHH
T ss_pred             -HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHHH---------HHHHHHH
Confidence             122456799999999984432222 234444443321 1223999999999975330 11111         2334445


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +|++++.+++++++++.+.+..
T Consensus       150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             TTCEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCEEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence            5656665      7888899999999999887764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.72  E-value=1.4e-17  Score=132.14  Aligned_cols=159  Identities=15%  Similarity=0.053  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|.+|+|||||+|++++........ ..+.+.    ..+. .++..+.+|||||.....           ...
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~----~~~~-~~~~~~~i~Dt~G~~~~~-----------~~~   82 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV----EEIV-INNTRFLMWDIGGQESLR-----------SSW   82 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSSC----EEEE-ETTEEEEEEEESSSGGGT-----------CGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCceee----EEEE-ECCEEEEEEECCCCHhHH-----------HHH
Confidence            46899999999999999999999877522111 122221    2222 467899999999975422           122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ..  +. .....
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~  155 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-LK--LT-SIKDH  155 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCSS
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-hC--cc-cccCC
Confidence            344678899999999986544443 233333332210 112399999999998654  222222111 00  00 00111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +..++.      +|++++.++++++++|.+
T Consensus       156 ~~~~~~------~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          156 QWHIQA------CCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             CEEEEE------CBTTTTBTHHHHHHHHHT
T ss_pred             ceEEEE------ccCCCCcCHHHHHHHHHh
Confidence            223343      788899999999998854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.72  E-value=6.4e-17  Score=131.83  Aligned_cols=118  Identities=17%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ...+|+|+|++|+|||||++++++.......    ..+. .....+. .+   +..+.+|||||....       ...  
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~----~~~~-~~~~~~~-~~~~~~~~~~i~Dt~G~~~~-------~~~--   70 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ----TSIT-DSSAIYK-VNNNRGNSLTLIDLPGHESL-------RFQ--   70 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBC----CCCS-CEEEEEE-CSSTTCCEEEEEECCCCHHH-------HHH--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccc----CCcc-eeeEEEE-ecCCCccEEEEEECCCChhH-------HHH--
Confidence            4589999999999999999999977642222    1111 1222233 33   568999999995431       111  


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhh----CccccCeEEEEEeCCCCCCC
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~nk~D~~~~  152 (301)
                       ....+++++|++++|+|+++ +..........+...+    ......|+++|+||+|+...
T Consensus        71 -~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           71 -LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             -HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             -HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence             22233667899999999983 3222222333333221    11112399999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=1.1e-16  Score=127.55  Aligned_cols=164  Identities=15%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-C   96 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-~   96 (301)
                      ...+|+|+|++|+|||||+|+|++...+....  .+.|.......+. .++..+.+|||||.........  .+.+.. +
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEE-eCCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence            45799999999999999999999876433322  2333333333333 5678999999999887543211  111111 1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      +.  ...++++++|+|.. .+ .....++..+..   ..  .|+++++||+|....  ..        .......+...+
T Consensus        81 ~~--~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~~  141 (188)
T 2wjg_A           81 II--NEKPDLVVNIVDAT-AL-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LG--------IEIDVDKLEKIL  141 (188)
T ss_dssp             HH--HHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---TT--CCEEEEEECHHHHHH--TT--------CCCCHHHHHHHH
T ss_pred             Hh--ccCCCEEEEEecch-hH-HHHHHHHHHHHh---cC--CCEEEEEEhhhcccc--cc--------chHHHHHHHHHh
Confidence            11  12469999999997 22 122333333332   22  289999999996432  11        111245555556


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +..++.      +|++.+.+++++++++...+...
T Consensus       142 ~~~~~~------~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          142 GVKVVP------LSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             TSCEEE------CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             CCCeEE------EEecCCCCHHHHHHHHHHHHHhc
Confidence            666666      78889999999999998887653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.72  E-value=5.8e-17  Score=127.93  Aligned_cols=164  Identities=17%  Similarity=0.079  Sum_probs=99.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ...+|+|+|++|+|||||+|++++...........+.  ......+. .++   ..+.+|||||.......       ..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~~   74 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL--DFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------LD   74 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTS--SEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------HH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeE--EEEEEEEE-eCCCCEEEEEEEECCCCccccch-------hh
Confidence            4589999999999999999999976642211111111  12222222 333   68899999997654321       11


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      .    ++..+|++++|+|++++.+... ..++..+..........| +++|+||+|+........++         ...+
T Consensus        75 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~  141 (178)
T 2hxs_A           75 K----YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HLRF  141 (178)
T ss_dssp             H----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HHHH
T ss_pred             H----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HHHH
Confidence            1    2456799999999984433222 234444444321100124 88999999976431011111         2334


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+..++.      +|++++.+++++++++...+..
T Consensus       142 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          142 CQENGFSSHF------VSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            4445656665      7888899999999999887654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=5.7e-17  Score=140.11  Aligned_cols=176  Identities=14%  Similarity=0.141  Sum_probs=98.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CC-C---cceee---------------------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SS-G---VTKTC---------------------------------   58 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~-~---~t~~~---------------------------------   58 (301)
                      ..++|+|+|++|+|||||+|+|+|...++.+..  .. +   .++..                                 
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            457899999999999999999999886444321  11 1   11110                                 


Q ss_pred             ------------------EeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecC-CCC
Q 022188           59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF  117 (301)
Q Consensus        59 ------------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~  117 (301)
                                        ....+....+..+.+|||||+.+....  ...+...+......+...+|++++|++++ ..+
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                              000012124568999999999752210  01112223333334455779999999974 444


Q ss_pred             CHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccc---
Q 022188          118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---  193 (301)
Q Consensus       118 ~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---  193 (301)
                      ...+ ...+..+.. .+    .|+++|+||+|..... ....+++..        .+..++..++++.+   .++.+   
T Consensus       183 ~~~~~~~i~~~~~~-~~----~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~~  245 (315)
T 1jwy_B          183 ANSDALQLAKEVDP-EG----KRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVIN---RSQEDIIA  245 (315)
T ss_dssp             TTCSHHHHHHHHCS-SC----SSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCC---CCHHHHSS
T ss_pred             hhhHHHHHHHHhCC-CC----CcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEec---CChhhhcc
Confidence            4333 344444432 12    3999999999987551 112222221        00111233444333   44444   


Q ss_pred             hhHHHHHHHHHHHHHhh
Q 022188          194 TEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       194 ~~~~~~L~~~l~~~~~~  210 (301)
                      +.++.++++.+...++.
T Consensus       246 ~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          246 KKSIRESLKSEILYFKN  262 (315)
T ss_dssp             SCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhC
Confidence            67899999999888876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.72  E-value=8.6e-17  Score=145.13  Aligned_cols=174  Identities=20%  Similarity=0.247  Sum_probs=104.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHH----HH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVG----KE   92 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~----~~   92 (301)
                      ...+|+|+|++|+|||||+|+|+|......  +..+.|+.........+++..+.+|||||+....... +...    ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v--~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEE--CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccccc--CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            458999999999999999999999875222  2222233322222233678899999999985422111 0000    00


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ....    +..+|++++|+|+..+.+..+......+.. .+.    |+++++||+|.........+++...     +...
T Consensus       257 ~~~~----i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~  322 (439)
T 1mky_A          257 VVDS----IEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREK  322 (439)
T ss_dssp             HHHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred             HHHH----HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence            1122    234599999999987777776655555543 233    8999999999875421223333222     2222


Q ss_pred             HHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188          173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (301)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  213 (301)
                      +... +.+++.      +||+++.++++|++.+...+.....
T Consensus       323 ~~~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~  358 (439)
T 1mky_A          323 LYFIDYSPLIF------TSADKGWNIDRMIDAMNLAYASYTT  358 (439)
T ss_dssp             CGGGTTSCEEE------CBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             hccCCCCcEEE------EECCCCCCHHHHHHHHHHHHHhhcc
Confidence            2212 234454      8999999999999999888766543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=1.2e-16  Score=128.23  Aligned_cols=165  Identities=18%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.... ..   ...|+..........++  ..+.+|||||......           
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------   81 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EE---YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------   81 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-CS---CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-----------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CC---CCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-----------
Confidence            3479999999999999999999977542 11   11122111111122344  5788999999766421           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-Cch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~  168 (301)
                      ....++..+|++++|+|++++.+-...  .++..+....+ .  .|+++|+||+|+...  ....+.+..    .. ...
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  156 (194)
T 2atx_A           82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ  156 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence            123356788999999999844332222  45556655433 2  399999999998754  222111110    00 011


Q ss_pred             HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+....+. .++.      +|++++.+++++++++.+.+
T Consensus       157 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          157 GQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             HHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence            2334444454 5555      78889999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.72  E-value=6.5e-17  Score=129.73  Aligned_cols=165  Identities=10%  Similarity=0.025  Sum_probs=100.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEE--ee--CCeeEEEEeCCCCCCCCCCcH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV--LK--DGQVVNVIDTPGLFDLSAGSE   87 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~--~~--~~~~~~liDtPG~~~~~~~~~   87 (301)
                      ...+|+|+|++|+|||||++.+.|.........      ....|.........  ..  ....+.+|||||.....    
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----   88 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN----   88 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence            458999999999999999999987654221110      01122221111100  11  23468999999976532    


Q ss_pred             HHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHH----HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH----RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~----~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                             .....+++.+|++++|+|++.+........+.    ++.+.-......|+++|+||+|+...  ...++    
T Consensus        89 -------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~----  155 (198)
T 3t1o_A           89 -------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM----  155 (198)
T ss_dssp             -------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred             -------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence                   11122467789999999998443333333333    33332111122399999999998654  22222    


Q ss_pred             cCCchHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                           +..+....+. .++.      +||+++.+++++++++...+..
T Consensus       156 -----~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          156 -----VRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             -----HHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence                 3344444555 5665      8999999999999999876543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=6e-16  Score=135.91  Aligned_cols=168  Identities=17%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK   95 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~~~   95 (301)
                      ....+|+++|++|+|||||+|+|++.......  ....|......... ..+..+.+|||||+.+..... ..+...   
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIEKQ---  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHHHH---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHHHH---
Confidence            34579999999999999999999998742221  12333333333333 467789999999987643321 111111   


Q ss_pred             HHhccCCCccEEEEEEecCCCC--CHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      .+......+|++++|+|++++.  +... ..++..+...++ +  .|+++|+||+|....  ..+++         ....
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~--~piilV~NK~Dl~~~--~~~~~---------~~~~  304 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-D--LPFLVVINKIDVADE--ENIKR---------LEKF  304 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-T--SCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-C--CCEEEEEECcccCCh--HHHHH---------HHHH
Confidence            2222344679999999987432  4443 556666666553 2  399999999997654  22322         2223


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+.+++.      +||+++.|+++|++++...+..
T Consensus       305 ~~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          305 VKEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence            3344555555      7888999999999999877643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.72  E-value=6.4e-17  Score=130.97  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCccee--eEeEEEEeeC----CeeEEEEeCCCCCCCCCCcHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEFV   89 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~liDtPG~~~~~~~~~~~   89 (301)
                      ...+|+|+|++|+|||||+|++++.  ... .   ....|+.  .....+. .+    ...+.+|||||...        
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~---~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~--------   85 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-K---DYAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSDL--------   85 (208)
T ss_dssp             EEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTHH--------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCccc-C---CCCCccceEEEEEEEE-ECCcccEEEEEEEECCCcHH--------
Confidence            3479999999999999999999987  321 1   1122222  1222223 34    34789999999532        


Q ss_pred             HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC---ccccCeEEEEEeCCCCCC-CccccHHHHhccc
Q 022188           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG---KNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHE  164 (301)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~---~~~~~~~ilv~nk~D~~~-~~~~~~~~~~~~~  164 (301)
                         +......++..+|++++|+|++++.+... ..++..+....+   ..  .|+++|+||+|+.. ......+      
T Consensus        86 ---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~--~piilv~nK~Dl~~~~~~v~~~------  154 (208)
T 2yc2_C           86 ---YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP--LRAVLVANKTDLPPQRHQVRLD------  154 (208)
T ss_dssp             ---HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC--CEEEEEEECC-------CCCHH------
T ss_pred             ---HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC--CcEEEEEECcccchhhccCCHH------
Confidence               33344556788999999999985433233 345555555433   23  39999999999865 2101111      


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccc-hhHHHHHHHHHHHHHh
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV  209 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~~~~  209 (301)
                         ....+....+..++.      +|+++ +.+++++++++...+.
T Consensus       155 ---~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          155 ---MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             ---HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence               134455556666665      78888 8999999999877654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=2.3e-17  Score=130.91  Aligned_cols=163  Identities=16%  Similarity=0.102  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||+|++++.......+ ..+.    ....+. .++..+.+|||||......           ..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~----~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~~   79 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGF----NVETLS-YKNLKLNVWDLGGQTSIRP-----------YW   79 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTC----CEEEEE-ETTEEEEEEEEC----CCT-----------TG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCcc----ceEEEE-ECCEEEEEEECCCCHhHHH-----------HH
Confidence            45899999999999999999999766522221 1121    112222 5678999999999765322           12


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ..  .. .....
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~  152 (183)
T 1moz_A           80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKE-LN--LV-ELKDR  152 (183)
T ss_dssp             GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHH-TT--TT-TCCSS
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHHH-hC--cc-cccCC
Confidence            334678899999999985544333 233333322210 122399999999998654  222222111 00  00 00001


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +..++.      +|++++.+++++++++.+.+..
T Consensus       153 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          153 SWSIVA------SSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             CEEEEE------EBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ceEEEE------ccCCCCcCHHHHHHHHHHHHHh
Confidence            112333      7899999999999999877643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.71  E-value=1.3e-17  Score=150.47  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|++|+|||||+|+|+|....... ...+.|....... ..+.+..+.+|||||+......   +.+.+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEE-CTTCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEE-EEECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence            67999999999999999999987652211 1223343333333 3367788999999998642211   23344444444


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (301)
                      ++..+|++++|+|+..+++..+..+...+... +    .|+++++||+|....  .   .....        +. ..+. 
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~-~----~pvilv~NK~D~~~~--~---~~~~~--------~~-~lg~~  139 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD--------FY-SLGFG  139 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC-C----SCEEEEEECCCC----------CCCS--------SG-GGSSC
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCccc--h---hhHHH--------HH-HcCCC
Confidence            45677999999999988888877666666532 2    399999999997643  1   00111        11 1121 


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++      +||.++.|+.+|++++...++.
T Consensus       140 ~~~~------iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          140 EPYP------ISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             CCEE------CBTTTTBTHHHHHHHHHHTGGG
T ss_pred             CeEE------EeCcCCCChHHHHHHHHHhcCc
Confidence            3333      7999999999999999887764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=1.1e-16  Score=129.84  Aligned_cols=166  Identities=19%  Similarity=0.136  Sum_probs=100.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||+|++++.......    ..|+..........++  ..+.+|||||......           .
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~   89 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-----------L   89 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-----------T
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-----------H
Confidence            469999999999999999999987652221    1111111111122344  4689999999765421           1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPL  169 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l  169 (301)
                      ...++..+|++++|+|++++.+...  ..++..+..... .  .|+++|+||+|+...  ....+.+...    .. ...
T Consensus        90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~  164 (207)
T 2fv8_A           90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDDG  164 (207)
T ss_dssp             GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHHH
T ss_pred             HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHHH
Confidence            2234678899999999984322222  345555555432 2  299999999998654  2222222110    00 012


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+....+. .++.      +|++++.|+++|+++|.+.+..
T Consensus       165 ~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          165 RAMAVRIQAYDYLE------CSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCCEEEE------eeCCCCCCHHHHHHHHHHHHHH
Confidence            233444444 4555      7888999999999999877643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.71  E-value=2.6e-16  Score=142.56  Aligned_cols=158  Identities=20%  Similarity=0.230  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc-ceeeEeEEEEeeCCeeEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~   96 (301)
                      .+|+|+|.+|+|||||+|+|++.....  ....+. |.......+. .++..+.+|||||+. .+....+.. .+.....
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--vs~~~gTT~d~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCc--cCCCCCeeeeeEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            689999999999999999999876421  222233 3333223333 678899999999987 543211110 0111222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      +    ..+|++|+|+|++++.+..+...++.+    . .  .|+++|+||+|+...  ...++         +..+.. .
T Consensus       321 ~----~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~  377 (482)
T 1xzp_A          321 I----EKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-T  377 (482)
T ss_dssp             H----HHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-C
T ss_pred             h----hcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-C
Confidence            2    345999999999877777665554433    2 2  299999999998643  22221         222221 1


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      +|++++.|+++|+++|...+.
T Consensus       378 ~~~~i~------iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          378 DRHMVK------ISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             STTEEE------EEGGGTCCHHHHHHHHHHHTH
T ss_pred             CCcEEE------EECCCCCCHHHHHHHHHHHHh
Confidence            234554      899999999999999987643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.71  E-value=2.4e-16  Score=125.49  Aligned_cols=161  Identities=18%  Similarity=0.124  Sum_probs=99.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      +.....+|+|+|.+|+|||||+|++++.......    ..|...... ....++.  .+.+|||||....         .
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~---------~   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKK-EIVVDGQSYLLLIRDEGGPPEL---------Q   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEE-EEEETTEEEEEEEEECSSSCCH---------H
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEE-EEEECCEEEEEEEEECCCChhh---------h
Confidence            3345689999999999999999999876642211    112211112 2224554  5677999997652         1


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                         ++    ..+|++++|+|++++.+... ..++..+..... ....|++++.||+|+.......+.       ......
T Consensus        82 ---~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~  146 (184)
T 3ihw_A           82 ---FA----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRARK  146 (184)
T ss_dssp             ---HH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHHH
T ss_pred             ---ee----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHHH
Confidence               22    34599999999985443333 344455544321 122399999999997422001110       011334


Q ss_pred             HHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +....+ ..++.      +||+++.+++++++++...+..
T Consensus       147 ~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          147 LSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             HHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence            555555 45555      7888999999999999876544

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=3.1e-16  Score=125.97  Aligned_cols=162  Identities=18%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ....+|+|+|.+|+|||||+|++++........    .|...........++  ..+.+|||||...    . .   ...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~-~---~~~   93 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED----T-I---QRE   93 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC----C-H---HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc----c-c---chh
Confidence            356899999999999999999999876422211    121111111122343  4689999999776    1 1   122


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .++    ..+|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|+........++         ...+.
T Consensus        94 ~~~----~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~  159 (196)
T 2atv_A           94 GHM----RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE---------GEKLA  159 (196)
T ss_dssp             HHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             hhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence            222    34499999999984333222 3344555543221 123999999999976431111111         23344


Q ss_pred             HHcCCceEEecCCCcccccchh-HHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +|++++. +++++++++...+..
T Consensus       160 ~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          160 TELACAFYE------CSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             HHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence            444556665      7888888 999999999776543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.71  E-value=2.4e-16  Score=143.40  Aligned_cols=161  Identities=19%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc---c-c-cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF---K-A-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~---~-~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ..+|+++|+.++|||||+|+|++....   . . .....+.|.......+. .++..+.+|||||..+           +
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh~~-----------~   86 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHAD-----------L   86 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHHH-----------H
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCChHH-----------H
Confidence            479999999999999999999987611   0 0 01122345444444333 5778999999999422           3


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ...+...+..+|++++|+|++++......+.+..+.. ++.    |.++++||+|+...  ..++....+     +..++
T Consensus        87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~l  154 (482)
T 1wb1_A           87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL  154 (482)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHHH
Confidence            3333344567899999999997777887777776654 343    78999999998754  344444443     55555


Q ss_pred             HHc----CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLC----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...    ..++++      .||.++.++++|++.|...++
T Consensus       155 ~~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          155 QSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhcccccceEEE------EECcCCCCHHHHHHHHHHhhc
Confidence            544    234454      788889999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.71  E-value=1.9e-16  Score=129.26  Aligned_cols=167  Identities=11%  Similarity=0.035  Sum_probs=103.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++.......    ..|...........+  ...+.+|||||.....           .
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   90 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPYYD-----------N   90 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-----------T
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-----------H
Confidence            4689999999999999999999977642211    122222211111122  3478999999965421           2


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh-c----ccCCch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-G----HECPKP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~-~----~~~~~~  168 (301)
                      ....++..+|++++|+|++++.+...  ..++..+..... ..  |+++|.||+|+...  ......+ .    .-....
T Consensus        91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~--piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  165 (214)
T 3q3j_B           91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-ST--RVLLIGCKTDLRTD--LSTLMELSHQKQAPISYEQ  165 (214)
T ss_dssp             TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TS--EEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEEChhhccc--hhhhhhhcccccCccCHHH
Confidence            23345778899999999995444333  345566665533 23  99999999997643  1000000 0    000111


Q ss_pred             HHHHHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHHHhh
Q 022188          169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ  210 (301)
Q Consensus       169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~  210 (301)
                      ...+....+. .++.      +||+++.+ ++++++.+...+..
T Consensus       166 ~~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          166 GCAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhc
Confidence            3345555566 6666      88889998 99999999877654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.71  E-value=2.1e-16  Score=126.10  Aligned_cols=161  Identities=19%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++.... ..   ...|...........++  ..+.+|||||......        +..
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~   87 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CER   87 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHH
Confidence            4589999999999999999999977642 11   12222222111122343  4678999999765432        111


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                          ++..+|++++|+|++++-+-.. ..++..+...... ....|+++|+||+|+........++         ...+.
T Consensus        88 ----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~  154 (187)
T 3c5c_A           88 ----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVALA  154 (187)
T ss_dssp             ----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHHHH
T ss_pred             ----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHHHH
Confidence                2356799999999984333332 2344555443210 0123999999999975431011111         23344


Q ss_pred             HHcCCceEEecCCCcccc-cchhHHHHHHHHHHHHHh
Q 022188          174 QLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+..++.      +|+ +++.+++++++.+.+.+.
T Consensus       155 ~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          155 GRFGCLFFE------VSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHTCEEEE------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHcCCcEEE------EeecCccccHHHHHHHHHHHHh
Confidence            555666665      788 789999999999877653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.71  E-value=1.9e-16  Score=127.30  Aligned_cols=175  Identities=12%  Similarity=0.055  Sum_probs=96.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      +.....+|+|+|.+|+|||||+|.+++........ ....+...............+.+|||||..........    ..
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----~~   90 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----YE   90 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----HH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----cc
Confidence            33456899999999999999999999864322111 11112221111111123468899999997664321100    01


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .    ++.++|++++|+|+++++......+..++.+........|+++|.||+|+...  ....+....-.......+..
T Consensus        91 ~----~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~~~~  164 (196)
T 3llu_A           91 M----IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDDLAD  164 (196)
T ss_dssp             H----HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             c----ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHHHHH
Confidence            2    23456999999999966434444555555554111112399999999997653  11100000000000122333


Q ss_pred             ----HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          175 ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       175 ----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                          ..+..++.      +||++ .++.+++..+.+.
T Consensus       165 ~~~~~~~~~~~e------~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          165 AGLEKLHLSFYL------TSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             TTCTTSCEEEEE------ECTTS-THHHHHHHHHHHH
T ss_pred             hhhhcCCcceEE------EEech-hhHHHHHHHHHHH
Confidence                23334444      78888 9999999988654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.70  E-value=8.7e-17  Score=127.69  Aligned_cols=162  Identities=15%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|++|+|||||++++++.......     .|.......+. .++..+.+|||||....           ....
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~-~~~~~l~i~Dt~G~~~~-----------~~~~   77 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRKI-----------RPYW   77 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGGG-----------HHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEE-ECCEEEEEEECCCCHHH-----------HHHH
Confidence            4589999999999999999999987542111     11111122223 56788999999996542           1122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++-+-.. ..++..+..... ....|++++.||+|+...  ...++.... ..  +. .....
T Consensus        78 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~~-~~~~~  150 (181)
T 1fzq_A           78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-LN--LH-TIRDR  150 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCSS
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHH-hC--ch-hccCC
Confidence            234567899999999985433333 223332222111 112399999999998755  333222111 00  00 00001


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..++.      +||+++.|++++++++...+.
T Consensus       151 ~~~~~~------~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          151 VWQIQS------CSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             CEEEEE------CCTTTCTTHHHHHHHHHHTC-
T ss_pred             ceEEEE------ccCCCCCCHHHHHHHHHHHHH
Confidence            122333      788999999999999976553

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.70  E-value=9.8e-18  Score=149.36  Aligned_cols=166  Identities=18%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ....++|+|+|++|+|||||+|+|++....... ...+.|...............+.+|||||+.++........+....
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence            345689999999999999999999987752222 1233444444444442333489999999998765432211112222


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                          ++..+|++++|+|+  .....+..++..+.+. +  .  |+++|+||+|....  ... +.        ...+...
T Consensus       110 ----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~--~--piIvV~NK~Dl~~~--~~~-~~--------~~~l~~~  167 (423)
T 3qq5_A          110 ----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E--I--PFVVVVNKIDVLGE--KAE-EL--------KGLYESR  167 (423)
T ss_dssp             ----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T--C--CEEEECCCCTTTTC--CCT-HH--------HHHSSCC
T ss_pred             ----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C--C--CEEEEEeCcCCCCc--cHH-HH--------HHHHHHH
Confidence                34567999999998  4667777788887765 2  2  99999999998765  221 11        1112222


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+.++      ...|++++.+++++++.|.+.++.
T Consensus       168 ~g~~v------~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          168 YEAKV------LLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             TTCCC------CCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             cCCCE------EEEECCCCCCHHHHHHHHHHhhhh
Confidence            23333      348899999999999999998854

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.70  E-value=8.9e-18  Score=137.71  Aligned_cols=162  Identities=16%  Similarity=0.063  Sum_probs=100.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|.+|+|||||+|+++............+.+......... ..+..+.+|||||........           
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~-----------   81 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLR-----------   81 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCC-----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHH-----------
Confidence            45899999999999999999944322111111222223322222111 234578999999965433211           


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..+|++++|+|++++.+... ..++..+..... .  .|+++|+||+|+...  .... .        ...+....
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~--------~~~~~~~~  147 (221)
T 3gj0_A           82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-K--------SIVFHRKK  147 (221)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-G--------GCCHHHHH
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-H--------HHHHHHHc
Confidence            112456799999999985433332 345555555433 2  299999999998654  1111 1        12233444


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +..++.      +|++++.++++++.++...+...
T Consensus       148 ~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          148 NLQYYD------ISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TCEEEE------CBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence            666666      78999999999999998877543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.70  E-value=3e-16  Score=124.76  Aligned_cols=166  Identities=14%  Similarity=0.102  Sum_probs=99.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++.......    ..|...........+  ...+.+|||||.....           .
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   70 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N   70 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence            4589999999999999999999976542111    112211111111123  3478999999965421           1


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---cCC-chH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL  169 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~~~-~~l  169 (301)
                      ....++..+|++++|+|++++.+...  ..++..+....+ .  .|+++|.||+|+.... ....+....   ... ...
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  146 (184)
T 1m7b_A           71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG  146 (184)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred             hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence            12335678899999999985433333  234455555433 2  3999999999976431 111111100   000 113


Q ss_pred             HHHHHHcC-CceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 022188          170 KEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI  208 (301)
Q Consensus       170 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~  208 (301)
                      ..+....+ ..++.      +||+ .+.+++++++.+.+.+
T Consensus       147 ~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          147 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             HHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence            34444445 35555      7887 6899999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.70  E-value=2e-16  Score=126.81  Aligned_cols=163  Identities=10%  Similarity=0.022  Sum_probs=93.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+..+|+|+|++|+|||||+|++++......     .+|.......+. ..+..+.+|||||......       .... 
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~-   92 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNICFTVWDVGGQDKIRP-------LWRH-   92 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CT-------THHH-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEE-ECCEEEEEEECCCCHhHHH-------HHHH-
Confidence            3468999999999999999999987664221     112222222233 5778999999999765322       1111 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         ++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+...  ...++.... ...   .....
T Consensus        93 ---~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~~---~~~~~  162 (192)
T 2b6h_A           93 ---YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDK-LGL---QHLRS  162 (192)
T ss_dssp             ---HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCSS
T ss_pred             ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHH-hCc---ccccC
Confidence               2346699999999985433332 223332222110 012399999999998654  233322221 000   00001


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++      .+|++++.+++++++++.+.+.
T Consensus       163 ~~~~~~------~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          163 RTWYVQ------ATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             CCEEEE------ECBTTTTBTHHHHHHHHHHHTT
T ss_pred             CceEEE------ECcCCCcCCHHHHHHHHHHHHh
Confidence            111233      3788899999999999977653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.70  E-value=7.6e-17  Score=129.06  Aligned_cols=163  Identities=7%  Similarity=-0.029  Sum_probs=94.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+..+|+++|++|+|||||+|++++......     ..|.......+. .++..+.+|||||......           .
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELA-IGNIKFTTFDLGGHIQARR-----------L   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEE-ETTEEEEEEECCCSGGGTT-----------S
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEE-ECCEEEEEEECCCCHHHHH-----------H
Confidence            3457999999999999999999997664221     112222222233 5678999999999765321           1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch---HHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP---LKEI  172 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~---l~~~  172 (301)
                      ...++..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+...  ...++.... ....   -...
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~~~~~~~~~  159 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNA--VSEAELRSA-LGLLNTTGSQR  159 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TTCSSCCC---
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCC--CCHHHHHHH-hCCcccccccc
Confidence            2334678899999999985443333 233333322111 112399999999998653  222222111 0000   0000


Q ss_pred             H-HHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          173 L-QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      + ...+.+++.      +|++++.|++++++++.+
T Consensus       160 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          160 IEGQRPVEVFM------CSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CCSSCCEEEEE------CBTTTTBSHHHHHHHHHT
T ss_pred             ccccceEEEEE------eECCcCCCHHHHHHHHHh
Confidence            0 001122333      789999999999998854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.70  E-value=1.4e-17  Score=150.99  Aligned_cols=162  Identities=17%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+|+|.+|+|||||+|+|+|...... ....+.|....... ..+.+..+.+|||||+......   +.+++.....
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~-~~~~~~~~~liDT~G~~~~~~~---~~~~~~~~~~   97 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAE   97 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEE-CTTCSSCCEEECCCC------C---CHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEE-EEECCceEEEEECCCCCCcchH---HHHHHHHHHH
Confidence            46899999999999999999998765211 12234444433333 3367789999999998743221   2234444444


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .++..+|++|+|+|+..+++..+..+++.+... +    .|+++++||+|....  .   ..... +   +.   ..+ .
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-~----~pvilV~NK~D~~~~--~---~~~~e-~---~~---lg~-~  159 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD-F---YS---LGF-G  159 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-C----SCEEEEEECC--------------CC-S---GG---GSS-S
T ss_pred             hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-C----CCEEEEEECccchhh--h---hhHHH-H---HH---cCC-C
Confidence            455667999999999888999888877777652 2    399999999997533  1   11111 0   00   111 1


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+      ..||..+.++.+|++.+...++
T Consensus       160 ~~~------~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          160 EPY------PISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             SEE------ECCTTTCTTHHHHHHHHHTTGG
T ss_pred             ceE------EeecccccchHHHHHHHHhhcc
Confidence            223      3788889999999999877665

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.70  E-value=4.1e-17  Score=129.26  Aligned_cols=165  Identities=18%  Similarity=0.088  Sum_probs=94.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||+|++++......    ...|+..........+  ...+.+|||||......           
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------   71 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD----YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-----------   71 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTT-----------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-----------
Confidence            458999999999999999999997653211    1112111111001122  33567999999765321           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh---cccCCchHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL---GHECPKPLK  170 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~---~~~~~~~l~  170 (301)
                      ....++..+|++++|+|++++.+....  .++..+....+ .  .|+++|+||+|+...  .......   ..-......
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~  146 (182)
T 3bwd_D           72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE  146 (182)
T ss_dssp             TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred             hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence            123346778999999999844333332  35555655433 2  399999999997644  2110000   000001123


Q ss_pred             HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+....+. .++.      +||+++.+++++++.+.+.+
T Consensus       147 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          147 ELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence            44444554 5555      88899999999999997765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.70  E-value=9.1e-17  Score=130.71  Aligned_cols=167  Identities=19%  Similarity=0.117  Sum_probs=102.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|++|+|||||++++++.......    ..|...........++  ..+.+|||||......           
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------   72 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-----------   72 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-----------
Confidence            4589999999999999999999976542111    1121111111111333  4789999999866432           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-CCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-~~~~l~~~  172 (301)
                      ....++..+|++++|+|++++.+....  .++..+....+ .  .|+++|+||+|+...  ..+....... .......+
T Consensus        73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~  147 (212)
T 2j0v_A           73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEEL  147 (212)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHH
T ss_pred             HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHH
Confidence            112346788999999999844333332  45555555433 2  399999999997644  1110000000 00112344


Q ss_pred             HHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+. .++.      +|++++.+++++++++...+..
T Consensus       148 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          148 RKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             HHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhh
Confidence            455554 5665      7888999999999999887754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.69  E-value=6.8e-17  Score=130.23  Aligned_cols=155  Identities=11%  Similarity=0.040  Sum_probs=91.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+++|++|+|||||+|++++....... ...+.+    ...+. .++..+.+|||||......           ..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~   86 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT----SEELT-IAGMTFTTFDLGGHIQARR-----------VW   86 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEE-ETTEEEEEEEECC----CC-----------GG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCce----eEEEE-ECCEEEEEEECCCcHhhHH-----------HH
Confidence            4579999999999999999999987642211 111222    12223 5678999999999654321           12


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-  175 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-  175 (301)
                      ..+++.+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+...  ...++.         ...+.. 
T Consensus        87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~  154 (198)
T 1f6b_A           87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEA--ISEERL---------REMFGLY  154 (198)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTC--CCHHHH---------HHHHTCT
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcccc--CCHHHH---------HHHhCcc
Confidence            234567899999999985433332 233333322110 112399999999998643  222221         111110 


Q ss_pred             ----------------cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          176 ----------------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       176 ----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                                      .+..++.      +||+++.|++++++++.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          155 GQTTGKGSVSLKELNARPLEVFM------CSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTCCCSSCCCTTTCCSCCEEEEE------CBTTTTBSHHHHHHHHHTT
T ss_pred             cccccccccccccccCceEEEEE------EECCCCCCHHHHHHHHHHh
Confidence                            1122333      7899999999999998643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.69  E-value=1e-18  Score=140.95  Aligned_cols=161  Identities=19%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|+|++........  ...+.......+. .++  ..+.+|||||.......          
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~----------   98 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRTI----------   98 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCCC----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHHH----------
Confidence            35899999999999999999999866522211  1112222222222 444  46899999996653321          


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                       ...++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+...  ..+.       ......+..
T Consensus        99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~~  166 (199)
T 3l0i_B           99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVD-------YTTAKEFAD  166 (199)
T ss_dssp             -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCC-------SCC-CHHHH
T ss_pred             -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCC-------HHHHHHHHH
Confidence             1234577899999999985443333 33444444433222  399999999997643  1110       011233444


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+..++      .+|++++.++++++++|.+.+.
T Consensus       167 ~~~~~~~------~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          167 SLGIPFL------ETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             TTTCCBC------CCCC---HHHHHHHHHHTTTTT
T ss_pred             HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence            4454443      3788999999999999876553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.69  E-value=1.9e-16  Score=126.30  Aligned_cols=164  Identities=17%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|++|+|||||+|++++... .... ..+.|......  . ..  .+.+|||||+......+....+.+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~-~~~~t~~~~~~--~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGK-RPGVTRKIIEI--E-WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCC-SSSS-STTCTTSCEEE--E-ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCC-ccCC-CCCccceeEEE--e-cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            5799999999999999999998864 2221 12333332222  2 22  789999999876554433222222222221


Q ss_pred             c----CCCccEEEEEEecCCCCCHHHHHHHH---------HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188          100 A----KDGIHAFLVVFSVTNRFSQEEETAVH---------RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (301)
Q Consensus       100 ~----~~~~~~il~v~~~~~~~~~~~~~~l~---------~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~  166 (301)
                      +    ...++++++|+|.. .+......+..         .+.......  .|+++|+||+|....  .  .+.      
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~------  141 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEV------  141 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHH------
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHH------
Confidence            2    34456777777775 22111111111         111111112  299999999998755  2  111      


Q ss_pred             chHHHHHHHcCCc-------eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          167 KPLKEILQLCDNR-------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       167 ~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                        ...+....+..       ++.      +|++++.+++++++++.+.+...
T Consensus       142 --~~~~~~~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          142 --INFLAEKFEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             --HHHHHHHHTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHhhhhhhccCCcEEE------EecCCCCCHHHHHHHHHHhcchh
Confidence              22333444432       344      78889999999999998877653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.69  E-value=3.4e-16  Score=123.62  Aligned_cols=156  Identities=19%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+|+|.+|+|||||+|++++..... . .+   |...........++  ..+.+|||||...            ..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~   68 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-L-EK---TESEQYKKEMLVDGQTHLVLIREEAGAPD------------AK   68 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-SS---CSSSEEEEEEEETTEEEEEEEEECSSSCC------------HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-c-CC---CcceeEEEEEEECCEEEEEEEEECCCCch------------hH
Confidence            45899999999999999999999876532 1 11   11111111122344  3578999999654            11


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCC--ccccHHHHhcccCCchHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~  171 (301)
                      +    ++++|++++|+|++++.+... ..++.++...... ....|+++|.||+|+...  .....++         ...
T Consensus        69 ~----~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~~  135 (178)
T 2iwr_A           69 F----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------ARA  135 (178)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HHH
T ss_pred             H----HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HHH
Confidence            2    234599999999985443333 2333345444221 012399999999997421  0011111         223


Q ss_pred             HHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.... +..++.      +||+++.+++++++++...+.
T Consensus       136 ~~~~~~~~~~~~------~Sa~~~~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          136 LXADMKRCSYYE------TXATYGLNVDRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHHSSEEEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHhhcCCeEEE------EeccccCCHHHHHHHHHHHHH
Confidence            33333 344554      788889999999999876553

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.68  E-value=3.9e-17  Score=141.85  Aligned_cols=170  Identities=18%  Similarity=0.118  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      .|+|+|.+|||||||+|+|++.......  ....|.......+...++..+.+|||||+.........+...+.+.+.. 
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~-  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence            6899999999999999999987642211  1222333332223322347899999999754211112233444444443 


Q ss_pred             CCCccEEEEEEecCC---CCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188          101 KDGIHAFLVVFSVTN---RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus       101 ~~~~~~il~v~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                         ++++|+|+|+++   +-...+ ..++..+..........|+++|+||+|+...  .   +.        +..+...+
T Consensus       237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~---e~--------~~~l~~~l  300 (342)
T 1lnz_A          237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A---EN--------LEAFKEKL  300 (342)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H---HH--------HHHHHHHC
T ss_pred             ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H---HH--------HHHHHHHh
Confidence               499999999984   232233 3344555543211123499999999997643  1   11        22233333


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  213 (301)
                      ...    .....+||.++.++++|+.+|...+.....
T Consensus       301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          301 TDD----YPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            321    122347889999999999999998876544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.68  E-value=1.1e-16  Score=146.62  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc----------------cc----CCCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (301)
                      ..++|+|+|++|+|||||+|+|++.....                ..    ....+.|.......+. +.+..++|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECC
Confidence            45899999999999999999996211100                00    0001233333333334 678899999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      |+.++..       ....    ++..+|++|+|+|++.+.+......+..+... +  .  |+++++||+|....
T Consensus        91 G~~df~~-------~~~~----~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~--i--PiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTE-------DTYR----TLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H--T--PIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCH-------HHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSCCS
T ss_pred             CchhHHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CEEEEEeCCCCccc
Confidence            9887532       2333    34566999999999988888888877766543 3  2  99999999998644

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.68  E-value=4.5e-16  Score=133.44  Aligned_cols=173  Identities=12%  Similarity=0.141  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--C-CCc----------------------ceee--------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--S-SGV----------------------TKTC--------------   58 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~-~~~----------------------t~~~--------------   58 (301)
                      ..++|+|+|.+|+|||||+|+|+|....+.+..  . .+.                      |+..              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999886432211  1 010                      1100              


Q ss_pred             ----------EeEEEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCCCccEEE-EEEecCCCCCHHHH-HH
Q 022188           59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE-TA  124 (301)
Q Consensus        59 ----------~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~~  124 (301)
                                ........+...+.+|||||+.....  ....+...+...+..++..++.++ +|+|++..++..+. .+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                      00011112246899999999876431  011111122223333344556555 78999866665553 34


