Citrus Sinensis ID: 022195

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MAVAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Secondary Structure (PSIPRED)
ccEEEEEEccccccccccccccccccccccccccEEEccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEcccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccccHHccccccccEEEEEcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccHHHHHccccEEEEccccEEEEcccccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAVAMVLSYHHvsgyvnpnksslrarwgqrcsvirccngrageraskkkNYYELLGVSVEANGQEIKEAYRKLQKkyhpdiagqkgheHTLLLNEAYKVLMRGdlrkdydasigqmrfhfgtnasagfsrsswkgpprpealfvdenacigcrecvhhasntfvmdeatgcarvkvqygdsdqnievsvdscpvncihwvdreelpvlefliqpqpkkgygvfgggwerpaNVFMAAKAFNKQLQQqaaggsnprtaqstadketpAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Flexible Loop (DISEMBL)
MAVAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRccngrageraskkknyyELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGgsnprtaqstadketpaQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Low Complexity Region (SEG)
MAVAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Disordered region (IsUnstruct)
***AMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGF***********EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAF***************************************KMERFSIIWNFFKQVFR*****
Disordered Region (DISOPRED)
********YHH**G********************************KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKD*DAS**QMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCR*CVHHA*NTFVMDE******************EVSVDSCPVNCIHWVDREELPVLEFLI********************VFMA**************************************ASMKIKMERFSIIWNFFKQVFREK*V*
Disordered Region (DISEMBL)
MAVAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNA**********GPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQ*******************************ASMKIKMERFSIIWNFFKQVFREKHVQ
Disordered Region (DISPRO)
*AVAMVLSYHHVSGYVNPNKSSL*ARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG*NASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPR********************SMKIKMERFSIIWNFFKQVFREK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q6MT07	372	Chaperone protein DnaJ OS	yes	no	0.249	0.201	0.494	3e-12
P71500	372	Chaperone protein DnaJ OS	yes	no	0.272	0.220	0.464	1e-11
B9DNJ9	377	Chaperone protein DnaJ OS	yes	no	0.209	0.167	0.531	2e-10
B8CXL0	375	Chaperone protein DnaJ OS	yes	no	0.265	0.213	0.441	2e-10
Q8G6C6	381	Chaperone protein DnaJ OS	yes	no	0.212	0.167	0.5	4e-10
Q2YT48	379	Chaperone protein DnaJ OS	yes	no	0.209	0.166	0.5	6e-10
Q6GGC1	379	Chaperone protein DnaJ OS	yes	no	0.209	0.166	0.5	6e-10
P63972	379	Chaperone protein DnaJ OS	yes	no	0.209	0.166	0.5	6e-10
A8Z4B8	379	Chaperone protein DnaJ OS	yes	no	0.209	0.166	0.5	6e-10
Q6G8Y8	379	Chaperone protein DnaJ OS	yes	no	0.209	0.166	0.5	6e-10

>sp|Q6MT07|DNAJ_MYCMS Chaperone protein DnaJ OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1) GN=dnaJ PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 12/87 (13%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDL 105
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 106 RKDYDASIGQMRFHFGTNA---SAGFS 129
           RK YD         FG NA   S+GFS
Sbjct: 62  RKQYD--------QFGHNAFDGSSGFS 80

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Mycoplasma mycoides subsp. mycoides SC (strain PG1) (taxid: 272632)

>sp|P71500|DNAJ_MYCCT Chaperone protein DnaJ OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=dnaJ PE=3 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDL 105
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 106 RKDYDASIGQMRFHFGTNASAGFS 129
           RK YD   G   F   +  S+ F+
Sbjct: 62  RKQYD-QFGHRAFDNSSGFSSNFT 84

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) (taxid: 340047)

>sp|B9DNJ9|DNAJ_STACT Chaperone protein DnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LGVS +A+  EIK+AYRKL KKYHPDI  ++G E     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKR 62

Query: 107 KDYD 110
            +YD
Sbjct: 63  ANYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus carnosus (strain TM300) (taxid: 396513)

>sp|B8CXL0|DNAJ_HALOH Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDLR 106
           K+YYE+LGVS +A+ +EIK+AYR+L +KYHPDI        E    ++EAY++L   D R
Sbjct: 5   KDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKR 64

Query: 107 KDYD----ASIGQMRFHFGTNASAGF 128
             YD    A I +  F+F   A  GF
Sbjct: 65  ARYDQYGHAGINEEDFNFEDFAQRGF 90

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|Q8G6C6|DNAJ_BIFLO Chaperone protein DnaJ OS=Bifidobacterium longum (strain NCC 2705) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109
           +YYE LGV   A+  EIK+AYRKL +KYHPDIAG +  +    +N AY VL   D R+ Y
Sbjct: 3   DYYETLGVERGASDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRRMY 62

Query: 110 DASI 113
           D+ +
Sbjct: 63  DSGV 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bifidobacterium longum (strain NCC 2705) (taxid: 206672)

>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

>sp|Q6GGC1|DNAJ_STAAR Chaperone protein DnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MW2) (taxid: 196620)

>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

>sp|Q6G8Y8|DNAJ_STAAS Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
359494012	302	PREDICTED: uncharacterized protein LOC10	0.936	0.933	0.697	1e-114
388513049	301	unknown [Lotus japonicus]	0.923	0.923	0.651	1e-107
224055541	299	predicted protein [Populus trichocarpa]	0.953	0.959	0.636	1e-105
356571315	276	PREDICTED: uncharacterized protein LOC10	0.883	0.963	0.683	1e-104
255567365	301	heat shock protein binding protein, puta	0.956	0.956	0.631	1e-103
449450080	301	PREDICTED: uncharacterized protein LOC10	0.960	0.960	0.612	2e-92
148909157	460	unknown [Picea sitchensis]	0.787	0.515	0.588	2e-83
359494021	284	PREDICTED: uncharacterized protein LOC10	0.767	0.813	0.611	5e-78
242095856	302	hypothetical protein SORBIDRAFT_10g01781	0.837	0.834	0.542	5e-73
302757113	409	hypothetical protein SELMODRAFT_403442 [	0.790	0.581	0.509	1e-72

>gi|359494012|ref|XP_003634709.1| PREDICTED: uncharacterized protein LOC100854700 [Vitis vinifera] gi|297735977|emb|CBI23951.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/294 (69%), Positives = 237/294 (80%), Gaps = 12/294 (4%)

Query: 7   LSYHHVSGYVNPNKS------SLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVE 60
           +S HH S    PN S      +L  RW  + + +RC +   G+ A  +K+YYELLGVSV+
Sbjct: 6   VSLHHFSL---PNSSQFDIPNNLTTRWRHKFTSVRCSSRSDGQSARTRKSYYELLGVSVD 62

Query: 61  ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHF 120
           +N QEIKEAYRKLQKKYHPD+AGQKGHE++L+LNEAY+VL R DLR++YDASIG+MR  F
Sbjct: 63  SNPQEIKEAYRKLQKKYHPDVAGQKGHEYSLMLNEAYRVLAREDLRREYDASIGKMRVGF 122

Query: 121 GTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD 180
           G   S G   S+WKGP RP+ALFVDEN CIGCRECVHHA NTFVMD+A GCARVKVQYGD
Sbjct: 123 GGIFS-GMGYSAWKGPLRPQALFVDENKCIGCRECVHHAGNTFVMDDALGCARVKVQYGD 181

Query: 181 SDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAF 240
            D+ IEVSVDSCPVNCIHWVDREEL +LEFLIQPQPK+GYGVFGGGWERPANVFMAAKAF
Sbjct: 182 DDKKIEVSVDSCPVNCIHWVDREELAILEFLIQPQPKEGYGVFGGGWERPANVFMAAKAF 241

Query: 241 NKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQV 294
           NKQL+QQA    + R A  T ++ETPAQAEARA+ASMKIKMER S IWN+ K+V
Sbjct: 242 NKQLKQQA--DHHQRNASRTVEEETPAQAEARANASMKIKMERLSRIWNWVKEV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513049|gb|AFK44586.1| unknown [Lotus japonicus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/284 (65%), Positives = 224/284 (78%), Gaps = 6/284 (2%)

Query: 12  VSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYR 71
           V G++N N    R    Q  +V+RCCN R+ E+   + NYYELLGVSV+++  +IKEAYR
Sbjct: 20  VHGHMNFNSPMSR----QNVTVVRCCNRRSWEKPRAQNNYYELLGVSVDSDTHQIKEAYR 75

Query: 72  KLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRS 131
           KLQKKYHPDI GQKGHE+TL+LN+AY+VLM  D R+ YD SIGQMR  FG N SA    S
Sbjct: 76  KLQKKYHPDIVGQKGHEYTLMLNKAYEVLMTEDRRRKYDESIGQMRLRFGENNSAPLGYS 135

Query: 132 SWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDS 191
           +W GP RP+ALFVDENACIGCREC+HHAS+TF+MDEA GCARVKVQYGD D+NIEVS++S
Sbjct: 136 TWNGPLRPQALFVDENACIGCRECLHHASHTFIMDEAVGCARVKVQYGDIDKNIEVSMES 195

Query: 192 CPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGG 251
           CPVNCIHWV+ E+LP LEFL+QPQPK+GYG+FGGGWERP+NVF AAK+FNKQL+ QA   
Sbjct: 196 CPVNCIHWVETEDLPTLEFLMQPQPKEGYGIFGGGWERPSNVFTAAKSFNKQLKGQAT-- 253

Query: 252 SNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVF 295
           + P       D+E+PAQAEARA ASM IKME F  I N+ +++F
Sbjct: 254 TRPYERTGGIDQESPAQAEARAHASMMIKMENFLKIRNWVREIF 297

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055541|ref|XP_002298530.1| predicted protein [Populus trichocarpa] gi|222845788|gb|EEE83335.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 222/294 (75%), Gaps = 7/294 (2%)

Query: 3   VAMVLSYHHVSGYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEAN 62
           ++M  ++   + Y NP+ +  R     +C  +RCC+ R    A  KKNYYELLGVSV+++
Sbjct: 11  LSMPKAFQIHASYFNPSTTISR----HKCFPVRCCDRRREGSARTKKNYYELLGVSVDSS 66

Query: 63  GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGT 122
            Q+IKEAYRKLQKKYHPDIAG KGHE+ L+LNEAY VLM  DLR  YDASIG M    G 
Sbjct: 67  TQKIKEAYRKLQKKYHPDIAGHKGHEYALMLNEAYNVLMTDDLRTKYDASIGHMTVQIGK 126

Query: 123 NASAG-FSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS 181
           N        SSWKGP RP+ALFVDENACIGCRECVHHASNTF++DE+ GCARVK QYGD 
Sbjct: 127 NNYVNVMGSSSWKGPLRPQALFVDENACIGCRECVHHASNTFILDESIGCARVKTQYGDD 186

Query: 182 DQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFN 241
           DQ IEVS++SCPVNCI+WVDREEL +LEFLIQPQ K+GYGVFG GWER ANVFMAAK  +
Sbjct: 187 DQKIEVSIESCPVNCIYWVDREELALLEFLIQPQLKQGYGVFGQGWERTANVFMAAKTLS 246

Query: 242 KQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVF 295
           KQL+QQA    N    ++T ++ETPAQAEARA+AS+KIKME FS IW+    +F
Sbjct: 247 KQLRQQAEHNHN--NVRTTVEEETPAQAEARANASLKIKMESFSKIWDSLNGIF 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571315|ref|XP_003553824.1| PREDICTED: uncharacterized protein LOC100776887 [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/272 (68%), Positives = 213/272 (78%), Gaps = 6/272 (2%)

Query: 26  RWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK 85
           RW Q  +VIRCCN    E    + NYY+LLGVSV++N  EIKEAYRKLQKKYHPDI GQK
Sbjct: 3   RWRQNLAVIRCCNRGTWEIPMTQNNYYDLLGVSVDSNAHEIKEAYRKLQKKYHPDIFGQK 62

Query: 86  GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVD 145
           GHE+TL+LN+AY+VLM  DLR+ YD SIG MR  FG N +     S WKGP +P+ALFVD
Sbjct: 63  GHEYTLMLNKAYEVLMTEDLRRKYDESIGPMRLRFGGNNTQALGYSIWKGPVKPQALFVD 122

Query: 146 ENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREEL 205
           ENACIGCRECVHHAS+TF MDE  G ARVKVQYGD+DQ+IEVSV+SCPVNCIHWV+ EEL
Sbjct: 123 ENACIGCRECVHHASHTFTMDETQGSARVKVQYGDNDQSIEVSVESCPVNCIHWVETEEL 182

Query: 206 PVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTAD--K 263
           PVLEFLIQPQPK GYGVFGGGWERPANVF AAK+FNKQL+++    S  R  QS     +
Sbjct: 183 PVLEFLIQPQPKDGYGVFGGGWERPANVFTAAKSFNKQLKRK----STIRHDQSPGGTFE 238

Query: 264 ETPAQAEARASASMKIKMERFSIIWNFFKQVF 295
           E+PAQAEA+A A MKIKME F  IWN+ K+  
Sbjct: 239 ESPAQAEAQARADMKIKMEGFLKIWNWVKETL 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567365|ref|XP_002524662.1| heat shock protein binding protein, putative [Ricinus communis] gi|223536023|gb|EEF37681.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/307 (63%), Positives = 231/307 (75%), Gaps = 19/307 (6%)

Query: 1   MAVAMVLSYHHVS--------GYVNPNKSSLRARWGQRCSVIRCCNGRAGERASKKKNYY 52
           M++++V  Y+  S        G  NPN +   +RW Q+C  IRCC  R        KNYY
Sbjct: 4   MSLSIVSVYYPFSLPKLSQFHGCFNPNNTC--SRWRQKCPRIRCC-IRQTASTRTDKNYY 60

Query: 53  ELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112
           ELLGVSV+++ + IKEAYRKLQKKYHPDIAGQ+GHE+T +LNEAYK+LMR DLR++YD S
Sbjct: 61  ELLGVSVDSDVKGIKEAYRKLQKKYHPDIAGQQGHEYTSMLNEAYKILMREDLRREYDIS 120

Query: 113 IGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCA 172
           IGQ    +G N +     SSW+GP R +ALFVDENACIGCRECVH+A NTFVMDEA G A
Sbjct: 121 IGQ----YGKNNNVVMGFSSWRGPFRSQALFVDENACIGCRECVHNACNTFVMDEANGSA 176

Query: 173 RVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPAN 232
           RVKVQ+GD DQ I+VSVDSCPVNCIHWVD EEL VLEFL QP+ K+GYGVFG GWERP N
Sbjct: 177 RVKVQFGDDDQQIQVSVDSCPVNCIHWVDTEELAVLEFLNQPKLKEGYGVFGQGWERPTN 236

Query: 233 VFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFK 292
           VF+AAK+F+KQL+QQ     +    +ST ++ETPAQAEARA+ASMKIKMERFS IWN  K
Sbjct: 237 VFVAAKSFSKQLKQQP----DYFQTRSTVEEETPAQAEARANASMKIKMERFSEIWNLVK 292

Query: 293 QVFREKH 299
           + F  KH
Sbjct: 293 KTFWFKH 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450080|ref|XP_004142792.1| PREDICTED: uncharacterized protein LOC101222804 [Cucumis sativus] gi|449483772|ref|XP_004156687.1| PREDICTED: uncharacterized LOC101222804 [Cucumis sativus]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/310 (61%), Positives = 226/310 (72%), Gaps = 21/310 (6%)

Query: 1   MAVAMVLSYHHVSGYV----------NPNKSSLRARWG--QRCSVIRCCNGRAGERASKK 48
           MA+++V S HH    +          + NK  LR   G  QR + IRC    A ER ++ 
Sbjct: 1   MAISIVPSIHHSMPPIASSPSLPHPKDHNKHILRILVGRRQRLTSIRCS---ASERVNEM 57

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKD 108
            NYYELLGVS ++N QEIKEAYRKLQKK+HPDIAGQ+GHE+TL LNEAY VLMR D RK 
Sbjct: 58  -NYYELLGVSADSNTQEIKEAYRKLQKKFHPDIAGQEGHEYTLRLNEAYGVLMREDRRKQ 116

Query: 109 YDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEA 168
           YD   G MR  FG N   G   SSW GP RP+ALFVD NACIGCRECVH+ASNTF MDE 
Sbjct: 117 YDTYTGGMRVRFG-NFGTGLGYSSWNGPLRPQALFVDGNACIGCRECVHNASNTFTMDET 175

Query: 169 TGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWE 228
            G ARVKVQYGD+D+ I+VSV+SCPVNCI+WV++EEL VLE+L+QP PKKGYGVFGGGWE
Sbjct: 176 LGRARVKVQYGDNDKKIQVSVESCPVNCIYWVEKEELEVLEYLMQPLPKKGYGVFGGGWE 235

Query: 229 RPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIW 288
            PANVFMAAKAF KQL++Q     + +    T   ETPAQAEARA+A+MKI+ E+F  +W
Sbjct: 236 IPANVFMAAKAFTKQLERQE---QDTKYGAETVG-ETPAQAEARANATMKIQREKFHGVW 291

Query: 289 NFFKQVFREK 298
           N+ KQVF ++
Sbjct: 292 NWVKQVFSDR 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909157|gb|ABR17679.1| unknown [Picea sitchensis]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 184/250 (73%), Gaps = 13/250 (5%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107
           +++YY++LGV V A  Q+I++AYRKLQKKYHPDIAG+KGH  TLLLNEAY++LMR DLR 
Sbjct: 51  QQDYYQVLGVPVGATPQDIRKAYRKLQKKYHPDIAGEKGHAMTLLLNEAYQILMRDDLRA 110

Query: 108 DYDASIG---QMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFV 164
            YD S G   QM   F      G + SSW GP RPEALFVDEN CIGCRECV HAS TF+
Sbjct: 111 KYDVSNGKNSQMNSQF-----TGLAYSSWNGPERPEALFVDENTCIGCRECVFHASKTFI 165

Query: 165 MDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFG 224
           MDEA GCARVKVQ+GD D  I+ S+DSCPVNCIHWVDRE+LP+LEFL +P PK   GVFG
Sbjct: 166 MDEALGCARVKVQFGDDDSQIKASLDSCPVNCIHWVDREDLPILEFLARPHPKTSNGVFG 225

Query: 225 GGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERF 284
           GGWERP+NVFMAAK + +++ +     +     +S+A +ET AQ +AR +A +K++M   
Sbjct: 226 GGWERPSNVFMAAKTYKRKMNEMQISKT-----ESSASEETVAQHKARMNAQLKLRMGTL 280

Query: 285 SIIWNFFKQV 294
              W++  Q+
Sbjct: 281 WWFWSWIDQL 290

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494021|ref|XP_003634711.1| PREDICTED: uncharacterized protein LOC100855066 [Vitis vinifera] gi|297735976|emb|CBI23950.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (759), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/247 (61%), Positives = 182/247 (73%), Gaps = 16/247 (6%)

Query: 7   LSYHHVS-----GYVNPNKSSLRARWGQRCSVIRCCNGRAGERASK-KKNYYELLGVSVE 60
           +S HH S      + NPN  +L  RW    + +RC    AG R+++ +K+Y+ELLG SV+
Sbjct: 6   VSLHHFSLTNSSQFDNPN--NLITRWKPEFTSVRCSTSTAGRRSARTRKSYHELLGDSVD 63

Query: 61  ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHF 120
           +N Q+IKEAYRKLQKKYHPD+AG+KGHE++L+LNEAY VL   DLR++YDASIGQMR  F
Sbjct: 64  SNTQQIKEAYRKLQKKYHPDVAGEKGHEYSLMLNEAYGVLAWEDLRREYDASIGQMRVGF 123

Query: 121 GTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD 180
             + S G    SWKGP RP+A        IG RECVHHA NTFVM +A GCARVKV+YGD
Sbjct: 124 WGSFS-GLGYRSWKGPLRPQA-------SIGSRECVHHAGNTFVMVDALGCARVKVRYGD 175

Query: 181 SDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAF 240
            D+ IEV VDSC VN IHWVDREEL +L+FLIQPQP++GYGVFGGGWERPA VFMAAK  
Sbjct: 176 DDKKIEVWVDSCLVNWIHWVDREELAILKFLIQPQPQEGYGVFGGGWERPAIVFMAAKPS 235

Query: 241 NKQLQQQ 247
            K+  QQ
Sbjct: 236 KKRPNQQ 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095856|ref|XP_002438418.1| hypothetical protein SORBIDRAFT_10g017810 [Sorghum bicolor] gi|241916641|gb|EER89785.1| hypothetical protein SORBIDRAFT_10g017810 [Sorghum bicolor]

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 141/260 (54%), Positives = 184/260 (70%), Gaps = 8/260 (3%)

Query: 32  SVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL 91
           SVIRCC   +  R   +  YY++LG++V +  QEIKEAYRKLQKK+HPDIAG KGH++TL
Sbjct: 37  SVIRCC---SAARGRTRDYYYQVLGITVHSTPQEIKEAYRKLQKKHHPDIAGYKGHDYTL 93

Query: 92  LLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIG 151
           LLNEAYKVLMR +    +    G+ R   G   + G   SSW GP R +ALFVDEN CIG
Sbjct: 94  LLNEAYKVLMRDN--SMHAGGRGRSRVGLGVGYT-GDGYSSWNGPVRSQALFVDENKCIG 150

Query: 152 CRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFL 211
           CRECVHHA+ TF MD+  G A V++Q+GD DQ I+++V+SCPVNCIHWV+  ELPVLEFL
Sbjct: 151 CRECVHHAARTFAMDDVLGSAHVEIQFGDLDQQIQLAVESCPVNCIHWVESHELPVLEFL 210

Query: 212 IQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTAD--KETPAQA 269
            +PQPK+G+G+FGGGWERP NVF AA+ F K+L+++       ++++S  D   ET AQA
Sbjct: 211 SRPQPKEGHGIFGGGWERPRNVFAAAQNFAKRLEREEQELERDQSSRSPNDCEAETEAQA 270

Query: 270 EARASASMKIKMERFSIIWN 289
           +AR  A  +++ +     WN
Sbjct: 271 KARRCAGEELRWKTLFDAWN 290

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302757113|ref|XP_002961980.1| hypothetical protein SELMODRAFT_403442 [Selaginella moellendorffii] gi|300170639|gb|EFJ37240.1| hypothetical protein SELMODRAFT_403442 [Selaginella moellendorffii]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 180/257 (70%), Gaps = 19/257 (7%)

Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
           R++ +++YYE+LGV   ++ ++I++AYR LQK++HPDI+G KGH  TL+LNEAY+VL   
Sbjct: 42  RSTNQQDYYEILGVLPGSSMEDIRKAYRNLQKQHHPDISGSKGHAMTLMLNEAYQVLSDE 101

Query: 104 DLRKDYDASIGQ------MRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVH 157
            LR  YDAS+        M +++   +  G   S+W GP RP+ +FVDENACIGCREC  
Sbjct: 102 RLRSKYDASLPHLASTRTMNYYYSKPSFTGSMYSTWNGPDRPQGIFVDENACIGCRECAF 161

Query: 158 HASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPK 217
            A NTF+ DE+TGCARVK Q+GD+D  ++V++ +CPVNCIHWV+R +LP+LE+LI+PQP+
Sbjct: 162 AAKNTFLFDESTGCARVKAQWGDADDTVKVAIQTCPVNCIHWVERSDLPILEYLIRPQPR 221

Query: 218 KGYGVFGGGWERPANVFMAAKAFNKQ---LQQQAAGGSNPRTAQSTADKETPAQAEARAS 274
              GV+GGGWERP+N+FMAAKAF  Q    QQQ    S+  +       ETPAQ +AR  
Sbjct: 222 PSNGVYGGGWERPSNIFMAAKAFKHQHHKSQQQDKDSSSNMS-------ETPAQRKARMD 274

Query: 275 ASMKIKMERFSIIWNFF 291
           A +K+KM  F   W+ F
Sbjct: 275 ADLKLKMGPF---WSMF 288

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.774	0.501	0.364	7.4e-34
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.691	0.604	0.298	4e-19
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.249	0.563	0.453	7e-15
TAIR|locus:5019474746	244	AT3G05345 "AT3G05345" [Arabido	0.598	0.737	0.273	6.1e-12
UNIPROTKB|F1NNE0	393	DNAJA3 "Uncharacterized protei	0.322	0.246	0.446	5.5e-10
UNIPROTKB|J9P8P4	453	DNAJA3 "Uncharacterized protei	0.305	0.203	0.45	9.7e-10
UNIPROTKB|Q96EY1	480	DNAJA3 "DnaJ homolog subfamily	0.305	0.191	0.45	1.1e-09
UNIPROTKB|Q8WW22	397	DNAJA4 "DnaJ homolog subfamily	0.269	0.204	0.421	1.2e-09
UNIPROTKB|Q864B5	397	DNAJA4 "PDJA1 chaperone" [Sus	0.269	0.204	0.421	1.5e-09
UNIPROTKB|F1PP91	399	DNAJA4 "Uncharacterized protei	0.269	0.203	0.421	1.5e-09

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 89/244 (36%), Positives = 132/244 (54%)

Query:    37 CNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEA 96
             C   +   +    + Y+LLG+   ++  +IK AYR LQK+ HPDIAG  GH+  ++LNEA
Sbjct:    37 CRATSSSSSITDFDLYDLLGIDRSSDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEA 96

Query:    97 YKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPE-ALFVDENACIGCREC 155
             Y++L     R+ YD    ++    G      +S   W GP   + A FVDE  C+GC +C
Sbjct:    97 YQLLSDPISRQAYDKEQAKLEELRGYTGKPIYS--VWCGPETEQRAAFVDEVKCVGCLKC 154

Query:   156 VHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQ 215
                A  TF ++ A G ARV  Q+ D +  I+ ++++CPV+CI  V+R +L  LEFL+  Q
Sbjct:   155 ALCAEKTFAIETAYGRARVVAQWADPESKIKEAIEACPVDCISMVERSDLAPLEFLMSKQ 214

Query:   216 PKKGY--GVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQA-EAR 272
             P+     GV     ER +NVF+  K F    Q++ A   + RT + T+ +E    A EA 
Sbjct:   215 PRGNVRIGVGNTVGERVSNVFVDVKKF----QERYAKAMS-RTTKETSQREVQISAVEAI 269

Query:   273 ASAS 276
              S S
Sbjct:   270 RSIS 273

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 66/221 (29%), Positives = 109/221 (49%)

Query:    50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGH--EHTLLLNEAYKVLMRGDLRK 107
             +YY +LG+  +A  +EIK+AY    K  HPD++G         + +N+ Y++L     R 
Sbjct:    76 DYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRM 135

Query:   108 DYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDE 167
              YD   G     +   A   F   S    PR + +FVDE ACIGC+ C + A + F ++E
Sbjct:   136 VYDEIHG-----YTVTAINPFLDDS---TPR-DHVFVDEFACIGCKNCANVAPDIFQIEE 186

Query:   168 ATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW 227
               G AR   Q G+ D  ++ +V++CPV+CIH     +L +LE  ++   +    +   G 
Sbjct:   187 DFGRARACNQRGNPDL-VQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVALMLSGM 245

Query:   228 ERPA-NVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPA 267
                A +VF  A++  ++ Q +    +  R  +     ETP+
Sbjct:   246 GSGAVDVFRMARSRWEKRQAKVLNQARSRMMKRKNTDETPS 286

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 190 (71.9 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query:   135 GPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 194
             G  R   ++VDE  CIGC+ C H A NTF +++  G +R   Q GD +  I+ ++D+CPV
Sbjct:    39 GELRERGVYVDEVTCIGCKNCAHVAPNTFTIEQEHGRSRAFSQNGDDEAVIQEAIDTCPV 98

Query:   195 NCIHWVDREELPVLE 209
             +CIHWV  +EL  LE
Sbjct:    99 DCIHWVPYDELKHLE 113

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:5019474746 AT3G05345 "AT3G05345" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 55/201 (27%), Positives = 89/201 (44%)

Query:    25 ARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ 84
             +R+      I  C G+  E      + Y +LGV    +  E+K A+R   K+YHPD+  +
Sbjct:    19 SRYSTSQRFIPSCRGKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYHPDV-NK 77

Query:    85 KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEAL-- 142
              G    +++    +++   ++  +Y  S              G     +  P   EAL  
Sbjct:    78 DGSNSDIMIR---RIIQAYEMLTNYSRS----------EIIEGECLDPFDHP-ECEALDV 123

Query:   143 FVDENACIGCR---ECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 199
             FV+E  C+G R    C   AS+ F  D ++G AR   Q    D  ++ +V+ CP NCIH+
Sbjct:   124 FVNEVLCVGKRCSYPCFETASHVFSCD-SSGTARAMSQGHGEDYRVQSAVNQCPRNCIHY 182

Query:   200 VDREELPVLEFLIQPQPKKGY 220
             V   +  +LE L+     K Y
Sbjct:   183 VTPSQRIILEELLDSVVDKPY 203

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1NNE0 DNAJA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 46/103 (44%), Positives = 54/103 (52%)

Query:    45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR 102
             A  K++YYE+LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL  
Sbjct:    26 ARAKEDYYEVLGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFAQLAEAYEVLSD 85

Query:   103 GDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 143
                RK YDA  G   F  G    AG  R  W   P   PE LF
Sbjct:    86 EVKRKQYDA-YGTASFDPGATG-AGAGRQYWSSGPSIDPEELF 126

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

UNIPROTKB|J9P8P4 DNAJA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 45/100 (45%), Positives = 56/100 (56%)

Query:    48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDL 105
             K++YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     
Sbjct:    91 KEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 150

Query:   106 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 143
             RK YDA  G   F  G  +S    +S WKG P   PE LF
Sbjct:   151 RKQYDA-YGSAGFDPGAGSSG---QSYWKGGPTVDPEELF 186

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96EY1 DNAJA3 "DnaJ homolog subfamily A member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 45/100 (45%), Positives = 56/100 (56%)

Query:    48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDL 105
             K++YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     
Sbjct:    91 KEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 150

Query:   106 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 143
             RK YDA  G   F  G   ++G   S WKG P   PE LF
Sbjct:   151 RKQYDA-YGSAGFDPG---ASGSQHSYWKGGPTVDPEELF 186

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;IDA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0005133 "interferon-gamma receptor binding" evidence=IDA

GO:0034341 "response to interferon-gamma" evidence=IDA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0008385 "IkappaB kinase complex" evidence=IDA

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IDA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=ISS

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|Q8WW22 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     3 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 61

Query:   107 KDYDASIGQMRFHFGTNASAGFS 129
               YD   G+     G + S  FS
Sbjct:    62 DVYDQG-GEQAIKEGGSGSPSFS 83

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q864B5 DNAJA4 "PDJA1 chaperone" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     3 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 61

Query:   107 KDYDASIGQMRFHFGTNASAGFS 129
               YD   G+     G + S  FS
Sbjct:    62 DIYDQG-GEQAIKEGGSGSPSFS 83

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PP91 DNAJA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     4 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 62

Query:   107 KDYDASIGQMRFHFGTNASAGFS 129
               YD   G+     G + S  FS
Sbjct:    63 DIYDQG-GEQAIKEGGSGSPSFS 84

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam00226	63	pfam00226, DnaJ, DnaJ domain	6e-19
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	2e-18
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	6e-17
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-16
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-15
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-15
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-14
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-14
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-13
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-13
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	4e-13
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-13
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-12
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-12
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-12
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-12
pfam13370	58	pfam13370, Fer4_13, 4Fe-4S single cluster domain	9e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-11
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-11
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	5e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-10
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-09
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-09
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-09
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-08
COG1141	68	COG1141, Fer, Ferredoxin [Energy production and co	2e-08
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	3e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-08
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-08
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	9e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	2e-06
TIGR01944	165	TIGR01944, rnfB, electron transport complex, RnfAB	1e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-05
PRK05113	191	PRK05113, PRK05113, electron transport complex pro	4e-05
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	9e-05
COG2878	198	COG2878, COG2878, Predicted NADH:ubiquinone oxidor	5e-04
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	0.003
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 78.3 bits (194), Expect = 6e-19
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL--LLNEAYKVLMRGDLRK 107
           +YYE+LGV  +A+ +EIK+AYRKL  KYHPD              +NEAY+VL   + R 
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 108 DYD 110
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 143 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG----DSDQNIEVSVDSCPVNCIH 198
           FVD + CIGC  CV  A + F +DE  G ARV +  G    D +++ + + D+CPV+ IH
Sbjct: 1   FVDRDTCIGCGLCVALAPDVFELDE-DGKARVILDEGEVPDDLEEDAQEAADACPVDAIH 59