Q ss_pred             HHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHH
Q 022188          125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (301)
Q Consensus       125 l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l  204 (301)
                      ++.+..   ..  .|+++|+||+|..... ....+.+....        ..+...+.+   ....||+++.++++|++.+
T Consensus       185 ~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~~--------~~~~~~~~~---v~~~SA~~~~gi~~l~~~l  247 (299)
T 2aka_B          185 AKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLENKL--------LPLRRGYIG---VVNRSQKDIDGKKDITAAL  247 (299)
T ss_dssp             HHHHCT---TC--SSEEEEEECGGGSCTT-CCCHHHHTTCS--------SCCTTCEEE---CCCCCCBCTTSCBCHHHHH
T ss_pred             HHHhCC---CC--CeEEEEEEccccCCCC-chHHHHHhCCc--------CcCCCCcEE---EECCChhhccccccHHHHH
Confidence            444432   12  3899999999987541 11222222100        001111222   3457888999999999988


Q ss_pred             HHH
Q 022188          205 NSV  207 (301)
Q Consensus       205 ~~~  207 (301)
                      ...
T Consensus       248 ~~~  250 (299)
T 2aka_B          248 AAE  250 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.68  E-value=5.3e-16  Score=138.46  Aligned_cols=165  Identities=15%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-C------------CCCCcceeeEe----EEEEeeCCeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-A------------GSSGVTKTCEM----KTTVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~------------~~~~~t~~~~~----~~~~~~~~~~~~liDtPG~~   80 (301)
                      +..+|+++|++|+|||||+|+|++....... .            .....+.....    ..........+.+|||||..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            4589999999999999999999985431100 0            00000000000    00000112678999999964


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~  159 (301)
                      ++       ...+..    .+..+|++++|+|++.+. .......+..+... +..   |+++++||+|+.+.  ....+
T Consensus        87 ~~-------~~~~~~----~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~~  149 (403)
T 3sjy_A           87 VL-------MATMLS----GAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEALS  149 (403)
T ss_dssp             GG-------HHHHHH----HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHHH
T ss_pred             HH-------HHHHHH----HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHHH
Confidence            42       222333    345679999999999766 55556666655543 432   89999999998765  43444


Q ss_pred             HhcccCCchHHHHHHHcC---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          160 FLGHECPKPLKEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....     +..++...+   .++++      .||.++.++++|++.|...++.
T Consensus       150 ~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          150 QYRQ-----IKQFTKGTWAENVPIIP------VSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHH-----HHHHHHhhCCCCCEEEE------EECCCCcChHHHHHHHHHhCCC
Confidence            3333     444444332   34454      7888999999999999987653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.68  E-value=8.7e-16  Score=124.41  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|++++......    ...|...........++  ..+.+|||||.....           .
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   91 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N   91 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------T
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------H
Confidence            457999999999999999999998664211    11222211111111233  478999999965421           1


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---cCC-chH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL  169 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~~~-~~l  169 (301)
                      ....++..+|++++|+|++++.+...  ..++..+..... .  .|+++|.||+|+.... ....+....   ... ...
T Consensus        92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  167 (205)
T 1gwn_A           92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG  167 (205)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred             HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence            12335678899999999984433333  234455555433 2  3999999999976431 111111110   000 113


Q ss_pred             HHHHHHcC-CceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 022188          170 KEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI  208 (301)
Q Consensus       170 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~  208 (301)
                      ..+....+ ..++.      +||+ .+.+++++++.+.+.+
T Consensus       168 ~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          168 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence            34444545 35555      7887 6889999999987654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.67  E-value=1.2e-15  Score=143.74  Aligned_cols=166  Identities=14%  Similarity=0.191  Sum_probs=102.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce------------------------------------------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK------------------------------------------   56 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~------------------------------------------   56 (301)
                      .++|+|+|.+++|||||+|+|+|..+++.+...  +|.                                          
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~--~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC--SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc--ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            468999999999999999999998876555321  111                                          


Q ss_pred             ---------eeEeEEEEeeCCeeEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH
Q 022188           57 ---------TCEMKTTVLKDGQVVNVIDTPGLFDLSA---GS---EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE  121 (301)
Q Consensus        57 ---------~~~~~~~~~~~~~~~~liDtPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  121 (301)
                               ..-...+...+...++||||||+.....   +.   ..+...+..++   ...+|++++|+|++..+...+
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi---~~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV---TKENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH---TSTTEEEEEEEETTSCSSSCH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH---hcCCcEEEEEEcCCCCcchhH
Confidence                     0001111223445789999999987432   11   22333333333   267899999999987676666


Q ss_pred             H-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHH
Q 022188          122 E-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL  200 (301)
Q Consensus       122 ~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  200 (301)
                      . .++..+... +    .|+++|+||+|...... ...+....          .....+ ..|....+.||.++.|+++|
T Consensus       206 ~l~ll~~L~~~-g----~pvIlVlNKiDlv~~~~-~~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL  268 (772)
T 3zvr_A          206 ALKIAKEVDPQ-G----QRTIGVITKLDLMDEGT-DARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDI  268 (772)
T ss_dssp             HHHHHHHHCTT-C----SSEEEEEECTTSSCTTC-CSHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEH
T ss_pred             HHHHHHHHHhc-C----CCEEEEEeCcccCCcch-hhHHHHHH----------Hhhhhh-ccCCceEEecccccccchhH
Confidence            5 455555432 2    29999999999875511 11111111          000000 11233455789999999999


Q ss_pred             HHHHHH
Q 022188          201 LSLVNS  206 (301)
Q Consensus       201 ~~~l~~  206 (301)
                      ++.+..
T Consensus       269 ~eaI~~  274 (772)
T 3zvr_A          269 TAALAA  274 (772)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.4e-15  Score=123.57  Aligned_cols=163  Identities=20%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ...+|+|+|.+|+|||||+|++++... +.....+.+.+...  ..+. .++.  .+.+|||+|...          ...
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~--~~i~-~~~~~~~l~~~Dt~g~~~----------~~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLM-VDGESATIILLDMWENKG----------ENE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEE-ETTEEEEEEEECCTTTTH----------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEE--EEEE-ECCeeeEEEEeecCCCcc----------hhh
Confidence            347999999999999999999997543 22221122222211  1222 4554  457899998432          111


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      .....++..++++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........++         ...+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a  172 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA  172 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence            122345678899999999984433222 223333433211 1123999999999976431111111         11222


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ...+..++.      +||+++.+++++++.+...+.
T Consensus       173 ~~~~~~~~e------~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          173 VVFDCKFIE------TSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             HHHTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            334555555      899999999999999987654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=137.20  Aligned_cols=161  Identities=12%  Similarity=0.064  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ...+|+|+|.+|+|||||+|+|++.......     +|.......+. ..+..+.||||||......           ..
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE-YKNISFTVWDVGGQDKIRP-----------LW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECC-----CC-----------SH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEe-cCcEEEEEEECCCCHhHHH-----------HH
Confidence            3468999999999999999999987642211     23333333333 5778999999999544322           11


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH-HHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE-ILQ  174 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~-~~~  174 (301)
                      ..++..+|++|+|+|++++-+...  ..+...+.......  .|+++|+||+|+...  ....+....     +.. ...
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~  297 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD--AVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR  297 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCC--CeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh
Confidence            223456799999999985444333  22333333221112  399999999998755  333322221     000 000


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..++.      +|++++.|+++|++.|.+.+..
T Consensus       298 ~~~~~~~~------vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          298 HRNWYIQA------TCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             SSCEEEEE------CBTTTTBTHHHHHHHHHHHHTC
T ss_pred             cCCCEEEE------EECCCCcCHHHHHHHHHHHHHh
Confidence            01122333      7888999999999999877643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.67  E-value=2e-15  Score=135.00  Aligned_cols=165  Identities=13%  Similarity=0.187  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEeEEEEee--------------C--------CeeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI   74 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li   74 (301)
                      ..++|+++|+.++|||||+++|+|...... .....+.|...........              .        ...+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            457999999999999999999997643111 1111233443332221110              0        1678999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      ||||..+           +...+......+|++++|+|++++. .....+.+..+.. ++..   |+++++||+|+... 
T Consensus        89 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~---~iivviNK~Dl~~~-  152 (410)
T 1kk1_A           89 DAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQK---NIIIAQNKIELVDK-  152 (410)
T ss_dssp             ECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCC---CEEEEEECGGGSCH-
T ss_pred             ECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEECccCCCH-
Confidence            9999432           2223333345679999999999665 6666666665554 3432   79999999998754 


Q ss_pred             cccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       ....+....     +..++...   +.++++      .|+.++.++++|++.|...++.
T Consensus       153 -~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          153 -EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             -HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHH-----HHHHHHhcCcCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence             332222332     44444432   234454      7888999999999999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.67  E-value=3.6e-15  Score=133.22  Aligned_cols=165  Identities=15%  Similarity=0.223  Sum_probs=98.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEee--------------C--------CeeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI   74 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li   74 (301)
                      ...+|+++|+.++|||||+++|+|....... ....+.|...........              .        ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            4589999999999999999999976431111 111233443332211110              1        1678999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      ||||..           .+...+......+|++++|+|++++. .....+.+..+.. ++..   |+++++||+|+... 
T Consensus        87 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~~~-  150 (408)
T 1s0u_A           87 DSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLVDE-  150 (408)
T ss_dssp             ECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSSCT-
T ss_pred             ECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCCCH-
Confidence            999932           23334444456789999999999665 5666666665543 3432   79999999998754 


Q ss_pred             cccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                       ........+     +..++...   +.++++      .|+.++.++++|++.|...++.
T Consensus       151 -~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          151 -KQAEENYEQ-----IKEFVKGTIAENAPIIP------ISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             -TTTTTHHHH-----HHHHHTTSTTTTCCEEE------C------CHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHH-----HHHHHhhcCCCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence             221111111     33344322   234444      7888999999999999987653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=1.2e-15  Score=133.83  Aligned_cols=172  Identities=13%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc-----------------------eee---------------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVT-----------------------KTC---------------   58 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t-----------------------~~~---------------   58 (301)
                      .++|+|+|.+|+|||||+|+|+|....+.+..  ...++                       +..               
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            47899999999999999999999876433211  11111                       000               


Q ss_pred             ---------EeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccC-CCccEEEEEEecCCCCCHHHHHHHH
Q 022188           59 ---------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVH  126 (301)
Q Consensus        59 ---------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~  126 (301)
                               ........+...++||||||+......  ...+.+.+...+..++ ...+++++|++++..+...+..  .
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~--~  188 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--K  188 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH--H
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH--H
Confidence                     001111123467999999998763221  1111122222222222 3446677777877555555432  2


Q ss_pred             HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       127 ~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+.......  .|+++|+||+|..... ....+.+.. ..       ......++.   ....|++++.++.+|++.+..
T Consensus       189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~-~~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLEN-KL-------LPLRRGYIG---VVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTT-CS-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhC-Cc-------ccccCCceE---EEeCCcccccccccHHHHHHH
Confidence            333332222  3899999999987541 112222221 00       000111222   344788889999999988865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.66  E-value=3.1e-15  Score=128.60  Aligned_cols=169  Identities=17%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH-HHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~   96 (301)
                      ..+|+|+|.+|+|||||+|++++... +.+.  ..+.|...........++..+.+|||||....       ...+ ...
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~--~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~   73 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR--RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQ   73 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG--GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccc--CcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhH
Confidence            47899999999999999999988742 2211  23445544444433235678999999995431       1111 112


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++.++|++++|+|++++.+..+. .+..++..........|+++++||+|+...  ....+.... .......+...
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~v-~~~~~~~~~~~  150 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQI-MMKNLSETSSE  150 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHHH-HHHHHHHHHHH
Confidence            22335788999999999965544443 333444443211112399999999998753  122111000 00114455565


Q ss_pred             cC---CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 CD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 ~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .|   ..++.      +|+++ .++.+++..+..
T Consensus       151 ~g~~~~~~~~------tSa~~-~~i~e~~~~iv~  177 (307)
T 3r7w_A          151 FGFPNLIGFP------TSIWD-ESLYKAWSQIVC  177 (307)
T ss_dssp             TTCCSCEEEE------CCTTS-SHHHHHHHHHHH
T ss_pred             cCCCCeEEEE------eeecC-ChHHHHHHHHHH
Confidence            55   34454      67666 566666665544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.65  E-value=5.5e-16  Score=138.48  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=104.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc--C------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--A------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ....+|+++|++|+|||||+|+|++..       .+...  .      ...+.|.......+. ..+..+.+|||||..+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHH
Confidence            345899999999999999999998731       10000  0      011334433333333 4678899999999766


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      +       ...+..    .+..+|++|+|+|++++........+..+... +.    | +++++||+|+... ...++..
T Consensus        88 f-------~~~~~~----~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~-~~~~~~~  150 (405)
T 2c78_A           88 Y-------IKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDD-PELLDLV  150 (405)
T ss_dssp             G-------HHHHHH----HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCC-HHHHHHH
T ss_pred             H-------HHHHHH----HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCc-HHHHHHH
Confidence            3       122222    34567999999999877777777777766553 43    6 8899999998743 0222222


Q ss_pred             hcccCCchHHHHHHHcC-----CceEEecCCCcccccchhH------------------HHHHHHHHHHHHh
Q 022188          161 LGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV  209 (301)
Q Consensus       161 ~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------------~~~L~~~l~~~~~  209 (301)
                      ...     +..++...+     .++++      .|++++.+                  +.+|++.+...++
T Consensus       151 ~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          151 EME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            222     455555554     23444      67777766                  7778888777664

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.65  E-value=9.3e-16  Score=141.28  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------------------Cccc--cCCCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK------------------AFKA--SAGSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~------------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (301)
                      +.++|+|+||.++|||||..+|+-..                  +.+.  .....+.|.......+. |++..++|||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence            45899999999999999999996110                  0000  01122555555555555 899999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      |..|+..       ++.+++..+    |++|+|+|+..+...+....|+.+.+. +  +  |+++++||+|....
T Consensus       109 GHvDF~~-------Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~-~--l--p~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSE-------DTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR-A--T--PVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSH-------HHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSCCC
T ss_pred             CcHHHHH-------HHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh-C--C--ceEEEEecccchhc
Confidence            9999864       777888777    999999999999999999988887764 3  3  99999999998655

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.65  E-value=4.9e-15  Score=129.88  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+|+|++|+|||||+|+|+|.......  ..+.|.......+. .++..+.++||||+... .+... .+.+...+ .
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i~-~~g~~v~l~DT~G~i~~-lp~~l-ve~f~~tl-~  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAIP-INNRKIMLVDTVGFIRG-IPPQI-VDAFFVTL-S  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEE-ETTEEEEEEECCCBCSS-CCGGG-HHHHHHHH-H
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEEE-ECCEEEEEEeCCCchhc-CCHHH-HHHHHHHH-H
Confidence            45999999999999999999998752221  12223222222233 56788999999997542 12211 12222222 2


Q ss_pred             cCCCccEEEEEEecCCCC--CHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188          100 AKDGIHAFLVVFSVTNRF--SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .+..+|++++|+|++++.  ..... .+...+... +. ...|+++|+||+|....  . .......     +..+....
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l  323 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL  323 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence            356779999999998443  12222 233444443 21 12389999999998654  2 2211111     11222322


Q ss_pred             -CC--ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 -DN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 -~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                       ..  .++      ++|+.++.++++|++.|...+...
T Consensus       324 ~~~~~~~~------~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          324 YSPIFDVI------PISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CSCEEEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEE------EEECCCCcCHHHHHHHHHHHhccc
Confidence             11  233      378889999999999999887653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.65  E-value=4.1e-15  Score=120.65  Aligned_cols=174  Identities=13%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH--HHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~   94 (301)
                      ..+.+|+|+|++|+|||||+|+|+|...........+.+......  . .++ .+.++||||+.....+..  .......
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            356899999999999999999999876211111112222222221  1 223 678999999865322111  1111112


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ..+......++++++++|+..+.+..+.....++.. .+.    |++++.||+|....  ......+..     +..++.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~----~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~~  167 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNI----AVLVLLTKADKLAS--GARKAQLNM-----VREAVL  167 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEecccCCCc--hhHHHHHHH-----HHHHHH
Confidence            222222356799999999986666655445454433 232    88999999997654  221111222     334443


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+..+ .+   .++|+.++.+++++++.+.+....
T Consensus       168 ~~~~~~-~~---~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          168 AFNGDV-QV---ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGCSCE-EE---EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hcCCCC-ce---EEEeecCCCCHHHHHHHHHHHHhh
Confidence            333211 11   136778889999999999877644

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.65  E-value=1.8e-15  Score=136.16  Aligned_cols=167  Identities=15%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEe
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL   65 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~   65 (301)
                      +....++|+++|++|+|||||+|+|++.......                             ....+.|.......+. 
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-   91 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-   91 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe-
Confidence            3445689999999999999999999654211000                             0012455555555444 


Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCC-------HHHHHHHHHHHHhhCccccC
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD  138 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~  138 (301)
                      ..+..+.+|||||..+           +...+...+..+|++|+|+|++.+..       ...++.+..+.. ++.+   
T Consensus        92 ~~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~---  156 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVK---  156 (439)
T ss_pred             cCCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCC---
Confidence            5678999999999544           22233333456799999999986543       345555554443 3432   


Q ss_pred             eEEEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHH
Q 022188          139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (301)
Q Consensus       139 ~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  202 (301)
                      ++++++||+|+...  ....+++....     +..++..++.......+..+.||.++.++.++.+
T Consensus       157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            49999999998542  11223333333     4555555543200000112378888889888544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.64  E-value=4.1e-15  Score=132.40  Aligned_cols=163  Identities=18%  Similarity=0.217  Sum_probs=105.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC------ccc----cC----CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----SA----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~------~~~----~~----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      ..+|+++|++|+|||||+++|++...      +..    ..    ...+.|.......+. ..+..+.+|||||..+   
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~~---   78 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHAD---   78 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHH---
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChHH---
Confidence            47899999999999999999987411      000    00    012344444333332 4568899999999433   


Q ss_pred             CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHhcc
Q 022188           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                              +...+...+..+|++++|+|++++........+..+.. .+.    | +++++||+|+... ...++....+
T Consensus        79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~  144 (397)
T 1d2e_A           79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE  144 (397)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred             --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence                    33334445678899999999997777777777766654 343    6 7899999998743 0222222222


Q ss_pred             cCCchHHHHHHHcCC-----ceEEecCCCcccccchh---------H-HHHHHHHHHHHHhh
Q 022188          164 ECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ  210 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~-~~~L~~~l~~~~~~  210 (301)
                           +..++...+.     ++++      .||.++.         + +.+|++.+...++.
T Consensus       145 -----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          145 -----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             -----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             -----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                 4555655542     4444      6666544         4 88999998887653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=2.2e-15  Score=135.64  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC--cccc----------CCC-------------------CCcceeeEeEEEEe
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKAS----------AGS-------------------SGVTKTCEMKTTVL   65 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~--~~~~----------~~~-------------------~~~t~~~~~~~~~~   65 (301)
                      ...++|+++|++|+|||||+|+|++...  +...          ...                   .+.|.......+. 
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-  100 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-  100 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence            3457999999999999999999986531  0000          000                   1233333333333 


Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      ..+..+.+|||||..++       ...+..    .+..+|++++|+|++++........+..+.. ++..   |+++++|
T Consensus       101 ~~~~~~~iiDtpGh~~f-------~~~~~~----~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~---~iIvviN  165 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIK---HIVVAIN  165 (434)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCC---EEEEEEE
T ss_pred             cCCceEEEEECCChHHH-------HHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEE
Confidence            56778999999996552       122222    3457799999999997777777777666554 3432   6999999


Q ss_pred             CCCCCCCccccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHHH
Q 022188          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      |+|+...+...++.....     +..++...+     .++++      .|++++.++.+
T Consensus       166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~i~------vSA~~g~gi~~  213 (434)
T 1zun_B          166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAFVP------MSALKGDNVVN  213 (434)
T ss_dssp             CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEEEE------CCTTTCTTTSS
T ss_pred             cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceEEE------EeccCCCCccc
Confidence            999875311223333333     555666666     23333      67777777776

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.5e-15  Score=131.84  Aligned_cols=171  Identities=18%  Similarity=0.219  Sum_probs=84.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeeEeEEEE-eeCCe--eEEEEeCCCCCCCCC------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSA------   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~--~~~liDtPG~~~~~~------   84 (301)
                      ..+|+|+|++|+|||||+|+|++...+..+..+     ...|......... ..++.  .+++|||||+.+...      
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            368999999999999999999988766543211     1123222222211 12333  689999999966432      


Q ss_pred             -CcHHHHHHHHHHHhcc---------CCCccEEEEEEec-CCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           85 -GSEFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        85 -~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                       ....+...+..++...         ..++|+++|+++. ..++...+..+++.+.    ..+  |+++|+||+|.... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~~--piIlV~NK~Dl~~~-  189 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NKV--NIVPVIAKADTLTL-  189 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S-S--CEEEEEECCSSSCH-
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cCC--CEEEEEECCCCCCH-
Confidence             1122222332333221         2346789999986 4577777765555442    233  99999999998765 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhH---HHHHHHHHHHHH
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ---VRQLLSLVNSVI  208 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~  208 (301)
                       ..+..+...     +...+...+.+++.      .|++.+.+   +..++..+...+
T Consensus       190 -~ev~~~k~~-----i~~~~~~~~i~~~~------~Sa~~~~~~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 -KERERLKKR-----ILDEIEEHNIKIYH------LPDAESDEDEDFKEQTRLLKASI  235 (361)
T ss_dssp             -HHHHHHHHH-----HHHHTTCC-CCSCC------CC---------CHHHHHHHHHTC
T ss_pred             -HHHHHHHHH-----HHHHHHHCCCCEEe------CCCcCCCcchhHHHHHHHHHhcC
Confidence             444443333     44445444544444      44444444   334444444433

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.63  E-value=2.3e-15  Score=137.25  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc-cc----------------------------cCCCCCcceeeEeEEEEeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF-KA----------------------------SAGSSGVTKTCEMKTTVLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~-~~----------------------------~~~~~~~t~~~~~~~~~~~~~~   69 (301)
                      ..+|+++|++|+|||||+|+|++.... ..                            .....+.|.......+. ..+.
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~  111 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THRA  111 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCCc
Confidence            479999999999999999999755110 00                            00012445544444444 5678


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEEE
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                      .+.+|||||..++       ...+.    ..+..+|++|+|+|++.+       +.......+..+.. ++..   |+++
T Consensus       112 ~~~iiDTPG~~~f-------~~~~~----~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iIv  176 (483)
T 3p26_A          112 NFTIVDAPGHRDF-------VPNAI----MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLII  176 (483)
T ss_dssp             EEEEECCCCCGGG-------HHHHH----HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEEE
T ss_pred             eEEEEECCCcHHH-------HHHHH----HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEEE
Confidence            9999999997552       12222    334567999999999854       34455555555443 3432   7999


Q ss_pred             EEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188          143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       143 v~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ++||+|+.......+++....     +..++...+.     .+++      +||+++.|+.+
T Consensus       177 viNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------iSA~~g~gi~e  227 (483)
T 3p26_A          177 AMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYK  227 (483)
T ss_dssp             EEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEEE------CCSSSCTTSSS
T ss_pred             EEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------EeeecCCCccc
Confidence            999999875322334443333     5555555443     2333      67777777764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.63  E-value=2.2e-15  Score=119.83  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeeEe--EEEE----eeCCeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEM--KTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~----~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (301)
                      .+|+|+|++|+|||||+|++++.. .+...   ...|.....  ....    ......+.+|||||...           
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------   68 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE-----------   68 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHH-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCC---cceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------
Confidence            689999999999999999999863 22111   111221111  1111    01345789999999432           


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCH-H-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQ-E-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~-~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                      +......++.+.+++++|+|++++.+. . ...++..+..... +  .|+++|.||+|+...  ..+.+....    ...
T Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~  139 (184)
T 2zej_A           69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK  139 (184)
T ss_dssp             HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred             HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence            111111123456899999999854221 1 1334444443322 2  299999999997644  222211111    011


Q ss_pred             HHHHHcCCc----eEEecCCCcccccchh-HHHHHHHHHHHHHhh
Q 022188          171 EILQLCDNR----CVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (301)
Q Consensus       171 ~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~  210 (301)
                      .+....+..    ++.      +||+++. ++.+|++.+.+.+..
T Consensus       140 ~~~~~~~~~~~~~~~~------~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          140 ELLNKRGFPAIRDYHF------VNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HTTTCTTSCEEEEEEE------CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCcchhheEE------EecccCchhHHHHHHHHHHHHhc
Confidence            222223333    333      7888885 999999998877654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.62  E-value=3.6e-15  Score=131.15  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--cce---------------------------------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTK---------------------------------------   56 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~--~t~---------------------------------------   56 (301)
                      ...+|+|+|++|||||||+|+|+|...++.+.....  ++.                                       
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345899999999999999999999876555432110  000                                       


Q ss_pred             -----------eeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHH
Q 022188           57 -----------TCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET  123 (301)
Q Consensus        57 -----------~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~  123 (301)
                                 ......+.......+++|||||+......  .......+......++.++|++++|++... .......
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~~~  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLATSD  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGGCH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCCHH
Confidence                       00001111123457899999999875321  122333444555555678899999998752 1222223


Q ss_pred             HHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       124 ~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ++..+.......  .|+++|+||+|....
T Consensus       192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          192 AIKISREVDPSG--DRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred             HHHHHHHhcccC--CCEEEEEeCCccCCC
Confidence            344444432222  389999999998754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.62  E-value=4.9e-15  Score=137.30  Aligned_cols=163  Identities=20%  Similarity=0.210  Sum_probs=97.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc------------CCCCCcceeeEeEEEEee--C--CeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~   80 (301)
                      ..++|+|+|+.|+|||||+++|+.... ....            ....+.|.......+.+.  +  +..+++|||||..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            458999999999999999999975221 0000            001234444333333322  2  3578999999987


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      ++.       .++...+..+    |++++|+|++++.+......+..+... +  .  |+++++||+|+...   ..+..
T Consensus        83 dF~-------~ev~~~l~~a----D~aILVVDa~~gv~~qt~~~~~~~~~~-~--i--piIvViNKiDl~~a---~~~~v  143 (599)
T 3cb4_D           83 DFS-------YEVSRSLAAC----EGALLVVDAGQGVEAQTLANCYTAMEM-D--L--EVVPVLNKIDLPAA---DPERV  143 (599)
T ss_dssp             GGH-------HHHHHHHHHC----SEEEEEEETTTCCCTHHHHHHHHHHHT-T--C--EEEEEEECTTSTTC---CHHHH
T ss_pred             HHH-------HHHHHHHHHC----CEEEEEEECCCCCCHHHHHHHHHHHHC-C--C--CEEEeeeccCcccc---cHHHH
Confidence            742       2444455444    999999999978877776666555432 2  3  99999999998754   12222


Q ss_pred             hcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..        .+...++..   .......|++++.|+++|++.+...++.
T Consensus       144 ~~--------ei~~~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          144 AE--------EIEDIVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HH--------HHHHHTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HH--------HHHHHhCCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence            22        222333321   0112237899999999999999888764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.62  E-value=4.3e-15  Score=130.60  Aligned_cols=151  Identities=15%  Similarity=0.191  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|++++|||||+++|+          ..+.|.......+. +.+..+.+|||||..++       ...+...+   
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~~---   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITAL---   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHHH---
Confidence            89999999999999999998          11333333334333 56778999999998774       12333333   


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE-EEEEe-CCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                       ..+|++++|+| +.....+.++.+..+.. ++.    |. ++++| |+|+ ..  ..++....+     ++.++...+.
T Consensus        82 -~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~  146 (370)
T 2elf_A           82 -NISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL  146 (370)
T ss_dssp             -HTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred             -HHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence             45699999999 76777777777666654 344    55 88899 9997 43  333332233     4444443332


Q ss_pred             ceEEecCCCc--ccccc---hhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~--~~~~~---~~~~~~L~~~l~~~~~~  210 (301)
                      ..+++   .+  .||.+   +.++++|++.|...++.
T Consensus       147 ~~~~i---i~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          147 QDWEC---ISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTCEE---EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             CceEE---EecccccccCcCCCCHHHHHHHHHhhccc
Confidence            11111   13  57777   89999999988776643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.61  E-value=5.3e-15  Score=136.86  Aligned_cols=163  Identities=17%  Similarity=0.251  Sum_probs=99.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c-----------CCCCCcceeeEeEEEEee--CC--eeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~   80 (301)
                      ..++|+|+|+.|+|||||+++|++... +.. .           ....+.|.......+.+.  ++  ..+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            458999999999999999999975211 000 0           001233333333333221  22  578999999987


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      ++.       .++...+.    .+|++|+|+|++++.+......+..+... +  .  |+++++||+|+...   ..+..
T Consensus        85 dF~-------~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~a~~~-~--i--piIvviNKiDl~~a---~~~~v  145 (600)
T 2ywe_A           85 DFS-------YEVSRALA----ACEGALLLIDASQGIEAQTVANFWKAVEQ-D--L--VIIPVINKIDLPSA---DVDRV  145 (600)
T ss_dssp             GGH-------HHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHHHHHT-T--C--EEEEEEECTTSTTC---CHHHH
T ss_pred             hHH-------HHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHHHHHC-C--C--CEEEEEeccCcccc---CHHHH
Confidence            742       24444444    45999999999988887777666555432 2  3  89999999998654   12222


Q ss_pred             hcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..        .+...++..   .......||+++.|+++|++.+...++.
T Consensus       146 ~~--------el~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          146 KK--------QIEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HH--------HHHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HH--------HHHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence            22        222333321   0112338999999999999999888764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.61  E-value=6.6e-15  Score=127.86  Aligned_cols=165  Identities=17%  Similarity=0.086  Sum_probs=102.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCee--EEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+++|.+|+|||||++++++......    ...|+..........++..  +.+|||||.....           ..
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~  219 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------RL  219 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCS----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------TT
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcc----cCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------HH
Confidence            47899999999999999999996654221    1223222222222345554  4599999965532           22


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-CchH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKPL  169 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~l  169 (301)
                      ...++..+|++++|+|++++.+....  .++..+....+ .  .|+++|+||+|+...  ....+.+..    .. ....
T Consensus       220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~  294 (332)
T 2wkq_A          220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG  294 (332)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred             HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-C--CcEEEEEEchhcccc--cchhhhccccccccccHHHH
Confidence            23356788999999999854433332  34555555433 2  399999999997643  111111110    00 0112


Q ss_pred             HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+....+. .++.      +|++++.+++++++.+...+.
T Consensus       295 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          295 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence            344445554 5555      788899999999999987653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.61  E-value=4.5e-15  Score=138.42  Aligned_cols=157  Identities=16%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CC---------------CCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AG---------------SSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~---------------~~~~t~~~~~~~~~~~~   67 (301)
                      ....+|+|+|++|+|||||+|+|++.......              ..               ..+.|.......+. ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence            34589999999999999999999976331100              00               02445444444444 56


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      +..+.||||||+.+           +...+...+..+|++|+|+|++.+       ........+..+.. ++..   |+
T Consensus       244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~i  308 (611)
T 3izq_1          244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NL  308 (611)
T ss_dssp             SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---EE
T ss_pred             CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---eE
Confidence            78999999999755           344445567789999999999832       23444454444443 3432   69


Q ss_pred             EEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHHH
Q 022188          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQL  200 (301)
Q Consensus       141 ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L  200 (301)
                      ++++||+|+.......+++....     +..++..++.     .+++      +||.++.|+.++
T Consensus       309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~i~------vSA~tG~gI~el  362 (611)
T 3izq_1          309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEEEE------CCTTTCTTTSSC
T ss_pred             EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccEEe------eecccCCCcccc
Confidence            99999999875321333433333     5555555543     3444      777778887754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.61  E-value=3.1e-14  Score=134.92  Aligned_cols=206  Identities=18%  Similarity=0.214  Sum_probs=114.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC-ccc-cCC--------------CCCcceeeEeEEEEeeCC-------eeEEE
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA-SAG--------------SSGVTKTCEMKTTVLKDG-------QVVNV   73 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~-~~~-~~~--------------~~~~t~~~~~~~~~~~~~-------~~~~l   73 (301)
                      ...++|+|+|+.|+|||||+++|+.... +.. +..              ..+.|.......+. +.+       ..++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEE
Confidence            3568999999999999999999964311 000 000              12344444444433 444       78999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      |||||..++.       .+...++.    .+|++|+|+|++.+........+..+... +  .  |+++++||+|.... 
T Consensus        87 iDTPG~~df~-------~~~~~~l~----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~--i--p~ilviNKiD~~~~-  149 (704)
T 2rdo_7           87 IDTPGHVDFT-------IEVERSMR----VLDGAVMVYCAVGGVQPQSETVWRQANKY-K--V--PRIAFVNKMDRMGA-  149 (704)
T ss_pred             EeCCCccchH-------HHHHHHHH----HCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEeCCCcccc-
Confidence            9999987742       23344443    45999999999977776666666655432 2  2  89999999997654 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh-cCCC-----CCchHHHHHHHHH
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ-NGGQ-----PYTDELKRGATEL  227 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~-----~~~~~~~~~~~~~  227 (301)
                        .+.+.+.        .+...++....++..+.... ....++-+++..-...... ..+.     ..+.++.+.+.+.
T Consensus       150 --~~~~~~~--------~l~~~l~~~~~~~~~Pi~~~-~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  218 (704)
T 2rdo_7          150 --NFLKVVN--------QIKTRLGANPVPLQLAIGAE-EHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW  218 (704)
T ss_pred             --cHHHHHH--------HHHHHhCCCceeEEcccccc-ccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHH
Confidence              2333333        33344454444444322211 1122333333322111111 0011     1334444444443


Q ss_pred             HHhHHHHHHHHHHhHHHHHHHHHHHH
Q 022188          228 RDKKAEVDSLKEYSKREISKLMGQMQ  253 (301)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (301)
                        +.+.++.+.+.+++.++++.+..+
T Consensus       219 --~~~l~e~~ae~dd~l~e~~l~~~~  242 (704)
T 2rdo_7          219 --HQNLIESAAEASEELMEKYLGGEE  242 (704)
T ss_pred             --HHHHHHHHHhcCHHHHHHHhcCCC
Confidence              344456666777777777766443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.40  E-value=4.8e-17  Score=131.61  Aligned_cols=165  Identities=16%  Similarity=0.063  Sum_probs=94.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      ....+|+|+|.+|+|||||++++++.......    ..|+..........++  ..+.+|||||.....           
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------   92 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------   92 (204)
Confidence            34589999999999999999999876542211    1111111111111223  356699999965421           


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-----CCc
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK  167 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~  167 (301)
                      .....++..+|++++|+|++++.+....  .++..+....+   ..|+++|+||+|+...  ....+.+...     ...
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 3th5_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
Confidence            2222345677999999999854433332  45555554332   2399999999998644  2111111100     000


Q ss_pred             hHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       168 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ....+....+. ++      ..+||+++.+++++++.+.+.
T Consensus       168 ~~~~~~~~~~~~~~------~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          168 QGLAMAKEIGAVKY------LECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            01122222222 22      347899999999999987653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.61  E-value=2e-17  Score=151.08  Aligned_cols=161  Identities=14%  Similarity=0.179  Sum_probs=105.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+|+|++|+|||||+|+|++......  ...+.|.....+.....++..+++|||||..++...           ..
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~   70 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA   70 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence            46799999999999999999997654222  223444444333333235668999999997664321           22


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH---HHH
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI---LQL  175 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~---~~~  175 (301)
                      ..+..+|++++|+|++++........+..+... +  .  |+++++||+|+.......+...        +...   ...
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-~--v--PiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~  137 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-H--V--PIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED  137 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-T--C--CEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-C--C--cEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence            345678999999999988888887777766643 3  3  8999999999764311111111        1111   011


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ++.. ++   ..+.||+++.++++|++.+...+.
T Consensus       138 ~~~~-~~---iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          138 YGGD-VQ---AVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             SSSS-EE---ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             cCCC-ce---EEEEECCCCCCchhHHHHHHHhhh
Confidence            1111 11   234789999999999999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.60  E-value=5.9e-15  Score=136.90  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------eCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~   81 (301)
                      .++|+|+|++|+|||||+++|++.......  +.+.|..........                 .....+++|||||..+
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            378999999999999999999976442111  112222221111110                 0112589999999877


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      +....           ...+..+|++++|+|+++++.......+..+... +  .  |+++++||+|+..
T Consensus        83 F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~--v--PiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY-R--T--PFVVAANKIDRIH  136 (594)
T ss_dssp             CTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGST
T ss_pred             HHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C--C--eEEEEeccccccc
Confidence            64321           1235668999999999988888888777776653 3  2  9999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.60  E-value=8.8e-15  Score=117.19  Aligned_cols=162  Identities=20%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ..+|+|+|.+|+|||||+|+++|... +.....+.+.+...  ..+. .++.  .+.+|||+|......        .  
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~Dt~~~~~~~~--------~--   72 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLM-VDGESATIILLDMWENKGENE--------W--   72 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEE-ETTEEEEEEEECCCCC----C--------T--
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEE-ECCeEEEEEEEEeccCcchhh--------h--
Confidence            47899999999999999999996432 22211111222111  1122 4554  457899999544100        0  


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+........++         ...+..
T Consensus        73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~  142 (192)
T 2cjw_A           73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV  142 (192)
T ss_dssp             TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence            01112344699999999985433333 2344444443211 123899999999975321011111         112223


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..+..++.      +||+++.++++++..+...+.
T Consensus       143 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          143 VFDXKFIE------TSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             HTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred             HhCCceEE------eccccCCCHHHHHHHHHHHHH
Confidence            34445554      899999999999999877653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.59  E-value=5.5e-15  Score=118.20  Aligned_cols=130  Identities=9%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|++|+|||||+|+|++......... ...++.      ....+..+.+|||||........       ..+
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~------~~~~~~~~~l~Dt~G~~~~~~~~-------~~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA------ADYDGSGVTLVDFPGHVKLRYKL-------SDY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCH-------HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCcee------eeecCCeEEEEECCCCchHHHHH-------HHH
Confidence            3458999999999999999999998764221111 111111      11245678999999987654321       222


Q ss_pred             HhccCCCccEEEEEEecC-CCCCHHH-HHHHHHHHHhhC--ccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188           97 LGMAKDGIHAFLVVFSVT-NRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~  162 (301)
                      +......+|++++|+|++ ++-+... ..++..+.....  .....|+++|+||+|+...  ..+.+...
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~  179 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD  179 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence            222224569999999997 2211111 122222222111  0012399999999998766  44544443

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.58  E-value=1.6e-14  Score=130.11  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=92.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------c---------------CCCCCcceeeEeEEEEeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (301)
                      +.++|+++|+.|+|||||+++|++.. .+..             +               ....+.|.......+. +.+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence            45899999999999999999998541 1110             0               0012344444444333 567


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEE
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      ..+.+|||||..++           ...+..++..+|++++|+|+++.       +....+..+..+.. ++..   |++
T Consensus        84 ~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~ii  148 (435)
T 1jny_A           84 YFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLI  148 (435)
T ss_dssp             CEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCE
T ss_pred             eEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eEE
Confidence            88999999997762           22233456788999999999854       33344554444443 3432   689


Q ss_pred             EEEeCCCCCCCc--cccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHH
Q 022188          142 VVFTGGDDLEDH--EKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVR  198 (301)
Q Consensus       142 lv~nk~D~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  198 (301)
                      +++||+|+...+  ...++.....     +..++...+     ..+++      .|+.++.++.
T Consensus       149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~  201 (435)
T 1jny_A          149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT  201 (435)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred             EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence            999999987521  1223333343     566666655     23444      6667777765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.58  E-value=1.6e-14  Score=116.21  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|||||||+++|+|........  ...+.......+. .++.  .+.+|||||........          
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~----------   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRIT----------   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCCC----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhhh----------
Confidence            4789999999999999999999876422211  1111122122222 4554  56789999965432111          


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ...+..++++++|+|+....+... ..++..+......  ..|+++++||+|+.........+         .+.+...
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~  139 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK  139 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence             112356799999999984333322 2334444333222  23899999999975331111111         2344444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +|+.++.++.++++.+...+.
T Consensus       140 ~~~~~~d------~Sal~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          140 NNLSFIE------TSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             TTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            4443333      677888999999999887654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.58  E-value=2.7e-15  Score=122.52  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ....+|+|+|++|+|||||+|+|++........ ....++..      ......+.+|||||.....       ..+..+
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~~-------~~~~~~   75 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKLR-------YKLSDY   75 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET------TGGGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE------EeeCceEEEEECCCcHHHH-------HHHHHH
Confidence            345899999999999999999999876422211 11122111      1245678999999986532       122233


Q ss_pred             HhccCCCccEEEEEEecC-C--CCCHHHHHHHHHHHHh---hCccccCeEEEEEeCCCCCCC
Q 022188           97 LGMAKDGIHAFLVVFSVT-N--RFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~--~~~~~~~~~l~~l~~~---~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +......+|++++|+|++ +  .+......+...+...   ....  .|+++|+||+|+...
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence            322223469999999998 3  3333333332332221   1122  399999999998766