Query: 199 W 199
            
Sbjct: 60  V 60

Length = 60

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 80.0 bits (197), Expect = 6e-17
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 12/87 (13%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDL 105
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 106 RKDYDASIGQMRFHFGTNA---SAGFS 129
           RK YD         FG  A   S+GFS
Sbjct: 62  RKQYD--------QFGHAAFDGSSGFS 80

Length = 372

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 10/70 (14%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVL 100
            K++YYE+LGVS +A+ +EIK+AYRKL KKYHPD       A +K  E    +NEAY+VL
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE----INEAYEVL 57

Query: 101 MRGDLRKDYD 110
              + R  YD
Sbjct: 58  SDPEKRAAYD 67

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 51  YYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDLRKDY 109
           YYE+LGVS +A+ +EIK+AYRKL KKYHPD    K   E    +NEAY+VL   + R  Y
Sbjct: 2   YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61

Query: 110 DASIGQMRF-HFGTNASAGFS 129
           D      +F H G N   G  
Sbjct: 62  D------QFGHAGFNGGGGGG 76

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 68.3 bits (168), Expect = 3e-15
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVL 100
           +YY++LGV  +A+ +EIK+AYRKL  KYHPD      +  E    +NEAY+VL
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVL 53

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 68.0 bits (167), Expect = 4e-15
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL---LLNEAYKVL 100
            +YYE+LGV  +A+  EIK+AYRKL  KYHPD       E       +NEAY+VL
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           KK+YYE+LGVS  A  +EIK+AYR+L +KYHPD       E     +NEAY+VL   + R
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61

Query: 107 KDYD-----ASIGQMRFHFGTNASAGFS 129
           K YD     A  G  +   G    + F 
Sbjct: 62  KLYDQFGHAAFSGSGQQQQGQEGFSDFG 89

Length = 382

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 11/92 (11%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDL 105
           K++YYE+LGVS  A+  EIK+AYRKL  KYHPD     ++  EH   +NEAY+VL   D 
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 106 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPP 137
           R+ YD         FG +A  G S +S  GP 
Sbjct: 62  RRRYD--------QFG-HAGVGSSAASGGGPG 84

Length = 397

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 9/68 (13%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLMR 102
           K++YYE+LGVS  A+  EIK+AYRKL KKYHPDI     A +K  E    ++EAY+VL  
Sbjct: 3   KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKE----ISEAYEVLSD 58

Query: 103 GDLRKDYD 110
              R  YD
Sbjct: 59  DQKRAQYD 66

Length = 376

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 11/94 (11%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 101
           KK+YYE+LGV   A  +EIK+AYR+L KKYHPD+      A QK  E    +NEAY++L 
Sbjct: 4   KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE----INEAYEILS 59

Query: 102 RGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKG 135
               R  YD   G   F  G     GF +  + G
Sbjct: 60  DPQKRAQYD-QFGHAAFDPGGFGQGGFGQGGFGG 92

Length = 386

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKD 108
           +YYE+LGVS +A+  E+K AYR+L +KYHPD+  + G E     +N AY+VL   + R  
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63

Query: 109 YDASIGQMRF-HFGTNASAGFS 129
           YD      +F   G + +AGF 
Sbjct: 64  YD------QFGEAGVSGAAGFP 79

Length = 374

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 13/93 (13%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
            K+YY +LGV   A+  EIK+A++KL +KYHPD+    G E     +NEAY VL   + R
Sbjct: 3   YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62

Query: 107 KDYDASIGQMRFHFGTNASAGFSRSSWKGPPRP 139
           + YD         +GT A++    + W+GPP  
Sbjct: 63  RIYDT--------YGTTAAS----AGWQGPPPG 83

Length = 291

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LGV   A+ +EIK+AYRKL +KYHPD++ ++G E     ++EAY VL   + R
Sbjct: 4   KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63

Query: 107 KDYDASIGQMRFHFGTNASAGFS 129
           + YD         FG     GFS
Sbjct: 64  QRYD--------QFGHAGMDGFS 78

Length = 378

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 66.7 bits (164), Expect = 2e-12
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-IAGQKGHEHTL-LLNEAYKVLMRGDL 105
           K++YYE+LGVS  A+  EIK+AYRKL  KYHPD   G K  E     + EAY+VL     
Sbjct: 3   KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQK 62

Query: 106 RKDYD 110
           R  YD
Sbjct: 63  RAAYD 67

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
              YY+ LGVS +A+  EIK+AYRKL KKYHPDI  + G E     + EAY+ L     R
Sbjct: 3   NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKR 62

Query: 107 KDYD 110
             YD
Sbjct: 63  AAYD 66

Length = 380

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 38/79 (48%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKD 108
           +YYELLGVS  A+  EIK AYRKL  KYHPD   +KG       +NEAY VL   + R  
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 109 YDASIGQMRFHFGTNASAG 127
           YD         FGT   AG
Sbjct: 63  YD--------RFGTAPGAG 73

Length = 371

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD---IAGQKGHEHTLLLNEAYKVLM 101
            S   +YYE+LGV   A+ +EIK+AYRKL  KYHPD      +   E    +NEAY++L 
Sbjct: 2   MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61

Query: 102 RGDLRKDYDASIGQ 115
             + R +YD     
Sbjct: 62  DPERRAEYDKIGAD 75

Length = 237

>gnl|CDD|222081 pfam13370, Fer4_13, 4Fe-4S single cluster domain

 Score = 58.8 bits (143), Expect = 9e-12
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--SVDSCPVNCIHW 199
           VD + CIGC  C   A + F  D+  G + V  Q    ++      ++DSCPV  I  
Sbjct: 1   VDRDTCIGCGLCREIAPDVFAYDDDGGASVVLDQPVPEEEEAAALEALDSCPVAAIGT 58

Length = 58

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
            K+YYE+LG+   A+  EIK+A+RKL  KYHPD   G K  E     +NEAY+VL     
Sbjct: 3   SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 106 RKDYDASIGQMRFHFGT---NASAGFSRSSWKG 135
           +  YD         FGT   N + GF    + G
Sbjct: 63  KAQYD--------QFGTADFNGAGGFGSGGFGG 87

Length = 380

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 46  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGD 104
           +  ++YYE+LG+S +A+ ++IK+AYRKL  KYHPD   +   E     ++EAY VL   +
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAE 61

Query: 105 LRKDYD 110
            R  YD
Sbjct: 62  KRAQYD 67

Length = 377

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 28/118 (23%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 101
           +++YYE+LGVS +A+  EIK+AYRKL  +YHPD       A QK  E      EAY+VL 
Sbjct: 3   QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAA----EAYEVLR 58

Query: 102 RGDLRKDYD----ASIGQMRF--HFGTNASA------------GFSRSSWKGPPRPEA 141
             + R  YD    A +        F +                GFS    +  PRP+A
Sbjct: 59  DAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQA 116

Length = 373

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 13/90 (14%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-------AGQKGHEHTLLLNEAYKVL 100
           KK+YYE+LGVS  A  +EIK AY++L K++HPD        A QK  E    + EAY+VL
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKE----IQEAYEVL 58

Query: 101 MRGDLRKDYD--ASIGQMRFHFGTNASAGF 128
                R  YD    +G+   +  T +  GF
Sbjct: 59  SDPQKRAMYDRFGYVGEQPPYQETESGGGF 88

Length = 369

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 62.9 bits (152), Expect = 5e-11
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LG+  +A+ QEIK+A+RKL KKYHPD             +NEA  VL     R
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKR 60

Query: 107 KDYD 110
            +YD
Sbjct: 61  ANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDL 105
           +K+YY++LGV  +A   EIK+AYRKL ++YHPD      K  E    ++EAY VL     
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 106 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPP 137
           RK+YD +    R  FG   + GF      G  
Sbjct: 68  RKEYDEA----RSLFG---NGGFRPGPGGGGG 92

Length = 389

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLRK 107
           K+YY ++GV    + + IK AYR+L +KYHPD++ +   E     + EA++VL     R 
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63

Query: 108 DYDASIGQMRFH 119
           +YD    Q+  H
Sbjct: 64  EYD----QLWQH 71

Length = 306

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDLR 106
           K++Y+ LGVS +A+ +EIK+AYRKL ++ HPD         E    ++EA+ VL     R
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 107 KDYD------ASIGQMRFHFGTNASAG 127
           K+YD      A  G     F      G
Sbjct: 69  KEYDETRRLFAGGGFGGRRFDGGGGFG 95

Length = 392

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDLRK 107
           ++YY LLGVS  A+  EIK AYRKL ++ HPD+   ++  E    ++ AY+VL   + R+
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 108 DYD 110
             D
Sbjct: 63  IVD 65

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 37/85 (43%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQK-GHEHTLLLNEAYKVLMR 102
            ++K++YYE+LGVS  A   EIK+AYRK   +YHPD   G K   E      EAY VL  
Sbjct: 1   MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60

Query: 103 GDLRKDYDASIGQMRFHFGTNASAG 127
            D R  YD   G    H G   +AG
Sbjct: 61  PDKRSRYD-QFG----HAGVGGAAG 80

Length = 386

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 46  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRG 103
             K++YYE+LGV+ +A+ +EIK++YRKL  KYHPD   G K  E       EAY+VL   
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 104 DLRKDYDASIGQMRF-HFGTNASAGFSRSS 132
             R  YD      ++ H G +   GFS  S
Sbjct: 61  KKRGIYD------QYGHEGLS-GTGFSGFS 83

Length = 366

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLL----NEAYKVLMRG 103
           K++YYE+LG+S  A+  EIK+AYRK+  KYHPD    KG++    +     EAY+VL+  
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPD--KNKGNKEAESIFKEATEAYEVLIDD 59

Query: 104 DLRKDYDASIGQMRFHFG---TNASAGFS 129
           + R  YD   G   F  G      S GFS
Sbjct: 60  NKRAQYD-RFGHTAFEGGGGFEGFSGGFS 87

Length = 365

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 7e-09
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRGDL 105
           K+YY++LGV   A+ ++IK+A+R+L KK+HPD+      +  E    ++EAY+VL     
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 106 RKDYD 110
           R+ YD
Sbjct: 63  RRQYD 67

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDLR 106
           ++YY++LGVS  AN +EIK AYRKL  KYHPD   G K  E       EAY++L     R
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63

Query: 107 KDYDASIGQMRFHFGTNASAG 127
           + YD   G+     G NA AG
Sbjct: 64  QAYD-QFGKA----GVNAGAG 79

Length = 372

>gnl|CDD|224064 COG1141, Fer, Ferredoxin [Energy production and conversion]

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARV------KVQYGDSD-QNIEVSVDSCPVNC 196
           VD + CIGC  C+  A + F  D+  G A V      + +  +   ++ E + ++CP + 
Sbjct: 5   VDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDA 63

Query: 197 IHWVD 201
           I   +
Sbjct: 64  IKVEE 68

Length = 68

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRK 107
           ++YY++LGVS  A+  ++K+AY KL K+YHPD    K  E     +N AY VL     R 
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 108 DYD 110
            YD
Sbjct: 63  AYD 65

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDLRK 107
           +YY +LGVS  A+ +EIK+AYRKL  KYHPD   G    E     ++EAY+VL     R+
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 108 DYD 110
            YD
Sbjct: 62  SYD 64

Length = 391

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 39  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYK 98
           GR       +K  YE+L +S +    EIK+AYRKL  K+HPD  G    E    ++ AY+
Sbjct: 19  GRRKREVDNEK-LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP--EKFKEISRAYE 75

Query: 99  VLMRGDLRKDYD 110
           VL   + RK YD
Sbjct: 76  VLSDPEKRKIYD 87

Length = 421

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 106
           K++YYE+LGV   A+  E+K+AYRKL +KYHPD+      E     + EAY  L     +
Sbjct: 3   KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62

Query: 107 KDYD 110
             YD
Sbjct: 63  AHYD 66

Length = 371

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTL-LLNEAYKVLMRGDLRK 107
           +YYE+L V   +N + IK++YRKL  KYHPD  AG K  E    L+NEAY VL     R 
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 108 DYD 110
            YD
Sbjct: 64  LYD 66

Length = 369

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 52  YELLGVSVEANGQEIKEAYRKLQKKYHPD 80
           Y++LGVS   + QEIK AYRKL  ++HPD
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|233648 TIGR01944, rnfB, electron transport complex, RnfABCDGE type, B subunit

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 25/72 (34%)

Query: 137 PRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSDQNI 185
             P    +DE+ CIGC +C+             A +T + DE TGC              
Sbjct: 103 QPPMVALIDEDNCIGCTKCIQACPVDAIVGAAKAMHTVIADECTGC-------------- 148

Query: 186 EVSVDSCPVNCI 197
           ++ V+ CP +CI
Sbjct: 149 DLCVEPCPTDCI 160

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit [Energy metabolism, Electron transport]. Length = 165

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 51  YYELLGVSVEANGQEIKEAYRKLQKKYHP-DIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109
           +Y++LGV V A+ +EI E Y KL + Y+P   +G +G      +NEAY++L   D +K Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Query: 110 D 110
           +
Sbjct: 635 N 635

Length = 1136

>gnl|CDD|235347 PRK05113, PRK05113, electron transport complex protein RnfB; Provisional

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 25/72 (34%)

Query: 137 PRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSDQNI 185
           P  +  F+DE+ CIGC +C+             A +T + D  TGC              
Sbjct: 104 PARKVAFIDEDNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTGC-------------- 149

Query: 186 EVSVDSCPVNCI 197
           ++ V  CP +CI
Sbjct: 150 DLCVAPCPTDCI 161

Length = 191

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 52  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGD 104
           YE+LG+  + + ++IK+ YR L  K+HPD A            E    + +AY +L    
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 105 LRKDY 109
            R++Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|225433 COG2878, COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 25/79 (31%)

Query: 131 SSWKGPPRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYG 179
           S            +DE  CIGC +C+             A +T + D  TGC        
Sbjct: 99  SEHGEEQARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTGC-------- 150

Query: 180 DSDQNIEVSVDSCPVNCIH 198
                 ++ V  CP +CI 
Sbjct: 151 ------DLCVAPCPTDCIE 163

Length = 198

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 26/75 (34%)

Query: 135 GPPRPEAL-FVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSD 182
           G  RP A+  +DE  CIGC  C+               +T + D  TGC           
Sbjct: 72  GVERPRAVAVIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVLADLCTGC----------- 120

Query: 183 QNIEVSVDSCPVNCI 197
              ++ V  CPV+CI
Sbjct: 121 ---DLCVPPCPVDCI 132

Length = 270

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 17/64 (26%)

Query: 50  NYYELLGVSV--EANGQEIKEAYRKLQKKYHPD-----------IAGQKGHEHTLLLNEA 96
           +Y+ L G+    + + Q +   Y++LQ+++HPD           +A Q+       +N+A
Sbjct: 2   DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQ----AATINDA 57

Query: 97  YKVL 100
           Y+ L
Sbjct: 58  YQTL 61

Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	99.98
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.97
PRK14276	380	chaperone protein DnaJ; Provisional	99.97
PRK14278	378	chaperone protein DnaJ; Provisional	99.97
PRK14280	376	chaperone protein DnaJ; Provisional	99.97
PRK14297	380	chaperone protein DnaJ; Provisional	99.97
PRK14279	392	chaperone protein DnaJ; Provisional	99.97
PRK14291	382	chaperone protein DnaJ; Provisional	99.97
PRK14277	386	chaperone protein DnaJ; Provisional	99.97
PRK14286	372	chaperone protein DnaJ; Provisional	99.97
PRK14285	365	chaperone protein DnaJ; Provisional	99.97
PRK14294	366	chaperone protein DnaJ; Provisional	99.97
PRK14284	391	chaperone protein DnaJ; Provisional	99.97
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.97
PRK14283	378	chaperone protein DnaJ; Provisional	99.97
PRK14290	365	chaperone protein DnaJ; Provisional	99.97
PRK14301	373	chaperone protein DnaJ; Provisional	99.97
PRK10767	371	chaperone protein DnaJ; Provisional	99.97
PRK14281	397	chaperone protein DnaJ; Provisional	99.97
PRK14295	389	chaperone protein DnaJ; Provisional	99.97
PRK14289	386	chaperone protein DnaJ; Provisional	99.96
PRK14292	371	chaperone protein DnaJ; Provisional	99.96
PRK14293	374	chaperone protein DnaJ; Provisional	99.96
PRK14300	372	chaperone protein DnaJ; Provisional	99.96
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.93
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.92
PRK14299	291	chaperone protein DnaJ; Provisional	99.88
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.87
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.69
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.66
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.63
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.62
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.61
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.6
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.58
PHA03102	153	Small T antigen; Reviewed	99.58
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.57
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.51
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.48
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.47
PRK05014	171	hscB co-chaperone HscB; Provisional	99.42
PRK01356	166	hscB co-chaperone HscB; Provisional	99.39
PRK00294	173	hscB co-chaperone HscB; Provisional	99.36
PRK03578	176	hscB co-chaperone HscB; Provisional	99.35
PTZ00100	116	DnaJ chaperone protein; Provisional	99.34
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.34
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.27
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.27
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.23
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.2
PHA02624	647	large T antigen; Provisional	99.14
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.03
PRK01773	173	hscB co-chaperone HscB; Provisional	99.01
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.85
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.78
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.59
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.33
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.23
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.09
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	97.94
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	97.88
COG1141	68	Fer Ferredoxin [Energy production and conversion]	97.88
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.17
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.04
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	95.02
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.93
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	94.9
PRK14300	372	chaperone protein DnaJ; Provisional	94.75
KOG0431	453	consensus Auxilin-like protein and related protein	94.66
PRK14284	391	chaperone protein DnaJ; Provisional	94.63
PRK14285	365	chaperone protein DnaJ; Provisional	94.54
PRK14295	389	chaperone protein DnaJ; Provisional	94.45
PRK14282	369	chaperone protein DnaJ; Provisional	94.36
PRK14278	378	chaperone protein DnaJ; Provisional	94.34
PRK14291	382	chaperone protein DnaJ; Provisional	94.23
PRK14301	373	chaperone protein DnaJ; Provisional	93.87
PRK14290	365	chaperone protein DnaJ; Provisional	93.8
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	93.69
PRK14298	377	chaperone protein DnaJ; Provisional	93.67
PRK14281	397	chaperone protein DnaJ; Provisional	93.65
PRK14286	372	chaperone protein DnaJ; Provisional	93.51
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	93.27
PRK14279	392	chaperone protein DnaJ; Provisional	93.06
PRK14294	366	chaperone protein DnaJ; Provisional	93.01
PRK14288	369	chaperone protein DnaJ; Provisional	92.92
PRK14280	376	chaperone protein DnaJ; Provisional	92.82
PRK14297	380	chaperone protein DnaJ; Provisional	92.82
PRK14289	386	chaperone protein DnaJ; Provisional	92.68
PRK14276	380	chaperone protein DnaJ; Provisional	92.68
PRK10767	371	chaperone protein DnaJ; Provisional	92.56
PRK14277	386	chaperone protein DnaJ; Provisional	92.49
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	92.4
PRK14287	371	chaperone protein DnaJ; Provisional	91.78
PLN03165	111	chaperone protein dnaJ-related; Provisional	91.67
PRK14283	378	chaperone protein DnaJ; Provisional	91.47
PRK14296	372	chaperone protein DnaJ; Provisional	91.46
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	90.07
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	89.84
PTZ00037	421	DnaJ_C chaperone protein; Provisional	89.58
PRK14293	374	chaperone protein DnaJ; Provisional	89.32
PF06902	64	Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro:	88.32
PRK14292	371	chaperone protein DnaJ; Provisional	87.8
PF13446	62	RPT: A repeated domain in UCH-protein	85.2
KOG0724	335	consensus Zuotin and related molecular chaperones	80.76
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	80.27

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-41  Score=319.67  Aligned_cols=207  Identities=24%  Similarity=0.295  Sum_probs=163.0

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-cchHHHHHHHHHHhhhhccccccccccccccccc--ccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG-Q-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG  121 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~  121 (301)
                      ++.+|||+||||+++||.+|||+|||+||++||||+|+ + +++++|++|++||||||||++|++||+++.....  +++
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            35789999999999999999999999999999999999 3 4778999999999999999999999999854421  222


Q ss_pred             c---c------------CCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCcc------ccc
Q 022195          122 T---N------------ASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASN  161 (301)
Q Consensus       122 ~---~------------~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~  161 (301)
                      .   +            +|+|.+.  ..-..+.++.|+..+                 ..+-..|..|.++      .+.
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~  160 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK  160 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence            1   1            1111111  111234456666543                 2234556666655      678


Q ss_pred             eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-----
Q 022195          162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-----  226 (301)
Q Consensus       162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-----  226 (301)
                      +|..|+|.|..+..++.  +..+++++|+.|.|          .|.|.+.+.+.+.|+|.||+|+.+|++|+..|     
T Consensus       161 tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g  238 (371)
T COG0484         161 TCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAG  238 (371)
T ss_pred             cCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccC
Confidence            99999999999888877  67788999999998          79999999999999999999999999996444     


Q ss_pred             --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 --WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 --~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                        ++.++|+||.+.+..+..++|..+||+-
T Consensus       239 ~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~  268 (371)
T COG0484         239 PNGGPAGDLYVFVHVKPHPIFERDGDDLYC  268 (371)
T ss_pred             CCCCCCccEEEEEEeecCCCeEECCCceEe
Confidence              4557999999988777777777777775

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=4.6e-35  Score=284.59  Aligned_cols=208  Identities=25%  Similarity=0.249  Sum_probs=158.8

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccccccccc-cc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH-FG  121 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~-~~  121 (301)
                      ++.+...|||+||||+++||.+|||+|||+||++||||++++  .++|++|++||++|+||.+|+.||.++.....+ .+
T Consensus        22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~--~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~   99 (421)
T PTZ00037         22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD--PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQ   99 (421)
T ss_pred             cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch--HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCC
Confidence            455557899999999999999999999999999999999864  589999999999999999999999987532110 00


Q ss_pred             --------ccCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc-----cceeeeeCCcce
Q 022195          122 --------TNASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-----SNTFVMDEATGC  171 (301)
Q Consensus       122 --------~~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a-----p~tf~~c~g~G~  171 (301)
                              ..+|++.+  ...++.++.|+.+.                 ..+-+.|..|.+++     +.+|..|.|.|.
T Consensus       100 ~~d~~d~f~~~Fggg~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~  177 (421)
T PTZ00037        100 PADASDLFDLIFGGGR--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGI  177 (421)
T ss_pred             CcchhhhHHHhhcccc--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCe
Confidence                    01122111  01123345555432                 22344566665543     568999999999


Q ss_pred             EEEEEeeCCccccccccccCCCc------------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCCCCce
Q 022195          172 ARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANV  233 (301)
Q Consensus       172 ~~v~~q~g~~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~~~~v  233 (301)
                      ...+++.+++.++++.+|+.|.|            .|.|.+++.+.+.|+|.||+|+++|++|...|      ++.||||
T Consensus       178 ~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDL  257 (421)
T PTZ00037        178 RVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNV  257 (421)
T ss_pred             EEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcE
Confidence            88888888888889999999977            58889999999999999999999999996544      3568999


Q ss_pred             ehhhHHHHHHHHHHhhCCCCC
Q 022195          234 FMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       234 fv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ++......+..++|+..||+-
T Consensus       258 iv~I~~~ph~~F~R~G~DL~~  278 (421)
T PTZ00037        258 VFILNEKPHDTFKREGGDLFI  278 (421)
T ss_pred             EEEEEecCCCCcEEeCCeEEE
Confidence            998866666666677777776

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-34  Score=278.71  Aligned_cols=207  Identities=25%  Similarity=0.306  Sum_probs=154.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc---c----
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H----  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~----  119 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++ ++++|++|++||+||+||.+|+.||+++.....   +    
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~   82 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence            57999999999999999999999999999999999754 567999999999999999999999998753210   1    


Q ss_pred             ccc--c--------CCCCc--ccccC--------CCCCCCCccccc-----------------ccccccCCCCCcc----
Q 022195          120 FGT--N--------ASAGF--SRSSW--------KGPPRPEALFVD-----------------ENACIGCRECVHH----  158 (301)
Q Consensus       120 ~~~--~--------~f~g~--g~~~~--------~gp~r~~difvd-----------------e~~CigC~~C~g~----  158 (301)
                      |+.  .        .+.++  -++.+        ..+.++.|+.+.                 ..+.+.|..|.++    
T Consensus        83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~  162 (372)
T PRK14296         83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAES  162 (372)
T ss_pred             CCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCC
Confidence            110  0        00000  01111        122344455432                 2234556666654    


Q ss_pred             --ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC
Q 022195          159 --ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG  226 (301)
Q Consensus       159 --ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G  226 (301)
                        .+.+|..|.|.|.....++.|++..+++.+|+.|.|          .|.+.+++.+.+.++|.||+|+++|++|...|
T Consensus       163 ~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g  242 (372)
T PRK14296        163 NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQ  242 (372)
T ss_pred             CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEec
Confidence              356899999999999989999987788999999987          68999999999999999999999999996544


Q ss_pred             -------CCCCCceehhhHHHHHHHHHH-hhCCCCC
Q 022195          227 -------WERPANVFMAAKAFNKQLQQQ-AAGGSNP  254 (301)
Q Consensus       227 -------~~~~~~vfv~~~~~~~~~~~~-~~~~~~~  254 (301)
                             ++.+|||++..+...+..+++ ..+|||-
T Consensus       243 ~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~  278 (372)
T PRK14296        243 KGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILM  278 (372)
T ss_pred             cccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEE
Confidence                   245789999986655444444 4567775

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.1e-34  Score=274.50  Aligned_cols=207  Identities=21%  Similarity=0.270  Sum_probs=157.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-c------
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-H------  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~------  119 (301)
                      ..|||+||||+++|+.+|||+|||+||++||||++++. ++++|++|++||++|+||.+|..||+++..... +      
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            46999999999999999999999999999999999754 567999999999999999999999998753211 0      


Q ss_pred             ccc-----------cCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc------cceeee
Q 022195          120 FGT-----------NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVM  165 (301)
Q Consensus       120 ~~~-----------~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf~~  165 (301)
                      |+.           .+|++.+.....++.++.|+.+.                 ..+.+.|..|.+.+      +.+|..
T Consensus        84 ~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~  163 (377)
T PRK14298         84 FRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT  163 (377)
T ss_pred             cccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC
Confidence            110           01111100001223455555533                 22456677776653      468999


Q ss_pred             eCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CC
Q 022195          166 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WE  228 (301)
Q Consensus       166 c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~  228 (301)
                      |.|.|.....++.+.+.++++.+|+.|.|          .|.|.+.+.+.+.|+|.||||+++|++|...|       ++
T Consensus       164 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~  243 (377)
T PRK14298        164 CGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGA  243 (377)
T ss_pred             CCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCC
Confidence            99999888887766677789999999988          68999999999999999999999999996554       24


Q ss_pred             CCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          229 RPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       229 ~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      .+||||+......+..++++.+||+-
T Consensus       244 ~~GDL~i~i~v~~h~~F~R~G~DL~~  269 (377)
T PRK14298        244 PSGDLYIVLHVKEHDYFERVGDDIIS  269 (377)
T ss_pred             CCcCEEEEEEEecCCCeEEEcCcEEE
Confidence            57899999876666666677777765

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.5e-34  Score=272.72  Aligned_cols=203  Identities=20%  Similarity=0.220  Sum_probs=147.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccccc-------
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------  118 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-------  118 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+++.  .++++|++|++||+||+||.+|..||+++.....       
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~   81 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS   81 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence            4799999999999999999999999999999999974  3667999999999999999999999998753211       


Q ss_pred             cccc----------cCCCCccccc-CCCCCCCCccccc-----------------ccccccCCCCCccc-----cceeee
Q 022195          119 HFGT----------NASAGFSRSS-WKGPPRPEALFVD-----------------ENACIGCRECVHHA-----SNTFVM  165 (301)
Q Consensus       119 ~~~~----------~~f~g~g~~~-~~gp~r~~difvd-----------------e~~CigC~~C~g~a-----p~tf~~  165 (301)
                      +|..          .+|++.+... -..+.++.++.+.                 ..+...|..|.+++     +.+|..
T Consensus        82 ~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~  161 (369)
T PRK14288         82 DFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQ  161 (369)
T ss_pred             ccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCC
Confidence            1110          0011000000 0112334444432                 12344666666543     568999


Q ss_pred             eCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCC
Q 022195          166 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WER  229 (301)
Q Consensus       166 c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~  229 (301)
                      |.|.|.....+  |.+  +++.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...|      ++.
T Consensus       162 C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~  237 (369)
T PRK14288        162 CNGQGQVFMRQ--GFM--SFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGK  237 (369)
T ss_pred             CCCCcEEEEEe--ceE--EEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCC
Confidence            99999755433  433  56679999988          68999999999999999999999999997554      345


Q ss_pred             CCceehhhHHHHHHHHHHhhCCCCC
Q 022195          230 PANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       230 ~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +|||++......+..++++.+||+-
T Consensus       238 ~GDL~v~i~v~~h~~f~R~G~DL~~  262 (369)
T PRK14288        238 RGDLYLEARVKEDEHFKREGCDLFI  262 (369)
T ss_pred             CCCEEEEEEEEECCCcEEeCCEEEE
Confidence            7899999876665566666766664

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-33  Score=269.90  Aligned_cols=208  Identities=21%  Similarity=0.168  Sum_probs=155.3

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc-----
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-----  118 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-----  118 (301)
                      ...|||+||||+++||.+|||+|||+||++||||+++..   +.++|++|++||++|+||.+|..||+++.....     
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~   81 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE   81 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence            357999999999999999999999999999999999743   567999999999999999999999998743211     


Q ss_pred             -----cc-cc---------------cCCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCcc
Q 022195          119 -----HF-GT---------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH  158 (301)
Q Consensus       119 -----~~-~~---------------~~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~  158 (301)
                           +| +.               .+|++.+.  .....+.++.|+.+.                 ..+.+.|..|.++
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~  161 (369)
T PRK14282         82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGT  161 (369)
T ss_pred             CCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCcc
Confidence                 10 00               00111000  000112344555432                 2234556666554


Q ss_pred             ------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEE
Q 022195          159 ------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGV  222 (301)
Q Consensus       159 ------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I  222 (301)
                            .+.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|
T Consensus       162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  241 (369)
T PRK14282        162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL  241 (369)
T ss_pred             CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence                  356899999999998888888766667889999987          6899999999999999999999999999


Q ss_pred             ecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          223 FGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       223 ~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ...|       ++.++|||+..+...+..++++.+|++-
T Consensus       242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~  280 (369)
T PRK14282        242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIY  280 (369)
T ss_pred             EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEE
Confidence            6554       2456899999876666666677777765

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.98  E-value=4.2e-33  Score=267.75  Aligned_cols=207  Identities=20%  Similarity=0.238  Sum_probs=153.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cc---c-
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF---G-  121 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~---~-  121 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.+ ++++|++|++||++|+||.+|+.||+++..... ++   + 
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            46999999999999999999999999999999999753 557999999999999999999999998753211 11   0 


Q ss_pred             ----------ccCCCCccc-ccCCCCCCCCccccc-----------------ccccccCCCCCccc------cceeeeeC
Q 022195          122 ----------TNASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVMDE  167 (301)
Q Consensus       122 ----------~~~f~g~g~-~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf~~c~  167 (301)
                                ..+|++.+. .....+.++.|+.+.                 ..+-+.|..|.+.+      +.+|..|.
T Consensus        83 ~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~  162 (371)
T PRK14287         83 GDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG  162 (371)
T ss_pred             ccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCC
Confidence                      011221110 000123344555433                 12334566665543      56899999