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.57  E-value=1.4e-16  Score=144.31  Aligned_cols=159  Identities=14%  Similarity=0.186  Sum_probs=100.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+++|++|+|||||+++|++.......  ..+.|.....+.+. +++..+++|||||..++...           .
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~-----------~   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSM-----------R   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTS-----------B
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHH-----------H
Confidence            3478999999999999999999865432111  12334333333333 56778999999998775431           1


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ...+..+|++++|+|++++........+..+... +.    |+++++||+|+...+...+...+.. ..    .+...++
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~v----PiIVviNKiDl~~~~~~~v~~~l~~-~~----~~~~~~~  138 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-QV----PVVVAVNKIDKPEADPDRVKNELSQ-YG----ILPEEWG  138 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-TC----CEEEEEECSSSSTTCCCCTTCCCCC-CC----CCTTCCS
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-Cc----eEEEEEEeccccccCHHHHHHHHHH-hh----hhHHHhC
Confidence            2335677999999999876666666666655442 33    8999999999864311122111111 00    0001111


Q ss_pred             --CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                        .++++      .||+++.++++|++++..
T Consensus       139 ~~~~~v~------vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          139 GESQFVH------VSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             SSCEEEE------CCTTTCTTCTTHHHHTTT
T ss_pred             CCccEEE------EeeeeccCcchhhhhhhh
Confidence              23343      788999999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.57  E-value=3e-15  Score=141.73  Aligned_cols=119  Identities=25%  Similarity=0.351  Sum_probs=80.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----c--CC-------CCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S--AG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g---~~~~~~----~--~~-------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (301)
                      ...++|+|+|++|+|||||+|+|++   ......    +  ..       ..+.|.......+. +.+..++||||||+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCc
Confidence            3568999999999999999999984   211000    0  00       11233333333333 678899999999998


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ++..       +...++..    +|++|+|+|+..+.+......+..+... +.    |+++++||+|....
T Consensus        87 df~~-------~~~~~l~~----aD~~llVvDa~~g~~~~~~~~~~~~~~~-~~----p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTV-------EVERSLRV----LDGAVTVLDAQSGVEPQTETVWRQATTY-GV----PRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCH-------HHHHHHHH----CSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred             chHH-------HHHHHHHH----CCEEEEEECCCCCCcHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence            7532       34444443    4999999999978888887777766553 32    89999999998754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=6.2e-14  Score=124.60  Aligned_cols=169  Identities=19%  Similarity=0.271  Sum_probs=83.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc---HH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---EF   88 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~---~~   88 (301)
                      .+.|+|+|++|+|||||+|+|+|...+..+...    ...|.......+.. ..+  ..+++|||||+.......   ..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            468999999999999999999998763332110    11222211111111 112  368999999997642111   11


Q ss_pred             HH----HHHHHHH-------hccC--CCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188           89 VG----KEIVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE  154 (301)
Q Consensus        89 ~~----~~~~~~~-------~~~~--~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~  154 (301)
                      +.    ..+..++       ...+  +.+|++||++.++ ..+...+..+++.+..    .+  |+++|+||+|....  
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~v--~iIlVinK~Dll~~--  182 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KV--NIIPLIAKADTLTP--  182 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----TS--EEEEEEESTTSSCH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----cC--cEEEEEEcccCccH--
Confidence            11    1111111       1122  3456788888775 5788888766666542    22  89999999998765  


Q ss_pred             ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ..+..+...     +...+...+.+++.+      |+.++.++.+++..+..
T Consensus       183 ~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          183 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHH-----HHHHHHHHTCCCCCC------C----------------
T ss_pred             HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHh
Confidence            555555444     555666666655543      33344555555554444

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.56  E-value=8.8e-14  Score=135.11  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=103.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      .+..+|+++|++|+|||||+++|++...      +.    .    .....+.|.......+. ..+..+.+|||||..+ 
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHed-  371 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHAD-  371 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHHH-
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChHH-
Confidence            3458999999999999999999986410      00    0    00112334333222223 4667899999999443 


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                                +...+...+..+|++|+|+|++++........+..+.. .+.    | +++++||+|+.... ..++...
T Consensus       372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d~-e~le~i~  435 (1289)
T 3avx_A          372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDDE-ELLELVE  435 (1289)
T ss_dssp             ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCCH-HHHHHHH
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccch-hhHHHHH
Confidence                      33334445678899999999997777777777766654 343    6 78999999987530 1222222


Q ss_pred             cccCCchHHHHHHHcC-----CceEEecCCCcccccch--------hHHHHHHHHHHHHHh
Q 022188          162 GHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV  209 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~L~~~l~~~~~  209 (301)
                      .+     +..++...+     .++++      .|+.++        .++.+|++.+...++
T Consensus       436 eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          436 ME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence            22     455565554     24454      566665        578889988877654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.55  E-value=1.3e-14  Score=137.34  Aligned_cols=120  Identities=22%  Similarity=0.283  Sum_probs=79.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC---CCCc----ccc--C-------CCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILG---RKAF----KAS--A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g---~~~~----~~~--~-------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (301)
                      ....++|+|+|++|+|||||+++|+.   ....    ..+  .       ...+.|.......+. +.+..+++|||||.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~   87 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGH   87 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCc
Confidence            34568999999999999999999982   2100    000  0       012344444444333 67889999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .++.       .+...++..    +|++|+|+|++.+.+......+..+... +.    |+++++||+|....
T Consensus        88 ~df~-------~~~~~~l~~----aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~  144 (691)
T 1dar_A           88 VDFT-------IEVERSMRV----LDGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA  144 (691)
T ss_dssp             TTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred             cchH-------HHHHHHHHH----CCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCcccC
Confidence            7742       234444444    4999999999988888877777766543 32    89999999998754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.55  E-value=1.9e-14  Score=130.19  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------cCC---------------CCCcceeeEeEEEEeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------SAG---------------SSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~   68 (301)
                      ...+|+++|++|+|||||+|+|++.. .+..             +..               ..+.|.......+. ..+
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence            34799999999999999999998641 1100             000               12344444444333 567


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCH-------HHHHHHHHHHHhhCccccCeEE
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI  141 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i  141 (301)
                      ..+.+|||||..+           +...+...+..+|++|+|+|++++...       .....+..+.. .+.+   +++
T Consensus        85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLI  149 (458)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEE
Confidence            8899999999654           233344456788999999999843222       33444443332 3432   599


Q ss_pred             EEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHH
Q 022188          142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVR  198 (301)
Q Consensus       142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  198 (301)
                      +++||+|+...+...++.....     +..++...+     .++++      .||..+.++.
T Consensus       150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~  200 (458)
T 1f60_A          150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI  200 (458)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred             EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence            9999999873211333444443     555555555     24554      5666666654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.55  E-value=2.4e-15  Score=141.21  Aligned_cols=117  Identities=21%  Similarity=0.287  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCCcc----ccCC---------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK----ASAG---------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~---g~~~~~----~~~~---------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      .++|+|+||.++|||||..+|+   |...-.    .+..         ..+.|.......+. |++..++||||||..|+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence            5789999999999999999985   221100    0000         01455555555544 78899999999999997


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .       .++...+..+    |++|+|+|+..+...+.+..|+.+.+. +.    |.++++||+|....
T Consensus        81 ~-------~Ev~raL~~~----DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a  134 (638)
T 3j25_A           81 L-------AEVYRSLSVL----DGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI  134 (638)
T ss_dssp             H-------HHHHHHHTTC----SEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred             H-------HHHHHHHHHh----CEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence            4       3677777665    999999999989999998888887765 33    88999999998755

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.54  E-value=1e-13  Score=110.80  Aligned_cols=159  Identities=18%  Similarity=0.164  Sum_probs=93.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCee--EEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|++|||||||+++++|.......  ....+.......+. .++..  +.+|||||........          
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~----------   95 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAIT----------   95 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCCC----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhhh----------
Confidence            478999999999999999999987653221  11222222222222 45654  4579999976543211          


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ...+..++++++|+|..+..+... ..++..+......  ..|+++++||+|+..........         .+.+...
T Consensus        96 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~  163 (191)
T 1oix_A           96 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK  163 (191)
T ss_dssp             -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             -HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence             112345689999999873322222 2233334332221  23899999999975321011111         2344444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+..++.      +|+.++.++.++++.+.+.+
T Consensus       164 ~~~~~ld------~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          164 NGLSFIE------TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence            4433333      67788899999999887643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.53  E-value=1.4e-14  Score=132.88  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--cC------------------CCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--SA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (301)
                      ..++|+|+|++|+|||||+++|++......  +.                  ...+.|.......+. +.+..+.|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEECC
Confidence            458999999999999999999985321100  00                  011222222223333 678899999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      |..++.       .....+    +..+|++|+|+|++.+........+..+... +  .  |+++++||+|....
T Consensus        91 G~~df~-------~~~~~~----l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-~--i--piivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFS-------EDTYRT----LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-D--T--PILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-T--C--CEEEEEECTTSCCS
T ss_pred             CChhHH-------HHHHHH----HHHCCEEEEEEeCCccchHHHHHHHHHHHHc-C--C--CEEEEEcCcCCccc
Confidence            987753       123333    4566999999999977777666666655432 2  2  89999999998655

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.53  E-value=4.6e-14  Score=130.45  Aligned_cols=163  Identities=13%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE----EEE---eeCCeeEEEEeCCCCCCCCCCcHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK----TTV---LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~----~~~---~~~~~~~~liDtPG~~~~~~~~~~~~   90 (301)
                      ...+|+|+|.+|||||||+|++++...........+.+......    ...   ...+..+.+|||||.........   
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~---  116 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ---  116 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH---
Confidence            45899999999999999999999876422111111111111000    000   01256899999999655433221   


Q ss_pred             HHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (301)
                          .+    +..+|++++|+|+++ . .....++..+....+ +  .|+++|.||+|.........++         +.
T Consensus       117 ----~~----l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~---------~~  174 (535)
T 3dpu_A          117 ----FF----MTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK---------IN  174 (535)
T ss_dssp             ----HH----HHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH---------HH
T ss_pred             ----HH----ccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH---------HH
Confidence                11    234699999999983 2 333556666766533 2  3999999999986541111111         33


Q ss_pred             HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ......+.+++.      +||+++.|+++|+..+...+...
T Consensus       175 ~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          175 ERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTCT
T ss_pred             HHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhcc
Confidence            344445556666      88899999999999999887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.52  E-value=1.6e-14  Score=133.17  Aligned_cols=138  Identities=20%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--------------------------------
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------------------   64 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--------------------------------   64 (301)
                      ....+|+|+|.+|+|||||+|+|+|........+..+.|+........                                
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            356899999999999999999999987631112222222221110000                                


Q ss_pred             ----eeCC---eeEEEEeCCCCCCCCCCcHHHHHH--HHHHHhccCCCccEEEEEEecCC-CCCHHHHHHHHHHHHhhCc
Q 022188           65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK  134 (301)
Q Consensus        65 ----~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~  134 (301)
                          .+..   ..+.||||||+.+....  .+.+.  +......+...+|++++|+|++. .+...+..++..+...   
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence                0000   36899999999863210  00000  11222222345699999999984 4666667776666542   


Q ss_pred             cccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188          135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus       135 ~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                      .  .|+++|+||+|....  ..+...+..
T Consensus       218 ~--~pvilVlNK~Dl~~~--~el~~~~~~  242 (550)
T 2qpt_A          218 E--DKIRVVLNKADMVET--QQLMRVYGA  242 (550)
T ss_dssp             G--GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred             C--CCEEEEEECCCccCH--HHHHHHHHH
Confidence            2  289999999998765  555554443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.52  E-value=3.2e-14  Score=126.09  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEE--EE------------------eeC---CeeEEEEeC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV------------------LKD---GQVVNVIDT   76 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~---~~~~~liDt   76 (301)
                      .+|+|+|.+|+|||||+|+|++... ... ..++.|.......  +.                  .++   ...+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~-~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-ccc-CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            3799999999999999999998763 111 1111222211111  00                  012   246899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC
Q 022188           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR  116 (301)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~  116 (301)
                      ||+.......    +.+...+...++.+|++++|+|+.++
T Consensus        79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9986532111    11222223456889999999999843

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.51  E-value=6.3e-14  Score=122.56  Aligned_cols=122  Identities=15%  Similarity=0.205  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.||+|||||+|+|+|.....  ...++.|... ......+.+..+.++||||+............++...+.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~-~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVT-VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCE-EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeee-eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3689999999999999999999976422  2223344444 344445789999999999998653333334455555554


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhCcc-ccCeEEEEEeCCCCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKN-VFDYMIVVFTGGDDL  150 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~-~l~~~~~~~-~~~~~ilv~nk~D~~  150 (301)
                      .    +|++++|+|++++..  +...+. .|.. ++.. ..+|.++++||.|..
T Consensus       149 ~----ad~il~vvD~~~p~~--~~~~i~~EL~~-~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          149 T----CNLLFIILDVNKPLH--HKQIIEKELEG-VGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             H----CSEEEEEEETTSHHH--HHHHHHHHHHH-TTEEETCCCCCEEEEECSSS
T ss_pred             h----cCccccccccCccHH--HHHHHHHHHHH-hhHhhccCChhhhhhHhhhh
Confidence            4    499999999985432  222222 2322 2322 234888999999964

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.51  E-value=1.4e-13  Score=122.32  Aligned_cols=168  Identities=15%  Similarity=0.103  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..|+|+|++|||||||+|+|++.......  ....|.......+. +++ ..++++||||+.........+...+...  
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~-~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--  232 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRH--  232 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEE-ecCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence            35899999999999999999987642211  11222222222222 343 7889999999865311100011122222  


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                        ...++.+++++|++ +-...+ ....+.+......-...|.++++||+|....      +.+..     +...+...+
T Consensus       233 --~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~~~-----l~~~l~~~g  298 (416)
T 1udx_A          233 --IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAVKA-----LADALAREG  298 (416)
T ss_dssp             --HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHHHH-----HHHHHHTTT
T ss_pred             --HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHHHH-----HHHHHHhcC
Confidence              24569999999996 222222 1222222222100012389999999996532      12222     333333334


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~  212 (301)
                      ..++.      +||.++.++++|++.+...+....
T Consensus       299 ~~vi~------iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          299 LAVLP------VSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             SCEEE------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             CeEEE------EECCCccCHHHHHHHHHHHHHhcc
Confidence            45555      788889999999999999887543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.51  E-value=7e-16  Score=143.47  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeeEeEEEEeeC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD   67 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~   67 (301)
                      ...++|+|+|++|+|||||+|+|++......              +               ....+.|.......+. ..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-SD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-eC
Confidence            3457899999999999999999964311000              0               0012334444433333 45


Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-----C--CHHHHHHHHHHHHhhCccccCeE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      +..+.||||||..++..           .+...+..+|++|+|+|++.+     +  .......+..+.. ++.+   ++
T Consensus       254 ~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i  318 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI  318 (592)
T ss_dssp             -----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred             CeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence            67899999999876421           112234567999999999843     3  5556666555544 3442   48


Q ss_pred             EEEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcCC-----ceEEecCCCcccccchhHHH--------------HH
Q 022188          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN-----RCVLFDNKTKDEAKGTEQVR--------------QL  200 (301)
Q Consensus       141 ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~--------------~L  200 (301)
                      ++++||+|+.......+......     +..++ ...+.     .+++      +||+++.|+.              .|
T Consensus       319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~ii~------iSA~~G~gI~e~~~~~~~~w~~g~~L  387 (592)
T 3mca_A          319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHFVP------ISAISGTNLIQKDSSDLYKWYKGPTL  387 (592)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEEEE------ECSSSCSSSCSCCCCGGGGTCCSCCH
T ss_pred             EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEEEE------EecccCcccccccccccccccchHHH
Confidence            99999999865311334444443     55555 44443     2444      6777788876              68


Q ss_pred             HHHHHHHHh
Q 022188          201 LSLVNSVIV  209 (301)
Q Consensus       201 ~~~l~~~~~  209 (301)
                      ++.|...++
T Consensus       388 le~l~~~~p  396 (592)
T 3mca_A          388 LSALDQLVP  396 (592)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhhcc
Confidence            887766544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.51  E-value=3.7e-13  Score=117.31  Aligned_cols=107  Identities=11%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHH-HhhCccccCeEEEEE
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVF  144 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~ilv~  144 (301)
                      +.+..+.+|||||+.++.       ..   .    ...+|++++|+|++....      +..+. ...+    .|.++|+
T Consensus       146 ~~~~~i~liDTpG~~~~~-------~~---~----~~~aD~vl~Vvd~~~~~~------~~~l~~~~~~----~p~ivv~  201 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSE-------TE---V----ARMVDCFISLQIAGGGDD------LQGIKKGLME----VADLIVI  201 (341)
T ss_dssp             HTTCSEEEEEEECCTTHH-------HH---H----HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEE
T ss_pred             ccCCCEEEEeCCCccchH-------HH---H----HHhCCEEEEEEeCCccHH------HHHHHHhhhc----ccCEEEE
Confidence            346789999999987621       11   1    256799999999872211      11111 1111    2889999


Q ss_pred             eCCCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ||+|....  ..+...+..     ++..+...+       ..+++      +|++++.|+++|+++|...+.
T Consensus       202 NK~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          202 NKDDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLT------CSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEE------CBGGGTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence            99997643  233332222     333222222       23333      788899999999999988765

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.51  E-value=2.1e-13  Score=119.47  Aligned_cols=108  Identities=16%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .+..+.||||||+...          ....    ...+|++++|+|+...-..      ..+....   ...|+++|+||
T Consensus       170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence            4678999999997651          1111    2566999999998722111      1111110   11289999999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHc-------CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +|....  .........     +...+...       +.++++      +|++++.|+++|+++|...++.
T Consensus       227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLT------MSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEE------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEE------EEcCCCCCHHHHHHHHHHHHHH
Confidence            997644  333333332     33333222       234554      8999999999999999988765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.51  E-value=2.6e-13  Score=128.01  Aligned_cols=116  Identities=27%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      ...+|+|+|++|+|||||+++|++....  ..+..              ..+.|...+...+. +.+..+++|||||..+
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccc
Confidence            4689999999999999999999843321  00100              01234444444433 6778899999999766


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      +       ..++..++..    +|++++|+|+..++......++..+... +.    |+++++||+|..
T Consensus        87 f-------~~~~~~~l~~----ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~  139 (665)
T 2dy1_A           87 F-------VGEIRGALEA----ADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG  139 (665)
T ss_dssp             G-------HHHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred             h-------HHHHHHHHhh----cCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence            3       1234444444    4999999999888888888777777653 33    899999999976

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=115.59  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             CccEEEEEEecCCC--CCHHH-HHHHHHHHHhh-CccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-cC
Q 022188          103 GIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CD  177 (301)
Q Consensus       103 ~~~~il~v~~~~~~--~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  177 (301)
                      ++|++++|+|++++  .+-.. ..++..+.... ...  .|+++|.||+|+...  ..++    .     ...+... .+
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~  228 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN  228 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence            58999999999855  45444 34444444431 112  399999999997543  2221    1     2333332 24


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..++.      +||+++.+++++++++...+
T Consensus       229 ~~~~e------~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          229 LQVVE------TSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             CCEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEE------EECCCCCCHHHHHHHHHHHh
Confidence            44554      78899999999999987654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.49  E-value=3.1e-13  Score=115.62  Aligned_cols=171  Identities=16%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCC----CCCcceeeEeEEEEe-eC--CeeEEEEeCCCCCCCCCC---cH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAG----SSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAG---SE   87 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~----~~~~t~~~~~~~~~~-~~--~~~~~liDtPG~~~~~~~---~~   87 (301)
                      ..+|+|+|++|+|||||+|+|+|...++ ++..    ....+.......+.. ..  ...+++|||||+.+....   ..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            4789999999999999999999874332 2210    001121111111111 11  347899999999542110   01


Q ss_pred             HHHH----HHHHHHhcc---------CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           88 FVGK----EIVKCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        88 ~~~~----~~~~~~~~~---------~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      .+..    .+...+...         ...+++++|+++.+ ..+...+...++.+.    ...  |+++|+||.|.... 
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~~--~iilV~~K~Dl~~~-  170 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NKV--NIVPVIAKADTLTL-  170 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TTS--CEEEEECCGGGSCH-
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hcC--CEEEEEEeCCCCCH-
Confidence            1111    111222111         12346677777764 358777754443332    222  89999999997654 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                       ..+..+...     ....+...+..++.      .|++++ ++++++..+...+.
T Consensus       171 -~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          171 -KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             -HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHH
T ss_pred             -HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhh
Confidence             333333333     45555555554444      677778 89998888776654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.49  E-value=7.7e-14  Score=126.54  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-cc-------------cc---------------CCCCCcceeeEeEEEEeeCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FK-------------AS---------------AGSSGVTKTCEMKTTVLKDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~~   68 (301)
                      ..++|+++|+.++|||||+++|++... +.             .+               ....+.|.......+. .++
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~~  120 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TEH  120 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CSS
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cCC
Confidence            357999999999999999999974211 00             00               0012344444433333 567


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCe-E
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY-M  140 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~-~  140 (301)
                      ..+.+|||||..++           ...+...+..+|++|+|+|++++.       ....+..+..+.. .+.    | +
T Consensus       121 ~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~i  184 (467)
T 1r5b_A          121 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NHL  184 (467)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SSE
T ss_pred             eEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CEE
Confidence            89999999997653           222233456789999999998542       1233444444332 343    5 9


Q ss_pred             EEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHc-CC------ceEEecCCCcccccchhHHHHHH
Q 022188          141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN------RCVLFDNKTKDEAKGTEQVRQLL  201 (301)
Q Consensus       141 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~L~  201 (301)
                      ++++||+|+...  +...++....+     +..++... +.      .+++      .|+.++.++.+++
T Consensus       185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~i~------vSA~~g~~i~~l~  243 (467)
T 1r5b_A          185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDRV  243 (467)
T ss_dssp             EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSCC
T ss_pred             EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceEEe------ccccccccccccc
Confidence            999999998542  11223333333     44555444 32      2343      6777777776544

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.48  E-value=1.2e-13  Score=131.34  Aligned_cols=123  Identities=28%  Similarity=0.317  Sum_probs=87.5

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC--------------ccc--cCCCCCcceeeEeEEEEee------CCeeE
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKA--------------FKA--SAGSSGVTKTCEMKTTVLK------DGQVV   71 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~--------------~~~--~~~~~~~t~~~~~~~~~~~------~~~~~   71 (301)
                      +|.++.++|+|+||.++|||||..+|+-..-              .+.  .....+.|.......+.+.      ++..+
T Consensus         8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i   87 (709)
T 4fn5_A            8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV   87 (709)
T ss_dssp             SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred             CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence            3445679999999999999999999862110              000  0112245555555555522      24689


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (301)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~  151 (301)
                      +||||||..|+.       .++..++..+    |++|+|+|+..+...+.+..|+...+.   .+  |.++++||+|...
T Consensus        88 NlIDTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~  151 (709)
T 4fn5_A           88 NVIDTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQG  151 (709)
T ss_dssp             EEECCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTT
T ss_pred             EEEeCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccC
Confidence            999999999974       3778888777    999999999999999999888887665   33  8999999999865


Q ss_pred             C
Q 022188          152 D  152 (301)
Q Consensus       152 ~  152 (301)
                      .
T Consensus       152 a  152 (709)
T 4fn5_A          152 A  152 (709)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.46  E-value=7.6e-13  Score=115.54  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .+..+.++||||+...   ..    .+       ...+|++++|+|++.+.   +...+..  ..+.    .|.++++||
T Consensus       165 ~~~~~iliDT~Gi~~~---~~----~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVGQS---EF----AV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC--C---HH----HH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred             CCCCEEEEECCCcchh---hh----hH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence            5668899999998652   10    11       24669999999987332   1111110  1222    278999999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHH-------cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQL-------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +|....  .........     +...+..       ...++++      +|+.++.|+++|+++|...+..
T Consensus       222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~------iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIR------ISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence            997633  221111111     1111111       1123333      7888999999999999887653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.44  E-value=3.4e-13  Score=113.46  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----CcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCc---HH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF   88 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~---~~   88 (301)
                      .+++|+|++|+|||||+|+|+|...+.+|....     ..+.......+....   ...++++|+||++......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            689999999999999999999977654442111     111111111111111   2367999999997643211   11


Q ss_pred             HH----HHHHHHHhc----------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           89 VG----KEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        89 ~~----~~~~~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      +.    ..+...+..          ....+++.++++|.. .+++..+...++.+.+.      .++++|+||+|.... 
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~-  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL-  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence            11    122222211          112358888999865 78999998877777653      289999999998876 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEec
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFD  184 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  184 (301)
                       ..+..+...     ++..+...+..++.+.
T Consensus       156 -~e~~~~k~~-----i~~~l~~~~i~i~~~~  180 (270)
T 3sop_A          156 -EEKSEFKQR-----VRKELEVNGIEFYPQK  180 (270)
T ss_dssp             -HHHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred             -HHHHHHHHH-----HHHHHHHcCccccCCC
Confidence             666666665     6666666676666543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.43  E-value=9.8e-13  Score=116.47  Aligned_cols=134  Identities=19%  Similarity=0.274  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCCc---H----
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS---E----   87 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~---~----   87 (301)
                      ++++|+|++|+|||||+|+|+|.........  ..+.+..  ...+.....   ..++++|+||++......   .    
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3499999999999999999999864221111  1122221  111221221   268999999998642110   0    


Q ss_pred             HHHHHHHHHHhcc---------CC--CccE-EEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188           88 FVGKEIVKCLGMA---------KD--GIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK  155 (301)
Q Consensus        88 ~~~~~~~~~~~~~---------~~--~~~~-il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~  155 (301)
                      .+...+..++...         .+  .+|+ +++++|+..+++..+..+++.|.    ...  |+++|+||+|.+..  .
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~Lt~--~  192 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADAISK--S  192 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGGSCH--H
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhccch--H
Confidence            1222222322221         11  2344 55566777788888877776664    123  99999999998876  5


Q ss_pred             cHHHHhcc
Q 022188          156 TLEDFLGH  163 (301)
Q Consensus       156 ~~~~~~~~  163 (301)
                      .+..+...
T Consensus       193 E~~~l~~~  200 (427)
T 2qag_B          193 ELTKFKIK  200 (427)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.39  E-value=3.8e-12  Score=108.76  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      +|+++|..|+||||+++.+.+... +......++|.......+  .....+.+|||||...+..+.      +  ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence            489999999999999999886543 221112233333322222  234678999999987753211      0  01224


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHh--hCccccCeEEEEEeCCCCCCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +++++++++|+|+++++...-..+..++...  ...++  |++++.||+|+...
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence            6788999999999966333323332333321  12233  99999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.32  E-value=6.3e-12  Score=109.97  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe--------------------eCCeeEEEEeCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KDGQVVNVIDTPGL   79 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~~liDtPG~   79 (301)
                      .+|+|+|.+|+|||||+|+|++... ... .....|..........                    ..+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~-~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA-LAA-NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT-TCS-SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-ccc-CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            4699999999999999999998642 111 1111122211111110                    12357899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (301)
                      .........+...+...+    +.+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            765322222333444443    45599999999973

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.31  E-value=4.6e-12  Score=110.19  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDL   82 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~   82 (301)
                      .+|+|+|.+|+|||||+|+|++.......  .++.|.......+. +.+                 ..+.+|||||+...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~--~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            67999999999999999999987631111  11122222111112 222                 46899999998763


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (301)
                      ......+...+...    ++.+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence            21001111122222    356699999999973

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.30  E-value=6.1e-12  Score=121.54  Aligned_cols=117  Identities=22%  Similarity=0.327  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeeEeEEEEee---------------CC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~   68 (301)
                      ..++|+|+|+.|+|||||+++|++........              ...+.|.......+.+.               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            45799999999999999999998642110000              01122333222222211               15


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..++||||||..++..       +...++.    .+|++|+|+|+.++.+......+..+...   ..  |+++++||+|
T Consensus        98 ~~i~liDTPG~~df~~-------~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~~--p~ilviNK~D  161 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSS-------EVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE---RI--KPVVVINKVD  161 (842)
T ss_dssp             EEEEEECCCCCCSSCH-------HHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--EEEEEEECHH
T ss_pred             ceEEEEECcCchhhHH-------HHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHHc---CC--CeEEEEECCC
Confidence            6789999999988642       3444443    45999999999988888877666554432   22  8999999999


Q ss_pred             CC
Q 022188          149 DL  150 (301)
Q Consensus       149 ~~  150 (301)
                      +.
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.23  E-value=1.5e-10  Score=96.87  Aligned_cols=178  Identities=15%  Similarity=0.025  Sum_probs=92.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-----CCCCccccCCCCCc--------------ceeeEeE-EE-------------
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT-------------   63 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~-----g~~~~~~~~~~~~~--------------t~~~~~~-~~-------------   63 (301)
                      .....++++|+.|+||||+++.|+     |..+......+...              +...... ..             
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            345788999999999999999998     66543222111100              0000000 00             


Q ss_pred             ------------EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHH-HHHHHHH
Q 022188           64 ------------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPN  130 (301)
Q Consensus        64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~  130 (301)
                                  ....+..+.+|||||..+...     ...+...+...+.. +++++++|+....+..+.. .+.....
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-----~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~  165 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL-----FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL  165 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-----HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-----hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence                        000123789999999754210     00111111122345 8999999987444444322 1111111


Q ss_pred             hhCccccCeEEEEEeCCCCCCCccccH---HHHhcccCCchHHH-----------------HHHHcCC--ceEEecCCCc
Q 022188          131 LFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHECPKPLKE-----------------ILQLCDN--RCVLFDNKTK  188 (301)
Q Consensus       131 ~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~~~~~l~~-----------------~~~~~~~--~~~~~~~~~~  188 (301)
                      ... ....|+++|+||+|....  ..+   .+++.. .......                 ++...+.  ++++      
T Consensus       166 ~~~-~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------  235 (262)
T 1yrb_A          166 IDL-RLGATTIPALNKVDLLSE--EEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY------  235 (262)
T ss_dssp             HHH-HHTSCEEEEECCGGGCCH--HHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEE------
T ss_pred             Hhc-ccCCCeEEEEeccccccc--ccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCcccceE------
Confidence            000 112389999999997644  222   232221 0000001                 1122221  3444      


Q ss_pred             ccccchhHHHHHHHHHHHHHhh
Q 022188          189 DEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       189 ~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .|++++.++++|++++...++.
T Consensus       236 ~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          236 LSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEecCcccHHHHHHHHHHHhcc
Confidence            7888999999999999888765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.19  E-value=1.7e-12  Score=114.09  Aligned_cols=129  Identities=17%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFK----ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~----~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      .+|+++|.+|+|||||+|+|++.....    ...+. .+.|......  . . +..+.++||||+.+.......+..+..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~-~-~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--P-L-DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--E-S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--E-e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            679999999999999999999864221    11122 2333333222  2 1 223899999999886532222222222


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~  160 (301)
                      ..+. ....++.++|+++....+.......+..+.   +..  .|+++++||.|....  ..++..
T Consensus       237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~  294 (368)
T 3h2y_A          237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKA  294 (368)
T ss_dssp             HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHH
T ss_pred             HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHH
Confidence            2221 235778899999884111111211222222   112  289999999998765  444443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.18  E-value=3.2e-11  Score=104.65  Aligned_cols=107  Identities=14%  Similarity=0.068  Sum_probs=59.5

Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .+..+.+|||||+...   ..    .+       ...+|.+++++++...-   +.   +.+..... .  .+.++++||
T Consensus       146 ~~~~~iliDT~Gi~~~---~~----~v-------~~~~d~vl~v~d~~~~~---~~---~~i~~~i~-~--~~~ivvlNK  202 (337)
T 2qm8_A          146 AGFDVILVETVGVGQS---ET----AV-------ADLTDFFLVLMLPGAGD---EL---QGIKKGIF-E--LADMIAVNK  202 (337)
T ss_dssp             TTCCEEEEEECSSSSC---HH----HH-------HTTSSEEEEEECSCC------------CCTTHH-H--HCSEEEEEC
T ss_pred             CCCCEEEEECCCCCcc---hh----hH-------HhhCCEEEEEEcCCCcc---cH---HHHHHHHh-c--cccEEEEEc
Confidence            5778999999998863   11    11       24669999999876221   11   11111000 1  156778899


Q ss_pred             CCCCCCccccH-HHHhcccCCchHHHHHHHc-------CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          147 GDDLEDHEKTL-EDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       147 ~D~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +|....  ... ......     +...+...       ..++++      .|+.++.++++|++.|.....
T Consensus       203 ~Dl~~~--~~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~------~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          203 ADDGDG--ERRASAAASE-----YRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CSTTCC--HHHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhccCc--hhHHHHHHHH-----HHHHHHhccccccCCCCCEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            996533  111 111111     22112111       123343      788889999999999988765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.15  E-value=1.8e-12  Score=113.96  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ..+|+++|.+|+|||||+|+|++.     .....+ ...+.|......  .  -+..+.++||||+.+.......+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~--~--~~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEI--P--LESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEE--E--CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEE--E--eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999986     222122 122334433222  1  233489999999987643222222222


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...+. ....++.++|++++...+.......+..+.   +...  |+++++||.|....
T Consensus       237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~~--~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGRR--SFVCYMANELTVHR  289 (369)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSSE--EEEEEECTTSCEEE
T ss_pred             HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCCc--eEEEEecCCccccc
Confidence            22221 135789999999985111111211222222   2222  89999999998754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.13  E-value=4e-10  Score=105.30  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCccee----------eEe----------------------------
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT----------CEM----------------------------   60 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~----------~~~----------------------------   60 (301)
                      ..|+|+|++|||||||+++|+|...+ .+|........-          ...                            
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            34999999999999999999998643 233322211110          000                            


Q ss_pred             -------------EEEEeeCCeeEEEEeCCCCCCC--CCCcHHHHHHHHHHHhccCCC-ccEEEEEEecCCCCCHHHHHH
Q 022188           61 -------------KTTVLKDGQVVNVIDTPGLFDL--SAGSEFVGKEIVKCLGMAKDG-IHAFLVVFSVTNRFSQEEETA  124 (301)
Q Consensus        61 -------------~~~~~~~~~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~~~~  124 (301)
                                   ..........+.++|.||+...  .+.+......+...+..+... ...++.++.++..+...  ..
T Consensus       126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~  203 (608)
T 3szr_A          126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EA  203 (608)
T ss_dssp             HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HH
T ss_pred             cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HH
Confidence                         0000112346899999998763  333334445555555554333 35556666655233222  23


Q ss_pred             HHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          125 VHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       125 l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ++.+...-...  .++++|+||+|....
T Consensus       204 l~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          204 LSMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHHhhcC--CceEEEecchhhcCc
Confidence            34444432222  279999999998865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.12  E-value=2.7e-10  Score=103.32  Aligned_cols=122  Identities=15%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCcce-----------eeEeEEEE----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVTK-----------TCEMKTTV----------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~~----------------   64 (301)
                      +..+|+|+|++|+||||+++.|+      |..+.-..........           ....+...                
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999      7654222111100000           00011100                


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVV  143 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv  143 (301)
                      .+.+..++||||||....   +..+..++......  ..+|.+++|+|+.....  .......+.+.    .  | ..+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gvV  246 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASVI  246 (504)
T ss_dssp             HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCEE
T ss_pred             HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEEE
Confidence            025678999999998763   23334444333221  26799999999985433  22333333332    1  5 4899


Q ss_pred             EeCCCCCCC
Q 022188          144 FTGGDDLED  152 (301)
Q Consensus       144 ~nk~D~~~~  152 (301)
                      +||+|....
T Consensus       247 lNK~D~~~~  255 (504)
T 2j37_W          247 VTKLDGHAK  255 (504)
T ss_dssp             EECTTSCCC
T ss_pred             EeCCccccc
Confidence            999997643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.11  E-value=1.8e-09  Score=95.70  Aligned_cols=169  Identities=19%  Similarity=0.165  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc--ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV--TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+|++|||||||+|+|+|......+....+.  ++.. .+.+.......++++|+||+......    ..++...+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~  144 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM  144 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence            58999999999999999999997765555332221  1111 11111112236899999998753211    12233332


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC--CC-----ccccHHHHhcccCCchHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL--ED-----HEKTLEDFLGHECPKPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~--~~-----~~~~~~~~~~~~~~~~l~  170 (301)
                      ..  ...+.+++ ++.. +.......+.+.+... +.    |+++|+|+.|..  ++     +.....+....     ++
T Consensus       145 ~L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l~  210 (413)
T 1tq4_A          145 KF--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-KK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----IR  210 (413)
T ss_dssp             TG--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-TC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----HH
T ss_pred             CC--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-CC----CeEEEEecCcccccCcccccCCHHHHHHHHHH-----HH
Confidence            21  22244444 6665 4555555555555542 33    899999998854  11     00122222222     33


Q ss_pred             HHH----HHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          171 EIL----QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       171 ~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+.    ...   ...++++....    ..+.++++|.+.+...++..
T Consensus       211 ~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          211 LNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCccc
Confidence            332    122   23456644432    23357999999999888763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.11  E-value=1.1e-10  Score=95.16  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=83.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc--ccc--CCCCCcce--------eeEeEEEE-----------------eeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF--KAS--AGSSGVTK--------TCEMKTTV-----------------LKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~--~~~--~~~~~~t~--------~~~~~~~~-----------------~~~~~   69 (301)
                      .++|+|+|++|+|||||++.|++....  ...  ....+.+.        ........                 ...+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            478999999999999999999864210  000  00001000        00000000                 12345


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~  149 (301)
                      .+.+|||||.....  .            ......+.+++|+|+......    .+... ...+.    |.++++||+|.
T Consensus       110 d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~~----~~iiv~NK~Dl  166 (221)
T 2wsm_A          110 DLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFRV----ADLIVINKVAL  166 (221)
T ss_dssp             SEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHHT----CSEEEEECGGG
T ss_pred             CEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhhc----CCEEEEecccC
Confidence            67788888852210  0            011245788999998743221    11111 11222    89999999997


Q ss_pred             CCCccccHHHHhcccCCchHHHHHHHc--CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          150 LEDHEKTLEDFLGHECPKPLKEILQLC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .......+++...         .+...  +.+++.      .|++++.++++|++++...+..
T Consensus       167 ~~~~~~~~~~~~~---------~~~~~~~~~~i~~------~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          167 AEAVGADVEKMKA---------DAKLINPRAKIIE------MDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHTCCHHHHHH---------HHHHHCTTSEEEE------CBTTTTBTHHHHHHHHHHHHC-
T ss_pred             CcchhhHHHHHHH---------HHHHhCCCCeEEE------eecCCCCCHHHHHHHHHHHHHH
Confidence            5320012322222         22222  234444      7888899999999999876643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.06  E-value=4e-10  Score=103.89  Aligned_cols=107  Identities=20%  Similarity=0.206  Sum_probs=62.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEE--eeCCeeEEEEeCCCCCCCCC-CcHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSA-GSEFVGKEI   93 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~~~   93 (301)
                      +..+|+|+|.+|+|||||+|+|+|... +..+....+.|.....+...  ...+..+.|+||||+.+... ........+
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f  116 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  116 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence            457899999999999999999999875 22222222333322221111  12567899999999987543 221111111


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN  130 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~  130 (301)
                      .-....+    +  ++|+++...++..+...+..+.+
T Consensus       117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence            1111112    2  45566666788888776665544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.05  E-value=2.4e-10  Score=100.34  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-----------------CeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~   80 (301)
                      ...+|+|+|.+|+|||||+|+|+|... ... ..+..|.......+. +.                 ...+.+|||||+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~-v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVP-VPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEE-ECCccceeeccccCcccccccccEEEECCCcc
Confidence            357899999999999999999999764 111 111222222221111 11                 2358999999988


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ........+...+...    ++.+|++++|+|+.
T Consensus        98 ~~as~~~glg~~~l~~----ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSH----ISACDGIFHLTRAF  127 (396)
T ss_dssp             ---------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred             cccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence            6432222222233333    35669999999987

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.03  E-value=5.3e-10  Score=98.39  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGL   79 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~   79 (301)
                      ..+.+|+|+|++|||||||+|+|+|........ .++.|.......+. +.+                 ..+.+|||||+
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecccc
Confidence            346799999999999999999999966412211 11222222221122 232                 36799999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      .......+.+...+...    ...+|++++|+++.
T Consensus        96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF  126 (392)
T ss_dssp             CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred             ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence            76443322222333333    34679999999987

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.97  E-value=1.2e-09  Score=92.41  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (301)
                      ...+|+++|.+|+|||||+|+|+|.....++.. .+.|...+..  .  .+..+.++||||+..+...+..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV--K--VGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCHH
Confidence            457899999999999999999999876444432 2334433322  1  2457899999999987655544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.88  E-value=3e-08  Score=86.55  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=43.8