Q ss_pred             CcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCCC
Q 022195          168 ATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WERP  230 (301)
Q Consensus       168 g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~  230 (301)
                      |.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...|       ++.+
T Consensus       163 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~  242 (371)
T PRK14287        163 GSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPP  242 (371)
T ss_pred             CEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCC
Confidence            999888888887766666889999987          58888998889999999999999999996544       2457


Q ss_pred             CceehhhHHHHHHHHHHhhCCCCC
Q 022195          231 ANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       231 ~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ||++|..+...+..++|+.+||+-
T Consensus       243 GDL~v~i~v~~h~~F~R~G~DL~~  266 (371)
T PRK14287        243 GDLYVVFNVKPHEFFERDGDDIYC  266 (371)
T ss_pred             ccEEEEEEEecCCCEEEecCCeEE
Confidence            899998866655556666777765

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-32  Score=256.12  Aligned_cols=206  Identities=24%  Similarity=0.315  Sum_probs=154.3

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccccccccc--ccc--
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH--FGT--  122 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~--~~~--  122 (301)
                      .++.||+||||+++||.+|||+|||+||++||||+|++ +.++|++|.+||+|||||++|.+||+++......  ++.  
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~   80 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF   80 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence            46789999999999999999999999999999999987 6789999999999999999999999998654321  111  


Q ss_pred             ----cCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCcccc-----ceeeeeCCcceEEEEE
Q 022195          123 ----NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHAS-----NTFVMDEATGCARVKV  176 (301)
Q Consensus       123 ----~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~ap-----~tf~~c~g~G~~~v~~  176 (301)
                          .+|+ +++...+++.++.++-++                 ...-.-|..|.+..+     ..|..|.+.|....++
T Consensus        81 ~~f~~~F~-~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~  159 (337)
T KOG0712|consen   81 GGFSQFFG-FGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTR  159 (337)
T ss_pred             ccHHHhcc-CCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEE
Confidence                1122 222222333334444322                 223445555554433     2699999999999999


Q ss_pred             eeCC-ccccccccccCCCc------------ceeeceeeccccEEEEEeCCCCCCCcEEe--cCCC----CCCCceehhh
Q 022195          177 QYGD-SDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVF--GGGW----ERPANVFMAA  237 (301)
Q Consensus       177 q~g~-~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~--g~G~----~~~~~vfv~~  237 (301)
                      ++++ +.++++..|..|.|            .|++.+++++.++|+|+|++|++++++|.  +.+.    --|+|+.+..
T Consensus       160 ~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i  239 (337)
T KOG0712|consen  160 QMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLI  239 (337)
T ss_pred             eccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEe
Confidence            9999 99999999999988            69999999999999999999999999994  4442    2366766666


Q ss_pred             HHHHHHHHHHhhCCCCC
Q 022195          238 KAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       238 ~~~~~~~~~~~~~~~~~  254 (301)
                      ...++..+.+..+||..
T Consensus       240 ~~k~h~~F~Rrg~dL~~  256 (337)
T KOG0712|consen  240 DQKEHPGFDRRGSDLYR  256 (337)
T ss_pred             cccccccceecccccce
Confidence            55444444444544444

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.2e-32  Score=265.44  Aligned_cols=207  Identities=24%  Similarity=0.276  Sum_probs=154.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cccc---
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGT---  122 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~~~---  122 (301)
                      ..|||+||||+++||.+|||+|||+||++||||++++. +.++|++|++||++|+||.+|..||+++..... +++.   
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            47999999999999999999999999999999999754 567999999999999999999999998753211 0000   


Q ss_pred             -------------------cCCCCccc-ccCCCCCCCCccccc-----------------ccccccCCCCCccc------
Q 022195          123 -------------------NASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------  159 (301)
Q Consensus       123 -------------------~~f~g~g~-~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------  159 (301)
                                         .+|++.+. .....+.++.|+.+.                 ...-+.|..|.+.+      
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~  162 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS  162 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence                               01111000 000112344555432                 12344566666543      


Q ss_pred             cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC---
Q 022195          160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---  226 (301)
Q Consensus       160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G---  226 (301)
                      +.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.|.+.+.+.+.|+|.||+|+++|++|...|   
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~  242 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE  242 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence            56899999999998888887755566889999988          58999999999999999999999999996444   


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                          ++.+|||+|..+...+..++|+.+||+-
T Consensus       243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  274 (380)
T PRK14276        243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYY  274 (380)
T ss_pred             CCCCCCCCcCEEEEEEEEECcceeeecceEEE
Confidence                2356899999877666666667777765

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.9e-32  Score=263.86  Aligned_cols=206  Identities=18%  Similarity=0.213  Sum_probs=152.9

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc------ccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------HFG  121 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~~~  121 (301)
                      .|||+||||+++||.+|||+|||+||++||||++++. ++++|++|++||+||+||.+|..||+++.....      +++
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            6999999999999999999999999999999999854 457999999999999999999999998743110      111


Q ss_pred             ----------ccCCCCcccc-c-CCCCCCCCccccc-----------------ccccccCCCCCcc------ccceeeee
Q 022195          122 ----------TNASAGFSRS-S-WKGPPRPEALFVD-----------------ENACIGCRECVHH------ASNTFVMD  166 (301)
Q Consensus       122 ----------~~~f~g~g~~-~-~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~tf~~c  166 (301)
                                ..+|++.+.+ . ...+.++.|+.+.                 ...-+.|..|.++      .+.+|..|
T Consensus        83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C  162 (378)
T PRK14278         83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTC  162 (378)
T ss_pred             cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCc
Confidence                      0112211100 0 0012344555432                 1234456666654      35689999


Q ss_pred             CCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCC
Q 022195          167 EATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WER  229 (301)
Q Consensus       167 ~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~  229 (301)
                      .|.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|...|       ++.
T Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~  242 (378)
T PRK14278        163 GGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP  242 (378)
T ss_pred             cCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence            9999888777766655567789999987          68999999999999999999999999997554       245


Q ss_pred             CCceehhhHHHHHHHHHHhhCCCCC
Q 022195          230 PANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       230 ~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +|||++..+...+..++|+.+||+-
T Consensus       243 ~GDL~v~i~~~~h~~F~R~G~DL~~  267 (378)
T PRK14278        243 AGDLYVEVHEQPHDVFVRDGDDLHC  267 (378)
T ss_pred             CCCEEEEEEECcCCCEEEcCCCEEE
Confidence            6899999876666666667767664

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.2e-32  Score=264.99  Aligned_cols=207  Identities=24%  Similarity=0.286  Sum_probs=155.7

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cc-----
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF-----  120 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~-----  120 (301)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++..... ++     
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~   82 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF   82 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence            46999999999999999999999999999999999754 567999999999999999999999998753211 01     


Q ss_pred             cc--------------cCCCCcccc-cCCCCCCCCccccc-----------------ccccccCCCCCccc------cce
Q 022195          121 GT--------------NASAGFSRS-SWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNT  162 (301)
Q Consensus       121 ~~--------------~~f~g~g~~-~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~t  162 (301)
                      +.              .+|++.+.. ....+.++.|+.+.                 ..+-+.|..|.+++      +.+
T Consensus        83 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  162 (376)
T PRK14280         83 GGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET  162 (376)
T ss_pred             CCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence            00              011110000 00112344555433                 12345566666543      568


Q ss_pred             eeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------
Q 022195          163 FVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------  226 (301)
Q Consensus       163 f~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------  226 (301)
                      |..|.|.|.....++.++...+++.+|+.|.|          .|.+.+.+.+.+.|+|.||+|+++|++|...|      
T Consensus       163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~  242 (376)
T PRK14280        163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV  242 (376)
T ss_pred             CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence            99999999988888777766667889999988          58999999999999999999999999997554      


Q ss_pred             -CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 -WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 -~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                       .+.+||++|..+...+..++|+.+|||-
T Consensus       243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  271 (376)
T PRK14280        243 NGGPAGDLYVVFRVRPHEFFERDGDDIYC  271 (376)
T ss_pred             CCCCCcCEEEEEEEecCCCeEEecCCEEE
Confidence             2356899999977666667777777775

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=3.1e-32  Score=262.58  Aligned_cols=207  Identities=23%  Similarity=0.259  Sum_probs=154.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc-------
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------  118 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-------  118 (301)
                      ..|||+||||+++|+.+|||+|||+||++||||+++..  ++++|++|++||++|+||.+|..||+++.....       
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            46999999999999999999999999999999999743  567999999999999999999999998753211       


Q ss_pred             -cccc--------------cCCCCc-ccc--cCCCCCCCCccccc-----------------ccccccCCCCCccc----
Q 022195          119 -HFGT--------------NASAGF-SRS--SWKGPPRPEALFVD-----------------ENACIGCRECVHHA----  159 (301)
Q Consensus       119 -~~~~--------------~~f~g~-g~~--~~~gp~r~~difvd-----------------e~~CigC~~C~g~a----  159 (301)
                       +|+.              .+|++. +..  ....+.++.|+.+.                 ..+-+.|..|.+.+    
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~  162 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPG  162 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCC
Confidence             1100              011110 000  00122344555433                 12344566665543    


Q ss_pred             --cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-
Q 022195          160 --SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-  226 (301)
Q Consensus       160 --p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-  226 (301)
                        +.+|..|.|.|.....++.++...+++..|+.|.|          .|.+.+.+.+.+.++|.||+|+++|++|...| 
T Consensus       163 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~  242 (380)
T PRK14297        163 TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ  242 (380)
T ss_pred             CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence              56899999999988888887766678899999988          58888888899999999999999999996444 


Q ss_pred             ------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                            ++.++|||+..+...+..++++.+||+-
T Consensus       243 G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~  276 (380)
T PRK14297        243 GEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYI  276 (380)
T ss_pred             ccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEE
Confidence                  2347899999877666666666767765

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=4.3e-32  Score=262.39  Aligned_cols=203  Identities=21%  Similarity=0.284  Sum_probs=147.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccc----c--c--
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ----M--R--  117 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~----~--~--  117 (301)
                      .+|||+||||+++|+.+|||+|||+||++||||+++.+  +.++|++|++||+||+||++|+.||+++..    .  .  
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~   87 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR   87 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence            57999999999999999999999999999999999743  567999999999999999999999998531    0  0  


Q ss_pred             ----ccccc---c----------CCC--------C--cccccC----------CCCCCCCccccc---------------
Q 022195          118 ----FHFGT---N----------ASA--------G--FSRSSW----------KGPPRPEALFVD---------------  145 (301)
Q Consensus       118 ----~~~~~---~----------~f~--------g--~g~~~~----------~gp~r~~difvd---------------  145 (301)
                          .+++.   +          .|+        +  .-|+.+          ..+.++.|+.+.               
T Consensus        88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~  167 (392)
T PRK14279         88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMP  167 (392)
T ss_pred             ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEE
Confidence                00000   0          000        0  000110          112344455433               


Q ss_pred             --ccccccCCCCCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccE
Q 022195          146 --ENACIGCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPV  207 (301)
Q Consensus       146 --e~~CigC~~C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~  207 (301)
                        ..+-+.|..|.+++      +.+|..|.|.|.....  .+.+  +++.+|+.|.|          .|.+.+++.+.+.
T Consensus       168 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~--~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~  243 (392)
T PRK14279        168 LRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN--QGAF--GFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRT  243 (392)
T ss_pred             EeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEE--ecce--EEEEecCCCCceeEEeCCcCCCCCCCeEEEEeee
Confidence              22345666666543      5689999998865443  3433  46799999988          6899999999999


Q ss_pred             EEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          208 LEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ++|.||||+++|++|...|       ++.++||++..+...+..++++.+|++-
T Consensus       244 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~  297 (392)
T PRK14279        244 INVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTV  297 (392)
T ss_pred             eEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEE
Confidence            9999999999999997554       2346899999876666666677767765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=9.1e-32  Score=259.45  Aligned_cols=203  Identities=25%  Similarity=0.317  Sum_probs=147.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc--------
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------  118 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--------  118 (301)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++ +.++|++|++||++|+||.+|..||.++.....        
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            47999999999999999999999999999999999854 567999999999999999999999997743210        


Q ss_pred             --cccc-----------cC---CC-Cccccc-----C-----CCCCCCCccccc-----------------ccccccCCC
Q 022195          119 --HFGT-----------NA---SA-GFSRSS-----W-----KGPPRPEALFVD-----------------ENACIGCRE  154 (301)
Q Consensus       119 --~~~~-----------~~---f~-g~g~~~-----~-----~gp~r~~difvd-----------------e~~CigC~~  154 (301)
                        +++.           .+   |+ +..+..     .     ..+.++.|+.+.                 ..+-+.|..
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  161 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA  161 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence              0100           00   00 000000     0     112244555433                 123455666


Q ss_pred             CCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc---------ceeeceeeccccEEEEEeCCCCCCC
Q 022195          155 CVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV---------NCIHWVDREELPVLEFLIQPQPKKG  219 (301)
Q Consensus       155 C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg---------~Cig~~~~~e~k~LeV~Ip~G~~dG  219 (301)
                      |.+.+      +.+|..|.|.|.....  .  +..+++.+|+.|.|         .|.+.+++.+.+.|+|.||||+++|
T Consensus       162 C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  237 (382)
T PRK14291        162 CGGTGYDPGSGEKVCPTCGGSGEIYQR--G--GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG  237 (382)
T ss_pred             CccccCCCCCCCccCCCCCCceEEEEe--c--ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence            66543      5689999998865443  2  33467889999987         6899999999999999999999999


Q ss_pred             cEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          220 YGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       220 ~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ++|...|       ++.++|||+..+...+..++++.+|++-
T Consensus       238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~  279 (382)
T PRK14291        238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYL  279 (382)
T ss_pred             CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEE
Confidence            9996544       2468899999876666666667766665

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=8.2e-32  Score=260.11  Aligned_cols=207  Identities=24%  Similarity=0.291  Sum_probs=153.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--ccc--
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG--  121 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~--  121 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+++.+  ++++|++|++||++|+||.+|..||.++.....  +++  
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG   83 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence            47999999999999999999999999999999999743  567999999999999999999999997743211  000  


Q ss_pred             ----cc-------------------CCCCc-cccc---CCCCCCCCccccc-----------------ccccccCCCCCc
Q 022195          122 ----TN-------------------ASAGF-SRSS---WKGPPRPEALFVD-----------------ENACIGCRECVH  157 (301)
Q Consensus       122 ----~~-------------------~f~g~-g~~~---~~gp~r~~difvd-----------------e~~CigC~~C~g  157 (301)
                          .+                   +|+++ +...   ..++.++.++.+.                 ..+-+.|..|.+
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G  163 (386)
T PRK14277         84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKG  163 (386)
T ss_pred             CcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCC
Confidence                00                   01100 0000   0112344555432                 123345556654


Q ss_pred             c------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcE
Q 022195          158 H------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYG  221 (301)
Q Consensus       158 ~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~  221 (301)
                      .      .+.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++
T Consensus       164 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  243 (386)
T PRK14277        164 SGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQM  243 (386)
T ss_pred             CCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcE
Confidence            3      357899999999888888887766666689999988          689999999999999999999999999


Q ss_pred             EecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          222 VFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       222 I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      |...|       ++.+||+||..+...+..++++.+||+-
T Consensus       244 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  283 (386)
T PRK14277        244 ITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYL  283 (386)
T ss_pred             EEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEE
Confidence            96554       2346899999977666666777777765

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=6e-32  Score=259.85  Aligned_cols=203  Identities=25%  Similarity=0.321  Sum_probs=148.6

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccccc----ccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----HFG  121 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~----~~~  121 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+++.  .+.++|++|++||+||+||.+|..||+++.....    +++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence            4799999999999999999999999999999999974  3567999999999999999999999998743210    000


Q ss_pred             c------------------cCCCCcc-c----ccCCCCCCCCccccc-----------------ccccccCCCCCccc--
Q 022195          122 T------------------NASAGFS-R----SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA--  159 (301)
Q Consensus       122 ~------------------~~f~g~g-~----~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a--  159 (301)
                      .                  .+|++.+ .    .....+.++.|+.+.                 ..+-+.|..|.+++  
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~  162 (372)
T PRK14286         83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS  162 (372)
T ss_pred             CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence            0                  0111100 0    000123345555533                 12345566666543  