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+|||+|...           .......++.+++++|+|+|+++.-        ...-...+.++.......  
T Consensus       198 ~~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          198 IKNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eCCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            4567899999999533           2233455678999999999998410        111122333333332211  


Q ss_pred             ccCeEEEEEeCCCCC
Q 022188          136 VFDYMIVVFTGGDDL  150 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~  150 (301)
                      ...|++|++||.|+.
T Consensus       267 ~~~piILv~NK~DL~  281 (362)
T 1zcb_A          267 SNVSIILFLNKTDLL  281 (362)
T ss_dssp             TTSEEEEEEECHHHH
T ss_pred             CCCCEEEEEEChhhh
Confidence            123999999999975

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.79  E-value=1.2e-07  Score=82.54  Aligned_cols=129  Identities=12%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+|||+|...           .......++.+++++|+|+|+++.-        ...-.....++...+...  
T Consensus       190 ~~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          190 FKDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             ETTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eCCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            4677899999999443           2233445789999999999998421        111223334444433311  


Q ss_pred             ccCeEEEEEeCCCCCCCc--cccHHHHhcccCC-----chHHHHHH----Hc-----CCceEEecCCCcccccchhHHHH
Q 022188          136 VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP-----KPLKEILQ----LC-----DNRCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~~~-----~~l~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ...|++|++||.|+....  ...+..+... +.     .....++.    ..     ...+..+    .+||.++.++.+
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~-~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~  333 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPE-YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQF  333 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTT-CCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccc-cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHH
Confidence            123999999999974210  0001111000 00     00111221    11     1111111    278889999999


Q ss_pred             HHHHHHHHHhh
Q 022188          200 LLSLVNSVIVQ  210 (301)
Q Consensus       200 L~~~l~~~~~~  210 (301)
                      ++.++...+..
T Consensus       334 vF~~v~~~i~~  344 (353)
T 1cip_A          334 VFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999876643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.78  E-value=1.3e-07  Score=84.28  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCcc-----------eeeEeEEEE----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVT-----------KTCEMKTTV----------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~t-----------~~~~~~~~~----------------   64 (301)
                      ++..|+++|++|+||||++..|+      |..+.-....+....           .....+...                
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999987      443321111000000           000000000                


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      ...+..+.||||||....   +.....++.....  ...+|.+++|+|+...  .........+.+..     ....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence            013467899999997663   3344444444332  2357999999999832  22233334444332     2577999


Q ss_pred             eCCCCCCC
Q 022188          145 TGGDDLED  152 (301)
Q Consensus       145 nk~D~~~~  152 (301)
                      ||+|....
T Consensus       247 TKlD~~~~  254 (443)
T 3dm5_A          247 TKLDGSAK  254 (443)
T ss_dssp             ECCSSCSS
T ss_pred             ECCCCccc
Confidence            99997644

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.78  E-value=2e-08  Score=81.85  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|+|+|.+|+|||||++.+++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=7.1e-09  Score=86.62  Aligned_cols=64  Identities=27%  Similarity=0.422  Sum_probs=41.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC-CcHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA-GSEF   88 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~-~~~~   88 (301)
                      .+++++|.+|+|||||+|+|+|.....++.. .+.|...+..    ..+..+.+|||||+.+... .+..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~~  164 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF----SLENGVKILDTPGILYKNIFSEDL  164 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCCCSHHH
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE----EeCCCEEEEECCCcccCcCCCChh
Confidence            5899999999999999999999876444322 2334333221    2245789999999998765 4443

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.70  E-value=6.6e-07  Score=76.76  Aligned_cols=129  Identities=13%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-------CCCC-HHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFS-QEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+|||.|-           +........++.+++++|+|++++       +.-+ ..-...+.++.+.+...  
T Consensus       164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            56788999999992           223344456789999999999764       1111 11123334444443321  


Q ss_pred             ccCeEEEEEeCCCCCCC--ccccHHHHhcccCCc---h---HHHHH----HH---cC-CceEEecCCCcccccchhHHHH
Q 022188          136 VFDYMIVVFTGGDDLED--HEKTLEDFLGHECPK---P---LKEIL----QL---CD-NRCVLFDNKTKDEAKGTEQVRQ  199 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~---~---l~~~~----~~---~~-~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ...|+++++||+|+...  ....+..+... +..   .   ...++    ..   .. ..++.+    .++|.+..+++.
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~-y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~nV~~  307 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPE-YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRF  307 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTT-CCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchh-ccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCHHHHH
Confidence            12399999999997532  00112222211 100   0   11111    10   11 112211    267888899999


Q ss_pred             HHHHHHHHHhh
Q 022188          200 LLSLVNSVIVQ  210 (301)
Q Consensus       200 L~~~l~~~~~~  210 (301)
                      ++..+.+.+..
T Consensus       308 vF~~v~~~Il~  318 (327)
T 3ohm_A          308 VFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.69  E-value=1.5e-07  Score=81.01  Aligned_cols=75  Identities=11%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--------CCCHHHHHHHHHHHHhhCcc--
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--------RFSQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--------~~~~~~~~~l~~l~~~~~~~--  135 (301)
                      .++..+.+|||+|-           +........++.+++++|+|+|++.        .-...-...+.++...+...  
T Consensus       158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            46678999999992           2344445567899999999999971        01111122333333332211  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 022188          136 VFDYMIVVFTGGDDLE  151 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~~  151 (301)
                      ...|++|++||+|+..
T Consensus       227 ~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             TTSEEEEEEECHHHHH
T ss_pred             CCCeEEEEEECchhhh
Confidence            1239999999999653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.60  E-value=1.2e-07  Score=84.46  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCC---------------CcceeeEeE----------EE--E
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS---------------GVTKTCEMK----------TT--V   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~---------------~~t~~~~~~----------~~--~   64 (301)
                      ++..|+++|++|+||||++..|.      |..+.-......               +........          ..  .
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45789999999999999999987      333211110000               000000000          00  0


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                      ...+..+.+|||||..... .+.....++.......  .++.+++|+|+...  .......+.+.+.++     +..+|+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence            0125678899999975411 1223334454443322  46899999999732  222334444544332     578999


Q ss_pred             eCCCCCCC
Q 022188          145 TGGDDLED  152 (301)
Q Consensus       145 nk~D~~~~  152 (301)
                      ||+|....
T Consensus       246 TKlD~~a~  253 (433)
T 3kl4_A          246 TKMDGTAK  253 (433)
T ss_dssp             ECGGGCSC
T ss_pred             eccccccc
Confidence            99997633

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.59  E-value=2.5e-07  Score=83.22  Aligned_cols=123  Identities=13%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---CCcc--------------eeeEeEEEE----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT--------------KTCEMKTTV----------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~---~~~t--------------~~~~~~~~~----------------   64 (301)
                      .+..|+|+|++|+|||||++.|.|......+...   ....              ....+....                
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            4578999999999999999999875322221100   0000              000010000                


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcc-CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---GMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      ...+..+.++||+|....   ......++....   ... ...++-+++++|+..+  ......++.+.+.++     ..
T Consensus       372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----it  441 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LT  441 (503)
T ss_dssp             HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CS
T ss_pred             HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----CC
Confidence            012456889999998653   223333333322   212 2347888999998722  222344455555444     35


Q ss_pred             EEEEeCCCCC
Q 022188          141 IVVFTGGDDL  150 (301)
Q Consensus       141 ilv~nk~D~~  150 (301)
                      .+|+||+|..
T Consensus       442 gvIlTKLD~t  451 (503)
T 2yhs_A          442 GITLTKLDGT  451 (503)
T ss_dssp             EEEEECGGGC
T ss_pred             EEEEEcCCCc
Confidence            6899999964

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.56  E-value=8.3e-08  Score=85.73  Aligned_cols=122  Identities=14%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC------CccccCCC----------------------CCcceeeE--e--EEEEee
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK------AFKASAGS----------------------SGVTKTCE--M--KTTVLK   66 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~------~~~~~~~~----------------------~~~t~~~~--~--~~~~~~   66 (301)
                      ...|+|+|++|+||||+++.|.+..      +.-....+                      .+.+....  .  ......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997631      11000000                      00010000  0  000112


Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .+..+.+|||||....   +.....++.. + .....+|.+++|+|+..+.  ......+.+....    .....+|+||
T Consensus       179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~~~~~~~~~~~~~----~~i~gvVlnK  247 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--QAGIQAKAFKEAV----GEIGSIIVTK  247 (432)
T ss_dssp             SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--GHHHHHHHHHTTS----CSCEEEEEEC
T ss_pred             hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--HHHHHHHHHhhcc----cCCeEEEEeC
Confidence            4567899999997752   3333333322 1 1234789999999987332  1122222222111    0148899999


Q ss_pred             CCCCC
Q 022188          147 GDDLE  151 (301)
Q Consensus       147 ~D~~~  151 (301)
                      +|...
T Consensus       248 ~D~~~  252 (432)
T 2v3c_C          248 LDGSA  252 (432)
T ss_dssp             SSSCS
T ss_pred             CCCcc
Confidence            99753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.55  E-value=1.5e-06  Score=74.75  Aligned_cols=122  Identities=14%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CC-Cc--------ceeeE--eEEEE---------------
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SS-GV--------TKTCE--MKTTV---------------   64 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~-~~--------t~~~~--~~~~~---------------   64 (301)
                      .++..|+|+|++||||||+++.|+|......+..      .. ..        .....  .....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            3567899999999999999999987543221100      00 00        00000  00000               


Q ss_pred             -eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                       ...+..+.++||+|.......   ...++.......  .+|..++++|+..+  ......++.+.+..+     ...++
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred             HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence             001345678999998653322   223333222211  36888999998733  222333444443332     46899


Q ss_pred             EeCCCCC
Q 022188          144 FTGGDDL  150 (301)
Q Consensus       144 ~nk~D~~  150 (301)
                      +||.|..
T Consensus       275 lTKlD~~  281 (328)
T 3e70_C          275 LTKLDAD  281 (328)
T ss_dssp             EECGGGC
T ss_pred             EeCcCCc
Confidence            9999964

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.55  E-value=1.9e-06  Score=73.38  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCC-c----------ceeeEeEEEE----------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSG-V----------TKTCEMKTTV----------------   64 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~-~----------t~~~~~~~~~----------------   64 (301)
                      ++..|+|+|++||||||+++.|.|......+.      .... .          ..........                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998643322110      0000 0          0000010000                


Q ss_pred             eeCCeeEEEEeCCCCCCCCCCcHHHHHHH---HHHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEI---VKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                      ...+..+.++||+|.....   .....++   ...+. .....|+.+++++|+..+.  .....+..+.+..+     ..
T Consensus       181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t  250 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LT  250 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CS
T ss_pred             HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----Cc
Confidence            0113456799999986532   1212222   22222 2245788888899987332  23334444444333     37


Q ss_pred             EEEEeCCCCC
Q 022188          141 IVVFTGGDDL  150 (301)
Q Consensus       141 ilv~nk~D~~  150 (301)
                      ++++||.|..
T Consensus       251 ~iivTh~d~~  260 (304)
T 1rj9_A          251 GVIVTKLDGT  260 (304)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEECCccc
Confidence            7899999865

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.53  E-value=2.1e-07  Score=83.06  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=56.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC-----------------CCccccCCCCCcceeeEeEE----EEeeC--CeeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKT----TVLKD--GQVVNVI   74 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~li   74 (301)
                      +...|+|+|++++|||||+|.|+|.                 ..|..+.+....|.-.-...    ....+  ...+.++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll  145 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence            3468999999999999999999864                 22322222222222111100    00012  2468999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHH-HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188           75 DTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN  130 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~  130 (301)
                      ||||+++.... ......+.. ++..+    +.+||-+  ...+...+...|..+.+
T Consensus       146 DTeG~~~~~~~-~~~d~~ifal~~lLS----s~~IyN~--~~~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          146 DTQGTFDSQST-LRDSATVFALSTMIS----SIQVYNL--SQNVQEDDLQHLQLFTE  195 (447)
T ss_dssp             EEECCCSSHHH-HHHHHHHHHHHHHHC----SEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred             cCCcccccccc-hhhhHHHHHHHHHHh----hHHHHhh--cccccHHHHHHHHHHHH
Confidence            99999885321 111111211 11112    4444444  34677777776666555

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.48  E-value=1.3e-06  Score=75.95  Aligned_cols=70  Identities=10%  Similarity=0.088  Sum_probs=42.9

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC----------CCCCHHHHHHHHHHHHhhCcc--
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN--  135 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~~~~~~~~l~~l~~~~~~~--  135 (301)
                      ...+.+|||+|-..           +......++++++++|+|+|++          +.-+  -.....++.+.....  
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s--~~~~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR--MMETKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH--HHHHHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH--HHHHHHHHHHHHhcccc
Confidence            35789999999544           2223345689999999999986          1211  122333333332211  


Q ss_pred             ccCeEEEEEeCCCCC
Q 022188          136 VFDYMIVVFTGGDDL  150 (301)
Q Consensus       136 ~~~~~ilv~nk~D~~  150 (301)
                      ...|++|+.||+|+.
T Consensus       249 ~~~piiLvgNK~DL~  263 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIF  263 (354)
T ss_dssp             SSCEEEEEEECHHHH
T ss_pred             CCCeEEEEEECcchh
Confidence            123999999999964

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.34  E-value=4.1e-06  Score=71.31  Aligned_cols=123  Identities=16%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCc-------c----eeeEeEEEEe---------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGV-------T----KTCEMKTTVL---------------   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~~---------------   65 (301)
                      ++..++|+|++||||||+++.|+|......+.      .....       .    ..........               
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~  178 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  178 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence            45789999999999999999998754322221      00000       0    0011110000               


Q ss_pred             --eCCeeEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188           66 --KDGQVVNVIDTPGLFDLSAGSEFVGKEIV---KCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (301)
Q Consensus        66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (301)
                        ..+....++||.|.....   .....++.   ..+. .....|+-+++++|++..+....  .++.+.+..+     .
T Consensus       179 ~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----~  248 (302)
T 3b9q_A          179 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I  248 (302)
T ss_dssp             HHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred             HHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----C
Confidence              012345789999986532   22222222   1222 22456887788888654443332  2334433333     3


Q ss_pred             EEEEEeCCCCC
Q 022188          140 MIVVFTGGDDL  150 (301)
Q Consensus       140 ~ilv~nk~D~~  150 (301)
                      .++++||.|..
T Consensus       249 t~iiiThlD~~  259 (302)
T 3b9q_A          249 TGLILTKLDGS  259 (302)
T ss_dssp             CEEEEECCSSC
T ss_pred             CEEEEeCCCCC
Confidence            67889998865

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=1.4e-07  Score=80.23  Aligned_cols=59  Identities=31%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      +..++|+|++|+|||||+|+|+|.....++....      ..|.....  .. ..  ...++||||+..+
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~-~~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IH-TS--GGLVADTPGFSSL  237 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EE-ET--TEEEESSCSCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hh-cC--CEEEecCCCcccc
Confidence            4689999999999999999999987655553321      12222111  11 11  3479999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.31  E-value=1.4e-05  Score=68.08  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+..|+|+|++|+||||++..|.+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHH
Confidence            4578999999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.30  E-value=5.4e-06  Score=72.04  Aligned_cols=123  Identities=16%  Similarity=0.264  Sum_probs=66.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCc-------c----eeeEeEEEEe---------------
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGV-------T----KTCEMKTTVL---------------   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~~---------------   65 (301)
                      ++..|+|+|++||||||+++.|+|......+.      .....       .    ..........               
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~  235 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  235 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence            45789999999999999999998754322211      00000       0    0011110000               


Q ss_pred             --eCCeeEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188           66 --KDGQVVNVIDTPGLFDLSAGSEFVGKEIV---KCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (301)
Q Consensus        66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (301)
                        ..+....++||.|.....   .....++.   ..+. .....|+-+++++|++..+....  .+..+.+..+     .
T Consensus       236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~  305 (359)
T 2og2_A          236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I  305 (359)
T ss_dssp             HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred             HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----C
Confidence              012345789999987532   22222222   1121 23467887888888654443332  2333433333     3


Q ss_pred             EEEEEeCCCCC
Q 022188          140 MIVVFTGGDDL  150 (301)
Q Consensus       140 ~ilv~nk~D~~  150 (301)
                      .++++||.|..
T Consensus       306 t~iiiThlD~~  316 (359)
T 2og2_A          306 TGLILTKLDGS  316 (359)
T ss_dssp             CEEEEESCTTC
T ss_pred             eEEEEecCccc
Confidence            67899999865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.28  E-value=7.9e-06  Score=72.95  Aligned_cols=123  Identities=17%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-------CCCCccccCCCCCcc-e----------eeEeEE--------------EE
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSSGVT-K----------TCEMKT--------------TV   64 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~-------g~~~~~~~~~~~~~t-~----------~~~~~~--------------~~   64 (301)
                      .+...|+++|++|+||||+...|.       |..+.-....+.... .          ......              +.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            345789999999999999999987       655432111111000 0          000000              00


Q ss_pred             --eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188           65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                        ...+..+.||||||....   +.....++.....  ...++.+++|+++....  ......+.+....+     ..-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~-----i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNEALP-----LTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHHHSC-----CCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhccCC-----CeEE
Confidence              014567899999997653   2233333333221  23678999999987332  12222233322211     1457


Q ss_pred             EEeCCCCCC
Q 022188          143 VFTGGDDLE  151 (301)
Q Consensus       143 v~nk~D~~~  151 (301)
                      |+||+|...
T Consensus       246 VlnK~D~~~  254 (433)
T 2xxa_A          246 VLTKVDGDA  254 (433)
T ss_dssp             EEECTTSSS
T ss_pred             EEecCCCCc
Confidence            999999653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.25  E-value=1.1e-05  Score=68.35  Aligned_cols=122  Identities=17%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------CCCCCccee-----------eEeEE----------EEeeCCe
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGSSGVTKT-----------CEMKT----------TVLKDGQ   69 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~   69 (301)
                      ++..|+|+|++|+||||++..|.+......|       ......+..           .....          +....+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            4578999999999999999998753321111       000000000           00000          0001345


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~  149 (301)
                      .+.|+||||....   ......++...+.  ...++.+++|++++..  ..+   +..+...+..  ....-+++||.|.
T Consensus       184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~  251 (296)
T 2px0_A          184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE  251 (296)
T ss_dssp             SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred             CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence            7899999998753   2222233333321  2246788899988732  122   1222233321  1245577899996


Q ss_pred             CC
Q 022188          150 LE  151 (301)
Q Consensus       150 ~~  151 (301)
                      ..
T Consensus       252 ~~  253 (296)
T 2px0_A          252 TT  253 (296)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.25  E-value=5.1e-06  Score=70.49  Aligned_cols=122  Identities=15%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCc-ce----------eeEeEE--------------EE--e
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-TK----------TCEMKT--------------TV--L   65 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~-t~----------~~~~~~--------------~~--~   65 (301)
                      ...|+++|++|+||||++..|.      |..+.-........ +.          ......              ..  .
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999987      33322111111000 00          000000              00  0


Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      +.+..+.+|||||.... ..+.....++.....  ...+|.+++|+++...  .......+.+.+    .. ....+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~~-~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----AS-KIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----TC-TTEEEEEE
T ss_pred             hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----hC-CCCEEEEe
Confidence            14567899999997651 112223333322211  1256899999998722  222222333322    11 12778999


Q ss_pred             CCCCC
Q 022188          146 GGDDL  150 (301)
Q Consensus       146 k~D~~  150 (301)
                      |+|..
T Consensus       248 k~D~~  252 (297)
T 1j8m_F          248 KMDGT  252 (297)
T ss_dssp             CGGGC
T ss_pred             CCCCC
Confidence            99965

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.18  E-value=3.4e-06  Score=71.90  Aligned_cols=60  Identities=27%  Similarity=0.266  Sum_probs=37.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C-cceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      +..++|+|++|+|||||+|+|+ ...+.++....    + .++.... ... . .....++||||+...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~-~-~~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIP-F-GKGSFVGDTPGFSKV  229 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEE-E-TTTEEEESSCCCSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEE-c-CCCcEEEECcCcCcC
Confidence            3689999999999999999999 76555553322    1 1221111 111 1 123579999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.13  E-value=1.2e-06  Score=76.09  Aligned_cols=30  Identities=30%  Similarity=0.504  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-cccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~   48 (301)
                      +..++|+|++|+|||||+|+|+|... ..++
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence            35899999999999999999999876 5554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.12  E-value=6.2e-05  Score=66.82  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCCCcce-----------eeEeEEE--------------Ee-
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSGVTK-----------TCEMKTT--------------VL-   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~------~~~~~~~~t~-----------~~~~~~~--------------~~-   65 (301)
                      ++..|+++|++|+||||++..|.+.....      .+........           .......              .. 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999886432111      0000000000           0000000              00 


Q ss_pred             -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                       ..+..+.||||||....   +.....++.......  .++.+++|+|+...  .......+.+....+     ..-+|+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l~-----i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHTC-----CCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcCC-----ceEEEE
Confidence             13557899999997653   233334443332222  56888999998732  112222233332221     366889


Q ss_pred             eCCCCC
Q 022188          145 TGGDDL  150 (301)
Q Consensus       145 nk~D~~  150 (301)
                      ||.|..
T Consensus       245 TKlD~~  250 (425)
T 2ffh_A          245 TKLDGD  250 (425)
T ss_dssp             ESGGGC
T ss_pred             eCcCCc
Confidence            999964

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.07  E-value=7.5e-05  Score=63.95  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .++..|+|+|++|+||||++..|.+.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.06  E-value=2.8e-06  Score=72.37  Aligned_cols=60  Identities=30%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      +..++|+|++|+|||||+|+|.|...+.++....    +  .|.....  .. . .....++|+||+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~-~-~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LK-F-DFGGYVVDTPGFANL  234 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EE-C-TTSCEEESSCSSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EE-c-CCCCEEEECcCCCcc
Confidence            3579999999999999999999987765553322    1  1211111  11 1 123479999997664

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.04  E-value=3.2e-05  Score=68.75  Aligned_cols=107  Identities=18%  Similarity=0.167  Sum_probs=59.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh-------C----------CCCccccCCCCCcceeeEeEE----EEeeCC--eeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL-------G----------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNVI   74 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~li   74 (301)
                      +...|+|+|+.++|||+|+|.|+       |          ...|..+.+..+.|+-.-...    ....++  ..+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            45688999999999999999765       2          233444333333333322211    111133  358999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN  130 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~  130 (301)
                      ||.|+++.......-..-+.-++..+    +.+||=..  ..+...+...|..+.+
T Consensus       146 DTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          146 DTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred             eccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence            99999987654322111122222223    55555443  3566777666666554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.98  E-value=0.00016  Score=61.20  Aligned_cols=121  Identities=17%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCCCc-ce----------eeEeEEE--------------Ee-
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGV-TK----------TCEMKTT--------------VL-   65 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~------~~~~~~~-t~----------~~~~~~~--------------~~-   65 (301)
                      .+..|+++|++|+||||++..|.+......      +...... ..          .......              .. 
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999875422111      0000000 00          0000000              00 


Q ss_pred             -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (301)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~  144 (301)
                       ..+..+.++||||....   +.....++.......  .++.+++|+++...  .......+.+...+     ...-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~~-----~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhcC-----CCCEEEE
Confidence             13567899999987653   333344444433322  46888899998721  22222223222221     1356889


Q ss_pred             eCCCCC
Q 022188          145 TGGDDL  150 (301)
Q Consensus       145 nk~D~~  150 (301)
                      ||.|..
T Consensus       245 nk~d~~  250 (295)
T 1ls1_A          245 TKLDGD  250 (295)
T ss_dssp             ECGGGC
T ss_pred             ECCCCC
Confidence            999964

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.85  E-value=9.7e-06  Score=66.43  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            3468999999999999999999998764444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.82  E-value=1.1e-05  Score=65.51  Aligned_cols=30  Identities=23%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            457999999999999999999998764443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.77  E-value=1.5e-05  Score=66.31  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3468999999999999999999998764444

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.77  E-value=1.9e-05  Score=65.07  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3568999999999999999999998765444

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.77  E-value=1.6e-05  Score=66.16  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            3468999999999999999999998764443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.77  E-value=1.7e-05  Score=66.20  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            468999999999999999999998764443

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.76  E-value=1.4e-05  Score=64.46  Aligned_cols=30  Identities=20%  Similarity=0.112  Sum_probs=25.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            457999999999999999999998764443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.76  E-value=1.7e-05  Score=65.85  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3468999999999999999999998764444

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.76  E-value=1.6e-05  Score=66.07  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998765444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.75  E-value=1.7e-05  Score=64.66  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            468999999999999999999997764433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.75  E-value=1.7e-05  Score=66.52  Aligned_cols=30  Identities=23%  Similarity=0.248  Sum_probs=25.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            468999999999999999999998764443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.74  E-value=1.7e-05  Score=65.12  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -.++|+|++|||||||++.|+|...+.+|
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            46899999999999999999998764443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.74  E-value=1.8e-05  Score=65.03  Aligned_cols=30  Identities=30%  Similarity=0.437  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            468999999999999999999998764444

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.74  E-value=1.6e-05  Score=65.27  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3468999999999999999999998764433

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.72  E-value=2e-05  Score=65.06  Aligned_cols=30  Identities=23%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            468999999999999999999998764444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.72  E-value=1.3e-05  Score=62.62  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +++|+|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.71  E-value=2.1e-05  Score=66.05  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence            467999999999999999999998765444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.71  E-value=2.2e-05  Score=65.49  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3468999999999999999999998764444

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.69  E-value=2.3e-05  Score=64.91  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   60 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQG   60 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            457999999999999999999998764443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.69  E-value=2.4e-05  Score=65.47  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3468999999999999999999998764444

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.69  E-value=1.3e-05  Score=63.86  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..++|+|++|||||||++.|+|..
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4679999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.68  E-value=2.5e-05  Score=59.77  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++..++|+|++|||||||++.|+|.. ..++
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence            34689999999999999999999876 4444

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.68  E-value=0.0002  Score=63.10  Aligned_cols=73  Identities=14%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--C-------CCHHHHHHHHHHHHhhCcc-
Q 022188           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--R-------FSQEEETAVHRLPNLFGKN-  135 (301)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~-------~~~~~~~~l~~l~~~~~~~-  135 (301)
                      .++..+.+|||+|-..           +......++.+++++|+|+|+++  .       .. .-.....++....... 
T Consensus       214 ~~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n-s~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          214 VDKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN-RLQEALNLFKSIWNNRW  281 (402)
T ss_dssp             ETTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB-HHHHHHHHHHHHHTCTT
T ss_pred             cCCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccc-hHHHHHHHHHHHHhccc
Confidence            5678899999999543           22334556889999999999984  0       11 1122333444333211 


Q ss_pred             -ccCeEEEEEeCCCCC
Q 022188          136 -VFDYMIVVFTGGDDL  150 (301)
Q Consensus       136 -~~~~~ilv~nk~D~~  150 (301)
                       ...|++|++||+|+.
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence             123899999999964

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.67  E-value=1.8e-05  Score=63.38  Aligned_cols=26  Identities=35%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..++|+|++|||||||++.|+|..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999999865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.65  E-value=3e-05  Score=64.04  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFK   46 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~   46 (301)
                      +-.++|+|++|+|||||++.|+|...+.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            4579999999999999999999987543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.60  E-value=2.9e-05  Score=61.88  Aligned_cols=26  Identities=12%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..|+|+|++|||||||++.|.|..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34679999999999999999999753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.60  E-value=3.4e-05  Score=65.11  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            3468999999999999999999998764443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.59  E-value=2.9e-05  Score=60.78  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..++|+|++|||||||++.|.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3679999999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.59  E-value=2.8e-05  Score=62.88  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ....+..++|+|++|||||||++.|+|...
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            344567899999999999999999998654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.59  E-value=7.7e-05  Score=63.43  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=61.3

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHH-HHHHHHHHHhhCccccCeEEEEEeC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      ..+.+|||  .....           .....++.++|++++|+|++++. +... ..++..+.. .  +.  |+++|+||
T Consensus        63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~--~~--piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N--EL--ETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T--TC--EEEEEECC
T ss_pred             CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C--CC--CEEEEEeH
Confidence            37899999  22211           11123578899999999998554 3333 334444433 1  22  99999999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHcC--CceEEecCCCcccccchhHHHHHHHHHH
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      +|+...  ..+++         ...+....+  ..++.      +||+++.++++++..+.
T Consensus       125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~~------~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          125 MDLYDE--DDLRK---------VRELEEIYSGLYPIVK------TSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             GGGCCH--HHHHH---------HHHHHHHHTTTSCEEE------CCTTTCTTHHHHHHHHS
T ss_pred             HHcCCc--hhHHH---------HHHHHHHHhhhCcEEE------EECCCCcCHHHHHHHhc
Confidence            997644  22211         122222223  34444      78888889998887754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.58  E-value=3.5e-05  Score=63.72  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999996

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.57  E-value=4.9e-05  Score=59.84  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ++..|+|+|++||||||+++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.56  E-value=3.3e-05  Score=65.64  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            3568999999999999999999997764444

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.56  E-value=4.4e-05  Score=63.75  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++-.++|+|++|||||||++.|+|..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999973

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.56  E-value=4.9e-05  Score=65.98  Aligned_cols=31  Identities=16%  Similarity=0.138  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|.|...+.+|
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            3468999999999999999999998765444

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.56  E-value=2.8e-05  Score=62.89  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..++|+|++|||||||++.|+|..
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34679999999999999999999854

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.55  E-value=4.4e-05  Score=63.49  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            346899999999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.55  E-value=4.7e-05  Score=63.36  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|.. +.+|
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            4579999999999999999999987 5544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.55  E-value=5e-05  Score=65.84  Aligned_cols=30  Identities=17%  Similarity=0.330  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            467999999999999999999998765544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.52  E-value=3.9e-05  Score=61.52  Aligned_cols=28  Identities=32%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      .++..|+|+|++|||||||++.|.|...
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999987543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.51  E-value=2e-05  Score=63.29  Aligned_cols=30  Identities=23%  Similarity=0.291  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      +-.++|+|++|+|||||++.|+|. .+.+|.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~   51 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ   51 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence            357999999999999999999998 655443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.50  E-value=6.5e-05  Score=65.25  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence            3467999999999999999999998765444

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.50  E-value=6.6e-05  Score=65.27  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence            3467999999999999999999998765444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.49  E-value=7e-05  Score=65.45  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence            467999999999999999999998765444

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.48  E-value=6.6e-05  Score=65.07  Aligned_cols=30  Identities=30%  Similarity=0.346  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            468999999999999999999998765444

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.47  E-value=5e-05  Score=60.84  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ++..|+|+|++|||||||++.|.|.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.46  E-value=7.7e-05  Score=65.10  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            3468999999999999999999998765544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.46  E-value=7.2e-05  Score=57.96  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ++-.++|+|++|||||||++.+.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            346799999999999999998653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.45  E-value=6.1e-05  Score=65.19  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|+|||||++.|+|...+.+|
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   55 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence            3468999999999999999999998764444

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.43  E-value=8.3e-05  Score=64.96  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence            467999999999999999999998765544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.42  E-value=6.7e-05  Score=62.38  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      .++..++|+|++|+|||||++.|+|...
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            3457899999999999999999998543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.42  E-value=0.00026  Score=59.46  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=58.4

Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      -..||...      ...+++...+.    .+|+++.|+|+..+.+......-+.    ++.   +|+++++||+|+.+. 
T Consensus         4 ~w~PGhm~------ka~~~~~~~l~----~aDvVl~VvDAr~p~~~~~~~l~~~----l~~---kp~ilVlNK~DL~~~-   65 (282)
T 1puj_A            4 QWFPGHMA------KARREVTEKLK----LIDIVYELVDARIPMSSRNPMIEDI----LKN---KPRIMLLNKADKADA-   65 (282)
T ss_dssp             -----CTT------HHHHHHHHHGG----GCSEEEEEEETTSTTTTSCHHHHHH----CSS---SCEEEEEECGGGSCH-
T ss_pred             cCCchHHH------HHHHHHHHHHh----hCCEEEEEEeCCCCCccCCHHHHHH----HCC---CCEEEEEECcccCCH-
Confidence            34677543      23445555544    5599999999986666543222222    232   399999999998754 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                       ...+.         +.......+..++.      .|+..+.++.+|++.+...+.
T Consensus        66 -~~~~~---------~~~~~~~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           66 -AVTQQ---------WKEHFENQGIRSLS------INSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             -HHHHH---------HHHHHHTTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred             -HHHHH---------HHHHHHhcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence             22222         22333333445555      566677788888887766654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.40  E-value=0.00043  Score=60.51  Aligned_cols=98  Identities=10%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (301)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (301)
                      .+.+.+...++..+++++|+|+.+.    ...+...+.+.++.   .|+++|+||+|+...  ....+.+..    .+..
T Consensus        58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~~  124 (368)
T 3h2y_A           58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMRY  124 (368)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHHH
T ss_pred             HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHHH
Confidence            4445555555677899999999832    23344455555443   399999999998754  211111111    0233


Q ss_pred             HHHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          172 ILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       172 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .....+.   .++.      .||+++.++++|++.+....
T Consensus       125 ~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          125 SAKQLGLKPEDVFL------ISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHTTCCCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEE------EeCCCCcCHHHHHhhhhhhc
Confidence            4455555   4444      78889999999999997754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.39  E-value=5.8e-05  Score=65.51  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|+|...+.+|
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   60 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3468999999999999999999998765544

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.39  E-value=7.8e-05  Score=61.67  Aligned_cols=31  Identities=13%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKA   47 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~---g~~~~~~   47 (301)
                      ..+..|+|+|++||||||+++.|.   |...+.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~   58 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS   58 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence            345789999999999999999999   7655443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.38  E-value=7.5e-05  Score=63.35  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..++|+|++|+|||||++.|+|..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            45789999999999999999999753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.37  E-value=9.4e-05  Score=59.27  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..|+|+|++||||||+++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.37  E-value=9.2e-05  Score=58.64  Aligned_cols=26  Identities=38%  Similarity=0.763  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..|+|+|++|+|||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            34689999999999999999999754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.35  E-value=9.2e-05  Score=60.93  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ++..|+|+|++|||||||++.|.|.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.35  E-value=0.00011  Score=60.52  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCCcc
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK   46 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~---g~~~~~   46 (301)
                      ...|+|+|++||||||+++.|.   |...+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            4689999999999999999999   876543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.34  E-value=7.7e-05  Score=60.75  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=16.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh-CCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL-GRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~-g~~   43 (301)
                      +..|+|+|++||||||+++.|. |..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4689999999999999999999 764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.33  E-value=0.00015  Score=66.65  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|+||||||||++.|+|...+..|
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G   54 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFG   54 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            3568999999999999999999998765555

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.31  E-value=0.00012  Score=62.59  Aligned_cols=28  Identities=21%  Similarity=0.137  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ..+..|+|+|++|||||||++.|.|...
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            4567999999999999999999997543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.31  E-value=8.5e-05  Score=58.57  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      .+++|+|++|+|||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3589999999999999999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.29  E-value=0.00089  Score=56.81  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             cCCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188          100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ++.++|++++|+|++++ ++... .+++..+.. .+  .  |+++|+||+|+...  ..+. ....     +.......+
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~--~--~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g  142 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK--V--EPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG  142 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT--C--EEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC--C--CEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence            46788999999999855 45543 234444433 22  2  89999999998644  2111 1111     233344445


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l  204 (301)
                      ..++.      .||+++.++++|++.+
T Consensus       143 ~~~~~------~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLK------VSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEE------CCTTTCTTHHHHHHHT
T ss_pred             CeEEE------EECCCCCCHHHHHhhc
Confidence            55555      5666667777766653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.29  E-value=0.00017  Score=66.34  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      .++-.++|+|++|+|||||++.|+|...+.+|.
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            456789999999999999999999987655543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.27  E-value=0.00015  Score=63.28  Aligned_cols=27  Identities=33%  Similarity=0.637  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF   45 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~   45 (301)
                      +..++|+|++|+|||||+++|+|....
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            468999999999999999999987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.00018  Score=66.94  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|.
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~  133 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGR  133 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence            46789999999999999999999988766553

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.27  E-value=0.00014  Score=57.94  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998765

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.24  E-value=0.0032  Score=49.74  Aligned_cols=68  Identities=6%  Similarity=-0.014  Sum_probs=42.5

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      ...+.|||||+...         ......+..+    |.+++++..+ ..+......++.+...-......++.+|+|+.
T Consensus        75 ~yD~viiD~~~~~~---------~~~~~~l~~a----d~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS---------VITSAAVMVS----DLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS---------HHHHHHHHHC----SEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC---------HHHHHHHHHC----CEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            46789999998654         1223333333    8999999988 44433455666665542111112678999999


Q ss_pred             CC
Q 022188          148 DD  149 (301)
Q Consensus       148 D~  149 (301)
                      +.
T Consensus       141 ~~  142 (206)
T 4dzz_A          141 IE  142 (206)
T ss_dssp             CT
T ss_pred             CC
Confidence            84

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.23  E-value=0.00014  Score=57.74  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+..|+|+|++||||||+++.|.+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.23  E-value=0.00019  Score=55.60  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|+|+|++||||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.21  E-value=0.00014  Score=57.17  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++||||||+++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999985

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.21  E-value=0.00022  Score=66.39  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=28.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      ..+-.++|+|++|+|||||++.|+|...+.+|.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            456789999999999999999999987655554

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.20  E-value=0.00014  Score=62.63  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF   45 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~   45 (301)
                      +..++|+|++|+|||||++.|+|....
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            357999999999999999999987653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.18  E-value=0.0002  Score=62.84  Aligned_cols=26  Identities=42%  Similarity=0.491  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCC
Confidence            46899999999999999999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.16  E-value=0.00019  Score=62.40  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ...|+|+|++|+|||||+++|+|...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            45899999999999999999987543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.15  E-value=0.00037  Score=55.55  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ....|+|+|++|+||||+.+.|.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45789999999999999999999753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.14  E-value=0.00017  Score=55.68  Aligned_cols=23  Identities=35%  Similarity=0.679  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.13  E-value=0.00024  Score=60.53  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+..|+|+|++|||||||++.|.|.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.13  E-value=0.00021  Score=57.86  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998743

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.09  E-value=0.00032  Score=65.19  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++..++|+|++|+|||||++.|+|...+.+|
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  398 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG  398 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3468999999999999999999998765444

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.08  E-value=0.00031  Score=65.28  Aligned_cols=30  Identities=33%  Similarity=0.482  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            468999999999999999999998764444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.08  E-value=0.00035  Score=64.17  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      .+-.++|+|++|+|||||++.|+|...+.+|.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  342 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK  342 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            34689999999999999999999987655553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.08  E-value=0.00035  Score=64.14  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G  323 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEITADEG  323 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            457999999999999999999998765554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.08  E-value=0.00025  Score=64.68  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      +..|+|+|+||||||||+++|+|...
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35699999999999999999998664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.08  E-value=0.00036  Score=64.99  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|.
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  412 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK  412 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4689999999999999999999987655553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.08  E-value=0.00067  Score=59.28  Aligned_cols=98  Identities=10%  Similarity=0.046  Sum_probs=59.5

Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      +.+.+...+.+.+++++|+|+.+.. .   .+...+.+.++.   +|+++|+||+|+...  ....+.+..    .+...
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~-~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~  127 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFN-G---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM  127 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSG-G---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCC-C---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence            4444444445669999999998433 2   122233333443   399999999998754  211111111    12334


Q ss_pred             HHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          173 LQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       173 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ....|.   .++.      .||+++.++++|++.+.....
T Consensus       128 ~~~~g~~~~~v~~------iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCL------VSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEE------EECCCCCCHHHHHHHHHhhcc
Confidence            455554   3444      788899999999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.08  E-value=0.00027  Score=56.09  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..|+|+|++|+||||+.+.|.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998644

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.05  E-value=0.00021  Score=63.36  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      +...|+|+|+||+|||||+++|+|...
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            346899999999999999999997644

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.05  E-value=0.00027  Score=61.91  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ++..|+|+|++|+|||||++.|+|...
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456899999999999999999997543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.02  E-value=0.00037  Score=55.47  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+..|+|+|++||||||+++.|...
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34577999999999999999999753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.01  E-value=0.00033  Score=65.32  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            3568999999999999999999998765444

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.00  E-value=0.00038  Score=59.44  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .....|+|+|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.00  E-value=0.00034  Score=56.87  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .++..|+|.|++||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.97  E-value=0.00044  Score=55.06  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999986

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00021  Score=64.22  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~   47 (301)
                      .+.+++|+|++|+|||||++.|+|......
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~  166 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN  166 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence            356899999999999999999998765333