Q ss_pred             ----cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecC
Q 022195          160 ----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGG  225 (301)
Q Consensus       160 ----p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~  225 (301)
                          +.+|..|.|.|.....  .|.+  +++.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...
T Consensus       163 ~~~~~~~C~~C~G~G~v~~~--~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~  238 (372)
T PRK14286        163 KGSSPTTCPDCGGSGQIRRT--QGFF--SVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS  238 (372)
T ss_pred             CCCCCccCCCCcCeEEEEEE--eceE--EEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence                4688999988865443  3433  47789999988          5899999999999999999999999999755


Q ss_pred             C-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          226 G-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       226 G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      |       ++.++|+|+..+...+..++|+.+||+-
T Consensus       239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~  274 (372)
T PRK14286        239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLIL  274 (372)
T ss_pred             CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEE
Confidence            4       2346899999977666667777777765

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=7.4e-32  Score=258.62  Aligned_cols=203  Identities=20%  Similarity=0.263  Sum_probs=147.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc---c---
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H---  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~---  119 (301)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.+  +.++|++|++||++|+||.+|..||+++.....   +   
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            36999999999999999999999999999999999753  567999999999999999999999998753211   0   


Q ss_pred             cccc-----------------CCCCc-ccccCCCCCCCCccccc-----------------ccccccCCCCCccc-----
Q 022195          120 FGTN-----------------ASAGF-SRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-----  159 (301)
Q Consensus       120 ~~~~-----------------~f~g~-g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a-----  159 (301)
                      +..+                 +|++. +...-..+.++.|+.+.                 ..+-+.|..|.+++     
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  161 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT  161 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence            0000                 01100 00000112345555533                 12345666666653     


Q ss_pred             -cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC--
Q 022195          160 -SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG--  226 (301)
Q Consensus       160 -p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G--  226 (301)
                       +.+|..|.|.|....  ..|.  .+++..|+.|.|          .|.+.+.+.+.+.++|.||||+++|++|...|  
T Consensus       162 ~~~~C~~C~G~G~~~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G  237 (365)
T PRK14285        162 SPSICNMCNGSGRVMQ--GGGF--FRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG  237 (365)
T ss_pred             CCccCCCccCceeEEe--cCce--eEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence             567888888886442  3333  367899999988          68999999999999999999999999996544  


Q ss_pred             -----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 -----WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 -----~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                           ++.+||+|+..+...+..++++..||+.
T Consensus       238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~  270 (365)
T PRK14285        238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYA  270 (365)
T ss_pred             ccCCCCCCCCCEEEEEEEecCCCeEEeccceEE
Confidence                 2457999998866665566667767765

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.7e-31  Score=256.31  Aligned_cols=204  Identities=24%  Similarity=0.261  Sum_probs=147.9

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--cccc
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFGT  122 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~~  122 (301)
                      ...|||+||||+++|+.+|||+|||+||++||||+++.+  +.+.|++|++||+||+||.+|..||+++.....  +++.
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~   81 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG   81 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence            357999999999999999999999999999999999753  567999999999999999999999998753211  1100


Q ss_pred             --c--------------CCC-Cccc--ccCCCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195          123 --N--------------ASA-GFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------S  160 (301)
Q Consensus       123 --~--------------~f~-g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p  160 (301)
                        +              +|+ +.+.  .....+.++.++.+.                 ..+-+.|..|.+.+      +
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  161 (366)
T PRK14294         82 FSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP  161 (366)
T ss_pred             cCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence              0              111 0000  000122344455432                 22344566665543      4


Q ss_pred             ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195          161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----  226 (301)
Q Consensus       161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G----  226 (301)
                      .+|..|.|.|...  .+.|.+  +++.+|+.|.|          .|.|.+++.+.+.|+|.||+|+++|++|...|    
T Consensus       162 ~~C~~C~G~G~~~--~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  237 (366)
T PRK14294        162 TTCPQCGGSGQVT--QSQGFF--SIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA  237 (366)
T ss_pred             ccCCCcCCeEEEE--EEeeeE--EEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccC
Confidence            5788888888654  344433  47899999988          68999999999999999999999999997554    


Q ss_pred             ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                         ++.++|+++..+...+..++++..||+-
T Consensus       238 ~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~  268 (366)
T PRK14294        238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHC  268 (366)
T ss_pred             CCCCCCCCcEEEEEEEccCCcceecCCCEEE
Confidence               2457899998876666666777777775

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.5e-31  Score=258.60  Aligned_cols=202  Identities=20%  Similarity=0.249  Sum_probs=145.6

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccc---------
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR---------  117 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~---------  117 (301)
                      .|||+||||+++||.+|||+|||+||++||||+++++  ++++|++|++||++|+||.+|+.||+++....         
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            4899999999999999999999999999999999853  56799999999999999999999999874311         


Q ss_pred             ccccc------------------------cCCCCcc--cccC---CCCCCCCccccc-----------------cccccc
Q 022195          118 FHFGT------------------------NASAGFS--RSSW---KGPPRPEALFVD-----------------ENACIG  151 (301)
Q Consensus       118 ~~~~~------------------------~~f~g~g--~~~~---~gp~r~~difvd-----------------e~~Cig  151 (301)
                      .+++.                        .+|++.+  ++..   ..+.++.++.+.                 ...-+.
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~  160 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS  160 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence            01100                        0011100  0000   112234444432                 123445


Q ss_pred             CCCCCcc------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCC
Q 022195          152 CRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQ  215 (301)
Q Consensus       152 C~~C~g~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G  215 (301)
                      |..|.++      .+.+|..|.|.|....  +.|.  .+++.+|+.|.|          .|.+.+.+.+.+.|+|.||||
T Consensus       161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  236 (391)
T PRK14284        161 CDACSGSGANSSQGIKVCDRCKGSGQVVQ--SRGF--FSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG  236 (391)
T ss_pred             CCCCcccccCCCCCCeecCccCCeeEEEE--Eece--EEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence            6666544      3568999998886553  3354  347789999988          689999999999999999999


Q ss_pred             CCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          216 PKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       216 ~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +++|++|...|       ++.||||++..+...+..++|+.+||+-
T Consensus       237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  282 (391)
T PRK14284        237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLIL  282 (391)
T ss_pred             CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEE
Confidence            99999996554       3567899999876666666666767665

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.97  E-value=2.9e-31  Score=253.73  Aligned_cols=205  Identities=26%  Similarity=0.302  Sum_probs=153.3

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc--------cc
Q 022195           50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------HF  120 (301)
Q Consensus        50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--------~~  120 (301)
                      |||+||||+++|+.+|||+|||+|+++||||+++.. +.++|++|++||++|+||.+|..||.++.....        ++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            799999999999999999999999999999999743 567999999999999999999999997743211        01


Q ss_pred             cc--------------cCCCCc-cccc--CCCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195          121 GT--------------NASAGF-SRSS--WKGPPRPEALFVD-----------------ENACIGCRECVHHA------S  160 (301)
Q Consensus       121 ~~--------------~~f~g~-g~~~--~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p  160 (301)
                      ..              .+|++. +...  ...+.++.++.+.                 ..+-+.|..|.+.+      +
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  160 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP  160 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence            00              011110 0000  0122344555433                 22345666676654      5


Q ss_pred             ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195          161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----  226 (301)
Q Consensus       161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G----  226 (301)
                      .+|..|.|.|.....++++++..+.+..|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...|    
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  240 (354)
T TIGR02349       161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA  240 (354)
T ss_pred             ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence            6899999999988888888866666889999988          68999999999999999999999999996554    


Q ss_pred             ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                         ++.++||++..+...+..++++.+|++-
T Consensus       241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~  271 (354)
T TIGR02349       241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYI  271 (354)
T ss_pred             CCCCCCCCCEEEEEEEecCcceEEecCCEEE
Confidence               2346899999866665566666667765

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=3.2e-31  Score=255.40  Aligned_cols=208  Identities=24%  Similarity=0.330  Sum_probs=153.9

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHhhhhcccccccccccccccccccc----
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG----  121 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~~~----  121 (301)
                      ...|||+||||+++||.+|||+|||+||++||||+|++ .+.++|++|++||++|+||.+|..||+++.....+++    
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~   82 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI   82 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence            36799999999999999999999999999999999975 3567999999999999999999999997743211110    


Q ss_pred             ----------ccCCCCcc--cccC-------CCCCCCCcccccc-----------------cccccCCCCCcc------c
Q 022195          122 ----------TNASAGFS--RSSW-------KGPPRPEALFVDE-----------------NACIGCRECVHH------A  159 (301)
Q Consensus       122 ----------~~~f~g~g--~~~~-------~gp~r~~difvde-----------------~~CigC~~C~g~------a  159 (301)
                                .+++++++  ++.+       .++.++.++.++.                 ..-+.|..|.+.      .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  162 (378)
T PRK14283         83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSE  162 (378)
T ss_pred             ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCC
Confidence                      00000000  1111       1233455555431                 123445555543      4


Q ss_pred             cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC---
Q 022195          160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---  226 (301)
Q Consensus       160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G---  226 (301)
                      +..|..|.|.|.....++.++...+.+.+|+.|.|          .|.+.+.+.+.+.++|.||+|+++|++|...|   
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~  242 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGE  242 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEecccc
Confidence            56899999999988888887755556789999988          68999999999999999999999999996554   


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                          ...+||++|..+......++++.+|++-
T Consensus       243 ~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~  274 (378)
T PRK14283        243 MGDRGGEPGDLYVVIKVKPHKIFRREGANLYY  274 (378)
T ss_pred             CCCCCCCCccEEEEEEEEcCCCEEEecCCEEE
Confidence                2456899999977666666667767665

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=2.6e-31  Score=254.92  Aligned_cols=206  Identities=21%  Similarity=0.251  Sum_probs=153.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc----ccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----HFG  121 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~----~~~  121 (301)
                      .|||+||||+++||.+|||+|||+|+++||||+++.+   +.+.|++|++||++|+||.+|..||.++.....    +++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~   82 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN   82 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence            6999999999999999999999999999999999753   557999999999999999999999998753210    111


Q ss_pred             c--------------cCCCCc-cc---ccC-CCC---CCCCccccc-----------------ccccccCCCCCccc---
Q 022195          122 T--------------NASAGF-SR---SSW-KGP---PRPEALFVD-----------------ENACIGCRECVHHA---  159 (301)
Q Consensus       122 ~--------------~~f~g~-g~---~~~-~gp---~r~~difvd-----------------e~~CigC~~C~g~a---  159 (301)
                      .              .+|++. +.   +.+ ..+   .++.++...                 ..+.+.|..|.+.+   
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~  162 (365)
T PRK14290         83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN  162 (365)
T ss_pred             ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence            0              011110 00   000 001   113444432                 22344555565543   


Q ss_pred             --cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-
Q 022195          160 --SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-  226 (301)
Q Consensus       160 --p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-  226 (301)
                        +.+|..|.|.|.....++.|.+.++++.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...| 
T Consensus       163 ~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~  242 (365)
T PRK14290        163 GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGK  242 (365)
T ss_pred             CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccc
Confidence              46899999999887777777766777889999987          68999999999999999999999999997555 


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                          ++.|+||++..++..+..++|+..|++-
T Consensus       243 G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~  274 (365)
T PRK14290        243 GQSYGGRTGDLYVVLRVNNDPNIQRINDDLYV  274 (365)
T ss_pred             cCCCCCCCCCEEEEEEEcCCCCEEEecCCEEE
Confidence                3468999999977776666777766665

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=4e-31  Score=254.20  Aligned_cols=203  Identities=23%  Similarity=0.276  Sum_probs=147.9

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~  119 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+++.+  ++++|++|++||+||+||.+|..||+++.....      +
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g   82 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG   82 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence            47999999999999999999999999999999999753  557999999999999999999999998753211      1


Q ss_pred             ccc-------------cCCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCccc------cc
Q 022195          120 FGT-------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SN  161 (301)
Q Consensus       120 ~~~-------------~~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~  161 (301)
                      |..             .+|++.+.  ..-..+.++.|+.+.                 ..+-+.|..|.+.+      +.
T Consensus        83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~  162 (373)
T PRK14301         83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE  162 (373)
T ss_pred             cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence            100             00110000  000123345555533                 22345566666543      56


Q ss_pred             eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-----
Q 022195          162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-----  226 (301)
Q Consensus       162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-----  226 (301)
                      +|..|.|.|....  +.|.  .+++..|+.|.|          .|.|.+++.+.+.|+|.||+|+++|++|...|     
T Consensus       163 ~C~~C~G~G~v~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~  238 (373)
T PRK14301        163 TCRHCGGSGQVRQ--SQGF--FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG  238 (373)
T ss_pred             ccCCccCeeEEEE--Eeee--EEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence            7999998886543  3343  356899999987          68999999999999999999999999996444     


Q ss_pred             --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 --WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 --~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                        ++.+||++|..+...+...+++.+||+-
T Consensus       239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~  268 (373)
T PRK14301        239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVV  268 (373)
T ss_pred             CCCCCCcCEEEEEEEEECCCceeecCcEEE
Confidence              2456899999877666666677777765

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=3.8e-31  Score=254.39  Aligned_cols=203  Identities=24%  Similarity=0.310  Sum_probs=146.9

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~  119 (301)
                      ..|||+||||+++||.+|||+|||+||++||||+++..  +.++|++|++||++|+||.+|..||.++.....      +
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~   82 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG   82 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence            57999999999999999999999999999999999743  567999999999999999999999998743211      1


Q ss_pred             ccc--c-----------CCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc------ccee
Q 022195          120 FGT--N-----------ASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTF  163 (301)
Q Consensus       120 ~~~--~-----------~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf  163 (301)
                      ++.  +           +|++.+......+.++.|+.+.                 ..+.+.|..|.+.+      +..|
T Consensus        83 ~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C  162 (371)
T PRK10767         83 FGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTC  162 (371)
T ss_pred             CCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccC
Confidence            110  0           0110000000123345555432                 22455666676653      4579


Q ss_pred             eeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------
Q 022195          164 VMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------  226 (301)
Q Consensus       164 ~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------  226 (301)
                      ..|.|.|.....+  |..  +++.+|+.|.|          .|.+.+++.+.+.|+|.||+|+++|++|...|       
T Consensus       163 ~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~  238 (371)
T PRK10767        163 PTCHGAGQVRMQQ--GFF--TVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGER  238 (371)
T ss_pred             CCCCCeeEEEEee--ceE--EEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCC
Confidence            9999888655433  433  47789999988          68999999999999999999999999996554       


Q ss_pred             CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ++.+||||+..+...+..++++.+|++.
T Consensus       239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~  266 (371)
T PRK10767        239 GGPAGDLYVQIHVKEHPIFERDGNDLYC  266 (371)
T ss_pred             CCCCcCEEEEEEEeeCCCEEEecCCEEE
Confidence            2457899998866665566666767664

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=5.9e-31  Score=254.91  Aligned_cols=206  Identities=24%  Similarity=0.290  Sum_probs=151.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--------
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------  118 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--------  118 (301)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+  +.+.|++|++||++|+||.+|..||.++.....        
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~   82 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG   82 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence            6999999999999999999999999999999999753  567999999999999999999999998743211        


Q ss_pred             -cccc-------------cCCCCcc-c--------------ccCC----CCCCCCccccc-----------------ccc
Q 022195          119 -HFGT-------------NASAGFS-R--------------SSWK----GPPRPEALFVD-----------------ENA  148 (301)
Q Consensus       119 -~~~~-------------~~f~g~g-~--------------~~~~----gp~r~~difvd-----------------e~~  148 (301)
                       +++.             .+|++.+ +              ....    .+.++.|+.+.                 ..+
T Consensus        83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r  162 (397)
T PRK14281         83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK  162 (397)
T ss_pred             CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence             0100             1122100 0              0000    11234455433                 112


Q ss_pred             cccCCCCCcc-----ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeC
Q 022195          149 CIGCRECVHH-----ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQ  213 (301)
Q Consensus       149 CigC~~C~g~-----ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip  213 (301)
                      -+.|..|.+.     .+.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.|.+++.+.+.|+|.||
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  242 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVP  242 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecC
Confidence            3345555443     356899999999887777777666666889999988          6899999999999999999


Q ss_pred             CCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          214 PQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       214 ~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +|+++|++|...|       ++.+||+++..+...+..++|+.+||+-
T Consensus       243 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~  290 (397)
T PRK14281        243 AGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY  290 (397)
T ss_pred             CCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEE
Confidence            9999999996554       2467899999877666666677777765

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1e-30  Score=252.52  Aligned_cols=204  Identities=21%  Similarity=0.275  Sum_probs=146.8

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccc----ccccccc--
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDA----SIGQMRF--  118 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~----~~~~~~~--  118 (301)
                      ...|||+||||+++||.+|||+|||+||++||||+++.+  ++++|++|++||+||+||.+|..||+    ++.....  
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            357999999999999999999999999999999999743  56799999999999999999999998    5432110  


Q ss_pred             -------cccc---cCCC---------Cc------ccccC-------CCCCCCCccccc-----------------cccc
Q 022195          119 -------HFGT---NASA---------GF------SRSSW-------KGPPRPEALFVD-----------------ENAC  149 (301)
Q Consensus       119 -------~~~~---~~f~---------g~------g~~~~-------~gp~r~~difvd-----------------e~~C  149 (301)
                             +|+.   ..|+         ++      .|+.+       ..+.++.|+.+.                 ..+-
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~  166 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ  166 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence                   0100   0000         00      01111       112334455432                 1234


Q ss_pred             ccCCCCCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeC
Q 022195          150 IGCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQ  213 (301)
Q Consensus       150 igC~~C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip  213 (301)
                      +.|..|.+.+      +.+|..|.|.|......  +.+  +++.+|+.|.|          .|.+.+++.+.+.|+|.||
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip  242 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGF--SLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP  242 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cce--EEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence            4566666543      56899999888665443  433  46789999988          6889999999999999999


Q ss_pred             CCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          214 PQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       214 ~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +|+++|++|...|       ++.++||+|..+...+..++|+.+||+-
T Consensus       243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  290 (389)
T PRK14295        243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTV  290 (389)
T ss_pred             CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEE
Confidence            9999999997554       2456899999877666667777777765

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=3.4e-30  Score=248.95  Aligned_cols=207  Identities=23%  Similarity=0.198  Sum_probs=151.8

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H  119 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~  119 (301)
                      ..|||+||||+++|+.+|||+|||+||++||||+++.+  +.++|++|++||++|+||.+|..||+++.....      +
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG   83 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence            57999999999999999999999999999999999753  567999999999999999999999997643211      1


Q ss_pred             ccc-c---------C---CCCc--cc------c---cCCCCCCCCccccc-----------------ccccccCCCCCcc
Q 022195          120 FGT-N---------A---SAGF--SR------S---SWKGPPRPEALFVD-----------------ENACIGCRECVHH  158 (301)
Q Consensus       120 ~~~-~---------~---f~g~--g~------~---~~~gp~r~~difvd-----------------e~~CigC~~C~g~  158 (301)
                      ++. .         +   |++.  +.      .   ....+.++.++.+.                 ..+-+.|..|.+.
T Consensus        84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~  163 (386)
T PRK14289         84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT  163 (386)
T ss_pred             CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCC
Confidence            110 0         0   1110  00      0   00112233444332                 1234556666554


Q ss_pred             c------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEE
Q 022195          159 A------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGV  222 (301)
Q Consensus       159 a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I  222 (301)
                      +      +.+|..|+|.|.....++.++...+++..|+.|.|          .|.+.+.+.+.+.++|.||+|+++|++|
T Consensus       164 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  243 (386)
T PRK14289        164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQL  243 (386)
T ss_pred             CCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEE
Confidence            3      46899999999988888887766667899999987          6999999999999999999999999999


Q ss_pred             ecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          223 FGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       223 ~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      .+.|       +..+||++|..+.......+++..|++.
T Consensus       244 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~  282 (386)
T PRK14289        244 SMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIY  282 (386)
T ss_pred             EEeccccCCCCCCCCccEEEEEEEecCCcccccccceeE
Confidence            7554       2357899999866554444556666665

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=9e-30  Score=244.84  Aligned_cols=206  Identities=24%  Similarity=0.314  Sum_probs=150.6

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc------ccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------HFG  121 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~~~  121 (301)
                      .|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++.....      .|+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            5899999999999999999999999999999999754 567999999999999999999999998753210      011


Q ss_pred             c----------cCCCCccc--ccC-CCCCCCCccccc-----------------ccccccCCCCCccc-------cceee
Q 022195          122 T----------NASAGFSR--SSW-KGPPRPEALFVD-----------------ENACIGCRECVHHA-------SNTFV  164 (301)
Q Consensus       122 ~----------~~f~g~g~--~~~-~gp~r~~difvd-----------------e~~CigC~~C~g~a-------p~tf~  164 (301)
                      .          .+|++.++  ..+ .++.++.++...                 ....+.|..|.+++       +.+|.
T Consensus        82 ~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~  161 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCP  161 (371)
T ss_pred             ccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCC
Confidence            0          11221110  001 123344444432                 22455677776543       56899


Q ss_pred             eeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCCC-----C
Q 022195          165 MDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWE-----R  229 (301)
Q Consensus       165 ~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~-----~  229 (301)
                      .|.|.|......+..+...+++..|..|.|          .|.+.+.+.+.+.++|.||+|+.+|++|...|.+     .
T Consensus       162 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~  241 (371)
T PRK14292        162 TCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG  241 (371)
T ss_pred             CCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC
Confidence            999999887777666555566889999987          6899999999999999999999999999755521     2


Q ss_pred             CCceehhhHHHHHHHHHHhhCCCCC
Q 022195          230 PANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       230 ~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      .+|+||..+...+...+++.+|++.
T Consensus       242 ~GDL~v~i~v~~h~~f~r~g~dL~~  266 (371)
T PRK14292        242 NGDLYVHIEMEPHPELRREQEHLIY  266 (371)
T ss_pred             CCCEEEEEEEecCCccccchhceeE
Confidence            3899998855554445566666765

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=9.2e-30  Score=244.96  Aligned_cols=207  Identities=23%  Similarity=0.298  Sum_probs=151.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc---ccc--
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---HFG--  121 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~~~--  121 (301)
                      ..|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++.....   +++  
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            36999999999999999999999999999999999754 567999999999999999999999997743211   110  


Q ss_pred             ----------ccCCCCccc-c------cCCCCCCCCccccc-----------------ccccccCCCCCcc------ccc
Q 022195          122 ----------TNASAGFSR-S------SWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASN  161 (301)
Q Consensus       122 ----------~~~f~g~g~-~------~~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~  161 (301)
                                ..+|++++. .      ...++.++.++.+.                 ....+.|..|.+.      .+.
T Consensus        82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~  161 (374)
T PRK14293         82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT  161 (374)
T ss_pred             ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence                      011211000 0      00122334444432                 1234556666553      246


Q ss_pred             eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCC----
Q 022195          162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW----  227 (301)
Q Consensus       162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~----  227 (301)
                      +|..|.|.|.....++.++...+.+..|+.|.|          .|.+.+++.+.+.++|.||||+++|++|.+.|.    
T Consensus       162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~  241 (374)
T PRK14293        162 TCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAG  241 (374)
T ss_pred             eCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCC
Confidence            899999999888888888766666789999987          688899999999999999999999999975552    


Q ss_pred             ---CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          228 ---ERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       228 ---~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                         ..+||++|..+.......++++.|++-
T Consensus       242 ~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~  271 (374)
T PRK14293        242 LRGGPPGDLYVYLFVKNDPEFRRDGINILS  271 (374)
T ss_pred             CCCCCCcCEEEEEEEeCCCccChhhhceEE
Confidence               346899998866555455556656654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=6.6e-30  Score=245.78  Aligned_cols=202  Identities=22%  Similarity=0.295  Sum_probs=145.5

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccccccccc------cc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH------FG  121 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~------~~  121 (301)
                      .|||+||||+++||.+|||+|||+|+++||||+++.. +.++|++|++||++|+||.+|..||+++.....+      .+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g   82 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG   82 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence            6999999999999999999999999999999999753 4579999999999999999999999986432110      00


Q ss_pred             c-cC------------CCCc-cc-c--cC-CCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195          122 T-NA------------SAGF-SR-S--SW-KGPPRPEALFVD-----------------ENACIGCRECVHHA------S  160 (301)
Q Consensus       122 ~-~~------------f~g~-g~-~--~~-~gp~r~~difvd-----------------e~~CigC~~C~g~a------p  160 (301)
                      . +.            |+++ +. +  .+ ..+.++.++.+.                 ..+-+.|..|.+.+      +
T Consensus        83 ~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~  162 (372)
T PRK14300         83 NHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETV  162 (372)
T ss_pred             CCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCC
Confidence            0 00            1000 00 0  00 011244455433                 22345666676643      5


Q ss_pred             ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195          161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----  226 (301)
Q Consensus       161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G----  226 (301)
                      .+|..|.|.|..+.  +.|.+  +++.+|+.|.|          .|.+.+++.+.+.++|.||+|+++|++|...|    
T Consensus       163 ~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~  238 (372)
T PRK14300        163 TTCDACSGVGATRM--QQGFF--TIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA  238 (372)
T ss_pred             ccCCCccCeEEEEE--eeceE--EEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence            67899998886553  33432  47789999987          68999999999999999999999999997554    


Q ss_pred             ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                         ++.++||++..+...+..++++..|++-
T Consensus       239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~  269 (372)
T PRK14300        239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHC  269 (372)
T ss_pred             CCCCCCCCCEEEEEEECCCCCeEEecCCEEE
Confidence               2357899998866555556666666665

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-26  Score=213.94  Aligned_cols=206  Identities=23%  Similarity=0.215  Sum_probs=128.6

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccccccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG  121 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~~~  121 (301)
                      .....+|||+||||+++|+..|||+||||||++||||+||++  +++.|+.|+.||+|||||++|+.||.+|.......+
T Consensus        11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~   90 (336)
T KOG0713|consen   11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN   90 (336)
T ss_pred             hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence            345679999999999999999999999999999999999975  678999999999999999999999999854433111


Q ss_pred             c-------------cCCCCccc---ccC--CCCCCCCcccccccccccCCCCCccc------ccee-----eeeCCcceE
Q 022195          122 T-------------NASAGFSR---SSW--KGPPRPEALFVDENACIGCRECVHHA------SNTF-----VMDEATGCA  172 (301)
Q Consensus       122 ~-------------~~f~g~g~---~~~--~gp~r~~difvde~~CigC~~C~g~a------p~tf-----~~c~g~G~~  172 (301)
                      .             .+|+..|+   ...  .....+.++.++.+.|..|-.-....      +..+     ..|.+ -..
T Consensus        91 ~~~~~g~~~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~-~~~  169 (336)
T KOG0713|consen   91 KDGEGGGGGNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNC-RLE  169 (336)
T ss_pred             cccccCCcccchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCC-hhh
Confidence            0             11221111   000  11222333333333332221111110      0000     11111 122


Q ss_pred             EEEEeeCC-ccccc-cccccCCCcceeeceeeccccEEEEEeCCCCCCCcEE--ecCC----CCCCCceehhhHHHHHHH
Q 022195          173 RVKVQYGD-SDQNI-EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGV--FGGG----WERPANVFMAAKAFNKQL  244 (301)
Q Consensus       173 ~v~~q~g~-~~~~i-q~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I--~g~G----~~~~~~vfv~~~~~~~~~  244 (301)
                      .+.++.++ ..+.+ +..|+.||+    .+...+...+++.+..|+.+|..+  .+.|    .+.|+|+++-..+...-+
T Consensus       170 ~~~~~~~~g~~~~~q~~~~~~~~~----~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~  245 (336)
T KOG0713|consen  170 MFTQQEGPGRFQMLQEAVCDECPN----VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPR  245 (336)
T ss_pred             heeeccCCChhhhhhhhhhccCCc----cceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccc
Confidence            33344443 22333 456999998    445667778999999999999987  3444    477888888775544444


Q ss_pred             HHHhhCCCCC
Q 022195          245 QQQAAGGSNP  254 (301)
Q Consensus       245 ~~~~~~~~~~  254 (301)
                      +.++..|++.
T Consensus       246 ~~~k~~~~~~  255 (336)
T KOG0713|consen  246 FERKGDDLYT  255 (336)
T ss_pred             eecCccchhh
Confidence            4444444544

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8e-26  Score=210.07  Aligned_cols=215  Identities=19%  Similarity=0.199  Sum_probs=147.8

Q ss_pred             eeccCCCCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccc
Q 022195           35 RCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      .+...+..+......|||+||||+++|+..|||+||++|+|+||||.|.++ +.++|++|.+|||+|+|+++|..||..+
T Consensus        29 ~~~r~~~~s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~  108 (288)
T KOG0715|consen   29 LNTRKFHASRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYG  108 (288)
T ss_pred             cccceeeecccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            344444445555566999999999999999999999999999999999875 5679999999999999999999999987


Q ss_pred             cccccccc-------ccCCCC-cc--cc------cCCCCC----CCCccccc---ccccccCCCC---CccccceeeeeC
Q 022195          114 GQMRFHFG-------TNASAG-FS--RS------SWKGPP----RPEALFVD---ENACIGCREC---VHHASNTFVMDE  167 (301)
Q Consensus       114 ~~~~~~~~-------~~~f~g-~g--~~------~~~gp~----r~~difvd---e~~CigC~~C---~g~ap~tf~~c~  167 (301)
                      .....+++       ...|++ .-  ..      .+...+    ++..--+.   ...|.+|..-   .+.....|..|.
T Consensus       109 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~  188 (288)
T KOG0715|consen  109 LEQHGEFGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS  188 (288)
T ss_pred             hhccccccCCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence            65311111       011222 00  00      010000    00000011   1233333322   234556899999


Q ss_pred             CcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCCCCCCceehhh
Q 022195          168 ATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAA  237 (301)
Q Consensus       168 g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~~~~~vfv~~  237 (301)
                      +.|......+..+...    +|..|.+          .|++.+.+...+.+.+.+|+|..++.+|...|.+.. +|||..
T Consensus       189 ~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-~l~v~~  263 (288)
T KOG0715|consen  189 GRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-DLFVRL  263 (288)
T ss_pred             CcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-eEEEEE
Confidence            9986655444443322    7888866          588888889999999999999999999987765433 999999


Q ss_pred             HHHHHHHHHHhhCCCCC
Q 022195          238 KAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       238 ~~~~~~~~~~~~~~~~~  254 (301)
                      .+-+.+.++++..+.+-
T Consensus       264 ~v~~~~~~~r~~~~i~~  280 (288)
T KOG0715|consen  264 IVAKSPSFRREGKDILY  280 (288)
T ss_pred             EeccCcccccccCcccc
Confidence            88887777776655544

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.8e-23  Score=195.01  Aligned_cols=193  Identities=22%  Similarity=0.266  Sum_probs=115.0

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cccccCC
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGTNAS  125 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~~~~~f  125 (301)
                      ..|||+||||+++||.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++..... ++.....
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~   82 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP   82 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence            57999999999999999999999999999999999753 567999999999999999999999998754211 1110000


Q ss_pred             CCcccccCCCC--CCCCcccccccccccCCCCCccccceeeeeCCcceEEEEEeeC-C----ccccccccccCCCcceee
Q 022195          126 AGFSRSSWKGP--PRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG-D----SDQNIEVSVDSCPVNCIH  198 (301)
Q Consensus       126 ~g~g~~~~~gp--~r~~difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g-~----~~~~iq~aC~~Cpg~Cig  198 (301)
                      ++.+...|.+.  ....++|-..+  -+.+.-.+. ...+.. ...+     .+.| +    ....+.+++..|..    
T Consensus        83 ~~~~~~~~~~~~~~~~~d~f~~~f--gg~~~~~~~-g~~~~~-~~~~-----~~~g~dl~~~l~isL~ea~~G~~~----  149 (291)
T PRK14299         83 GPPGGGDFSGFNVGDFSDFFQQLF--GGRGGFGGF-GDLFGS-VGRR-----ARKGRDLEAELPLTLEEAYRGGEK----  149 (291)
T ss_pred             CCCCCCCccccCcCCHHHHHHHHh--CCCCCCCCc-cccccc-ccCC-----CCCCCCEEEEEEecHHHHhCCCeE----
Confidence            00010111110  01123332211  011100000 000000 0000     0111 1    11123344444443    