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.97  E-value=0.00017  Score=55.79  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ..|+|+|++|+|||||++.|++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4699999999999999999997543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.97  E-value=0.00027  Score=65.60  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            3568999999999999999999998764444

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.96  E-value=0.00031  Score=61.37  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ..+++|+|++|+|||||++.|.|...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.96  E-value=0.00028  Score=54.96  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..++|+|++|+|||||+++|.+..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.00057  Score=63.61  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -.++|+|++|+|||||++.|+|...+.+|
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            35899999999999999999998876555

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.93  E-value=0.00028  Score=63.61  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -.++|+|++|+|||||+++|+|...+.+|
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            57899999999999999999986554443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.92  E-value=0.00031  Score=53.02  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..++|+|++|+|||||++++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.92  E-value=0.00039  Score=55.25  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4699999999999999999986

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.91  E-value=0.00041  Score=56.04  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0061  Score=54.19  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+-|++.||||+|||+|.++|.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999999985

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.90  E-value=0.0083  Score=58.47  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l   39 (301)
                      +..++|+|+||+||||+++.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            468999999999999999998

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.90  E-value=0.00048  Score=54.73  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+..|+|+|++|+||||+++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.88  E-value=0.00039  Score=60.20  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      .+-+++|+|++|+|||||++.|+|...
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.88  E-value=0.00042  Score=64.48  Aligned_cols=30  Identities=33%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G  398 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRLIDPERG  398 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence            568999999999999999999998765444

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.88  E-value=0.00046  Score=59.07  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ...++|+|++|||||||+|.|+|..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4678999999999999999999764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.86  E-value=0.00038  Score=67.82  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-+++|+|++|+|||||++.|+|...+.+|
T Consensus       699 GeivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          699 SSRIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            458999999999999999999998764443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.84  E-value=0.00057  Score=53.56  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +-|+|+||+|||||||++.|+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            34899999999999999999754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.84  E-value=0.00069  Score=53.79  Aligned_cols=103  Identities=8%  Similarity=0.023  Sum_probs=56.3

Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc---ccCeEEEEEeCC-CCCCCccccHHHHhcccCCchH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKPL  169 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~~l  169 (301)
                      ...+..++.+.|++|||||.+++-....+..+..|..++..+   ...|++|+.||. |....  .+..+..+. ..  +
T Consensus       116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~--L  190 (227)
T 3l82_B          116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH--L  190 (227)
T ss_dssp             -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT--G
T ss_pred             HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC--C
Confidence            334445667789999999998432222333332222222211   112899999985 55444  333333222 11  1


Q ss_pred             HHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      ..    ....+++    .+++|.+|.|+.+-++|+...+.
T Consensus       191 ~~----l~R~W~I----q~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          191 NL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             GG----GCSCEEE----EEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cC----CCCCEEE----EEeECCCCcCHHHHHHHHHHHHH
Confidence            11    1223332    23788899999999999976553

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.82  E-value=0.00064  Score=52.88  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+|+|++|+||||++.+|.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.80  E-value=0.00086  Score=53.10  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..|+|+|++|+||||+.+.|.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.00077  Score=53.37  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +...|+|+|++||||||+.+.|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.77  E-value=0.00074  Score=51.86  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l   39 (301)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46999999999999999999

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.76  E-value=0.00082  Score=52.10  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|+|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            57999999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.74  E-value=0.00089  Score=56.42  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .....|+|+|++|||||||.+.|.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999987643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.72  E-value=0.00085  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.71  E-value=0.0011  Score=49.93  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|++|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467999999999999999975

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0097  Score=52.19  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +-|++.||||+|||++.+++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            56999999999999999999853

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.70  E-value=0.0012  Score=52.56  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..+..|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999999873

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.66  E-value=0.0011  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..|+|+|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.66  E-value=0.0011  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5699999999999999999984

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.012  Score=51.84  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+-|++.||+|+|||+|.++|.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            367999999999999999999853

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.64  E-value=0.00073  Score=60.36  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      .+-+++|+|++|+|||||++.|+|...
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            457899999999999999999998654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.00093  Score=52.97  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|++||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.63  E-value=0.00075  Score=56.44  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 022188           22 VVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~   42 (301)
                      ++|+|++|+|||||+++|.|.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.62  E-value=0.0016  Score=50.77  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+..|+|+|.+|+||||+.+.|.+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999753

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.62  E-value=0.0085  Score=58.26  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..++|+||||+|||||++.+.+
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHH
Confidence            46899999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.61  E-value=0.0015  Score=51.00  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...+|+|+|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999998743

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.0097  Score=52.79  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+-|++.||||+|||++.++|++
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            36699999999999999999984

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0013  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999863

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.59  E-value=0.0013  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|+|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56999999999999999999753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.59  E-value=0.0018  Score=51.22  Aligned_cols=26  Identities=19%  Similarity=0.435  Sum_probs=21.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ......|+|.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33457899999999999999999873

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.57  E-value=0.0011  Score=53.59  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..++|+|++|+|||||++.|++.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999999853

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.57  E-value=0.0013  Score=57.33  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|+|||||||++++|+
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            357799999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.54  E-value=0.0016  Score=51.00  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.51  E-value=0.0069  Score=48.25  Aligned_cols=65  Identities=12%  Similarity=0.029  Sum_probs=39.3

Q ss_pred             CeeEEEEeCCCC-CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEe
Q 022188           68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT  145 (301)
Q Consensus        68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~n  145 (301)
                      ...+.++|||+. ...         .....+..    +|.+++++..+ ..+... ...++.+....+    .++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~---------~~~~~l~~----aD~viiv~~~~-~~~~~~~~~~~~~l~~~~~----~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---------DLEALADG----CDLLVIPSTPD-ALALDALMLTIETLQKLGN----NRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS---------HHHHHHHT----SSEEEEEECSS-HHHHHHHHHHHHHHHHTCS----SSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH---------HHHHHHHH----CCEEEEEecCC-chhHHHHHHHHHHHHhccC----CCEEEEEE
Confidence            457899999986 441         22333433    38999988877 322222 344455544222    26889999


Q ss_pred             CCCCC
Q 022188          146 GGDDL  150 (301)
Q Consensus       146 k~D~~  150 (301)
                      +.+..
T Consensus       129 ~~~~~  133 (209)
T 3cwq_A          129 IIPPY  133 (209)
T ss_dssp             SBCCT
T ss_pred             ecCCc
Confidence            99854

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.51  E-value=0.0016  Score=52.36  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.51  E-value=0.0012  Score=55.68  Aligned_cols=27  Identities=19%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      ++-.++|+|++|+|||||++.|++...
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999886543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.50  E-value=0.0018  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ....|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.50  E-value=0.0018  Score=50.22  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|+|.+|+||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.49  E-value=0.00014  Score=59.07  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAF   45 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~   45 (301)
                      .++|+|++|+|||||+++|+|...+
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccccc
Confidence            4689999999999999999986653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.49  E-value=0.001  Score=55.22  Aligned_cols=42  Identities=12%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ..+|+++.|+|+..+.+..... +. +   ++    +|.++|+||+|+.+.
T Consensus        20 ~~~D~vl~VvDar~P~~~~~~~-l~-l---l~----k~~iivlNK~DL~~~   61 (262)
T 3cnl_A           20 RLVNTVVEVRDARAPFATSAYG-VD-F---SR----KETIILLNKVDIADE   61 (262)
T ss_dssp             TTCSEEEEEEETTSTTTTSCTT-SC-C---TT----SEEEEEEECGGGSCH
T ss_pred             hhCCEEEEEeeCCCCCcCcChH-HH-h---cC----CCcEEEEECccCCCH
Confidence            4559999999998665553311 11 1   12    399999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.49  E-value=0.0017  Score=49.92  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|+|+|++|+|||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999999853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.48  E-value=0.0016  Score=51.49  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999974

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.47  E-value=0.016  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|.|++|+|||++.+++..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999974

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.46  E-value=0.0017  Score=50.53  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999996

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.45  E-value=0.0019  Score=54.33  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..+..|+|+|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999974

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.45  E-value=0.0012  Score=54.41  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q 022188           22 VVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++|+|++|+|||||+++|.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.44  E-value=0.002  Score=50.93  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999743

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.41  E-value=0.0019  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999974

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.40  E-value=0.0021  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999974

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.40  E-value=0.0018  Score=51.78  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999985

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.39  E-value=0.0016  Score=56.97  Aligned_cols=24  Identities=21%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|+|+|++|+|||||++.|.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.39  E-value=0.0015  Score=66.41  Aligned_cols=31  Identities=23%  Similarity=0.198  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-+|+|||++|+|||||++.|+|...+.+|
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence            3568999999999999999999987664444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.39  E-value=0.0022  Score=50.34  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +...|+|+|++||||||+.+.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999986

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.39  E-value=0.0021  Score=50.30  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..|+|+|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999886

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.35  E-value=0.0024  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...|+|+|++|+||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4679999999999999999987

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.34  E-value=0.002  Score=51.50  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999963

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.33  E-value=0.0016  Score=63.56  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +-+++|+|++|+|||||++.|+|.
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999953

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.33  E-value=0.0025  Score=51.08  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.33  E-value=0.0015  Score=53.70  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.+|+|+|++|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0024  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|+|++|+||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.31  E-value=0.0019  Score=65.41  Aligned_cols=30  Identities=30%  Similarity=0.286  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus       416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             TCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            468999999999999999999998764444

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.31  E-value=0.0025  Score=50.76  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999973

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.30  E-value=0.03  Score=49.63  Aligned_cols=24  Identities=33%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|+|++||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.30  E-value=0.0028  Score=51.90  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.28  E-value=0.0021  Score=51.40  Aligned_cols=23  Identities=13%  Similarity=0.007  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..++|+|++|+|||||+..|++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999986

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.28  E-value=0.0017  Score=54.33  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q 022188           22 VVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g~~   43 (301)
                      |+|+|++|+|||||+++|.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            9999999999999999998643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.27  E-value=0.0016  Score=56.03  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ..++|+|++|+|||||++.|.+..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            458999999999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.26  E-value=0.00071  Score=60.04  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .++|+|+||+|||||+++|.+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999853

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.26  E-value=0.0025  Score=64.81  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++..++|+|++|+|||||++.|+|...+..|
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence            3568999999999999999999998765544

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.25  E-value=0.0025  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999973

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.24  E-value=0.0024  Score=51.34  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.24  E-value=0.0022  Score=52.19  Aligned_cols=24  Identities=13%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..++|+|++|+|||||+..|++.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999999999999974

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.23  E-value=0.0023  Score=49.40  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999999863

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.21  E-value=0.0031  Score=50.08  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            567999999999999999974

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.21  E-value=0.0017  Score=62.35  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..++|+|++|+|||||++.|.|..
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHH
Confidence            45789999999999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.18  E-value=0.0029  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.18  E-value=0.0038  Score=48.67  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|.|.+||||||+.+.|.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.18  E-value=0.0029  Score=52.16  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .|+|+|++|||||||.+.|.+
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.18  E-value=0.0072  Score=51.20  Aligned_cols=47  Identities=19%  Similarity=0.067  Sum_probs=30.3

Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHH--HhhCccccCeEEEEEeCCCCCCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLP--NLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...+|.+++|+++..+..... .+-+.|.  +..+.    |.++|+||+|+.+.
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~----~~vivlnK~DL~~~  132 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDI----QPIICITKMDLIED  132 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTC----EEEEEEECGGGCCC
T ss_pred             HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCC----CEEEEEECCccCch
Confidence            456799999999984433333 2222332  22233    88999999998755

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.17  E-value=0.0025  Score=52.54  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+..|+|+|++||||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998743

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.15  E-value=0.0044  Score=49.75  Aligned_cols=25  Identities=20%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.+.|+|+|+|||||+|....|...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999998743

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.12  E-value=0.0033  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999863

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.12  E-value=0.0014  Score=52.23  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999743

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.09  E-value=0.0034  Score=63.65  Aligned_cols=30  Identities=27%  Similarity=0.252  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-+++|+|++|+|||||++.|+|...+.+|
T Consensus      1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A         1059 GQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp             SSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            468999999999999999999998765544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.08  E-value=0.0036  Score=50.83  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...|+|.|++|+||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999997

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.07  E-value=0.0033  Score=50.22  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999986

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.06  E-value=0.0041  Score=50.45  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.05  E-value=0.0048  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|.|++|+||||+++.+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.04  E-value=0.014  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .++|.|++|+||||+++.|.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999873

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.04  E-value=0.0036  Score=48.88  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999973

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.04  E-value=0.0042  Score=49.54  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|+|.+|+||||+.+.|.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.03  E-value=0.0045  Score=50.17  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+..|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.02  E-value=0.0053  Score=51.41  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ....|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999987

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.02  E-value=0.004  Score=53.66  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|+||+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999974

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.02  E-value=0.0032  Score=48.93  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+|+|+|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            459999999999999999885

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.02  E-value=0.003  Score=52.79  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..++|+|++|+|||||+..+++
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999886

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.01  E-value=0.0039  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +|+|+|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.00  E-value=0.0029  Score=49.02  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=16.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999986

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.025  Score=50.40  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+-|++.||+|+|||+|.++|.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            3467999999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.97  E-value=0.0036  Score=47.97  Aligned_cols=21  Identities=19%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|.|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            459999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.97  E-value=0.0046  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999873

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.97  E-value=0.0045  Score=50.87  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.93  E-value=0.54  Score=45.63  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ..++|+|++|+|||++++.|.+..
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.93  E-value=0.0025  Score=60.80  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..++|+|++|+|||||++.|.|..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            4689999999999999999998754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.93  E-value=0.029  Score=55.33  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~   44 (301)
                      +..++|+|++|+|||||++.+ |...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            478999999999999999998 6543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.93  E-value=0.0044  Score=49.94  Aligned_cols=20  Identities=30%  Similarity=0.733  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      .|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.91  E-value=0.0025  Score=58.50  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..|+|+|++||||||+++.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45789999999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.90  E-value=0.0042  Score=51.12  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|+|++|+||||++++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45999999999999999999853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.89  E-value=0.0054  Score=47.41  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.88  E-value=0.0037  Score=55.79  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +..++|+|++|+|||||+++|.+..
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4678999999999999999998644

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.87  E-value=0.0051  Score=48.39  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...|+|+|.+||||||+.+.|.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.86  E-value=0.0047  Score=49.52  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999985

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.86  E-value=0.0042  Score=53.87  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...+|+|++|+||||++++|.+
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4789999999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.82  E-value=0.0027  Score=59.98  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +-.++|+|++|||||||++.|+
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            4579999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.81  E-value=0.0055  Score=46.81  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+|+|.|.+||||||+.+.|.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999985

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.79  E-value=0.0045  Score=53.61  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+..++|+|++|+|||||++.+++..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.78  E-value=0.0043  Score=53.06  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|+||+|||||+.+|.
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHH
Confidence            378999999999999999997

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.68  E-value=0.038  Score=47.15  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|+|.|++|+|||++.+++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            367999999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.65  E-value=0.0049  Score=56.47  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHH--HhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNS--ILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~--l~g~   42 (301)
                      .+..++|+|++|||||||++.  +.|.
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl   64 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGI   64 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999  4454

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.62  E-value=0.0072  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|.|++|+|||+|+.+|...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998853

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.61  E-value=0.0072  Score=48.76  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...++|.|++|+||||+++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.60  E-value=0.0045  Score=52.12  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=17.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999863

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.60  E-value=0.0085  Score=47.14  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|+|++|+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999843

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.59  E-value=0.009  Score=50.43  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|+|+|+||+|||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            367899999999999999999743

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.58  E-value=0.0091  Score=51.07  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ..|+|+|++|+|||||...|....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            579999999999999999998654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.57  E-value=0.006  Score=50.88  Aligned_cols=96  Identities=9%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             HhccCCCccEEEEEEecCC--CCCHHHHHHH----HHHHHhh-CccccCeEEEEEeCC-CCCCCccccHHHHhcccCCch
Q 022188           97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAV----HRLPNLF-GKNVFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKP  168 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l----~~l~~~~-~~~~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~~  168 (301)
                      +..++.+.|++|||||.++  |+.  .+..+    .++.+.. -.++  |++|+.||. |....  .+..+..+. ..  
T Consensus       204 Wr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~a--pLLVfANKkQDlp~A--ms~~EI~e~-L~--  274 (312)
T 3l2o_B          204 IQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGR--PLLVLSCISQGDVKR--MPCFYLAHE-LH--  274 (312)
T ss_dssp             HHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTC--CEEEEEEESSTTSCB--CCHHHHHHH-TT--
T ss_pred             HHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCC--eEEEEeCCcccccCC--CCHHHHHHH-cC--
Confidence            3345566799999999984  443  22222    3332221 1123  899999964 66544  333332222 11  


Q ss_pred             HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +..    ....+++    .+++|.+|.|+.+-++|+...+.
T Consensus       275 L~~----l~r~W~I----q~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          275 LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             GGG----GCSCEEE----EEEETTTCTTHHHHHHHHHHHSC
T ss_pred             Ccc----CCCcEEE----EecccCCCcCHHHHHHHHHHHHH
Confidence            111    1222322    23788899999999999987764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.55  E-value=0.0086  Score=50.68  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ..|+|+||||+|||||...|....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            568999999999999999997543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.53  E-value=0.083  Score=45.63  Aligned_cols=48  Identities=15%  Similarity=0.071  Sum_probs=28.4

Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...+|.+++|......++......+-.+.+..+.    |.++|+||+|+.+.
T Consensus       128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~----~~iivlNK~DL~~~  175 (358)
T 2rcn_A          128 AANIDQIVIVSAILPELSLNIIDRYLVGCETLQV----EPLIVLNKIDLLDD  175 (358)
T ss_dssp             EECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTC----EEEEEEECGGGCCH
T ss_pred             HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC----CEEEEEECccCCCc
Confidence            3567888877665534444432222222233344    78999999998754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.50  E-value=0.018  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .++|.|++|+||||+++.+...
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.48  E-value=0.0082  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .|+|.|++|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.47  E-value=0.0069  Score=46.66  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...++|.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998743

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.43  E-value=0.007  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..+++.|++|+||||++.+|..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999888864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.42  E-value=0.14  Score=43.36  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+++.|++|+|||++++++..
T Consensus        50 ~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHH
Confidence            356667799999999999974

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.38  E-value=0.0096  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999974

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.36  E-value=0.0094  Score=51.10  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            57999999999999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.35  E-value=0.008  Score=56.80  Aligned_cols=18  Identities=44%  Similarity=0.663  Sum_probs=16.6

Q ss_pred             ceEEEEEcCCCCcHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATG   36 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStli   36 (301)
                      +-.++|+|++|||||||+
T Consensus        44 Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           44 GKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TSEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHh
Confidence            468999999999999996

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.35  E-value=0.01  Score=51.81  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|+||+||||++.+|.
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            568999999999999999964

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.34  E-value=0.015  Score=48.88  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...++|.|++|+|||++.++|..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678889999999999999984

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.32  E-value=0.011  Score=50.06  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|+|.|++|+|||+++++|.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            367999999999999999999853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.32  E-value=0.011  Score=50.44  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|+|++|+||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.28  E-value=0.011  Score=47.97  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..++|+|++|+|||||+..++
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999976664

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.27  E-value=0.0093  Score=48.20  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=19.2

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .....+..|+|.|++||||||+++.|..
T Consensus        20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           20 GSMARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             ---CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3334568899999999999999999873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.27  E-value=0.011  Score=49.60  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|.|++|+|||++++++.+
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            36799999999999999999985

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.23  E-value=0.015  Score=49.01  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...++|+|++|+|||++.++|.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.14  E-value=0.013  Score=48.83  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...++|.|++|+|||++++++.+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999999743

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.13  E-value=0.013  Score=51.36  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|+|++|+|||||...|..
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5789999999999999999864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.08  E-value=0.016  Score=48.84  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|.|++|+|||++.+++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999987764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.04  E-value=0.014  Score=43.49  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|.|.|++|+|||++..+|...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999999743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.00  E-value=0.011  Score=54.36  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ++..++|+|++|+|||||+++|.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            34679999999999999999998644

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.00  E-value=0.014  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|+|+|++|+||||+...|.+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-28
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-07
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-05

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  106 bits (265), Expect = 6e-28
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G +    S   S   +   +  +    G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137
           L +    ++     I     +    I   L V  +   R    ++     + + FGK ++
Sbjct: 90  LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
           +  IV  T            ++F   +  + L ++++   +                   
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA-------------- 192

Query: 198 RQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE 239
               S +  V+++N G+   ++       L +  A +  L +
Sbjct: 193 --QASDIPVVLIENSGRCNKND--SDEKVLPNGIAWIPHLVQ 230

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVI 74
            +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           D PG+   +   +           + K   + +     ++    ++ +  + +  ++  K
Sbjct: 113 DLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163

Query: 135 NVFDYMIVVFTGGD-DLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179
                   V T  D D+ +           E  K L++I   C N 
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDKE--KVLQDIRLNCVNT 203

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+G    GKS   + +   K     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           + +     +G + ++ +      I   + +  +  R   ++   +++  + +   + +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPK 167
            ++     D+ +  + LE F       
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 21/196 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           V L+G    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
            ++  + +G E ++ +   +  ++                +      P L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
            V               D L  E  K L + L       +     T     G   +++ L
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTG---AGLPALKEAL 163

Query: 202 -SLVNSVIVQNGGQPY 216
            +LV S       +P 
Sbjct: 164 HALVRSTPPPEMPKPV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.77
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.77
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.75
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.73
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.72
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.72
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.72
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.71
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.7
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.7
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.69
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.69
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.69
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.68
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.67
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.67
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.66
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.66
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.65
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.64
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.58
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.57
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.55
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.52
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.5
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.45
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.44
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.4
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.34
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.25
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.24
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.24
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.1
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.03
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.94
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.94
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.8
d1okkd2	207	GTPase domain of the signal recognition particle r	98.75
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.74
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.72
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.14
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.06
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.83
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.81
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.8
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.8
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.74
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.73
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.72
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.72
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.71
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.71
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.7
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.7
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.7
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.61
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.53
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.52
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.52
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.38
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.26
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.24
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.2
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.16
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.12
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.1
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.08
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.06
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.03
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.02
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.99
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.99
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.99
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.98
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.98
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.97
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.97
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.96
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.96
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.96
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.94
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.93
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.89
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.84
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.84
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.82
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.79
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.79
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.78
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.78
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.75
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.75
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.75
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.74
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.6
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.6
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.57
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.56
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.46
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.44
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.4
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.2
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.17
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.16
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.08
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.05
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.04
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.04
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.0
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.99
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.95
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.9
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.9
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.9
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.88
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.78
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.77
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.68
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.63
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.6
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.48
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.46
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.42
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.41
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.33
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.25
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.21
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.07
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.05
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.04
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.98
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.96
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.93
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.87
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.84
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.67
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.57
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.55
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.51
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.37
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.84
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.81
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.58
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.56
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.47
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.14
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.87
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.84
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.83
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.8
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.72
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.55
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.5
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.44
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.42
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.2
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.03
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.02
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.0
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.95
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.57
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.51
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.6
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.54
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.51
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.6
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.31
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.3
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.12
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.0
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.6
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	84.43
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.36
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.08
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	84.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.12
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.07

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=8.1e-23  Score=160.43  Aligned_cols=165  Identities=19%  Similarity=0.187  Sum_probs=115.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ..|+|+|++|+|||||+|+|+|......  +....++...........+..+.++||||+........   ..+......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALG---EFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHH---HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee--cccCCcccccccceeeeeeeeeeecccccccccccccc---hhccccccc
Confidence            5799999999999999999999876332  22333333333333447788999999999987543322   223333334


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-C
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-N  178 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  178 (301)
                      +...+|++|+|+|++.+++..+..+++.++...+.   .|+++|+||+|+...    .++.+.        .+....+ .
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~----~~~~~~--------~~~~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY----PEEAMK--------AYHELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS----HHHHHH--------HHHHTSTTS
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccC----HHHHHH--------HHHhhcccC
Confidence            45678999999999988888887888888765433   399999999998654    122222        1222223 2


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+++      +||+++.|+++|++.|.+.+++
T Consensus       146 ~~~~------iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         146 EPRM------LSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EEEE------CCTTCHHHHHHHHHHHHTTCCB
T ss_pred             ceEE------EecCCCCCHHHHHHHHHHhCCC
Confidence            3343      6889999999999999998876

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.90  E-value=2.3e-23  Score=172.64  Aligned_cols=155  Identities=23%  Similarity=0.331  Sum_probs=121.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ..++|+|+|.+|+|||||+|+|+|...+.+... .+.|..+...... .++..+.||||||+.++......+...+..+.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~~~~-~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEEEEE-eccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            458999999999999999999999998766533 3555555555444 78999999999999987766666555554443


Q ss_pred             hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                        ....+|+++||++++ .+++..+...++.+.+.||.++++++++|+||+|...+++..+++|+.. ....+..++..+
T Consensus       109 --~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~  185 (257)
T d1h65a_         109 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG  185 (257)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHH
Confidence              345789999999887 5899999999999999999999999999999999887655778887765 444455555554


Q ss_pred             C
Q 022188          177 D  177 (301)
Q Consensus       177 ~  177 (301)
                      .
T Consensus       186 ~  186 (257)
T d1h65a_         186 A  186 (257)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=7.7e-21  Score=149.24  Aligned_cols=168  Identities=15%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      .|+|+|.+|||||||+|+|+|......  ...+.|+...........+..+.+|||||+.............+...    
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~----   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH----   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH----
Confidence            399999999999999999999876332  23344555444433435667899999999876322111111223333    


Q ss_pred             CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (301)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (301)
                      ...+++++++++...............+.........+|+++|+||+|+...  ..+.+         +.+.+...+.++
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~~~~  145 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGLAV  145 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTSCE
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHH---------HHHHHHhcCCeE
Confidence            3456999999998733222223333333322111123499999999998765  33332         233333445566


Q ss_pred             EEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +.      +||+++.|+++|++.|...++..
T Consensus       146 ~~------iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         146 LP------VSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             EE------CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EE------EEcCCCCCHHHHHHHHHHHHhhc
Confidence            65      78999999999999999988653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=7.8e-21  Score=149.60  Aligned_cols=167  Identities=21%  Similarity=0.215  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHH----HHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV----GKEIVKC   96 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~----~~~~~~~   96 (301)
                      +|+|+|++|||||||+|+|+|.....+  ..++.|.....  +   ....+.++||||++.........    ...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~--~~~g~T~~~~~--~---~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKIIE--I---EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCEE--E---EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--CCCCEeecccc--c---ccccceecccCCceeccccccccccccchhhhhh
Confidence            599999999999999999999875221  22234444322  2   22346789999987766554333    3344444


Q ss_pred             HhccCCCccEEEEEEecCC-----------CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188           97 LGMAKDGIHAFLVVFSVTN-----------RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~  165 (301)
                      +....+.+|++++|+|+..           .....+...++.+.+. +.    |+++|+||+|..... ....+.+... 
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~----p~iiv~NK~D~~~~~-~~~~~~~~~~-  147 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-DI----PTIVAVNKLDKIKNV-QEVINFLAEK-  147 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TC----CEEEEEECGGGCSCH-HHHHHHHHHH-
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-CC----CEEEEEeeeehhhhH-HHHHHHHHHH-
Confidence            4455677899999999852           3444555666666553 32    999999999987541 1111111110 


Q ss_pred             CchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                         +...+......+++      .||+++.|+++|++.|.+.+++
T Consensus       148 ---~~~~~~~~~~~~~~------vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         148 ---FEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             ---HTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---hcccccccCCeEEE------EECCCCCCHHHHHHHHHHHccC
Confidence               00000001112333      7889999999999999988875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.3e-19  Score=143.89  Aligned_cols=170  Identities=16%  Similarity=0.242  Sum_probs=111.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH--HHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV   94 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~   94 (301)
                      .+.++|+|+|++|||||||+|+|+|.............|......    .....+.++|+||..........  ....+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY----IINDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE----EETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc----cccccceEEEEEeeccccccccccchhhhHH
Confidence            344689999999999999999999976422222222223222221    22345678899887665444322  222223


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ..........+++++++|+..+++..+...++.+... +.    |+++|+||+|....  ..+.++...     ++..+.
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~~----piivv~NK~D~~~~--~~~~~~~~~-----~~~~l~  164 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-GI----PVIVIATKADKIPK--GKWDKHAKV-----VRQTLN  164 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHHT
T ss_pred             hhhhccccchhhhhhhhhccccccccccccccccccc-cC----cceechhhccccCH--HHHHHHHHH-----HHHHhc
Confidence            3333446778999999999988998888888888764 32    89999999998766  566666554     444443


Q ss_pred             Hc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .- ...+++      .||.++.|+++|+++|.+++
T Consensus       165 ~~~~~~~~~------~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         165 IDPEDELIL------FSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCEEE------EeCCCCCCHHHHHHHHHHHh
Confidence            22 234444      78888999999999998876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=9.1e-21  Score=156.65  Aligned_cols=214  Identities=18%  Similarity=0.246  Sum_probs=137.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCCCccc-------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      +.++|+|+||.|+|||||+.+|+   |...-..             .....+.|.......+. |++..++++||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~-~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE-ETTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec-cCCeEEEEecCCchhh
Confidence            45789999999999999999985   2111000             00111344555555555 8999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~  161 (301)
                      +..       +....+..+    |+.|+|+|+.++........|+...+. +  .  |.++++||+|....   .+.+  
T Consensus        84 F~~-------e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~~-~--l--P~i~fINKmDr~~a---d~~~--  142 (276)
T d2bv3a2          84 FTI-------EVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEKY-K--V--PRIAFANKMDKTGA---DLWL--  142 (276)
T ss_dssp             CST-------THHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSTTC---CHHH--
T ss_pred             hHH-------HHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHHc-C--C--CEEEEEeccccccc---ccch--
Confidence            865       556666655    999999999999999999999988765 3  3  99999999998766   2222  


Q ss_pred             cccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc---CCC-----CCchHHHHHHHHHHHhHHH
Q 022188          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN---GGQ-----PYTDELKRGATELRDKKAE  233 (301)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~  233 (301)
                            .+.++-..++.++.++.-+...    +.++..+.+.+......+   .+.     ..+.++.....+.  +...
T Consensus       143 ------~l~ei~~~l~~~~vp~~~Pig~----~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~--~~~l  210 (276)
T d2bv3a2         143 ------VIRTMQERLGARPVVMQLPIGR----EDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREY--HEKL  210 (276)
T ss_dssp             ------HHHHHHHTTCCCEEECEEEESC----GGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHH--HHHH
T ss_pred             ------hHHHHHHHhCCCeEEEEecccC----CCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHH--HHHH
Confidence                  2555667778888776543221    122222222222111111   011     2455666666664  4455


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188          234 VDSLKEYSKREISKLMGQMQESYEDRIKRMAE  265 (301)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  265 (301)
                      ++.+.+.+++.++++.++.+...++..+.+++
T Consensus       211 ~e~vae~Dd~L~e~yle~~e~~~eel~~~l~~  242 (276)
T d2bv3a2         211 VEVAADFDENIMLKYLEGEEPTEEELVAAIRK  242 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             hhhhhcccHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            67777888888888877655544444444433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.3e-19  Score=140.42  Aligned_cols=171  Identities=20%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH-----HHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-----VGKE   92 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-----~~~~   92 (301)
                      ...+|+|+|++|+|||||+|+|+|........  ...++.........+++..+.++||||+.........     ....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP--IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeec--ccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence            35899999999999999999999987633332  2333333333334478899999999998643211100     0112


Q ss_pred             HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ....+.    .+|++++|+|+..+.......++..+... +.    |+++++||+|........+.++...     +...
T Consensus        85 ~~~~~~----~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~~----~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~  150 (186)
T d1mkya2          85 VVDSIE----KADVVVIVLDATQGITRQDQRMAGLMERR-GR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREK  150 (186)
T ss_dssp             HHHHHH----HCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred             HHHHHh----cCCEEEEeecccccchhhHHHHHHHHHHc-CC----ceeeeccchhhhcchhhhhhhHHHH-----HHHH
Confidence            333333    45999999999978888777777766653 33    8999999999875532334443332     3333


Q ss_pred             HHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+. .++++      .||+++.|+++|++.|...+..
T Consensus       151 ~~~~~~~~i~~------vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         151 LYFIDYSPLIF------TSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             CGGGTTSCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hcccCCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            22222 23444      7899999999999999887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=2.4e-19  Score=140.37  Aligned_cols=162  Identities=19%  Similarity=0.225  Sum_probs=105.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ..+|+|+|++|+|||||+|+|++.........     ..+.+....... ..+.+..+.++|+||..+           +
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~d~~g~~~-----------~   72 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSA-FKLENYRITLVDAPGHAD-----------L   72 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCE-EEETTEEEEECCCSSHHH-----------H
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccc-cccCCccccccccccccc-----------c
Confidence            47899999999999999999997543211100     112222222222 236788899999999432           2


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      ......+...+|++++++++..+....++..+..+... +.    |+++++||+|....  .........     ++.++
T Consensus        73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~~----p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~~  140 (179)
T d1wb1a4          73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL  140 (179)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred             ccchhhhhhhccccccccccccccchhhhhhhhhhhhc-CC----cceeccccccccCH--HHHHHHHHH-----HHHHH
Confidence            23333345567999999999988888877777666553 43    89999999998765  333332222     33444


Q ss_pred             HHcC----CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCD----NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....    .++++      +||++|.|+++|++.|...++.
T Consensus       141 ~~~~~~~~~~iv~------iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         141 QSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCeEEE------EEccCCcCHHHHHHHHHhcCCc
Confidence            3321    24444      8999999999999999988875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=9.4e-20  Score=141.71  Aligned_cols=163  Identities=19%  Similarity=0.211  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLG   98 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~   98 (301)
                      +|+|+|++|+|||||+|+|+|.......  ....++..............+.++||||+.+....  ..........   
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~---   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE--DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLN---   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec--ccCceeeccccccccccccccccccccceeeeecccccccccccccc---
Confidence            5999999999999999999997653222  22222222223233367788999999998775432  1222222222   


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                       ....+|+++++++.+.++...+..++..+... +.    |+++++||+|+.+.    ....+       ..++......
T Consensus        77 -~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~~----pviiv~NK~Dl~~~----~~~~~-------~~~~~~~~~~  139 (171)
T d1mkya1          77 -MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE----FEREV-------KPELYSLGFG  139 (171)
T ss_dssp             -HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH----HHHHT-------HHHHGGGSSC
T ss_pred             -ccccCcEEEEeecccccccccccccccccccc-cc----cccccchhhhhhhh----hhhHH-------HHHHHhcCCC
Confidence             23566999999999888888888777777653 43    89999999997643    11111       1122222122


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+++      .||+++.|+++|+++|.+.+++.
T Consensus       140 ~~i~------iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         140 EPIP------VSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             SCEE------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CeEE------EecCCCCCHHHHHHHHHHhCCCC
Confidence            3333      79999999999999999888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=6.2e-20  Score=141.24  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=103.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      +.+|+++|++|||||||+|+|+|........  .+.++...........+..+.++||||+.+......   ........
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~   75 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD--IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE---RIGIERAW   75 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS--STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH---HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeec--ccccccceEeeeeeccCceeeeccccccccccccch---hHHHHHHH
Confidence            3689999999999999999999987633222  222222222333447888999999999988643222   22222233


Q ss_pred             ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      .++..+|++++++|...+.+......+..+.......  .|+++|+||+|+.... ..    +.           ...+.
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~~-~~----~~-----------~~~~~  137 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGET-LG----MS-----------EVNGH  137 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCCC-CE----EE-----------EETTE
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhhH-HH----HH-----------HhCCC
Confidence            3456789999999998665555555444333333322  3999999999965431 00    01           01122


Q ss_pred             ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ++++      .||+++.|+++|+++|.+.
T Consensus       138 ~~~~------iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         138 ALIR------LSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             EEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred             cEEE------EECCCCCCHHHHHHHHHhh
Confidence            3444      7899999999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=4.7e-19  Score=136.04  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~   97 (301)
                      ++|+|+|++|+|||||+|+|+|......... .+.+...... .....+..+.++||||+......  .....+.....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISE-EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCE-EEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeecc-ccccccceeE-EEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            4799999999999999999998875332221 1222222222 23367889999999997653221  111112233333


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                          ..+|++++|+|++++....+......+..    .   ++++++||.|....  ...++...         .+. ..
T Consensus        79 ----~~ad~ii~v~d~~~~~~~~~~~~~~~~~~----~---~~i~~~~k~d~~~~--~~~~~~~~---------~~~-~~  135 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSPLDEEDRKILERIKN----K---RYLVVINKVDVVEK--INEEEIKN---------KLG-TD  135 (160)
T ss_dssp             ----HHCSEEEEEEETTSCCCHHHHHHHHHHTT----S---SEEEEEEECSSCCC--CCHHHHHH---------HHT-CS
T ss_pred             ----HhCCEEEEEEeCCCCcchhhhhhhhhccc----c---cceeeeeeccccch--hhhHHHHH---------HhC-CC
Confidence                34499999999997777776655444322    2   79999999998765  33322211         111 12


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .++++      .||+++.|+++|++.|.+
T Consensus       136 ~~~~~------vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         136 RHMVK------ISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             TTEEE------EEGGGTCCHHHHHHHHHH
T ss_pred             CcEEE------EECCCCCCHHHHHHHHHh
Confidence            34444      799999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=1.7e-19  Score=142.10  Aligned_cols=168  Identities=17%  Similarity=0.125  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (301)
                      .|+|+|++|||||||+|+|+|....  .....+.|+..........++..+.+|||||+.............+...+.. 
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~--~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~-   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc--eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH-
Confidence            4999999999999999999998762  2334455555544444545677899999999754222222223334443333 


Q ss_pred             CCCccEEEEEEecC--CCCCHHHH-HHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188          101 KDGIHAFLVVFSVT--NRFSQEEE-TAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus       101 ~~~~~~il~v~~~~--~~~~~~~~-~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                         ++.++++++..  ......+. ............. ..+|+++|+||+|..+.  ...           +..+....
T Consensus        80 ---~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~~  143 (185)
T d1lnza2          80 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEKL  143 (185)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHHC
T ss_pred             ---hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHHh
Confidence               37787777765  22333322 2222222222211 23589999999997644  111           12222222


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      +...    +...+||.++.|+++|++.|.+.++..
T Consensus       144 ~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         144 TDDY----PVFPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CSCC----CBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             ccCC----cEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            2111    123479999999999999999988653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4e-18  Score=132.08  Aligned_cols=159  Identities=15%  Similarity=0.128  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++...........  +......... ..+  ..+.+|||||...           +....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~l~~wDt~G~e~-----------~~~~~   71 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIY-RNDKRIKLQIWDTAGQER-----------YRTIT   71 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCC--SEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCccccccc--ccceeeEEEE-eecceEEEEEEECCCchh-----------hHHHH
Confidence            689999999999999999998765422222222  2222222222 233  4678999999433           22233


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++.+|++|+|+|.+++-+... ..++..+........  |++++.||+|.........++         ...+....
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~v~~~~---------~~~~~~~~  140 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA--QVLLVGNKCDMEDERVVSSER---------GRQLADHL  140 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcc--eEEEEEeecccccccccchhh---------hHHHHHHc
Confidence            445788999999999984333222 234444444433333  899999999976431111111         23344555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      +||+++.|++++++.+.+.+.
T Consensus       141 ~~~~~e------~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         141 GFEFFE------ASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             TCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence            667766      889999999999999887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=9.6e-19  Score=142.09  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEE-----------------EeeCCeeEEEEeCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----------------VLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----------------~~~~~~~~~liDtPG~~~~   82 (301)
                      +.|+|+|++++|||||+|+|++......  ...+.+........                 ..+.+..+.++||||..++
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhe--ecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            4599999999999999999997543111  11111111111110                 1145668999999997765


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      ...           ...+...+|++|+|+|+..+++..+...+..+... +.    |+++++||+|+...
T Consensus        84 ~~~-----------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~iivlNK~D~~~~  137 (227)
T d1g7sa4          84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIHG  137 (227)
T ss_dssp             TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSTT
T ss_pred             ccc-----------chhcccccceEEEEEecccCcccchhHHHHHhhcC-CC----eEEEEEECccCCCc
Confidence            321           12234567999999999989999999988888764 33    99999999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.77  E-value=1.2e-17  Score=131.82  Aligned_cols=164  Identities=18%  Similarity=0.223  Sum_probs=108.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC------c------c--ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA------F------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      +..+|+++|+.++|||||+++|++...      +      .  ......+.|.......+. +.+..++++||||..+  
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-~~~~~~~~iDtPGh~~--   78 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHAD--   78 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHH--
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-eceeeEEeecCcchHH--
Confidence            347899999999999999999985210      0      0  001122455555555444 7889999999999444  


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                               +...+......+|++++|+|+..+...++++.+..+... +..   |+++++||+|..... ..++....+
T Consensus        79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~~---~iIv~iNK~D~~~~~-~~~~~i~~~  144 (196)
T d1d2ea3          79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVE---HVVVYVNKADAVQDS-EMVELVELE  144 (196)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred             ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cCC---cEEEEEecccccccH-HHHHHHHHH
Confidence                     333333445677999999999989998888887777664 433   799999999987541 233333333


Q ss_pred             cCCchHHHHHHHcCC-----ceEEecCCCcccccch----------hHHHHHHHHHHHHHh
Q 022188          164 ECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV  209 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~L~~~l~~~~~  209 (301)
                           ++.++..++.     ++++      .|+..+          .++..|++.|...+|
T Consensus       145 -----i~~~l~~~~~~~~~~pii~------iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         145 -----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             -----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             -----HHHHHHHhCCCcccCEEEE------EEccccccccCcccccCCHHHHHHHHHhhCC
Confidence                 5666655543     2333      565555          477788887766544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.76  E-value=1.3e-17  Score=128.63  Aligned_cols=159  Identities=13%  Similarity=0.068  Sum_probs=100.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||||+|+|.+.....     ..+|.......+. .++..+.+|||||..           .+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~-----~~~t~~~~~~~~~-~~~~~~~~~D~~G~~-----------~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-----ISPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSS-----CCCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCc-----ccceEeeeeeecc-ccccceeeeecCcch-----------hhhhHHH
Confidence            4789999999999999999999876421     2333333333333 678899999999932           2333344


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHH-HHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+..++++++|+|+++..+..+ ...+ ..+......+  .|+++|.||+|+...  ....+.... ..      ....
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~~~~~-~~------~~~~  133 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGA--LSCNAIQEA-LE------LDSI  133 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTC--CCHHHHHHH-TT------GGGC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCC--CceEEEEeccccccc--cCHHHHHHH-HH------hhhh
Confidence            56788999999999985444433 2222 2332221222  399999999998654  333332221 00      1111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+.+   ..+||+++.|+.+++++|.+.+
T Consensus       134 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         134 RSHHWRI---QGCSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             CSSCEEE---EECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCCEE---EEEECCCCCCHHHHHHHHHHHH
Confidence            2221111   1378999999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=6.9e-18  Score=134.40  Aligned_cols=138  Identities=15%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--cCC-------------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--SAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (301)
                      +..+|+++||.++|||||+++|+.......  +..             ..+.|.......+. +++..++++||||..++
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~-~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE-eCCeEEEEEeCCCchhh
Confidence            347999999999999999999973210000  000             01455555555555 88999999999998874


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~  162 (301)
                             ..++...+.    .+|++|+|+|+..++..++++.+..+... |.+   ++++++||+|..+.. ..+++...
T Consensus        81 -------~~~~~~~~~----~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi~---~iiv~iNK~D~~~~~-~~~~~~~~  144 (204)
T d2c78a3          81 -------IKNMITGAA----QMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDDP-ELLDLVEM  144 (204)
T ss_dssp             -------HHHHHHHHT----TCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCCH-HHHHHHHH
T ss_pred             -------HHHHHHHHH----HCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEecccCCCH-HHHHHHHH
Confidence                   234555554    45999999999999999998888887765 432   578889999987541 23444444


Q ss_pred             ccCCchHHHHHHHcC
Q 022188          163 HECPKPLKEILQLCD  177 (301)
Q Consensus       163 ~~~~~~l~~~~~~~~  177 (301)
                      .     ++.++...+
T Consensus       145 ~-----i~~~l~~~~  154 (204)
T d2c78a3         145 E-----VRDLLNQYE  154 (204)
T ss_dssp             H-----HHHHHHHTT
T ss_pred             H-----HHHHHHhcC
Confidence            4     555555443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.75  E-value=3.9e-19  Score=146.50  Aligned_cols=208  Identities=20%  Similarity=0.213  Sum_probs=125.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh---CCCCcc----ccCC---------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSIL---GRKAFK----ASAG---------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~---g~~~~~----~~~~---------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (301)
                      ++|+|+||.|+|||||+.+|+   |.....    .+..         ..+.|.......+. |++..+++|||||..++.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~-~~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc-ccccceeEEccCchhhhh
Confidence            789999999999999999995   221100    0000         12345555555555 899999999999998863


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~  163 (301)
                             .+....+..+    |++|+|+|+..+......+.++.+.+. +.    |.++++||+|....    ..+.   
T Consensus        82 -------~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~-~~----p~~i~iNk~D~~~~----~~~~---  138 (267)
T d2dy1a2          82 -------GEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKGGD----YYAL---  138 (267)
T ss_dssp             -------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGCCC----HHHH---
T ss_pred             -------hhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhc-cc----cccccccccccccc----chhh---
Confidence                   3666666666    999999999999999999999988775 33    89999999996422    2222   


Q ss_pred             cCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh-cC----CCCCchHHHHHHHHHHHhHHHHHHHH
Q 022188          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ-NG----GQPYTDELKRGATELRDKKAEVDSLK  238 (301)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
                           +..+...++ ++.++.-+.... ....++   ++.+...... ..    ....+.++...+++.  +...++.+.
T Consensus       139 -----l~~~~~~lg-~~vp~~~Pi~~~-~~f~Gv---vDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~--r~~L~E~va  206 (267)
T d2dy1a2         139 -----LEDLRSTLG-PILPIDLPLYEG-GKWVGL---IDVFHGKAYRYENGEEREAEVPPEERERVQRF--RQEVLEAIV  206 (267)
T ss_dssp             -----HHHHHHHHC-SEEECEEEEEET-TEEEEE---EETTTTEEEEEETTEEEEECCCGGGHHHHHHH--HHHHHHHHH
T ss_pred             -----hhhHHHHhc-cCcCeEeeeccC-CceeEE---eecCcceEEEecCCCCceeeCCHHHHHHHHHH--HHHHHHHHH
Confidence                 334445555 344433211100 000111   1111111000 00    112455666665654  455677777


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH
Q 022188          239 EYSKREISKLMGQMQESYEDRIKRM  263 (301)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~l  263 (301)
                      +.+++.++++.++.+-..++..+.+
T Consensus       207 e~Dd~Lle~yle~~~l~~eel~~~l  231 (267)
T d2dy1a2         207 ETDEGLLEKYLEGEEVTGEALEKAF  231 (267)
T ss_dssp             TTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             hcCHHHHHHHhCCCcccHHHHHHHH
Confidence            7777777777665544443333333

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=129.20  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++........  ...+.......+. ..+.  .+.+|||||...           +....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e~-----------~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVE-INGEKVKLQIWDTAGQER-----------FRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccceEEEEEEE-ECCEEEEEEEEECCCchh-----------hHHHH
Confidence            789999999999999999999765422221  1222222222222 3443  578899999432           33334


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.+++++++|+|.+++-+... ..++..+........  |+++|.||+|.........++         ...+....
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~ilvgnK~D~~~~~~v~~~~---------~~~~~~~~  140 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLVGNKIDLAERREVSQQR---------AEEFSEAQ  140 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCSSCHHH---------HHHHHHHH
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccc--cEEEEEeecccccccchhhhH---------HHHHHHhC
Confidence            556789999999999984433332 344455544433333  899999999976431111111         23444555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +.+++.      +||+++.|+++++..+...
T Consensus       141 ~~~~~~------~SAktg~gV~e~f~~l~~~  165 (171)
T d2ew1a1         141 DMYYLE------TSAKESDNVEKLFLDLACR  165 (171)
T ss_dssp             TCCEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEE------EccCCCCCHHHHHHHHHHH
Confidence            666666      8999999999998776543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-17  Score=128.32  Aligned_cols=159  Identities=17%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++.........  ..+......... .++  ..+.+|||||.....           ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~-----------~~~   66 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMY-LEDRTIRLQLWDTAGQERFR-----------SLI   66 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCC--CCSEEEEEEEEE-CSSCEEEEEEEEECCSGGGG-----------GGH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCcccc--ceeeeccceeec-cCCCceeeeecccCCcchhc-----------cch
Confidence            3799999999999999999997664222221  222222222222 333  467899999965521           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..++++++|+|.+++.+... ..++..+....+...  |+++|.||+|+.+......++         ...+....
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~  135 (164)
T d1yzqa1          67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAKEL  135 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhhhhhhHHH---------HHHHHHHc
Confidence            223567799999999985544443 445555555554444  899999999976431122211         33455556


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      +||+++.+++++++.|.+.++
T Consensus       136 ~~~~~e------~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         136 NVMFIE------TSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TCEEEE------CCTTTCTTHHHHHHHHHHHSC
T ss_pred             CCEEEE------ecCCCCcCHHHHHHHHHHhhC
Confidence            667665      899999999999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.73  E-value=5.2e-17  Score=128.68  Aligned_cols=164  Identities=13%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEE----------------------EeeCCeeEEEE
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT----------------------VLKDGQVVNVI   74 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~----------------------~~~~~~~~~li   74 (301)
                      +..+|+++|+.++|||||+|+|+|....... ....+.|........                      .......++++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            3478999999999999999999985321110 001112211111110                      01113458999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (301)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~  153 (301)
                      ||||..+           +...+......+|++++|+++..+. ....+..+..+... +..   ++++++||+|..+. 
T Consensus        84 DtPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~-  147 (195)
T d1kk1a3          84 DAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK-  147 (195)
T ss_dssp             ECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH-
T ss_pred             ccchhhh-----------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh-
Confidence            9999332           3333333345569999999999665 44445666555543 443   68889999998755 


Q ss_pred             cccHHHHhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          154 EKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                       .........     +..++.....   ++++      .||.+|.|+++|++.|.+.+|
T Consensus       148 -~~~~~~~~~-----~~~~~~~~~~~~~~iIp------iSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         148 -EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             -HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSC
T ss_pred             -HHHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCCCHHHHHHHHHHHCc
Confidence             333333333     4555554432   2343      799999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2e-17  Score=127.97  Aligned_cols=157  Identities=22%  Similarity=0.136  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++.+......  .+......  ...+. .++  ..+.+|||||.....           ...
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~~~--~~~i~-~~~~~~~l~i~D~~g~e~~~-----------~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTY--DRSIV-VDGEEASLMVYDIWEQDGGR-----------WLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEE--EEEEE-ETTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc--CCeeeeee--cceee-ccccccceeeeecccccccc-----------eec
Confidence            5899999999999999999998754221  11111111  11122 344  467899999954421           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.++|++++|+|++++-+-.. ..++..+....+. ...|+++|.||+|+.........+         ...+....
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~~---------~~~~~~~~  135 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF  135 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcchhHHH---------HHHHHHhc
Confidence            223567899999999985544444 2344444443322 223899999999976431111111         23444555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +||+++.++++++..+.+.+
T Consensus       136 ~~~~~e------~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         136 DCKFIE------TSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             TSEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence            666666      79999999999999886654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=129.93  Aligned_cols=156  Identities=17%  Similarity=0.078  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+|+|+|.+|+|||||++++++.......    .+|......... ..+  ...+.+|||||...           ....
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~----~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-----------FGGL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCE----EEETTEEEEEEEECBTTCCEEEEEEECTTHHH-----------HSSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc----ccceeccccccccccccccccccccccccccc-----------ccee
Confidence            68999999999999999999876542221    222222221111 123  34789999999322           2222


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++.++|++++|+|++++-+-.. ..++..+..... +.  |+++|.||+|+...  ...++         .......
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~--piilvgnK~Dl~~~--~~~~~---------~~~~~~~  134 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDIKDR--KVKAK---------SIVFHRK  134 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-SC--CEEEEEECCCCSCS--CCTTT---------SHHHHSS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccC-CC--ceeeecchhhhhhh--hhhhH---------HHHHHHH
Confidence            3345788999999999985544333 344454444433 23  99999999997654  11110         1233344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+.+++.      +||+++.++++++..|.+.+..
T Consensus       135 ~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         135 KNLQYYD------ISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             CSSEEEE------EBTTTTBTTTHHHHHHHHHHHT
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHHcc
Confidence            4555655      8899999999999999876654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.73  E-value=1.3e-17  Score=128.41  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=96.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+++|++|+|||||++++.+......    ..+|......... .++..+.+||+||...           +.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~~-~~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKIT-KGNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeeee-eeeEEEEEeecccccc-----------cccccc
Confidence            47899999999999999999987664222    1234333333333 6778999999999322           111122


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHH-HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+..++++++|+|++++.+-.. ...+. .+.......  .|++++.||.|....  ....+.... ...   ..+...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~~~--~~~~~i~~~-~~~---~~~~~~  137 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGA--LDEKELIEK-MNL---SAIQDR  137 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCCSS
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhhcccC--CcEEEEEeccccchh--hhHHHHHHH-HHH---HHHHhC
Confidence            23567799999999985443333 22333 333222222  399999999997654  333332222 100   001111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      +..++.      +|++++.|+++++++|.+
T Consensus       138 ~~~~~e------~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         138 EICCYS------ISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             CEEEEE------CCTTTCTTHHHHHHHHHH
T ss_pred             CCEEEE------EeCcCCcCHHHHHHHHHH
Confidence            223333      788899999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.8e-17  Score=124.74  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++.................  .... .++  ..+.+|||+|....           ....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~--~~~~-~~~~~~~~~~~d~~g~~~~-----------~~~~   69 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT--KKLN-IGGKRVNLAIWDTAGQERF-----------HALG   69 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEE--EEEE-SSSCEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchhe--eeec-cCCccceeeeeccCCccee-----------cccc
Confidence            689999999999999999998765422222212212111  1112 233  57789999995542           2223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.++|++++|+|++++-+-.. ..+++.+........  |++++.||+|+........++         ...+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~~ilvgnK~Dl~~~~~v~~~e---------~~~~a~~~  138 (167)
T d1z08a1          70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAESV  138 (167)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred             hhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccccc--ceeeeccccccccccccchHH---------HHHHHHHc
Confidence            446788999999999985444333 344454544433333  889999999976441111211         34455666


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +||+++.++++++..|.+.+
T Consensus       139 ~~~~~e------~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         139 GAKHYH------TSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             TCEEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEEE------EecCCCcCHHHHHHHHHHHH
Confidence            666665      89999999999999887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.6e-17  Score=127.90  Aligned_cols=156  Identities=19%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||+|++++...........+.....  .... .++  ..+.+|||||.........          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~--~~~~-~~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQ-VNDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEE--EEEE-ETTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccce--eeee-ecCceeeeeeeccCCccchhhhhh----------
Confidence            689999999999999999998655322211112222221  1112 333  4679999999766443221          


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                       ..++.++++++|+|++++-+-.. ..++..+.+..+. .  |+++|.||+|+...  ..+..       ...+.+....
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~--~iilVgnK~Dl~~~--~~v~~-------~~~~~~~~~~  136 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-I--PTALVQNKIDLLDD--SCIKN-------EEAEGLAKRL  136 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS-C--CEEEEEECGGGGGG--CSSCH-------HHHHHHHHHH
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCCC-c--eEEEeeccCCcccc--eeeee-------hhhHHHHHHc
Confidence             12457799999999985444333 3355555555443 2  89999999997643  11110       0133455556


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +.+++.      +||+++.|++++++.|.+.
T Consensus       137 ~~~~~e------~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         137 KLRFYR------TSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             TCEEEE------CBTTTTBSSHHHHHHHHHH
T ss_pred             CCEEEE------eccCCCcCHHHHHHHHHHH
Confidence            666665      8999999999999888654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=5.9e-17  Score=129.33  Aligned_cols=173  Identities=16%  Similarity=0.163  Sum_probs=102.4

Q ss_pred             CCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEeE--EE-----------------------
Q 022188           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMK--TT-----------------------   63 (301)
Q Consensus        10 ~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-~~~~t~~~~~~--~~-----------------------   63 (301)
                      |+...|.   .+|+++|+.++|||||+++|++......... ....+......  ..                       
T Consensus         2 ~~~~~p~---ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (205)
T d2qn6a3           2 WPKVQPE---VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS   78 (205)
T ss_dssp             CCCCCCC---EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred             CCCCCCC---eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeee
Confidence            5444433   8999999999999999999997543111100 00000000000  00                       


Q ss_pred             --EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeE
Q 022188           64 --VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYM  140 (301)
Q Consensus        64 --~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~  140 (301)
                        .....+.++++||||..+           +...+..+...+|++|+|+++..++ ....++.+..+.. ++..   |+
T Consensus        79 ~~~~~~~r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~---~i  143 (205)
T d2qn6a3          79 DDEPKFLRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVK---NL  143 (205)
T ss_dssp             CSCCEEEEEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CE
T ss_pred             eccccceEEEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCc---ee
Confidence              001124689999999443           3333333455679999999999776 5555666665554 4543   89


Q ss_pred             EEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       141 ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ++++||+|+...  .........     +...+.......++   ..+.||..+.++++|++.|...++.
T Consensus       144 IV~vNK~Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~p---~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         144 IIVQNKVDVVSK--EEALSQYRQ-----IKQFTKGTWAENVP---IIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             EEEEECGGGSCH--HHHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eeccccCCCccc--hHHHHHHHH-----HHHHhccccCCCCe---EEEEeCCCCCChHHHHHHHHhhCCC
Confidence            999999998755  333322222     33444333321111   1238999999999999999887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-17  Score=128.47  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++++......    ..+|...........++.  .+.+|||+|.....    .   .... 
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~----~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----~---~~~~-   69 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP----A---MQRL-   69 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH----H---HHHH-
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCc----cCcceeeccccceeeccccceecccccccccccc----c---cccc-
Confidence            47899999999999999999997664221    122333222222334554  56779999976631    1   1111 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         ++..+|++++|+|++++-+... ..++..+.+..+.....|+++|.||+|+........++         ...+...
T Consensus        70 ---~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e---------~~~~~~~  137 (171)
T d2erxa1          70 ---SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE---------AEALART  137 (171)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ---cccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHH---------HHHHHHH
Confidence               2345599999999984433333 34455555543322334899999999975431011111         2345555


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+.+++.      +||+++.|+++++..|.+.+
T Consensus       138 ~~~~~~e------~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         138 WKCAFME------TSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             HTCEEEE------CBTTTTBSHHHHHHHHHHTC
T ss_pred             cCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence            5666665      89999999999999887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.72  E-value=2.6e-17  Score=128.18  Aligned_cols=163  Identities=17%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (301)
Q Consensus        14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (301)
                      ++.....+|+++|++|||||||+|+|.+.......+ ..+    ....... ..+..+.++|+||....           
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~~----~~~~~i~-~~~~~~~i~d~~g~~~~-----------   73 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQG----FNIKSVQ-SQGFKLNVWDIGGQRKI-----------   73 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETT----EEEEEEE-ETTEEEEEEECSSCGGG-----------
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-eee----eeEEEec-cCCeeEeEeeccccccc-----------
Confidence            344566899999999999999999999876522211 111    1122222 56788999999995542           


Q ss_pred             HHHHhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      .......+..+|++++|+|++++.+..+. ..+..+..... ....|++++.||+|+...  .........     +.  
T Consensus        74 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~--  143 (176)
T d1fzqa_          74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN--  143 (176)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred             hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH--
Confidence            12223345677999999999855444442 23332222211 122399999999998765  333322221     00  


Q ss_pred             HHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      ......+.+.+   ..+||+++.|+++++++|.+
T Consensus       144 ~~~~~~~~~~~---~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         144 LHTIRDRVWQI---QSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             GGGCCSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhcCCEE---EEEeCCCCCCHHHHHHHHHh
Confidence            01112222221   12789999999999999865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-17  Score=126.21  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++.........  ..+......... .++.  .+.+|||||......        +.   
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~~~~--------~~---   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIE-VSGQKIKLQIWDTAGQERFRA--------VT---   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTT--SCCCCEEEEEEE-ETTEEEEEEEEECTTGGGTCH--------HH---
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccccceeEEEE-ECCEEEEEEEeccCCchhHHH--------HH---
Confidence            6899999999999999999987664322222  222222222222 3444  778999999654321        11   


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|++++-+-.. ..++..+........  |++++.||+|+........++         ...+....
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~  139 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILIGNKADLEAQRDVTYEE---------AKQFAEEN  139 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccc--eEEEEcccccchhhcccHHHH---------HHHHHHHc
Confidence            112345699999999984433322 345555555444333  899999999975431111111         34455555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      +.+++.      +||+++.|+++++..+.+.
T Consensus       140 ~~~~~e------~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         140 GLLFLE------ASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             TCEEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHH
Confidence            667766      8999999999999888654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=129.60  Aligned_cols=160  Identities=16%  Similarity=0.122  Sum_probs=98.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++..+|+++|.+|||||||++++.+.......     .|....... .......+.+||+||....           ...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~-~~~~~~~~~i~D~~g~~~~-----------~~~   72 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVET-VTYKNVKFNVWDVGGQDKI-----------RPL   72 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEE-EEETTEEEEEEEESCCGGG-----------HHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEE-eeccceeeEEecCCCcchh-----------hhH
Confidence            45689999999999999999999876542222     122222222 3367788999999996652           233


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHH-HHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHR-LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~-l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+..++++++|+|++++-+... ...+.. +.....  ...|++++.||+|+...  ....+.... ..      +.
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~--~~~piiiv~NK~Dl~~~--~~~~~i~~~-~~------~~  141 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIFANKQDLPDA--MKPHEIQEK-LG------LT  141 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGG--TTCEEEEEEECTTSTTC--CCHHHHHHH-TT------GG
T ss_pred             HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhccc--ccceeeeeeeccccccc--ccHHHHHHH-HH------HH
Confidence            3456788999999999984333332 222322 222212  22399999999997654  222221111 00      11


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      .+..+-+.+   ..+||+++.|+++++++|...
T Consensus       142 ~~~~~~~~~---~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         142 RIRDRNWYV---QPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             GCCSSCEEE---EECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHhCCCEE---EEeeCCCCcCHHHHHHHHHHh
Confidence            122211111   137999999999999999764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.8e-17  Score=130.18  Aligned_cols=161  Identities=18%  Similarity=0.146  Sum_probs=101.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++++...........+.+...  ..+. ..+  ..+.+|||||...+...           
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~--~~i~-~~~~~~~l~i~Dt~G~e~~~~~-----------   71 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVE-LDGKTVKLQIWDTAGQERFRTI-----------   71 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE--EEEE-ETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE--EEEE-EeeEEEEEEEEECCCchhhHHH-----------
Confidence            3789999999999999999998665422222222222221  2222 233  46788999996654321           


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++..+|++|+|+|.+++.+.... .++..+........  |++++.||.|.........++         .......
T Consensus        72 ~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~D~~~~~~~~~~~---------~~~~~~~  140 (194)
T d2bcgy1          72 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLVGNKCDLKDKRVVEYDV---------AKEFADA  140 (194)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred             HHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCc--eEEEEEeccccccccchhHHH---------Hhhhhhc
Confidence            12346788999999999854444432 34444444444334  999999999977542122211         2233344


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+..++.      +||+++.+++++++.+.+.+..
T Consensus       141 ~~~~~~e------~SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         141 NKMPFLE------TSALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             TTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCcceEE------EecCcCccHHHHHHHHHHHHHH
Confidence            4566665      7899999999999998766544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.8e-17  Score=127.94  Aligned_cols=165  Identities=18%  Similarity=0.103  Sum_probs=95.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .++|+|+|.+|+|||||++++++....+......+.+...............+.+|||||...           ......
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~   70 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGV   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHH
Confidence            378999999999999999999876643322222222222211111111234678999999543           222334


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      .....++++++|+|.+++.+-.. ..++..+.......  ...|++++.||+|+...  .....      ......+...
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~--~~~v~------~~~~~~~~~~  142 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVS------EKSAQELAKS  142 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCSC------HHHHHHHHHH
T ss_pred             HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh--hcchh------HHHHHHHHHH
Confidence            45788899999999985444333 34445554433221  23399999999997643  11100      0112344455


Q ss_pred             cC-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+ .+++.      +||+++.|+++++..|.+.+
T Consensus       143 ~~~~~~~e------~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         143 LGDIPLFL------TSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             TTSCCEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCeEEE------EeCCCCcCHHHHHHHHHHHH
Confidence            54 34555      79999999999999886543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-17  Score=127.57  Aligned_cols=159  Identities=19%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      .+|+|+|.+|+|||||++++.+....+........+.  ...... ......+.+|||||...           +.....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF--GSKIINVGGKYVKLQIWDTAGQER-----------FRSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE--EEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce--eeEEEEecCcceeEEEEECCCchh-----------hhhhHH
Confidence            6899999999999999999986654222211111111  111111 11234678999999443           222334


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      ..+..++++++|+|.+++-+... ..++..+....+.+.  |++++.||+|......... +        ....+....+
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piivv~nK~D~~~~~~~~~-~--------~~~~~~~~~~  141 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI--VIILCGNKKDLDADREVTF-L--------EASRFAQENE  141 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCH-H--------HHHHHHHHTT
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCce--EEEEEEecccccchhchhh-h--------HHHHHHHhCC
Confidence            45788999999999984332222 234444444444333  9999999999653311111 1        1233444556


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+++.      +||+++.|+++++.++.+.+
T Consensus       142 ~~~~e------~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         142 LMFLE------TSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             CEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEE------eeCCCCcCHHHHHHHHHHHH
Confidence            66665      78899999999998886654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.7e-17  Score=127.05  Aligned_cols=160  Identities=21%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++.+......-......+..  ..... .+  ...+.+|||+|......           .
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~--~~~~~-~~~~~~~~~i~d~~g~~~~~~-----------~   69 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQ-YQNELHKFLIWDTAGLERFRA-----------L   69 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEE-ETTEEEEEEEEEECCSGGGGG-----------G
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc--ccccc-ccccccceeeeecCCchhhhH-----------H
Confidence            478999999999999999999976653222111111111  11111 22  23567999999665321           1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                      ...++.+++++++|+|++++-+-.. ..++..+.......  .|+++|.||+|+........+         ..+.+...
T Consensus        70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~---------~~~~~~~~  138 (167)
T d1z0ja1          70 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER---------DAKDYADS  138 (167)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred             HHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccccchhHH---------HHHHHHHH
Confidence            1223567799999999984433333 23344444444433  399999999997543111111         13445566


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+..++.      +||+++.++++++..|.+.++
T Consensus       139 ~~~~~~e------~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         139 IHAIFVE------TSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             TTCEEEE------CBTTTTBSHHHHHHHHHHHCC
T ss_pred             cCCEEEE------EecCCCCCHHHHHHHHHHhCC
Confidence            6666665      899999999999999877653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.6e-16  Score=122.64  Aligned_cols=159  Identities=19%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +.++|+|+|.+|+|||||++++++..... .   ..+|...........++.  .+.+|||||........         
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~-~---~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~---------   69 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVD-S---YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP---------   69 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCS-C---CCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC---------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCc-c---cCcceecccceEEecCcEEEEeeeccccccccccccc---------
Confidence            34799999999999999999998655322 1   122222222222224554  56789999977643321         


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                        ...+..+|++++|+|++++-+-.. ..++..+.+..+.. ..|++++.||+|+........++         ...+..
T Consensus        70 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~---------~~~~a~  137 (167)
T d1xtqa1          70 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEE---------GKALAE  137 (167)
T ss_dssp             --GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             --chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHH---------HHHHHH
Confidence              234678899999999985444433 33445555544432 23899999999975431111221         234455


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..+..++.      +||+++.++++++..+...
T Consensus       138 ~~~~~~~e------~Sak~~~~v~~~f~~li~~  164 (167)
T d1xtqa1         138 SWNAAFLE------SSAKENQTAVDVFRRIILE  164 (167)
T ss_dssp             HHTCEEEE------CCTTCHHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EecCCCCCHHHHHHHHHHH
Confidence            55666665      8999999999999887554

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.2e-16  Score=120.91  Aligned_cols=161  Identities=17%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||++++++... .....+..  ....... ...++.  .+.+|||+|........       ..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~--~~~~~~~-~~~~~~~~~l~~~d~~g~~~~~~~~-------~~   73 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTI--EDSYTKI-CSVDGIPARLDILDTAGQEEFGAMR-------EQ   73 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTC--CEEEEEE-EEETTEEEEEEEEECCCTTTTSCCH-------HH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCC-Cccccccc--ccceeeE-eccCCeeeeeecccccccccccccc-------ch
Confidence            458999999999999999999986554 22221111  1111122 224544  56789999987754322       11


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      +    +..+|++++|+|.+++.+... ..++..+....+ ...  |+++|.||+|+........++         ...+.
T Consensus        74 ~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~--p~ilvgnK~Dl~~~~~~~~~~---------~~~~~  138 (173)
T d2fn4a1          74 Y----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLVGNKADLESQRQVPRSE---------ASAFG  138 (173)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCC--CEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             h----hccceeeeeecccccccccchhhhhhHHHHHHhccCCC--ceEEEEEeechhhccccchhh---------hhHHH
Confidence            2    234599999999985444443 344444444332 233  899999999975331011111         34455


Q ss_pred             HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ...+..++.      +||+++.|++++++.+.+.+..
T Consensus       139 ~~~~~~~~e------~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         139 ASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             HHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence            555666665      8999999999999999877654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-16  Score=122.83  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++........ .............. .++.  .+.+|||||....           ....
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e~~-----------~~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQERF-----------RSVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc-cceeeeeeEEEEEE-ecCcEEEEEEEECCCchhh-----------HHHH
Confidence            689999999999999999987655322221 11112222222222 3444  6789999995442           2223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|.+++-+... ..++..+....+...  |++++.||+|.........++         ...+....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~~k~d~~~~~~v~~~~---------~~~~~~~~  142 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV--ALMLLGNKVDSAHERVVKRED---------GEKLAKEY  142 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECCSTTSCCCSCHHH---------HHHHHHHH
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCc--eEEEEEeeechhhcccccHHH---------HHHHHHHc
Confidence            345677899999999984433333 233333334333333  899999999976541111111         33455566


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +|++++.|+++++..|.+.+
T Consensus       143 ~~~~~e------~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         143 GLPFME------TSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             TCCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEE------EeCCCCcCHHHHHHHHHHHc
Confidence            777777      88999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.2e-17  Score=126.31  Aligned_cols=159  Identities=18%  Similarity=0.155  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++...........+.+.  ...... ..+  ..+.+|||||.....           ...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~--~~~~~~-~~~~~~~~~~~d~~g~~~~~-----------~~~   72 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVC-LDDTTVKFEIWDTAGQERYH-----------SLA   72 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEE-ETTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccccc--ccceee-ccceEEEEEeccCCCchhhh-----------hhH
Confidence            6899999999999999999996654222222222221  111112 233  467899999965421           111


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..+++.++++++|+|.+++-+... ..++..+......+.  |++++.||+|+......+.++         ...+....
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~v~~e~---------~~~~~~~~  141 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDN  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccccccccHHH---------HHHHHHhc
Confidence            223567899999999984443333 345555555555444  899999999975431111111         23445555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      +||+++.++++++..|.+.+.
T Consensus       142 ~~~~~e------~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         142 SLLFME------TSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCEEEE------CCTTTCTTHHHHHHHHHHTSC
T ss_pred             CCEEEE------eeCCCCCCHHHHHHHHHHHHh
Confidence            666666      899999999999999876554

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-16  Score=123.47  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++...........  +.......+. .++.  .+.+|||||..++....           
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~i~d~~g~e~~~~~~-----------   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--GVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRIT-----------   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCC--SCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccc--cceeeeEEEE-ECCEEEEEEecccCCcHHHHHHH-----------
Confidence            689999999999999999998766433322222  2222222222 3443  67899999965533221           


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..++++++|+|.+++-+-.. ..++..+....+..+  |+++|.||+|.........+.         ........
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~~~~~~~~---------~~~~~~~~  139 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHLRAVPTDE---------ARAFAEKN  139 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccccccchHHH---------HHHhhccc
Confidence            112456799999999984433332 445566666555444  999999999976431111111         22334455


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +|++++.|++++++.+...+
T Consensus       140 ~~~~~e------~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         140 NLSFIE------TSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             TCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEEE------EecCCCcCHHHHHHHHHHHH
Confidence            666766      78889999999988876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.3e-17  Score=127.31  Aligned_cols=159  Identities=15%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++........  ...+.......+. .++.  .+.+|||||....           ....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~e~~-----------~~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIE-LDGKRIKLQIWDTAGQERF-----------RTIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEE-ETTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEE-ECCEEEEEEEEECCCchhh-----------HHHH
Confidence            689999999999999999999765422111  1112222222333 3443  5678999994432           2223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++.++|++++|+|++++.+-.. ..++..+......+.  |++++.||.|.........++         ........
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~~k~D~~~~~~~~~~~---------~~~~~~~~  141 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV--EKMILGNKCDVNDKRQVSKER---------GEKLALDY  141 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEEC--CCSCCCSCHHH---------HHHHHHHH
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCc--eEEEEEecccchhhcccHHHH---------HHHHHHhc
Confidence            345788999999999985544443 334455544444333  999999999976541111111         22334455


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +.+++.      +|++++.|+.+++.+|.+.+.
T Consensus       142 ~~~~~e------~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         142 GIKFME------TSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             TCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence            677776      888999999999999876654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=9.2e-17  Score=140.57  Aligned_cols=175  Identities=17%  Similarity=0.107  Sum_probs=106.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||+|+|+|......+....+  .|+... ..+...+...+++|||||+.......+....    
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~-~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~----  129 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLE----  129 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEEECSSCTTEEEEECCCGGGSSCCHHHHHH----
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee-eeeeccCCCeEEEEeCCCcccccccHHHHHH----
Confidence            358999999999999999999999776544433322  223221 2233356667999999999876554433222    


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc-------cccHHHHhcccCCch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-------EKTLEDFLGHECPKP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-------~~~~~~~~~~~~~~~  168 (301)
                      ..  .....|.++++.+  .+++..+...++.+... +.    |+++|+||+|....+       ....+..+.. ....
T Consensus       130 ~~--~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~k----~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~~  199 (400)
T d1tq4a_         130 KM--KFYEYDFFIIISA--TRFKKNDIDIAKAISMM-KK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRLN  199 (400)
T ss_dssp             HT--TGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-TC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHHH
T ss_pred             Hh--hhhcceEEEEecC--CCCCHHHHHHHHHHHHc-CC----CEEEEEeCcccccchhhhcccccccHHHHHHH-HHHH
Confidence            11  2334577777765  47889998888888764 43    999999999954110       0111222221 1111


Q ss_pred             HHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          169 LKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       169 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      ....+...   ..+++++++...    ...++..|.+.+.+.++..
T Consensus       200 ~~~~l~~~~~~~~~vflvS~~~~----~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         200 CVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHcCCCCCCEEEecCCcc----cccCHHHHHHHHHHHhHHH
Confidence            22333332   245566544322    2358899999998887653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.70  E-value=3.4e-17  Score=128.32  Aligned_cols=163  Identities=16%  Similarity=0.111  Sum_probs=99.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .+..+|+++|.+|||||||++++.+.......+     |........ ...+..+.+|||||......           .
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----------~   77 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETL-SYKNLKLNVWDLGGQTSIRP-----------Y   77 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEE-EETTEEEEEEEEC----CCT-----------T
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ccceEEEEE-eeCCEEEEEEecccccccch-----------h
Confidence            456899999999999999999998776532221     111122222 25778899999999655321           2


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....+..++++++|+|.+++.+..+ ..++..+ ......  ..|++++.||+|+...  ....+.... ..      +.
T Consensus        78 ~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~--~~piliv~NK~Dl~~~--~~~~~i~~~-~~------~~  146 (182)
T d1moza_          78 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGA--LSASEVSKE-LN------LV  146 (182)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTC--CCHHHHHHH-TT------TT
T ss_pred             HHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccC--CcceEEEEEeeccccc--cCHHHHHHH-HH------HH
Confidence            2335678899999999986666554 3333332 222112  2399999999998654  233322221 00      01


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ....+.+.|   .++||+++.|+++++++|.+.+.+
T Consensus       147 ~~~~~~~~~---~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         147 ELKDRSWSI---VASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             TCCSSCEEE---EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHhhCCCEE---EEEECCCCCCHHHHHHHHHHHHHH
Confidence            111111111   238999999999999999877654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5.7e-16  Score=121.35  Aligned_cols=174  Identities=13%  Similarity=0.185  Sum_probs=101.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (301)
                      |.+..++|+|+|++|||||||+|+|++........  ...++...........+......++++................
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS--KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeec--ccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            45567999999999999999999999977533222  1222222222223345555555555554444333333222233


Q ss_pred             HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ............++.+.+............+..+... ..    ++++++||+|....  .........     +.+.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~  157 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-NI----AVLVLLTKADKLAS--GARKAQLNM-----VREAVL  157 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred             hhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-cc----cccchhhhhhccCH--HHHHHHHHH-----HHHHHH
Confidence            3333334455677777777767777776666666553 22    78999999998866  445444444     444444


Q ss_pred             HcCC--ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ....  ++++      +||+++.|+++|++.|..++
T Consensus       158 ~~~~~~~~i~------vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         158 AFNGDVQVET------FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GGCSCEEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             hhCCCCcEEE------EeCCCCCCHHHHHHHHHHHh
Confidence            4432  3343      79999999999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.8e-17  Score=126.88  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      .++|+|+|.+|+|||||++++++.........  ..+.......+. .++  ..+.+|||||.......       .   
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~-------~---   73 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAA--TIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRTL-------T---   73 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCCS-------H---
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCcccc--ceeecceeEEEE-EeccccEEEEEECCCchhhHHH-------H---
Confidence            37899999999999999999997664222222  222222222222 333  46899999997653221       1   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ..++.++|++++|+|++++.+... ..++..+... ......|++++.||.|..... ....+         ...+...
T Consensus        74 -~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~~-v~~~~---------~~~~~~~  141 (177)
T d1x3sa1          74 -PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENRE-VDRNE---------GLKFARK  141 (177)
T ss_dssp             -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSCC-SCHHH---------HHHHHHH
T ss_pred             -HHHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeecccccccc-ccHHH---------HHHHHHH
Confidence             112457799999999884332222 2333333332 223334889999999965431 11111         3345556


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+..++.      +||+++.|++++++++.+.+.++
T Consensus       142 ~~~~~~e------~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         142 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             TTCEEEE------CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             CCCEEEE------EeCCCCCCHHHHHHHHHHHHccC
Confidence            6666666      88999999999999887766543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.69  E-value=3e-16  Score=121.19  Aligned_cols=159  Identities=20%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||+|++++... ....   .+|...........++.  .+.+|||||....    ..+..   . 
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f-~~~~---~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~----~~~~~---~-   71 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDY---EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----AAIRD---N-   71 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CSCC---CTTCCEEEEEEEEETTEEEEEEEEECCC---C----HHHHH---H-
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC-Cccc---CCccccccccccccccccccccccccccccch----hhhhh---h-
Confidence            47899999999999999999986553 2221   12222221111224444  6688999997653    11111   1 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         .+..+|++++|+|.+++.+... ..++..+....+. ...|+++|.||+|.........++         ...+...
T Consensus        72 ---~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~~---------~~~~~~~  138 (168)
T d1u8za_          72 ---YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRADQ  138 (168)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ---cccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHHH---------HHHHHHH
Confidence               2334599999999985444433 3344445444322 123899999999965331111111         3345555


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+.+++.      +||+++.|+++++..+.+.+
T Consensus       139 ~~~~~~e------~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         139 WNVNYVE------TSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             HTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence            5666666      89999999999999876544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.9e-17  Score=123.94  Aligned_cols=160  Identities=19%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|||||||+|++++......-.    .+............+  ..+.+||+||.....    .   ..   
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~---~~---   68 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A---MR---   68 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEEETTEEEEEEEEEECCCGGGH----H---HH---
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccC----CccceeeccceeeeceeeeeeeeeccCccccc----c---ch---
Confidence            3789999999999999999999766422211    222221111122333  467899999966531    1   11   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                       ...+..++++++|+|.+++.+-.. ..++..+....+.+ ..|++++.||+|+...  ....+.        ...+...
T Consensus        69 -~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~  136 (166)
T d1ctqa_          69 -DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAAR--TVESRQ--------AQDLARS  136 (166)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred             -hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccc--cccHHH--------HHHHHHH
Confidence             112345599999999985544433 44555555544322 2389999999997543  111111        2344555


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .+.+++.      +||+++.|+++++..+.+.+.+
T Consensus       137 ~~~~~~e------~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         137 YGIPYIE------TSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HTCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hCCeEEE------EcCCCCcCHHHHHHHHHHHHHh
Confidence            5666766      8999999999999998776643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=122.23  Aligned_cols=158  Identities=15%  Similarity=0.094  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++....+......  +......... ..+  ..+.+||++|........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~-----------   69 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--GVEFGARMVN-IDGKQIKLQIWDTAGQESFRSIT-----------   69 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----C--CSSEEEEEEE-ETTEEEEEEEECCTTGGGTSCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccce--eeccceeeee-eeeeEEEEEeecccCccchhhHH-----------
Confidence            689999999999999999998766433322222  2222222222 333  477999999976543321           


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ...+..+|++++|+|++++-+-.. ..++..+....+.+.  |++++.||+|.........+         ....+....
T Consensus        70 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~~~~~~~---------~~~~~a~~~  138 (173)
T d2a5ja1          70 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRDVKRE---------EGEAFAREH  138 (173)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH---------HHHHHHHHH
T ss_pred             HHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhhhhhHHH---------HHHHHHHHc
Confidence            112456799999999985444433 345555666555444  99999999996543111111         133444555


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      +.+++.      +||+++.|+++++..+.+.+
T Consensus       139 ~~~~~e------~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         139 GLIFME------TSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             TCEEEE------ECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEE------ecCCCCCCHHHHHHHHHHHH
Confidence            666665      89999999999998886654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=121.46  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=97.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++++........    .|...........++  ..+.+||++|.....    .   .... 
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----~---~~~~-   70 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----S---MRDL-   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHHH-
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccC----CceeeeeeeeeecCcceEeeccccCCCccccc----c---chHH-
Confidence            4789999999999999999999766432221    122111111122344  367889999966521    1   1111 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         .+.+++++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+........++         ...+...
T Consensus        71 ---~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T d1kaoa_          71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSE---------GRALAEE  137 (167)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ---HhhcccceeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhcccchHHH---------HHHHHHH
Confidence               2345599999999985444443 3333334332221 223899999999976431111111         2233444


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+.+++.      +||+++.|+++++..+.+.+
T Consensus       138 ~~~~~~e------~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         138 WGCPFME------TSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             HTSCEEE------ECTTCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEE------ECCCCCcCHHHHHHHHHHHH
Confidence            5666665      89999999999999887655

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.8e-16  Score=122.48  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh-
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG-   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~-   98 (301)
                      ..|+|+|.+|+|||||+|+|+|.....  .+..+.|+..........+...+.++|+||.....      ......... 
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~   77 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE------KRAINRLMNK   77 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH------HHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceecc------hhhhhhhhhh
Confidence            569999999999999999999987632  33344455444444454677788889999976521      111122221 


Q ss_pred             ---ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           99 ---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        99 ---~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                         .....+++++++.+.. +...........+.+.   .  .|.++++||+|..... ..+...        ...+...
T Consensus        78 ~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~---~--~~~i~v~~k~d~~~~~-~~~~~~--------~~~~~~~  142 (179)
T d1egaa1          78 AASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREG---K--APVILAVNKVDNVQEK-ADLLPH--------LQFLASQ  142 (179)
T ss_dssp             CTTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS---S--SCEEEEEESTTTCCCH-HHHHHH--------HHHHHTT
T ss_pred             ccccchhhcceeEEEEecC-ccchhHHHHHHHhhhc---c--Cceeeeeeeeeccchh-hhhhhH--------hhhhhhh
Confidence               2235678888888887 4444444444444332   2  2789999999977551 112211        2233333


Q ss_pred             cC-CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188          176 CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (301)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  211 (301)
                      .+ ..+++      .||+++.|+++|++.|.+.+++.
T Consensus       143 ~~~~~~~~------vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         143 MNFLDIVP------ISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             SCCSEEEE------CCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             cCCCCEEE------EeCcCCCCHHHHHHHHHHhCCCC
Confidence            34 24444      78999999999999998888663

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.8e-16  Score=121.62  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||++++++.......    .+|...........++  ..+.+|||||.....           ...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGLEDYD-----------RLR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TTG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCc----CCceeeeccccccccccceeeeccccCccchhc-----------ccc
Confidence            68999999999999999999876542221    2222222211122333  368999999965432           223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----C-CchHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~-~~~l~  170 (301)
                      ..++.++|++++|+|++++-+-..  ..++..+... +.+.  |++++.||+|....  ....+.....    . .....
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~~  142 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNV--PIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR  142 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHHH
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCC--ceEEeeecccccch--hhHHHHHHHhhcccccHHHHH
Confidence            445788999999999985433332  2344444443 3334  99999999998654  2222211100    0 01123


Q ss_pred             HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+....+. .++.      +||+++.|++++++.+.+.+
T Consensus       143 ~~a~~~~~~~~~E------~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         143 DMANRIGAFGYME------CSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHH
Confidence            44455553 4554      89999999999999887653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-15  Score=117.36  Aligned_cols=162  Identities=22%  Similarity=0.159  Sum_probs=97.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ...+|+|+|.+|+|||||++++++.... ....   +|...........++  ..+.+|||||......       ....
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~---~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~   72 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFV-TDYD---PTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA-------MREQ   72 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCC-SSCC---TTCCEEEEEEEEETTEEEEEEEEECC----CCH-------HHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCC-cccC---cccccceeeeeeecccccccccccccccccccc-------cccc
Confidence            3478999999999999999999875532 2211   121111111122344  3679999999776421       1111


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      .    +..+|++++|+|.+++-+-.. ..++..+....+. ...|+++|.||+|.........++         ...+..
T Consensus        73 ~----~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~~~---------~~~~~~  138 (171)
T d2erya1          73 Y----MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQRQVTQEE---------GQQLAR  138 (171)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTSCSSCHHH---------HHHHHH
T ss_pred             c----ccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhhccchHHH---------HHHHHH
Confidence            2    234599999999985433333 2333333333322 123899999999976441111111         344556


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +||+++.|+++++..|.+.+..
T Consensus       139 ~~~~~~~e------~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         139 QLKVTYME------ASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             HTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EcCCCCcCHHHHHHHHHHHHHH
Confidence            66777665      8999999999999999877654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.2e-17  Score=124.48  Aligned_cols=159  Identities=15%  Similarity=0.149  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+++|.+|+|||||++++++...........+  .......+. .++  ..+.+|||||........           
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~--~~~~~~~i~-~~~~~~~~~i~Dt~G~~~~~~~~-----------   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--IDFKIKTVD-INGKKVKLQIWDTAGQERFRTIT-----------   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccc--eeEEEEEEE-ECCEEEEEEEEECCCchhhHHHH-----------
Confidence            6899999999999999999987664322221112  222222222 334  356789999954432211           


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      ..++..++++++|+|.+++-+..... ++..+......  ..|++++.+|.|....  ....+.        ...+....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~--~~~~~~--------~~~~~~~~  136 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTADQ--------GEALAKEL  136 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHHH--------HHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh--hhhHHH--------HHHHHHhc
Confidence            12346779999999999543333322 23333333222  2388999999987644  222221        33455556


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +.+++.      +|++++.+++++++.+.+.+.+
T Consensus       137 ~~~~~~------~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         137 GIPFIE------SSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             TCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEEE------ECCCCCCCHHHHHHHHHHHHHh
Confidence            777776      8899999999999998876643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-15  Score=116.51  Aligned_cols=158  Identities=18%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++.+..... .   ..+|...........++  ..+.+|||||.....        ....+
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~-~---~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~   69 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIW-E---YDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QREGH   69 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCS-C---CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC-c---cCCceeccccccccccccceEEEEeecccccccc--------cchhh
Confidence            3789999999999999999999765322 1   22233322222222444  367899999976531        11122


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (301)
                          +.+++++++|+|++++-+..... ++........ ....|+++|.||+|+........++         ...+...
T Consensus        70 ----~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e---------~~~~a~~  135 (168)
T d2atva1          70 ----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLATE  135 (168)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ----hcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHH---------HHHHHHH
Confidence                33459999999999554444432 2233333222 1123999999999975431011111         2344555


Q ss_pred             cCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~  208 (301)
                      .+.+++.      +||+++. ++++++..+.+.+
T Consensus       136 ~~~~~~e------~Saktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         136 LACAFYE------CSACTGEGNITEIFYELCREV  163 (168)
T ss_dssp             HTSEEEE------CCTTTCTTCHHHHHHHHHHHH
T ss_pred             hCCeEEE------EccccCCcCHHHHHHHHHHHH
Confidence            5666665      7888887 4999998876554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-15  Score=116.31  Aligned_cols=163  Identities=20%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      -.+|+|+|.+|+|||||++++++.... .....+.+.......  +. .++.  .+.+||+|+...     +   +++  
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~~~d~~~~~g-----~---e~~--   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERT--LM-VDGESATIILLDMWENKG-----E---NEW--   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEE--EE-ETTEEEEEEEECCTTTTH-----H---HHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceee--ec-cCCceeeeeeeccccccc-----c---ccc--
Confidence            378999999999999999999976532 222112222222111  12 3343  568899887432     1   122  


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ....++..+|++++|+|++++-+-.. ..++..+....+. ...|+++|.||+|+........++         ...+..
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~  139 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRCREVSVSE---------GRACAV  139 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEeccccccccccccHHH---------HHHHHH
Confidence            22345789999999999984433333 2333334332221 123999999999975431112221         233445


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..+.+++.      +||+++.|+++++..+.+.+..
T Consensus       140 ~~~~~~~e------~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         140 VFDCKFIE------TSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             HHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence            55666665      8999999999999998776543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.1e-16  Score=123.93  Aligned_cols=161  Identities=19%  Similarity=0.145  Sum_probs=99.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++++...........+.  ......+. ..+  ..+.+|||+|......        +   
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~--~~~~~~i~-~~~~~~~l~i~d~~g~~~~~~--------~---   68 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA--AFLTQRVT-INEHTVKFEIWDTAGQERFAS--------L---   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEE-ETTEEEEEEEEEECCSGGGGG--------G---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccc--eeeccccc-cccccccccccccCCchhHHH--------H---
Confidence            378999999999999999999877653322211121  11112222 333  4789999999655211        1   


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCcc-ccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~~  174 (301)
                      ...++..+|++++|+|.+++.+.... .++..+.......  .|++++.||+|...... ..+..       .....+..
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~~~~~~~v~~-------~~~~~~~~  139 (170)
T d1ek0a_          69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQEGGERKVAR-------EEGEKLAE  139 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCH-------HHHHHHHH
T ss_pred             HHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeecccccccccchhhhhH-------HHHHHHHH
Confidence            11235677999999999955444442 3333333333332  38999999999754310 01100       11234555


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+++.      +||+++.|+++++..|.+.+
T Consensus       140 ~~~~~~~e------~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         140 EKGLLFFE------TSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred             HcCCEEEE------ecCCCCcCHHHHHHHHHHHh
Confidence            66777776      89999999999999886544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.5e-15  Score=115.14  Aligned_cols=161  Identities=22%  Similarity=0.168  Sum_probs=100.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+++|.+|+|||||++++++....+..    .+|...........++  ..+.+||++|........       ..
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~   71 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR-------EQ   71 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH-------HH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCccc----Ccceeeccccccccccccccccccccccccccccch-------hh
Confidence            3489999999999999999999876542221    1122111112222344  467899999976643321       11


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                          +++++|++++|+|++++-+-.. ..++..+.+..+. ...|++++.||+|+........++         ..++..
T Consensus        72 ----~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e~---------~~~~~~  137 (169)
T d1x1ra1          72 ----YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEMAT  137 (169)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHHHH
T ss_pred             ----hhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehhh---------HHHHHH
Confidence                2345599999999985444433 3455555544332 223899999999976541111121         334556


Q ss_pred             HcCCceEEecCCCcccccchh-HHHHHHHHHHHHHh
Q 022188          175 LCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV  209 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~  209 (301)
                      ..+.+++.      +||+++. |+++++..+.+.+.
T Consensus       138 ~~~~~~~e------~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         138 KYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             HHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EcCCCCCcCHHHHHHHHHHHHH
Confidence            66777776      7887765 99999998876553

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.8e-16  Score=121.14  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEee-----------CCeeEEEEeCCCCCCCCCCc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK-----------DGQVVNVIDTPGLFDLSAGS   86 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~-----------~~~~~~liDtPG~~~~~~~~   86 (301)
                      .+|+|+|.+|+|||||++++++.......    ..+....  .......           ....+.+|||||..      
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e------   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKF----ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEE----EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCcc----CCcccceeeEEEEEEecccccccccccceEEeccccCCcch------
Confidence            78999999999999999999976542221    1111111  1111111           12467899999921      


Q ss_pred             HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (301)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~  164 (301)
                           ++......++.++|++++|+|++++.+...  ...++.+....  ....|+++|.||.|+...  ..+..     
T Consensus        76 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~-----  141 (186)
T d2f7sa1          76 -----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE-----  141 (186)
T ss_dssp             -----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH-----
T ss_pred             -----hhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhh--hcchH-----
Confidence                 222333334678899999999984332222  22233322111  112388999999997643  11111     


Q ss_pred             CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                        .....+....+.+++.      +||+++.+++++++.+.+.+
T Consensus       142 --~e~~~~~~~~~~~~~e------~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         142 --RQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             --HHHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence              1134556666777776      88999999999999987754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-15  Score=120.04  Aligned_cols=165  Identities=19%  Similarity=0.091  Sum_probs=99.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ..++|+|+|.+|+|||||+++++.... .....   +|............+  ..+.+|||||......           
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~---~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~-----------   72 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYV---PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------   72 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCC---CSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-----------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCC-CCcCC---CceeeeeeEEEeeCCceEEeecccccccchhhh-----------
Confidence            347999999999999999999987553 22211   122111111111233  4678999999655322           


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC-----ch
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KP  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~-----~~  168 (301)
                      ....++.++|++++|+|++++-+-..  ..+...++.. ....  |+++|.||+|+.+.  ............     +.
T Consensus        73 ~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~--~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~~~~  147 (185)
T d2atxa1          73 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNV--PFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ  147 (185)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTC--CEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred             hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCC--CeeEeeeccccccc--hhhhhhhhhcccccccHHH
Confidence            12335778899999999985443332  2344444444 3333  89999999998754  222221111000     11


Q ss_pred             HHHHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+....+ ..++.      +||+++.|++++++.+.+.+
T Consensus       148 ~~~~a~~~~~~~~~E------~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         148 GQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEE------ecCCCCcCHHHHHHHHHHHH
Confidence            233444445 34554      79999999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8e-16  Score=118.29  Aligned_cols=158  Identities=13%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+|+|.+|+|||||++++++...........+......... .......+.++|++|....          ......
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD-IDGERIKIQLWDTAGQERF----------RKSMVQ   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE-ETTEEEEEEEEECCCSHHH----------HTTTHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeee-eeccceEEEEEeccCchhh----------ccccce
Confidence            36899999999999999999987664333332222222222221 1123456789999994331          011112


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .++.++|++++|+|++++-+-.. ..++..+.+... ...  |+++|.||.|+........++         ...+....
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~--pi~lvgnK~Dl~~~~~v~~~~---------~~~~~~~~  139 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI--PRILVGNKCDLRSAIQVPTDL---------AQKFADTH  139 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCC--CEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCC--eEEEEeccccchhccchhHHH---------HHHHHHHC
Confidence            23567899999999985544444 345555544332 233  999999999976441111111         23455666


Q ss_pred             CCceEEecCCCcccccc---hhHHHHHHHHH
Q 022188          177 DNRCVLFDNKTKDEAKG---TEQVRQLLSLV  204 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~---~~~~~~L~~~l  204 (301)
                      +.+++.      +||++   +.++++++..|
T Consensus       140 ~~~~~e------~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         140 SMPLFE------TSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             TCCEEE------CCSSSGGGGSCHHHHHHHH
T ss_pred             CCEEEE------EecccCCcCcCHHHHHHHh
Confidence            666665      67765   45888888765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.1e-16  Score=122.25  Aligned_cols=160  Identities=15%  Similarity=0.068  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ++|+|+|.+|||||||++++++.........+.+.+...  ..... .....+.++||||.......           ..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVMVDDRLVTMQIWDTAGQERFQSL-----------GV   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE--EEEESSSCEEEEEEEEECSSGGGSCS-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeee--eeeeeCCceEEEEeeecCCccccccc-----------cc
Confidence            689999999999999999999766422211111222211  11221 12346789999996553221           12


Q ss_pred             ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH-H
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-Q  174 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~  174 (301)
                      .....+|++++++|.+++-+... ..++..+.......  ...|+++|.||+|+...  ....+.        ...+. .
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~  139 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWCYS  139 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHHHH
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHH--------HHHHHHH
Confidence            23567799999999974333222 23444444432211  12389999999997543  111111        12222 2


Q ss_pred             HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ..+.+++.      +||+++.|+.++++++.+.+
T Consensus       140 ~~~~~~~e------~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         140 KNNIPYFE------TSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             TTSCCEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             hcCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence            23455665      79999999999999876543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.64  E-value=2.6e-15  Score=120.54  Aligned_cols=156  Identities=13%  Similarity=0.109  Sum_probs=99.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c-----------------CCCCCcceeeEeEEEEee
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------AGSSGVTKTCEMKTTVLK   66 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~~~   66 (301)
                      ..++|+++|+.++|||||+++|+.......              +                 ....+.|.......+. +
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~   86 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-T   86 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-C
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe-c
Confidence            457899999999999999999963211000              0                 0001223333333333 5


Q ss_pred             CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      .++.+.++||||..++       ...+...+    ..+|++++|+|+..++..+..+.+..+... |.+   ++++++||
T Consensus        87 ~~~~~~iiD~PGH~df-------v~~~~~g~----~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~vNK  151 (222)
T d1zunb3          87 AKRKFIIADTPGHEQY-------TRNMATGA----STCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINK  151 (222)
T ss_dssp             SSEEEEEEECCCSGGG-------HHHHHHHH----TTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEEC
T ss_pred             cceEEEEEeccchhhh-------hhhhcccc----ccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEEEc
Confidence            7789999999998774       23444444    455999999999989999888877766654 543   68999999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHcCCc--eEEecCCCcccccchhHH
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--CVLFDNKTKDEAKGTEQV  197 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  197 (301)
                      +|....+...+......     +..++...+..  -++|   .++||..|.++
T Consensus       152 ~D~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~i~~---IPiSA~~G~ni  196 (222)
T d1zunb3         152 MDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNV  196 (222)
T ss_dssp             TTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTT
T ss_pred             cccccccceehhhhHHH-----HhhhhHhhccCCCceEE---EEEEcccCccC
Confidence            99876533444444444     66666665532  1222   12566666655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=115.52  Aligned_cols=157  Identities=11%  Similarity=0.015  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|++|||||||+|+|++..........     ..... ........+.++|+||....           ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~d~~g~~~~-----------~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-----GFNVE-TVEYKNISFTVWDVGGQDKI-----------RPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS-----SCCEE-EEECSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccce-----eeEEE-EEeeeeEEEEEecCCCcccc-----------hhhhhh
Confidence            47999999999999999999977653322111     11111 12256678899999996652           111223


Q ss_pred             cCCCccEEEEEEecCCCCCHHHH-HHH-HHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEE-TAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~-~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (301)
                      .+...+++++++|..++.+.... .++ +.+.....  ...|++++.||.|....  ....+.... ..   .......+
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~k~d~~~~--~~~~~i~~~-~~---~~~~~~~~  135 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEITDK-LG---LHSLRHRN  135 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCSSCC
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcc--cCceEEEEeeccccccc--ccHHHHHHH-HH---HHHHhhCC
Confidence            35677999999999854443332 222 22222222  22389999999997755  223222211 00   01111222


Q ss_pred             CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                      ..+++      +||++|.|+++++++|.+.
T Consensus       136 ~~~~~------~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         136 WYIQA------TCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EEEEE------CBTTTTBTHHHHHHHHHHH
T ss_pred             CEEEE------eECCCCCCHHHHHHHHHhc
Confidence            33333      8999999999999998654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.62  E-value=4.4e-15  Score=115.27  Aligned_cols=162  Identities=15%  Similarity=0.052  Sum_probs=95.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++..+|+|+|.+|||||||+|+|.+.......... + ..   ..... ..+..+.++|++|.......           
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~-~~---~~~~~-~~~~~~~~~d~~~~~~~~~~-----------   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-G-SN---VEEIV-INNTRFLMWDIGGQESLRSS-----------   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-C-SS---CEEEE-ETTEEEEEEECCC----CGG-----------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-c-ee---EEEEe-ecceEEEEeccccccccccc-----------
Confidence            34589999999999999999999998764332221 1 11   11122 56778899999986543221           


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH-HHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK-EILQL  175 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~-~~~~~  175 (301)
                      .......+++++++++.++..+....................|++++.||.|....  ....+....     +. .....
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~-----~~~~~~~~  148 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQF-----LKLTSIKD  148 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCCS
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHH-----HHHHhhHh
Confidence            11123466999999999855444432221111111111123499999999997655  332222111     00 00111


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .+.+++.      +||+++.|+++++++|.+.+
T Consensus       149 ~~~~~~~------~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         149 HQWHIQA------CCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             SCEEEEE------CBTTTTBTHHHHHHHHHHHH
T ss_pred             cCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence            2233444      89999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-15  Score=116.67  Aligned_cols=165  Identities=17%  Similarity=0.086  Sum_probs=98.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      ..++|+|+|.+|+|||||++++++........    .|...........++  ..+.+||++|.....           .
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~----~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~   68 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R   68 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-----------T
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccc----cceeeceeeeeeccCcceEEEeecccccccch-----------h
Confidence            45899999999999999999999766422221    122111111111333  356899999955422           2


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc--CCc---h
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CPK---P  168 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~--~~~---~  168 (301)
                      ....++..+|++++|+|++++-+-..  ..++..+... ..+.  |+++|.||+|+...  ....+.....  ...   .
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~~  143 (183)
T d1mh1a_          69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNT--PIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  143 (183)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCC--cEEEEeecccchhh--hhhhhhhhhccccchhhHH
Confidence            22345788899999999985443333  2244444443 3333  99999999997644  2221111110  000   1


Q ss_pred             HHHHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          169 LKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       169 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ...+....+ ..++.      +||+++.+++++|..+.+.+
T Consensus       144 ~~~~a~~~~~~~~~E------~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         144 GLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCceEEE------cCCCCCcCHHHHHHHHHHHH
Confidence            123334444 34444      89999999999999887654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.2e-15  Score=114.30  Aligned_cols=161  Identities=19%  Similarity=0.082  Sum_probs=96.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+|+|.+|+|||||+|++++.........+.+.  ........ .++  ..+.+|||||....           ..
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~i~d~~g~~~~-----------~~   70 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV--EFLNKDLE-VDGHFVTMQIWDTAGQERF-----------RS   70 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSE--EEEEEEEE-ETTEEEEEEEEECCCCGGG-----------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceee--eeeeeeee-ecCceeeEeeecccCccee-----------hh
Confidence            3468999999999999999999875542221111111  11111122 343  35689999996541           22


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (301)
                      ........++++++++|.+++.+-.. ..++..+.......  ...|+++|.||+|+.+.. ...++         .+.+
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-v~~~~---------~~~~  140 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQAW  140 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHHH
T ss_pred             hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-CcHHH---------HHHH
Confidence            33345678899999999984433333 33444444433211  123899999999975430 11111         3344


Q ss_pred             HHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ....+ .+++.      +|++++.|++++++.+.+.+
T Consensus       141 ~~~~~~~~~~e------~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         141 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence            44443 45555      89999999999998886543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.7e-15  Score=115.88  Aligned_cols=164  Identities=18%  Similarity=0.119  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      ++|+|+|.+|+|||||++++.+.... ...   .+|...........++  ..+.+|||||.....           ...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~-~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~   68 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFP-SEY---VPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RLR   68 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSC---CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-CCc---CCceeeecceeEeeCCceeeeeccccccchhhh-----------hhh
Confidence            78999999999999999999876542 221   1222222222222343  367899999965432           223


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC-----chHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK  170 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~-----~~l~  170 (301)
                      ..++..+|++++|+|++++-+-...  .++..+.. ...+.  |++++.||+|+...  ....+.......     ....
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--~i~lvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  143 (191)
T d2ngra_          69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKT--PFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETAE  143 (191)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTC--CEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHHHH
T ss_pred             hhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCCC--ceEEEecccccccc--chhhhhhhhcccccccHHHHH
Confidence            3457789999999999955443332  23333333 33333  99999999997654  222111111000     1122


Q ss_pred             HHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      .+....+ ..++.      +||+++.+++++++.+...+.
T Consensus       144 ~~~~~~~~~~~~e------~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         144 KLARDLKAVKYVE------CSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             HHHHHTTCSCEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCeEEE------EeCCCCcCHHHHHHHHHHHHh
Confidence            3344433 35555      799999999999998876543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.6e-15  Score=112.99  Aligned_cols=158  Identities=19%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ..+|+|+|.+|+|||||++++++......-    .+|...........+  ...+.+||++|......    .   ... 
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~-   70 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----M---RDL-   70 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----H---HHH-
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCccccccceeEEeeeeEEEeccccccCcccccc----c---ccc-
Confidence            368999999999999999999876642221    112221111111122  34679999999776432    1   111 


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (301)
                         ++..+|++++|+|++++-+-.. ..++..+.+..+ .+.  |+++|.||+|+........++         ...+..
T Consensus        71 ---~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~--p~ilvgnK~Dl~~~~~~~~~~---------~~~~~~  136 (167)
T d1c1ya_          71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILVGNKCDLEDERVVGKEQ---------GQNLAR  136 (167)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCC--CEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             ---cccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCC--eEEEEEEecCcccccccchhH---------HHHHHH
Confidence               2345599999999985544443 345554444332 233  899999999976441111111         123333


Q ss_pred             Hc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       175 ~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      .. +..++.      +||+++.|+++++..+.+.+
T Consensus       137 ~~~~~~~~e------~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         137 QWCNCAFLE------SSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HTTSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred             HhCCCEEEE------EcCCCCcCHHHHHHHHHHHh
Confidence            32 445554      89999999999999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.58  E-value=4.7e-14  Score=108.13  Aligned_cols=163  Identities=13%  Similarity=0.057  Sum_probs=98.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      +..+|+|+|.+|||||||+|++++.......     .|....... ...++..+.++|+||.....           ...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~   66 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-----PTIGFNVET-VTYKNLKFQVWDLGGLTSIR-----------PYW   66 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-----CCSSEEEEE-EEETTEEEEEEEECCCGGGG-----------GGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-----cccceeeee-eccCceEEEEeecccccccc-----------ccc
Confidence            4589999999999999999999987753221     222222222 23678889999999866521           122


Q ss_pred             hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (301)
                      .......++++++++..+....... ..+....... .....|++++.||.|+...  ....+.... ..   .......
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-~~---~~~~~~~  139 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQA--MTSSEMANS-LG---LPALKDR  139 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHH-HT---GGGCTTS
T ss_pred             hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeecccccc--ccHHHHHHH-HH---HHHHhcC
Confidence            2345677999999998744444432 2222222111 1122389999999998755  222222111 00   0011111


Q ss_pred             CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      ..++++      +||+++.|+++++++|.+.+..
T Consensus       140 ~~~~~~------~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         140 KWQIFK------TSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence            223443      7999999999999999877643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.7e-14  Score=117.03  Aligned_cols=139  Identities=18%  Similarity=0.239  Sum_probs=90.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCC------------------ccc--------cCCCCCcceeeEeEEEEeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL---GRKA------------------FKA--------SAGSSGVTKTCEMKTTVLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~---g~~~------------------~~~--------~~~~~~~t~~~~~~~~~~~~~~   69 (301)
                      ..+|+++||.++|||||+.+|+   |...                  +..        .....+.|.......+. +.++
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEec-cCCE
Confidence            4799999999999999999985   2110                  000        00012556665555555 7889


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEEE
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                      .++++||||..++           ..-+......+|++|+|+++..+       ...+.+..+..+. .+|.+   ++++
T Consensus        85 ~i~iiDtPGH~df-----------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~gv~---~iiv  149 (239)
T d1f60a3          85 QVTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGVR---QLIV  149 (239)
T ss_dssp             EEEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTCC---EEEE
T ss_pred             EEEEEECCCcHHH-----------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcCCC---eEEE
Confidence            9999999998883           22233345667999999999732       2234455554444 34553   6889


Q ss_pred             EEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188          143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (301)
Q Consensus       143 v~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (301)
                      ++||+|....+...+.+....     +..++...+.
T Consensus       150 ~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~~  180 (239)
T d1f60a3         150 AVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGY  180 (239)
T ss_dssp             EEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTC
T ss_pred             EEECCCCCCCCHHHHHHHHHH-----HHHHHHhcCC
Confidence            999999876543445555554     6666665553

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.5e-14  Score=109.87  Aligned_cols=165  Identities=16%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (301)
                      .+|+|+|.+|+|||||+++++........    .+|...........++  ..+.+|||+|......           ..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------VR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-----------TG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcc----CCceeecccccccccceEEeeccccccccccccc-----------cc
Confidence            57999999999999999999866542221    2222211211222333  3668999999654221           12


Q ss_pred             hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC----chHHHH
Q 022188           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP----KPLKEI  172 (301)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~----~~l~~~  172 (301)
                      ...+.++|++++|+|++++-+-.. ..++.......+.+.  |+++|.||+|..... ....+.......    .....+
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~~~  144 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANM  144 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC--EEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHH
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcc--eEEEEEecccccccc-hhhHHHhhhhcCcchHHHHHHH
Confidence            335788899999999985443333 222332223333344  999999999976431 111111111000    112334


Q ss_pred             HHHcCC-ceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 022188          173 LQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI  208 (301)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~  208 (301)
                      ....+. .++.      +||+++. +++++++.+...+
T Consensus       145 a~~~~~~~y~E------~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         145 AKQIGAATYIE------CSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             HHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCeEEE------EeCCCCCcCHHHHHHHHHHHH
Confidence            444443 4554      7888886 5999999876654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2e-14  Score=109.79  Aligned_cols=161  Identities=7%  Similarity=-0.028  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+|+++|++|||||||+|+|++..+...     .+|......... ..+....++|++|....           ......
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~   63 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELA-IGNIKFTTFDLGGHIQA-----------RRLWKD   63 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEC-CTTCCEEEEECCCSGGG-----------GGGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEec-cCCeeEEEEeeccchhh-----------hhhHhh
Confidence            3799999999999999999998775222     222222222222 55678899999985442           122333


Q ss_pred             cCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc--cCCchHHHHH-HH
Q 022188          100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH--ECPKPLKEIL-QL  175 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~--~~~~~l~~~~-~~  175 (301)
                      .....+++++++|.++........ .+...... ......|++++.||.|....  ....+....  .......... ..
T Consensus        64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~  140 (166)
T d2qtvb1          64 YFPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQ  140 (166)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSS
T ss_pred             hhhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhccc
Confidence            467789999999998544433322 22222221 22234589999999997654  222221111  0000000000 00


Q ss_pred             cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (301)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  206 (301)
                      .+..++      .+||+++.|+++++++|.+
T Consensus       141 ~~~~~~------~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         141 RPVEVF------MCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CCEEEE------EEBTTTTBSHHHHHHHHTT
T ss_pred             CCCEEE------EeeCCCCCCHHHHHHHHhC
Confidence            011223      3799999999999999853

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.1e-14  Score=107.92  Aligned_cols=157  Identities=19%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (301)
                      +..+|+++|.+|+|||||++++++... .... +   |...........++.  .+.+|||+|...         ..   
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~---t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~---------~~---   66 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLE-K---TESEQYKKEMLVDGQTHLVLIREEAGAPD---------AK---   66 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCC-CCCC-C---SSCEEEEEEEEETTEEEEEEEEECSSCCC---------HH---
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCC-CCcC-C---ccceeEEEEeecCceEEEEEEeecccccc---------cc---
Confidence            348999999999999999999987764 2211 1   111111111224554  578999999554         11   


Q ss_pred             HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (301)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (301)
                      +    ++.+|++|+|+|++++-+-.. ..+...+....... ...|+++|.||.|........+..       .....+.
T Consensus        67 ~----~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~~  135 (175)
T d2bmja1          67 F----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALC  135 (175)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHHH
T ss_pred             c----ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHHH
Confidence            2    234599999999985544333 23444444332111 122899999998865331011110       0022233


Q ss_pred             HHc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188          174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (301)
Q Consensus       174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  208 (301)
                      ... +.+++.      +||+++.++++++..+.+.+
T Consensus       136 ~~~~~~~~~e------~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         136 ADMKRCSYYE------TCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             HTSTTEEEEE------EBTTTTBTHHHHHHHHHHHH
T ss_pred             HHhCCCeEEE------eCCCCCcCHHHHHHHHHHHH
Confidence            322 334454      78999999999988776543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=5.6e-14  Score=111.88  Aligned_cols=117  Identities=11%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|++|||||||+|+|++....+      ..|... .......++..+.++||||.....   .    .+...+..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~-~~~~~~~~~~~~~l~D~~g~~~~~---~----~~~~~~~~   69 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQE-PLSAADYDGSGVTLVDFPGHVKLR---Y----KLSDYLKT   69 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSS-CEEETTGGGSSCEEEECCCCGGGT---H----HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecc-eEEEEEeCCeEEEEEecccccchh---h----HHHHHHHH
Confidence            689999999999999999999876521      112222 222233667789999999976532   1    22222333


Q ss_pred             cCCCccEEEEEEecCC-CCC-HHHHHHH----HHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          100 AKDGIHAFLVVFSVTN-RFS-QEEETAV----HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~-~~~-~~~~~~l----~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +....+.+++++++.. ... ......+    ..+......+.  |+++++||+|+...
T Consensus        70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--piiiv~NK~D~~~~  126 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI--DILIACNKSELFTA  126 (209)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCC--CEEEEEECTTSTTC
T ss_pred             HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccC--CeEEEEEeeccccc
Confidence            3445588899998772 222 2222222    23333333333  99999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.5e-14  Score=111.15  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      ++|+|+|++|+|||||+|+|++.......   +..+.......+....+..+.+||+||...       ..   ...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~---~~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LR---FQLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBC---CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HH---HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc---CCeeEEEEEEEEeeeeeeeeeeeecccccc-------cc---chhhhh
Confidence            46999999999999999999987653221   122222222222223466899999999433       11   122223


Q ss_pred             cCCCccEEEEEEecCCCCCH--HHHHHH-HHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          100 AKDGIHAFLVVFSVTNRFSQ--EEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~--~~~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      .+..++++++|+|+++....  .....+ ..+..........|++|+.||+|+...
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            34667999999999833221  112222 233222111112389999999998765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.47  E-value=3.4e-13  Score=108.55  Aligned_cols=118  Identities=20%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeeEeEEEEeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFK-----------------------------ASAGSSGVTKTCEMKTTVLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (301)
                      ..+|+++|+.++|||||+.+|+...-..                             ......+.|.......+. +++.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~-~~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe-cCCc
Confidence            4799999999999999999986211000                             001112344444444434 6788


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCeEEE
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                      .+++|||||..++           ..-+.....-+|++|+|+|+..+.       ....++.+..+.. ++..   ++++
T Consensus        82 ~i~iiDtPGH~df-----------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~---~iIv  146 (224)
T d1jnya3          82 FFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLIV  146 (224)
T ss_dssp             EEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCEE
T ss_pred             eeEEeeCCCcHHH-----------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCC---ceEE
Confidence            9999999998873           222333345669999999998553       2233344433333 3443   7899


Q ss_pred             EEeCCCCCCC
Q 022188          143 VFTGGDDLED  152 (301)
Q Consensus       143 v~nk~D~~~~  152 (301)
                      ++||+|+...
T Consensus       147 ~iNK~D~~~~  156 (224)
T d1jnya3         147 AVNKMDLTEP  156 (224)
T ss_dssp             EEECGGGSSS
T ss_pred             EEEcccCCCc
Confidence            9999998643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.5e-13  Score=116.39  Aligned_cols=117  Identities=22%  Similarity=0.323  Sum_probs=81.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCCCcc-c----------cCCCCCcceeeEeEEEEe---------------eCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK-A----------SAGSSGVTKTCEMKTTVL---------------KDG   68 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~---g~~~~~-~----------~~~~~~~t~~~~~~~~~~---------------~~~   68 (301)
                      ..++|+|+|+.++|||||+.+|+   |..... .          .....+.|......++.+               ++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            34689999999999999999996   211100 0          001123344433333321               134


Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..+++|||||..++..       +...++..+    |++++|+|+..++..+..+.++..... +  .  |+++++||+|
T Consensus        96 ~~inliDtPGh~dF~~-------ev~~al~~~----D~allVVda~eGv~~qT~~~~~~a~~~-~--~--p~i~viNKiD  159 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSS-------EVTAALRVT----DGALVVVDTIEGVCVQTETVLRQALGE-R--I--KPVVVINKVD  159 (341)
T ss_dssp             EEEEEECCCCCCSSCH-------HHHHHHHTC----SEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--EEEEEEECHH
T ss_pred             eEEEEEcCCCcHHHHH-------HHHHHHhhc----CceEEEEecccCcchhHHHHHHHHHHc-C--C--CeEEEEECcc
Confidence            5689999999999753       666777665    999999999999999999888877654 3  3  9999999999


Q ss_pred             CC
Q 022188          149 DL  150 (301)
Q Consensus       149 ~~  150 (301)
                      ..
T Consensus       160 r~  161 (341)
T d1n0ua2         160 RA  161 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            65

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.45  E-value=4.2e-13  Score=104.35  Aligned_cols=168  Identities=11%  Similarity=0.015  Sum_probs=89.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (301)
                      ++..+|+|+|.+|||||||+|+|++..+....+. ...+    ..... .++..+.++|++|......           .
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~-----------~   73 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPT----SEELT-IAGMTFTTFDLGGHIQARR-----------V   73 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCS----CEEEE-ETTEEEEEEEECC----CC-----------G
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecc-cccc----eeEEE-ecccccccccccchhhhhh-----------H
Confidence            3458999999999999999999998876332211 1111    12222 5677888999998665322           1


Q ss_pred             HhccCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH---HhcccCCchHHH-
Q 022188           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED---FLGHECPKPLKE-  171 (301)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~---~~~~~~~~~l~~-  171 (301)
                      ........++++++++..+........ .+...... ......|++++.||.|....  ....+   .+.......... 
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~  150 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGS  150 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhh
Confidence            223456679999999988443333322 22211111 11123499999999997654  22222   111100000000 


Q ss_pred             -HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188          172 -ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (301)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  207 (301)
                       .......+.+.   ..++||++|.|++++++||.+.
T Consensus       151 ~~~~~~~~~~~~---~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         151 VSLKELNARPLE---VFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CCTTTCCSCCEE---EEECBTTTTBSHHHHHHHHHTT
T ss_pred             hhHHHhhcCCCE---EEEEeCCCCCCHHHHHHHHHHh
Confidence             00000011001   1238999999999999998653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=8e-14  Score=113.53  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=86.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCCcc--------------------------ccCCCCCcceeeEeEEEEeeCCe
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTKTCEMKTTVLKDGQ   69 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (301)
                      .++|+++||.++|||||+.+|+   |.....                          ......+.+.......+. +.+.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~-~~~~  102 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TEHR  102 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CSSE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccc-cccc
Confidence            4679999999999999999994   221000                          000011223333333333 6778


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCeEEE
Q 022188           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMIV  142 (301)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~il  142 (301)
                      .+.++||||..++..       .+..    ....+|++++|+++..+.       ..+.++.+..+.. ++.+   ++++
T Consensus       103 ~i~~iDtPGH~df~~-------~~~~----g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~---~iiv  167 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVT-------NMIN----GASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLVV  167 (245)
T ss_dssp             EEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEEE
T ss_pred             eeeeecccccccchh-------hhhh----hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCC---eEEE
Confidence            999999999877422       2333    345669999999998542       2244555544443 3543   6889


Q ss_pred             EEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCC-------ceEEecCCCcccccchhHHHHHHHH
Q 022188          143 VFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDN-------RCVLFDNKTKDEAKGTEQVRQLLSL  203 (301)
Q Consensus       143 v~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~L~~~  203 (301)
                      ++||+|....  ....+.+.+..     +..++...+.       +++|      +||..|.++.++++.
T Consensus       168 ~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~~VP------iSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         168 VINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDRVDS  226 (245)
T ss_dssp             EEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSCCCT
T ss_pred             EEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCEEEE------eeccCCCCcccchhc
Confidence            9999998643  22234444444     4444333321       2333      788888888766543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.8e-11  Score=102.63  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEE-----------------------------------
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKT-----------------------------------   62 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~-----------------------------------   62 (301)
                      .++|+|+|..++|||||+|+|+|..+++++..+.. ..+......                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35799999999999999999999998777643221 111111100                                   


Q ss_pred             -------------EEeeCCeeEEEEeCCCCCCCCCCcH--HHHHHHHHHHhccCCCc-cEEEEEEecCCCCCHHHHHHHH
Q 022188           63 -------------TVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCLGMAKDGI-HAFLVVFSVTNRFSQEEETAVH  126 (301)
Q Consensus        63 -------------~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~l~  126 (301)
                                   .....-..+++|||||+......+.  .....+......+...+ +++++|.++...++..+.  +.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~--~~  183 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LK  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--HH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH--HH
Confidence                         0001224589999999986543221  11111112122222233 466677777755555542  23


Q ss_pred             HHHHhhCccccCeEEEEEeCCCCCCC
Q 022188          127 RLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus       127 ~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +++..-+..  .++++|+||+|....
T Consensus       184 ~~~~~~~~~--~r~i~Vltk~D~~~~  207 (299)
T d2akab1         184 IAKEVDPQG--QRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHCTTC--SSEEEEEECGGGSCT
T ss_pred             HHHHhCcCC--CceeeEEeccccccc
Confidence            333332222  279999999998755

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.34  E-value=2.1e-12  Score=108.95  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~   49 (301)
                      .++|+|+|..++|||||+|+|+|..+++++.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~   54 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGS   54 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence            3579999999999999999999999876654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=7e-11  Score=92.80  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|.+|||||||++++.    +....   .+|.......+. ..+..+.+||++|...           ......
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~~-~~~~~~~~~D~~gq~~-----------~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDFE-IKNVPFKMVDVGGQRS-----------ERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEEE-ETTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEEe-eeeeeeeeecccceee-----------eccccc
Confidence            3789999999999999999993    22221   123333333333 6788999999999433           223344


Q ss_pred             ccCCCccEEEEEEecCCCCCH--------HHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQ--------EEETAVHRLPNLFGKN--VFDYMIVVFTGGDDL  150 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~--------~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~  150 (301)
                      ..+...++++++++.++...-        .....+..+...+...  ...|+++++||+|+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            567888999999998843221        1122223333322211  123999999999965

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.1e-10  Score=98.30  Aligned_cols=105  Identities=11%  Similarity=0.122  Sum_probs=57.3

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk  146 (301)
                      +..+.+|.|.|.+..         +. .+    ...+|.+++|+.+..+   .+.. .-.-+.+.       +-++|+||
T Consensus       146 g~d~iliEtvG~gq~---------e~-~i----~~~aD~~l~v~~P~~G---d~iq~~k~gi~e~-------aDi~VvNK  201 (327)
T d2p67a1         146 GYDVVIVETVGVGQS---------ET-EV----ARMVDCFISLQIAGGG---DDLQGIKKGLMEV-------ADLIVINK  201 (327)
T ss_dssp             TCSEEEEEEECCTTH---------HH-HH----HTTCSEEEEEECC---------CCCCHHHHHH-------CSEEEECC
T ss_pred             CCCeEEEeecccccc---------ch-hh----hhccceEEEEecCCCc---hhhhhhchhhhcc-------ccEEEEEe
Confidence            345677777776651         11 11    2345899998876511   1111 11122232       45789999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHHc-------CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  209 (301)
                      +|....  .........     +...+...       ..+++.      +|+.++.|+++|++.|.+...
T Consensus       202 aD~~~~--~~~~~~~~~-----~~~al~~~~~~~~~w~p~V~~------~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         202 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLT------CSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEE------CBGGGTBSHHHHHHHHHHHHH
T ss_pred             ecccch--HHHHHHHHH-----HHHHhhhcccCCCCCcceeEE------EEeeCCCCHHHHHHHHHHHHH
Confidence            997654  223222222     22222211       123343      899999999999999987654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.6e-11  Score=94.81  Aligned_cols=109  Identities=15%  Similarity=0.062  Sum_probs=69.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|..|||||||++.+......+.     +    .....+ ......+.+|||.|...           +.....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~----~~~~~~-~~~~~~~~i~D~~Gq~~-----------~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----G----IVETHF-TFKDLHFKMFDVGGQRS-----------ERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----S----EEEEEE-EETTEEEEEEEECCSGG-----------GGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----c----EEEEEE-Eeeeeeeeeeccccccc-----------cccchh
Confidence            47899999999999999999874333111     1    111222 26778899999999544           233344


Q ss_pred             ccCCCccEEEEEEecCCCCCH--------HH---HH-HHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188           99 MAKDGIHAFLVVFSVTNRFSQ--------EE---ET-AVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~--------~~---~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~  150 (301)
                      .++.+++++++|++.++..+.        ..   .. +...+........  |+++++||+|..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~--~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT--SIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTS--EEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCC--CEEEEeccchhh
Confidence            568899999999998732211        11   11 2222222222233  999999999853

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.6e-11  Score=94.36  Aligned_cols=168  Identities=15%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|..|||||||++++..... ..     .+|.-.....+. .....+.+||++|....           .....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~-----~pTiG~~~~~~~-~~~~~~~~~d~~g~~~~-----------~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-SG-----VPTTGIIEYPFD-LQSVIFRMVDVGGQRSE-----------RRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-SC-----CCCCSCEEEEEE-CSSCEEEEEECCCSTTG-----------GGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-CC-----CceeeEEEEEEe-ccceeeeeccccccccc-----------ccccc
Confidence            47899999999999999999975543 21     123322233333 56778999999996552           22334


Q ss_pred             ccCCCccEEEEEEecCCCCC-----------HHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCC--ccccHHHHhccc
Q 022188           99 MAKDGIHAFLVVFSVTNRFS-----------QEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLED--HEKTLEDFLGHE  164 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~-----------~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~  164 (301)
                      .++.++++++++++.++...           .+... +...+........  |++++.||.|....  ....+..+....
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--~~~~v~NK~Dl~~~~~~~~~~~~~~~~~  141 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS--SVILFLNKKDLLEEKIMYSHLVDYFPEY  141 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSS--EEEEEEECHHHHHHHTTTSCHHHHSTTC
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCc--cEEEecchhhhhhhcccchHHHHhcccc
Confidence            45788999999999873211           11122 2233333322233  99999999996532  112222222110


Q ss_pred             C--Cch-------HH-HHHHHc--CC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          165 C--PKP-------LK-EILQLC--DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       165 ~--~~~-------l~-~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      .  ...       +. ......  .. .++.|    .+||+++.+++++++.+.+.+.+
T Consensus       142 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         142 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             CSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHHH
Confidence            0  000       11 111110  11 22221    25889999999999999776543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.10  E-value=3e-10  Score=91.88  Aligned_cols=78  Identities=15%  Similarity=-0.001  Sum_probs=41.9

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D  148 (301)
                      ..+.++|+||..+...     .......+. .....+.+++++|+.........................|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~~-----~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFL-----FHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHH-----HSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHHH-----HHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            4588999999665211     001111111 1234578899999874455444322222211111112228999999999


Q ss_pred             CCCC
Q 022188          149 DLED  152 (301)
Q Consensus       149 ~~~~  152 (301)
                      ....
T Consensus       169 ~~~~  172 (244)
T d1yrba1         169 LLSE  172 (244)
T ss_dssp             GCCH
T ss_pred             cccH
Confidence            8865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.5e-10  Score=92.60  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (301)
                      ..+|+++|..|||||||++.+.....    .    +|.-.....+. .++..+.+||+.|.....           ....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~----pTiG~~~~~~~-~~~~~~~~~D~~Gq~~~r-----------~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----V----LTSGIFETKFQ-VDKVNFHMFDVGGQRDER-----------RKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----C----CCCSCEEEEEE-ETTEEEEEEECCCSTTTT-----------TGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----C----CCCCeEEEEEE-ECcEEEEEEecCccceec-----------cchh
Confidence            37899999999999999999863222    1    12222222333 678899999999965521           2224


Q ss_pred             ccCCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCC
Q 022188           99 MAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLE  151 (301)
Q Consensus        99 ~~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~  151 (301)
                      .++.++++++++++.++.        ......+.+..+...+..+  ...|++|++||+|+.+
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            457889999999998721        1112223333444433332  1239999999999753

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=6.7e-11  Score=100.06  Aligned_cols=88  Identities=14%  Similarity=0.042  Sum_probs=43.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEE---EEe--------------------eCCeeEEEEeCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVL--------------------KDGQVVNVIDTP   77 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~--------------------~~~~~~~liDtP   77 (301)
                      .|+|+|.||||||||+|+|+|..+ ..+ ..+..|.......   ...                    .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~-~v~-nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCC-chh-cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            699999999999999999999765 221 1222232211100   000                    112468999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      |+.......    +-+...+....+.+|++++|+|+.
T Consensus        80 Gli~ga~~g----~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhcc----cchHHHHHHhhccceEEEEEeccc
Confidence            987642211    222233333457889999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.02  E-value=2.6e-10  Score=95.28  Aligned_cols=91  Identities=16%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDL   82 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~   82 (301)
                      ..+|+|||.|+||||||+|+|++..+.... ..+.+|...........+                ...+.++|.||+...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            389999999999999999999976542221 222333332222222111                246889999998765


Q ss_pred             CCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      .....-++.++...+.    .+|++++|+++.
T Consensus        89 A~~g~GLGn~fL~~ir----~~d~lihVV~~f  116 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVR----AVDAIYQVVRAF  116 (296)
T ss_dssp             CCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred             cccccccHHHHHHHhh----ccceeEEEEecc
Confidence            4433334456666655    449999999886

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=3.5e-10  Score=93.31  Aligned_cols=70  Identities=24%  Similarity=0.368  Sum_probs=45.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHH
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (301)
                      .....+|+|+|.||||||||+|+|.|.....++. .++.|...+..    ..+..+.++||||+..+...+....
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i----~~~~~~~l~DTPGi~~p~~~~~~~~  178 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWV----KVGKELELLDTPGILWPKFEDELVG  178 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSCCCCHHHH
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEE----ECCCCeEEecCCCccccCCccHHHH
Confidence            3456899999999999999999999998755543 23445443322    3456799999999987766665433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=3.7e-10  Score=89.21  Aligned_cols=62  Identities=29%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +.+.+++|++|+|||||+|+|.+.....++...     +. .|+..+.+.   .. ....+||||||.++..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~---l~-~gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK---FD-FGGYVVDTPGFANLEI  162 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE---CT-TSCEEESSCSSTTCCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE---EC-CCcEEEeCCccccccc
Confidence            468899999999999999999987665554221     12 233333332   22 2347999999987654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=1.9e-10  Score=95.16  Aligned_cols=89  Identities=17%  Similarity=0.110  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS   83 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~   83 (301)
                      .+|+|||.|+||||||+|+|++..+-  ....+..|...........+                .-.+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~--~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCc--cccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            68999999999999999999987641  11122233332222221111                1257899999987532


Q ss_pred             CCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (301)
                      ....-++.++.+.+..+    |++++|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~----d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRET----DAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC----SEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhc----cceEEEeecc
Confidence            11122334566666544    9999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.93  E-value=9e-09  Score=86.32  Aligned_cols=107  Identities=16%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhCccccCeEEEEEeC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG  146 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ilv~nk  146 (301)
                      |..+.+|.|.|.+..         +.. .    ...+|.+++|+.+..   +.+...++ -+.+.       +-++|+||
T Consensus       143 g~d~iiiETVG~gq~---------e~~-~----~~~~D~~v~v~~p~~---GD~iQ~~k~gilE~-------aDi~vvNK  198 (323)
T d2qm8a1         143 GFDVILVETVGVGQS---------ETA-V----ADLTDFFLVLMLPGA---GDELQGIKKGIFEL-------ADMIAVNK  198 (323)
T ss_dssp             TCCEEEEEECSSSSC---------HHH-H----HTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEEC
T ss_pred             CCCeEEEeehhhhhh---------hhh-h----hcccceEEEEeeccc---hhhhhhhhhhHhhh-------hheeeEec
Confidence            567789999987763         111 1    223599999988762   12211111 11111       56899999


Q ss_pred             CCCCCCccccHHHHhcccCCchHHHHHHH-------cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188          147 GDDLEDHEKTLEDFLGHECPKPLKEILQL-------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (301)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  210 (301)
                      +|....  ......+..    .+...+..       ...+++.      +|+.++.|+++|++.|......
T Consensus       199 aD~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~------~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         199 ADDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSTTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEE------EEecCCCCHHHHHHHHHHHHHH
Confidence            997655  332222211    01111111       1223343      7889999999999999877543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=4e-08  Score=76.96  Aligned_cols=75  Identities=21%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC----CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK----DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      +..+.||||||....   +.....++........    ..++-.++|+++...  ..+..........++     +--++
T Consensus        93 ~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  162 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN-----VTGII  162 (213)
T ss_dssp             TCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC-----CceEE
Confidence            456899999997663   3444444544443321    236788999999721  222222222222222     46689


Q ss_pred             EeCCCCCCC
Q 022188          144 FTGGDDLED  152 (301)
Q Consensus       144 ~nk~D~~~~  152 (301)
                      +||.|....
T Consensus       163 ~TKlDe~~~  171 (213)
T d1vmaa2         163 LTKLDGTAK  171 (213)
T ss_dssp             EECGGGCSC
T ss_pred             EecccCCCc
Confidence            999997643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=6.8e-10  Score=87.95  Aligned_cols=62  Identities=31%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~----~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (301)
                      +.+.+++|++|+|||||+|+|++.....++...    .+ .|+..... +. .++  -.+||||||.++..
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l-~~-~~g--g~iiDTPG~r~~~l  163 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL-IH-TSG--GLVADTPGFSSLEF  163 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE-EE-ETT--EEEESSCSCSSCCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE-Ee-cCC--CEEEECCccccccc
Confidence            467789999999999999999998665554221    12 33332222 22 333  36999999987654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=7.7e-08  Score=75.11  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc----CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      +..+.+|||||....   +....+++.......    ...++-.++|+++...  ..+........+.++     .--++
T Consensus        91 ~~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEE
Confidence            346899999997652   333444554443322    1246789999999722  333222222222233     45689


Q ss_pred             EeCCCCCCC
Q 022188          144 FTGGDDLED  152 (301)
Q Consensus       144 ~nk~D~~~~  152 (301)
                      +||.|....
T Consensus       161 lTKlDe~~~  169 (211)
T d2qy9a2         161 LTKLDGTAK  169 (211)
T ss_dssp             EECCTTCTT
T ss_pred             EeecCCCCC
Confidence            999997644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.75  E-value=2e-07  Score=72.62  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=43.3

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---c-CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM---A-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv  143 (301)
                      +..+.+|||||....   +....+++......   . ...++-+++|+++....  .+........+.++     +--++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccC-----CceEE
Confidence            457899999997663   33333344333222   1 24668889999998332  33222222323333     34589


Q ss_pred             EeCCCCCCC
Q 022188          144 FTGGDDLED  152 (301)
Q Consensus       144 ~nk~D~~~~  152 (301)
                      +||.|....
T Consensus       158 ~TKlDet~~  166 (207)
T d1okkd2         158 VTKLDGTAK  166 (207)
T ss_dssp             EECTTSSCC
T ss_pred             EeccCCCCC
Confidence            999997644

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.74  E-value=8.3e-08  Score=75.02  Aligned_cols=75  Identities=9%  Similarity=0.045  Sum_probs=41.8

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.+|||||..... .......++.......  .++-+++|++++....  ...........++     .--+++||.
T Consensus        94 ~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~~-----~~~lI~TKl  163 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQASK-----IGTIIITKM  163 (211)
T ss_dssp             TCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHCT-----TEEEEEECT
T ss_pred             CCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhcccC-----cceEEEecc
Confidence            4578999999975422 1122233444443322  4578899999873332  2222222223323     344789999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       164 Det~~  168 (211)
T d1j8yf2         164 DGTAK  168 (211)
T ss_dssp             TSCSC
T ss_pred             cCCCc
Confidence            97644

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.72  E-value=1.7e-07  Score=73.18  Aligned_cols=73  Identities=19%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (301)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~  147 (301)
                      +..+.+|||||....   +.....++......  ..++-+++|+++..+  .........+.+.++     .--+++||.
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~--~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEV--LGPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhh--cCCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            457899999997763   34445555555443  256788999998732  333344444444344     345889999


Q ss_pred             CCCCC
Q 022188          148 DDLED  152 (301)
Q Consensus       148 D~~~~  152 (301)
                      |....
T Consensus       160 De~~~  164 (207)
T d1ls1a2         160 DGDAR  164 (207)
T ss_dssp             GGCSS
T ss_pred             Ccccc
Confidence            96544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.14  E-value=4.1e-06  Score=64.88  Aligned_cols=30  Identities=20%  Similarity=0.112  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G   56 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG   56 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccccCCC
Confidence            467999999999999999999998765554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.9e-06  Score=67.76  Aligned_cols=67  Identities=28%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEE--eeCCeeEEEEeCCCCCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSA   84 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~   84 (301)
                      +...|+|+|+.++|||+|+|.|+|... |..+.+..+.|.-.-.....  ...+..+.++||.|+.+...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~  100 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  100 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccccc
Confidence            346899999999999999999998653 44444333444443222221  12355789999999987543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.06  E-value=1.8e-05  Score=59.61  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFK   46 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~   46 (301)
                      .+|+|+|++|+|||||++.|+|...+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            369999999999999999999865533

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.97  E-value=1.7e-05  Score=62.82  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|.|...+.+|
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G   60 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcCCCCc
Confidence            468999999999999999999998775554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=5e-06  Score=66.07  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G   57 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   57 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3468999999999999999999998875554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=5.7e-06  Score=65.23  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|.|...+.+|
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG   55 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG   55 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            3468999999999999999999998876554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.81  E-value=5.6e-06  Score=65.88  Aligned_cols=30  Identities=30%  Similarity=0.437  Sum_probs=26.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||+++|+|...+.+|
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            468999999999999999999998775554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.80  E-value=6.7e-06  Score=65.08  Aligned_cols=30  Identities=33%  Similarity=0.408  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG   61 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   61 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCC
Confidence            467999999999999999999998876554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.80  E-value=7.6e-06  Score=65.19  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   57 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCCC
Confidence            3578999999999999999999998875554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.80  E-value=6.5e-06  Score=64.83  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||++.|.|...+.+|
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCCCCCcc
Confidence            3468999999999999999999998765444

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.74  E-value=6.7e-06  Score=64.62  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|.|...+.+|
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG   55 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCC
Confidence            3468999999999999999999998765554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=4e-05  Score=60.20  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.+.++|.|.-|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4577899999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.8e-06  Score=64.71  Aligned_cols=30  Identities=23%  Similarity=0.291  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.|+|+|++|+|||||++.|+|...+.+|
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            468999999999999999999998765444

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.6e-06  Score=66.06  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|+|||||++.|+|...+.+|
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCcCCCc
Confidence            3468999999999999999999998765544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.72  E-value=9.4e-06  Score=64.14  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      -.++|+|++|||||||++.|.|...+.+|
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G   53 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            36789999999999999999998875544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.1e-05  Score=64.68  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      ++-.++|+|++|||||||++.|+|...+.+|
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCcC
Confidence            3568999999999999999999998775544

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.71  E-value=1e-05  Score=64.99  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||+++|+|...+.+|
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCcCCCc
Confidence            467899999999999999999998775554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.70  E-value=1.1e-05  Score=63.92  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+.+|
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~p~sG   58 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            468999999999999999999998775554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=1.1e-05  Score=63.83  Aligned_cols=30  Identities=17%  Similarity=0.137  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|.|...+.+|
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCccccCC
Confidence            468999999999999999999998765444

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.70  E-value=1.1e-05  Score=64.57  Aligned_cols=30  Identities=33%  Similarity=0.482  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|||||||++.|+|...+..|
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            468999999999999999999998765444

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=1.9e-05  Score=63.39  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      .+-.++|+|++|||||||+++|.|...+.+|
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCccCCCC
Confidence            3468999999999999999999998764444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=2.1e-05  Score=59.48  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ++|+|+|++|+|||||++.|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=1.6e-05  Score=62.83  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+-.++|+|++|||||||++.|+|..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            35689999999999999999999954

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=1.6e-05  Score=63.69  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~   48 (301)
                      +-.++|+|++|+|||||++.|+|...+.+|
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCCcccc
Confidence            468999999999999999999998775544

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=6e-05  Score=58.28  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+++|.||+||||+.+.|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00044  Score=55.38  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .++++||++|+|||+++..|.....  .+..+.            ...+..+.-+|...+........++.+.+...+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~------------~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~  105 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV--QGDVPE------------VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ  105 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH--HTCSCG------------GGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH--hCCccc------------ccccceeEEeeechHhccCccchhHHHHHHHHHHH
Confidence            5799999999999999999874433  111100            02334455555554443222222223333333333


Q ss_pred             cCCCccEEEEEEecCCCC------CHHHHHHHHHHHHhhCcc
Q 022188          100 AKDGIHAFLVVFSVTNRF------SQEEETAVHRLPNLFGKN  135 (301)
Q Consensus       100 ~~~~~~~il~v~~~~~~~------~~~~~~~l~~l~~~~~~~  135 (301)
                      .....++++|+-++. .+      ++.....-..|+..+...
T Consensus       106 ~~~~~~iIlfiDeih-~l~~~g~~~g~~~d~a~~Lkp~L~rg  146 (268)
T d1r6bx2         106 LEQDTNSILFIDEIH-TIIGAGAASGGQVDAANLIKPLLSSG  146 (268)
T ss_dssp             HSSSSCEEEEETTTT-TTTTSCCSSSCHHHHHHHHSSCSSSC
T ss_pred             hhccCCceEEecchH-HHhcCCCCCCccccHHHHhhHHHhCC
Confidence            233345555554444 22      223455566777666544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=57.82  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.|+|+|++|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999999984

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.0046  Score=52.07  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      -++++||++|+|||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3589999999999999987764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.37  E-value=5.7e-05  Score=56.44  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +++.+|+|+|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999743

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.26  E-value=5.8e-05  Score=56.25  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ++|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999963

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00036  Score=56.34  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=37.5

Q ss_pred             HHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (301)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~  152 (301)
                      +++.+.+.    .+|++|+|+|+..+++..+....+.++    .   +|+++|+||+|+...
T Consensus         7 r~i~~~i~----~~DvIl~V~DaR~P~ss~~~~l~~~~~----~---Kp~IlVlNK~DLv~~   57 (273)
T d1puja_           7 REVTEKLK----LIDIVYELVDARIPMSSRNPMIEDILK----N---KPRIMLLNKADKADA   57 (273)
T ss_dssp             HHHHHHGG----GCSEEEEEEETTSTTTTSCHHHHHHCS----S---SCEEEEEECGGGSCH
T ss_pred             HHHHHHHH----hCCEEEEEEECCCCCCCCCHHHHHHHc----C---CCeEEEEECccCCch
Confidence            44555554    459999999999888877755544443    2   399999999998865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.20  E-value=0.00011  Score=56.05  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ++.+|+|+|++||||||....|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999997

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.16  E-value=0.00012  Score=53.37  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00012  Score=54.45  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.|+|+|.+|||||||++.|...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            35789999999999999998743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.12  E-value=0.00015  Score=55.25  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ++..|+|+|++||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446889999999999999999974

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.10  E-value=0.00012  Score=55.65  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.+|+|+|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00017  Score=54.80  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ....|+|.|++|||||||.+.|.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999987

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0001  Score=57.01  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|+||+|||||||++.|+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.03  E-value=0.00016  Score=53.61  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999843

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.02  E-value=0.00021  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|.|++||||||+.+.|...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            466899999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00028  Score=52.81  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ....-|+++|.+||||||+.+.++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999986

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.99  E-value=0.00018  Score=54.10  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.99  E-value=0.00028  Score=58.38  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+|+|.|++|+|||||+|+|++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999999644

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00027  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ....|+|+|++||||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999974

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.019  Score=44.79  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|.|++|+||||++.+++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999988743

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.97  E-value=0.00025  Score=53.96  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...+|+|+|++||||||+...|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999984

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.00021  Score=53.99  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..|+|+||+||||||+++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            357899999999999999999754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00018  Score=52.78  Aligned_cols=22  Identities=36%  Similarity=0.687  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.|.|+|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999973

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0003  Score=53.66  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ....|+|+|++||||||+...|+...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999997543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00017  Score=54.03  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.|.|.|++|+|||||+..+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.96  E-value=0.00021  Score=53.65  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      +.|+|.|++||||||+++.|.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999986

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.94  E-value=0.00026  Score=52.84  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|.|+|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999873

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00018  Score=53.38  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ++|+|+|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999986

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.89  E-value=0.00022  Score=52.75  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.84  E-value=0.00029  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.637  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+|+|+|++||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00022  Score=54.14  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (301)
                      .+++++|++|+|||+++..|.....  .+..+.            ...+..++-+|...+........+..+.+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~------------~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII--NGEVPE------------GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH--HTCSCG------------GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH--hCCCCH------------HHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            5799999999999999998874333  111110            13345566777655443222223334444444433


Q ss_pred             cC-CCccEEEEEEecC
Q 022188          100 AK-DGIHAFLVVFSVT  114 (301)
Q Consensus       100 ~~-~~~~~il~v~~~~  114 (301)
                      .. ...++|+|+-++.
T Consensus       110 ~~~~~~~iILfIDeih  125 (195)
T d1jbka_         110 LAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHSTTTEEEEEETGG
T ss_pred             HhcCCCcEEEEcchHH
Confidence            22 2346777776665

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00032  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999873

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00031  Score=53.23  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00033  Score=52.57  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00037  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00037  Score=52.40  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +-|+|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999853

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.77  E-value=0.0004  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +.|+|.|++||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56888899999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0004  Score=52.76  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+|+|+|++||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.003  Score=49.54  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      .++|.|++|+||||+...+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999988753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.0011  Score=51.71  Aligned_cols=69  Identities=22%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             CccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          103 GIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       103 ~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      .+|.+++|+.+. ..+...-...+-.+.+..+.    +.+||+||+|+...  ....+.+..     +.......|-+++
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i----~pvIvlnK~DL~~~--~~~~~~~~~-----~~~~y~~~g~~v~   78 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDI----QPIICITKMDLIED--QDTEDTIQA-----YAEDYRNIGYDVY   78 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTC----EEEEEEECGGGCCC--HHHHHHHHH-----HHHHHHHHTCCEE
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeccccccc--HHHHHHHHH-----HHHHHhhccccce
Confidence            568888988876 34555555444444444444    78899999998866  444444443     3444444555555


Q ss_pred             E
Q 022188          182 L  182 (301)
Q Consensus       182 ~  182 (301)
                      .
T Consensus        79 ~   79 (231)
T d1t9ha2          79 L   79 (231)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00043  Score=53.52  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.67  E-value=0.0005  Score=52.31  Aligned_cols=24  Identities=21%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ...|.|+|+|||||||+...|...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.60  E-value=0.00048  Score=55.12  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+.-|++.|+||+||||+..+|.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34569999999999999999998643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0005  Score=52.22  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 022188           22 VVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g   41 (301)
                      |+|+||+||||||+.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00036  Score=52.83  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+..|.|+|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356888999999999999999963

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.56  E-value=0.00056  Score=50.87  Aligned_cols=20  Identities=20%  Similarity=0.576  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      .|+|+|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999986

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.46  E-value=0.00079  Score=50.58  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.|+|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3567889999999999999963

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00094  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+..|+|.|.+||||||+.+.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999885

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.43  E-value=0.00082  Score=51.06  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..+..|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.20  E-value=0.0016  Score=51.76  Aligned_cols=25  Identities=32%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ....++|.|++|+||||+++.|+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998743

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0014  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+++.||+|+||||+.+++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.00026  Score=53.98  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      ..+|+|++|+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999985

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0024  Score=49.02  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 022188           21 TVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g   41 (301)
                      -+++.|++|+||||+...++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999997654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.014  Score=44.96  Aligned_cols=84  Identities=15%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             CccEEEEEEecCC-CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188          103 GIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (301)
Q Consensus       103 ~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (301)
                      .+|.+++|+.+.. .++..-...+-.+.+..+.    +.+||+||+|+.+.  .....+...      ..... .+..++
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i----~pvIvlnK~DL~~~--~~~~~~~~~------~~~~~-~~~~v~   76 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNEL----ETVMVINKMDLYDE--DDLRKVREL------EEIYS-GLYPIV   76 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTC----EEEEEECCGGGCCH--HHHHHHHHH------HHHHT-TTSCEE
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeCcccCCH--HHHHHHHHh------hcccc-cceeEE
Confidence            5688999998863 5655554433334444444    88899999998765  333322211      11111 123344


Q ss_pred             EecCCCcccccchhHHHHHHHHHH
Q 022188          182 LFDNKTKDEAKGTEQVRQLLSLVN  205 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~L~~~l~  205 (301)
                      .      .|++++.++++|..++.
T Consensus        77 ~------vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          77 K------TSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             E------CCTTTCTTHHHHHHHHS
T ss_pred             E------eccccchhHhhHHHHhc
Confidence            4      56666777777777653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.009  Score=43.35  Aligned_cols=59  Identities=22%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (301)
                      ++..|++-|+-|||||||++.++...-....+..+..+.. +.+  . ..+..+.=+|.=-+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y--~-~~~~~i~H~DlYRl~   90 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEY--N-IAGKMIYHFDLYRLA   90 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEE--E-ETTEEEEEEECTTCS
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-Eee--c-cCCceEEEEEEeccC
Confidence            4568999999999999999998755433322222222222 111  1 345566667754433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.05  E-value=0.0018  Score=50.01  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      .+|+|-||+||||||....|...-
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            678999999999999999997543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0016  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+++.||||+||||+.+.|...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35999999999999999999743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0026  Score=50.12  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ....++|.||+|+||||++.+|+...
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999998543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.0015  Score=53.49  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+++||||+|||.|.++|+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35699999999999999999984

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.99  E-value=0.002  Score=50.94  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|++.||+|+|||++.++|.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            35799999999999999999984

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0026  Score=51.80  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..+..|+|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            346899999999999999988875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.90  E-value=0.0025  Score=48.95  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ++..|.|.|.+||||||+.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999873

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.90  E-value=0.0013  Score=52.92  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +...|+|.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34679999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.88  E-value=0.0026  Score=49.55  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|.|++|+||||+++.|...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.87  E-value=0.0013  Score=53.52  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 022188           21 TVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l   39 (301)
                      .-+|+|++|+||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4589999999999999998

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0026  Score=48.77  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|.|..||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            579999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0027  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      +.|+|.||+||||||....|....
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999987543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0038  Score=50.22  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+..|+|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456799999999999999998775

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.0029  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|.|..||||||+.+.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999885

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.68  E-value=0.0018  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+.|.|++|+|||++++.++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456699999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0037  Score=49.60  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+.|++.||+|+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            35699999999999999999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.05  Score=42.11  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...++|.|+|.+||||+++++.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            3568999999999999999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0045  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +-|++.||+|+|||++++++.+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            5699999999999999999984

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.0046  Score=48.76  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .-|++.|++|+|||+++++|.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4599999999999999999984

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.44  E-value=0.0041  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|+|.|++|+|||||++.++
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            578999999999999999886

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0031  Score=53.52  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      .-+|+|++|+||||++.+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999984

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0045  Score=48.15  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 022188           20 RTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..++|.||+|+||||+++.++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34899999999999999999854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.33  E-value=0.0047  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..-|+|.|++|+||||++.+++..
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhh
Confidence            367999999999999999999854

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.25  E-value=0.025  Score=43.57  Aligned_cols=64  Identities=13%  Similarity=0.041  Sum_probs=36.8

Q ss_pred             eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEE-EEEeC
Q 022188           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMI-VVFTG  146 (301)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i-lv~nk  146 (301)
                      ..+.++|+|+...         ......+.    .+|.+++++..+ ..+-.. .+.++.+++. +.    |++ +|+|+
T Consensus       112 ~d~IiiD~~~~~~---------~~~~~~l~----~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~~----~~~giv~N~  172 (237)
T d1g3qa_         112 FDFILIDCPAGLQ---------LDAMSAML----SGEEALLVTNPE-ISCLTDTMKVGIVLKKA-GL----AILGFVLNR  172 (237)
T ss_dssp             CSEEEEECCSSSS---------HHHHHHHT----TCSEEEEEECSC-HHHHHHHHHHHHHHHHT-TC----EEEEEEEEE
T ss_pred             CCEEEEccccccc---------ccchhhhh----hhhccccccccc-ceecchhhHHHHHHhhh-hh----hhhhhhhcc
Confidence            5788999987543         12223333    359999998876 222222 3344444432 22    444 88999


Q ss_pred             CCCCC
Q 022188          147 GDDLE  151 (301)
Q Consensus       147 ~D~~~  151 (301)
                      .+...
T Consensus       173 ~~~~~  177 (237)
T d1g3qa_         173 YGRSD  177 (237)
T ss_dssp             ETSCT
T ss_pred             ccccc
Confidence            88543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.21  E-value=0.0044  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.+|+++||||+|||-+.++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.009  Score=48.84  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        15 ~~~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+...++++||+|+|||.|..+|..
T Consensus        48 ~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          48 EHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchhHHHHHHHHh
Confidence            333445799999999999999999873

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0038  Score=48.66  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+.|+|-|+.||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999988753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.07  E-value=0.0062  Score=46.29  Aligned_cols=20  Identities=20%  Similarity=0.337  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      .|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999887

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0064  Score=46.94  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+++.||+|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.0061  Score=48.57  Aligned_cols=25  Identities=24%  Similarity=0.423  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~   43 (301)
                      ...|++.|++|+|||+|+++|++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3569999999999999999998533

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.98  E-value=0.045  Score=42.07  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 022188           21 TVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~   40 (301)
                      .++|.|++.+||||+++++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            58999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.96  E-value=0.0074  Score=50.34  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ....+++.||||+|||+|.++|++.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0079  Score=45.91  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.-|+|-|..||||||+++.|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0075  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+++.|++|+||||++..|+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999853

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0085  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +.-|+|-|..||||||+++.|.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            4668889999999999998876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.01  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..|+|=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999999974

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.57  E-value=0.069  Score=40.78  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=16.3

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 022188           20 RTVVLL-GRTGNGKSATGNSI   39 (301)
Q Consensus        20 ~~I~lv-G~~g~GKStlin~l   39 (301)
                      +.|+|. |..|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            567888 88999999988654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.011  Score=44.88  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+.|.|++|+|||+|+..++.
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999988874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.51  E-value=0.011  Score=49.34  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+|+++||||+|||-+.++|+.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999999873

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.37  E-value=0.012  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999853

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.05  E-value=0.013  Score=44.17  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +...|++.||+++|||+|+++|++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3478999999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.017  Score=44.66  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      +..+.|.|++|+|||+|+-.++-.
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999888743

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.02  Score=43.75  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ++.-|+|=|..||||||+++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHH
Confidence            45779999999999999999886

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.58  E-value=0.026  Score=41.64  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +.-|+|.|++|+||||+.-.|.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            4679999999999999998876

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.56  E-value=0.026  Score=45.07  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...|+|+|..|.|||||...+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.47  E-value=0.029  Score=41.41  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.-|+|.|++|+||||+.-.|..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46699999999999999988874

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.17  E-value=0.03  Score=45.56  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           17 NGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      .+...++++|++|+|||.+.+.|..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHH
Confidence            3344788999999999999998863

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.14  E-value=0.028  Score=43.64  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..+.|.|++|+|||+|.-.++
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            4678999999999999997775

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.87  E-value=0.033  Score=43.10  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+.|.|++|+|||+|+-.++.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            45789999999999999988763

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.84  E-value=0.058  Score=42.66  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+.|.|++|+|||+|+-.++.
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHH
Confidence            45789999999999999977763

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.83  E-value=0.038  Score=40.44  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +.-|+|.|++|+||||+.-.|..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46799999999999999877763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.024  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+.++|+|.+|+|||++++.++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            3569999999999999998776

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.72  E-value=0.024  Score=46.15  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 022188           21 TVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        21 ~I~lvG~~g~GKStlin~l~g~   42 (301)
                      .+++.|+||+|||.+.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4556799999999999999854

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.67  E-value=0.017  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 022188           20 RTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..|+++|++|+|||++.+++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3599999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.55  E-value=0.032  Score=42.59  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 022188           22 VVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        22 I~lvG~~g~GKStlin~l~g   41 (301)
                      +.|.|++|+|||-|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.50  E-value=0.04  Score=42.50  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..+.|.|++|+|||+|.-.++
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            4678999999999999998876

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.44  E-value=0.2  Score=39.47  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (301)
                      +..+.|.|++|+|||+|+-.+.....                     ..+..+.+|||-|-.+
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q---------------------~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQ---------------------AAGGVAAFIDAEHALD  101 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHH---------------------HTTCEEEEEESSCCCC
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHh---------------------cCCCEEEEEECCccCC
Confidence            46789999999999999866652111                     1244567999999666

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.046  Score=42.37  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      +..+.|.|++|+|||+|.-.++.
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.28  E-value=0.042  Score=43.48  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=18.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +-.++|.|+||+|||||+..++
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3568899999999999987765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.20  E-value=0.047  Score=43.18  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           18 GERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ....+.+.|++++|||+|+++|...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4468899999999999999998743

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.03  E-value=0.034  Score=45.47  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+|+|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999743

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.02  E-value=0.036  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ..+|+|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46899999999999999999974

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.00  E-value=0.047  Score=41.71  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=18.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..+.|.|++|+|||+|.-.++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            4678999999999999986543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.95  E-value=0.056  Score=37.66  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=17.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..+.+|.+++|+|||+++-.++
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHH
Confidence            3567889999999998875443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.062  Score=42.82  Aligned_cols=26  Identities=12%  Similarity=0.102  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        16 ~~~~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      -..+-+++|+|++|+|||+|+..|..
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            34568999999999999999988874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.51  E-value=0.057  Score=44.10  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILGR   42 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g~   42 (301)
                      ..+|.|=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            478999999999999999999854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.60  E-value=0.044  Score=43.87  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCcHHHHH-HHH
Q 022188           21 TVVLLGRTGNGKSATG-NSI   39 (301)
Q Consensus        21 ~I~lvG~~g~GKStli-n~l   39 (301)
                      .++|+|++|+||||++ +.+
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            4789999999999764 443

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.079  Score=41.66  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ...+|+|++|+|||||+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            467899999999999987664

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.51  E-value=0.054  Score=43.68  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCcHHHHH
Q 022188           21 TVVLLGRTGNGKSATG   36 (301)
Q Consensus        21 ~I~lvG~~g~GKStli   36 (301)
                      .++|.|.+|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.11  Score=43.00  Aligned_cols=20  Identities=35%  Similarity=0.523  Sum_probs=17.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNS   38 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~   38 (301)
                      ....+|.|++|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            36789999999999998854

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.31  E-value=0.13  Score=35.03  Aligned_cols=24  Identities=13%  Similarity=0.090  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 022188           17 NGERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        17 ~~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      .++..|.+.|..|+||||+-++|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            357899999999999999999996

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.30  E-value=0.11  Score=40.68  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l   39 (301)
                      ++|+|.|+-|+||||+.-.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            57999999999999987443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.12  E-value=0.49  Score=35.16  Aligned_cols=23  Identities=4%  Similarity=-0.012  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 022188           19 ERTVVLLGRTGNGKSATGNSILG   41 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~g   41 (301)
                      ...+++.|++|+|||++...+..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998874

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.00  E-value=0.26  Score=38.84  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+-|++|+|.+|+|||+|+-.+.
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHH
Confidence            35799999999999999987775

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.66  E-value=0.29  Score=38.63  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=16.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 022188           20 RTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l   39 (301)
                      ++|+|-|+-|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57899999999999976543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.33  Score=38.21  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l   39 (301)
                      .+.|.+.|+.|+||||+.-.|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHH
Confidence            467889999999999976655

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.43  E-value=0.27  Score=38.11  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 022188           20 RTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~g~GKStlin~l~   40 (301)
                      ..|.|.|++|+||+.+.+.|.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            348999999999999999997

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.36  E-value=0.35  Score=37.81  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=16.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 022188           19 ERTVVLLGRTGNGKSATGNSI   39 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l   39 (301)
                      .+.|++.|+-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            356677799999999986554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.08  E-value=0.16  Score=34.90  Aligned_cols=17  Identities=35%  Similarity=0.292  Sum_probs=14.1

Q ss_pred             CceEEEEEcCCCCcHHH
Q 022188           18 GERTVVLLGRTGNGKSA   34 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKSt   34 (301)
                      ++.+++|.++||+|||.
T Consensus         6 ~~~~~il~~~tGsGKT~   22 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTR   22 (140)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEcCCCCChhH
Confidence            34678888999999993

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=0.35  Score=37.84  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 022188           19 ERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        19 ~~~I~lvG~~g~GKStlin~l~   40 (301)
                      +..+.|.|++|+|||||+=.++
T Consensus        54 g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHH
Confidence            3678999999999999986665

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.12  E-value=0.42  Score=37.80  Aligned_cols=23  Identities=13%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 022188           18 GERTVVLLGRTGNGKSATGNSIL   40 (301)
Q Consensus        18 ~~~~I~lvG~~g~GKStlin~l~   40 (301)
                      .+-+++|+|.+|+|||+++..+.
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHH
Confidence            35799999999999999986554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=0.57  Score=34.82  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=17.6

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHh
Q 022188           20 RTVVLLGRT-GNGKSATGNSIL   40 (301)
Q Consensus        20 ~~I~lvG~~-g~GKStlin~l~   40 (301)
                      +++-|.|.. |+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            678999994 999999887664