Q ss_pred             ceeeccccEEEEEeCCCCCCCcEEecCCCCC-CCceehhhHHHHHHHHHHhhCCCCC
Q 022195          199 WVDREELPVLEFLIQPQPKKGYGVFGGGWER-PANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       199 ~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~~-~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      .... ..+.++|.||+|+++|++|...|.+. .||++|......+..++++.+|++-
T Consensus       150 ~i~l-~g~~~~V~Ip~G~~~G~~ir~~g~G~~~GDL~v~i~v~~h~~f~R~G~DL~~  205 (291)
T PRK14299        150 VVEV-AGERLSVRIPPGVREGQVIRLAGKGRQGGDLYLVVRLLPHPVFRLEGDDLYA  205 (291)
T ss_pred             EEee-CCEEEEEecCCCcCCCcEEEECCCCCCCCCEEEEEEEcCCCCeEEECCEEEE
Confidence            2222 23579999999999999998666432 3899999876666667777777765

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.87  E-value=1.1e-22  Score=191.01  Aligned_cols=67  Identities=34%  Similarity=0.605  Sum_probs=62.0

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ..|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            36999999999999999999999999999999998754 56799999999999999999999999764

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.4e-19  Score=158.17  Aligned_cols=74  Identities=34%  Similarity=0.497  Sum_probs=67.7

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      +.+....|+|+||||+++|+.++||++||+|+++||||++++.  +.++|++||+||+||+||.+|..||.++...
T Consensus        25 ~~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~  100 (279)
T KOG0716|consen   25 SEDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG  100 (279)
T ss_pred             ccccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence            4445588999999999999999999999999999999999984  7889999999999999999999999997654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.69  E-value=1.4e-17  Score=120.77  Aligned_cols=61  Identities=44%  Similarity=0.769  Sum_probs=57.0

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccc
Q 022195           50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD  110 (301)
Q Consensus        50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD  110 (301)
                      |||+||||+++++.++||++|+++++++|||+++..   +.+.|..|++||++|+||.+|..||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            689999999999999999999999999999998664   3568999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.4e-17  Score=159.37  Aligned_cols=74  Identities=39%  Similarity=0.596  Sum_probs=66.6

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF  118 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~  118 (301)
                      +...+.||+||||..+|+..|||++||+|||+||||+||+.   +.+.|+.|+.||+|||||..|..||.+..+...
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            34567899999999999999999999999999999999874   456999999999999999999999998876543

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.1e-17  Score=151.31  Aligned_cols=69  Identities=41%  Similarity=0.596  Sum_probs=64.8

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ..|||+||||+++|+..||++|||.++++||||+||++  +++.|+.|.+||+||+|+.+|..||..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            68999999999999999999999999999999999875  6789999999999999999999999988643

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.63  E-value=2.3e-16  Score=162.62  Aligned_cols=74  Identities=31%  Similarity=0.405  Sum_probs=66.3

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ......++||+||||+++||..+||+|||+||++||||+++.+ +.++|+.|++||+||+||.+|..||.+|...
T Consensus       567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            3344578999999999999999999999999999999999764 5569999999999999999999999987643

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=1.9e-16  Score=151.76  Aligned_cols=72  Identities=32%  Similarity=0.457  Sum_probs=64.8

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ...+.+||.+|+|+++||.+|||+|||++++.||||+.-++     +++.|+.|.+|||||+||.+|.+||.+|.++
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            44567999999999999999999999999999999998643     4569999999999999999999999998654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3.4e-16  Score=138.46  Aligned_cols=70  Identities=36%  Similarity=0.560  Sum_probs=63.0

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ..+|+|+||||..+|+..+|++||++|++++|||+++++    +.+.|+.|+.||.||+|.++|+.||..+.-.
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            345999999999999999999999999999999999743    4569999999999999999999999987543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.60  E-value=1.2e-15  Score=108.93  Aligned_cols=57  Identities=47%  Similarity=0.707  Sum_probs=51.9

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHhhhhcccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDL  105 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~f~~i~~AY~vL~d~~~  105 (301)
                      .|||+||||+++++.++||++|+++++++|||+++.   .+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            479999999999999999999999999999999984   256799999999999999853

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.58  E-value=2.1e-15  Score=105.72  Aligned_cols=53  Identities=49%  Similarity=0.806  Sum_probs=49.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhc
Q 022195           50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d  102 (301)
                      |||+||||+++++.++||++|++|++++|||+++.  .+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999985  356799999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.58  E-value=6.8e-16  Score=130.56  Aligned_cols=66  Identities=26%  Similarity=0.300  Sum_probs=60.8

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        49 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ..+|+||||+++|  |..+||+|||++++++|||++++  .+.|++|++||++|+|+.+|..||..+...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~--~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD--EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch--hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4589999999999  99999999999999999999764  479999999999999999999999987654

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.3e-15  Score=132.00  Aligned_cols=75  Identities=32%  Similarity=0.490  Sum_probs=67.3

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR  117 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~  117 (301)
                      .......|+||||||++++|.+|||+|||+|++++||||++.+  .++.|..|++||+.|+|+..|..|..++...+
T Consensus        93 ~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   93 RRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            3566789999999999999999999999999999999999763  45688999999999999999999999987654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1e-14  Score=127.75  Aligned_cols=68  Identities=44%  Similarity=0.637  Sum_probs=62.6

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhcccccccccccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      ....+||+||||+++|+..|||++||++++++|||+++..   +.+.|+.|++||++|+|+.+|..||..+
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            3467899999999999999999999999999999999865   4589999999999999999999999863

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.48  E-value=3.8e-14  Score=132.40  Aligned_cols=71  Identities=35%  Similarity=0.582  Sum_probs=64.0

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhcccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      .+..+|||+||||.++|+..||.+|||++|.+||||...++     ++++|..|..|-|||+||++|+.||..-.+
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP  465 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP  465 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence            35678999999999999999999999999999999998653     566899999999999999999999997643

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.47  E-value=2.7e-14  Score=144.60  Aligned_cols=66  Identities=42%  Similarity=0.624  Sum_probs=61.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      .|||+||||+++|+..+||++||+|++++|||+++.. +..+|+.|++||++|+||.+|..||.++.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            5899999999999999999999999999999998763 45689999999999999999999999764

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.42  E-value=1.4e-13  Score=119.08  Aligned_cols=65  Identities=26%  Similarity=0.528  Sum_probs=57.1

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhcccccccccccc
Q 022195           49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      .|||+||||++.  ++..+|+++||++++++|||+....       +.+.|..||+||++|+||.+|..|+-.+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l   74 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL   74 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence            489999999997  6889999999999999999997543       2347889999999999999999998754

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.39  E-value=2.1e-13  Score=117.38  Aligned_cols=65  Identities=32%  Similarity=0.469  Sum_probs=57.1

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcch-----HHHHHHHHHHhhhhcccccccccccc
Q 022195           49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGH-----EHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-----~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      .|||++|||++.  ++..+|+++|++|++++|||++.....     ..+..||+||++|+||.+|..|+-.+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            589999999997  789999999999999999999865321     24679999999999999999998765

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=7.5e-13  Score=114.62  Aligned_cols=69  Identities=23%  Similarity=0.355  Sum_probs=60.2

Q ss_pred             CCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhccccccccccccc
Q 022195           46 SKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      +...|||++|||++.  .+..+|+++||+|++++|||++...       +.+.+..||+||++|+||.+|..|+-.+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            356899999999999  5689999999999999999998643       23478999999999999999999998654

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.35  E-value=1e-12  Score=114.21  Aligned_cols=67  Identities=27%  Similarity=0.420  Sum_probs=57.5

Q ss_pred             ccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195           48 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        48 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ..|||+||||++.  ++..+|+++|++|++++|||++....       .+.+..||+||++|+||.+|..|+-.+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~   80 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR   80 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence            3799999999996  68999999999999999999986432       2245899999999999999999997543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.34  E-value=1.1e-12  Score=105.77  Aligned_cols=57  Identities=32%  Similarity=0.460  Sum_probs=51.0

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhh
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM  101 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~  101 (301)
                      ...+...++|+||||++++|.+|||++||+|++++|||+++  ..+.|.+|++||++|.
T Consensus        59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--s~~~~~kIneAyevL~  115 (116)
T PTZ00100         59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--STYIASKVNEAKDLLL  115 (116)
T ss_pred             cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHh
Confidence            45566789999999999999999999999999999999964  3578899999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.3e-13  Score=128.18  Aligned_cols=74  Identities=26%  Similarity=0.363  Sum_probs=66.7

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .+..+..|+|.+|||+++++.++||+.||++|...|||||..+ +++.|+.|+.||++|+|+++|..||......
T Consensus       229 ~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  229 SRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             hhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            3445589999999999999999999999999999999999865 5679999999999999999999999987543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.3e-12  Score=117.20  Aligned_cols=71  Identities=32%  Similarity=0.572  Sum_probs=64.0

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      -...|.|+||||..+++..||++|||+|++++|||+++++ +.+.|+.|..||++|.|.+.|..||-.....
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            3456899999999999999999999999999999999764 5569999999999999999999999887544

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.1e-12  Score=118.21  Aligned_cols=67  Identities=40%  Similarity=0.600  Sum_probs=62.0

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ..|||+||+|.++|+..||++||+++++++|||+++..   +.++|++|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            47899999999999999999999999999999998876   34479999999999999999999999986

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.9e-12  Score=121.24  Aligned_cols=72  Identities=35%  Similarity=0.528  Sum_probs=64.7

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHhhhhccccccccccccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      -+.++..|||.||||..+++..|||+|||++++.+|||++..   +++.+|+++.+||.+|+||.+|..||....
T Consensus       367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d  441 (486)
T KOG0550|consen  367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD  441 (486)
T ss_pred             HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence            345668999999999999999999999999999999999854   356699999999999999999999998653

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.20  E-value=1.7e-11  Score=113.20  Aligned_cols=57  Identities=35%  Similarity=0.547  Sum_probs=50.5

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------cchHHHHHHHHHHhhhhc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---------~~~~~f~~i~~AY~vL~d  102 (301)
                      ..-.++|+||||++++|.+|||++||+|+++||||++..         .+.++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999632         145699999999999985

>PHA02624 large T antigen; Provisional

Probab=99.14  E-value=2.8e-11  Score=121.44  Aligned_cols=60  Identities=35%  Similarity=0.507  Sum_probs=55.9

Q ss_pred             ccCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccc
Q 022195           48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY  109 (301)
Q Consensus        48 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~Y  109 (301)
                      ..++|++|||+++|  +..+||+|||++++++|||++++  .+.|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd--eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD--EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc--HHHHHHHHHHHHHHhcHHHhhhc
Confidence            46799999999999  99999999999999999999754  57999999999999999999888

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.03  E-value=1e-10  Score=112.22  Aligned_cols=73  Identities=27%  Similarity=0.408  Sum_probs=64.4

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----chHHHHHHHHHHhhhhcccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---K----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR  117 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~  117 (301)
                      ...-.|+||||||+.+++..+||++||+|+.++||||.++   +    -++.+++|++||+.|+|...|..|-.+|...+
T Consensus        94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407          94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            3456899999999999999999999999999999999876   1    34688999999999999999999999875543

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.01  E-value=3e-10  Score=98.43  Aligned_cols=66  Identities=24%  Similarity=0.378  Sum_probs=57.1

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195           49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      .|||++|||++.  .+..++++.|+.|++++|||+....+       .+....||+||.+|+||.+|..|=-.+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999999  89999999999999999999975432       2356789999999999999999866543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.85  E-value=2.7e-09  Score=91.19  Aligned_cols=54  Identities=30%  Similarity=0.490  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhccccccccccccc
Q 022195           61 ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        61 as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      .+..+|+++|++|++++|||+....       +...+..||+||++|+||.+|..|+-.+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            4678999999999999999986442       33578999999999999999999998764

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=4.4e-09  Score=91.55  Aligned_cols=65  Identities=29%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD  108 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~  108 (301)
                      +..-.-++|+||.|.|+.+.++||+.||+|++..|||+|+++   ++..|..|..||.+|-|+.-|..
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            344577899999999999999999999999999999999986   45689999999999999875543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.8e-08  Score=91.46  Aligned_cols=73  Identities=37%  Similarity=0.446  Sum_probs=62.9

Q ss_pred             CCCCCCCccCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCC---Ccc-hHHHHHHHHHHhhhhcccccccccccc
Q 022195           41 AGERASKKKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAG---QKG-HEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        41 ~~~~~~~~~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~---~~~-~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      ...+.+...|+|.+|||+.-   +++.+|.++.++.+.+||||+..   +.+ ...|+.|+.||++|+|+.+|..||.--
T Consensus        35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            45677788999999999876   89999999999999999999972   222 358999999999999999999999853

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5.6e-07  Score=94.04  Aligned_cols=60  Identities=30%  Similarity=0.426  Sum_probs=51.4

Q ss_pred             CCCCCCccCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195           42 GERASKKKNYYELLGVSVE----ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        42 ~~~~~~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d  102 (301)
                      .+..+...+.|+||.|+-+    -..+.||++|++||.+|||||||+ +.++|..+|+|||.|..
T Consensus      1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-GREMFERVNKAYELLSS 1337 (2235)
T ss_pred             CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHH
Confidence            3566777889999999876    234789999999999999999974 67899999999999984

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.4e-06  Score=77.67  Aligned_cols=57  Identities=30%  Similarity=0.587  Sum_probs=50.5

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHHh-hhhc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYK-VLMR  102 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-~~~f~~i~~AY~-vL~d  102 (301)
                      -.-+.+|.||||..+|+.++++.||.+|++++|||...+++ .+.|++|.+||. ||+.
T Consensus        44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999988764 579999999999 7764

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=4.9e-06  Score=65.63  Aligned_cols=59  Identities=29%  Similarity=0.353  Sum_probs=49.8

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG  103 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~  103 (301)
                      .+.++....-.||||+++++.+.||+|+|++....|||+.+.+  -.-..||||+++|...
T Consensus        50 ~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   50 EPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT  108 (112)
T ss_pred             ccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence            4556666777899999999999999999999999999999876  2335699999999753

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=97.94  E-value=2.8e-06  Score=61.70  Aligned_cols=57  Identities=35%  Similarity=0.763  Sum_probs=46.6

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEe--------eCCccccccccccCCCcceeec
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQ--------YGDSDQNIEVSVDSCPVNCIHW  199 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q--------~g~~~~~iq~aC~~Cpg~Cig~  199 (301)
                      +++|...|+||+.|...+|..|.+++. |.+.++..        .......++.+...||++||.+
T Consensus         1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            467889999999999999999999988 77766643        1225567889999999999864

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=97.88  E-value=9.4e-07  Score=62.97  Aligned_cols=55  Identities=35%  Similarity=0.596  Sum_probs=41.2

Q ss_pred             ccccccccCCCCCccccceeeeeCCcceEEEEEeeCC--ccccccccccCCCcceee
Q 022195          144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD--SDQNIEVSVDSCPVNCIH  198 (301)
Q Consensus       144 vde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~--~~~~iq~aC~~Cpg~Cig  198 (301)
                      ||.+.|++|+.|...+|.+|.+.+..|...+..|..+  ....+..+...||+.+|+
T Consensus         1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~   57 (58)
T PF13370_consen    1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIR   57 (58)
T ss_dssp             E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred             CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence            4678999999999999999999999888888777765  345788999999999986

...

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=97.88  E-value=3.3e-06  Score=61.94  Aligned_cols=58  Identities=29%  Similarity=0.647  Sum_probs=45.6

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEE------EEeeCC-ccccccccccCCCcceeece
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARV------KVQYGD-SDQNIEVSVDSCPVNCIHWV  200 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v------~~q~g~-~~~~iq~aC~~Cpg~Cig~~  200 (301)
                      +++|.++|+||+.|...+|.+|.+.+. |.+++      ..+.++ .+..++.|...||+.||++.
T Consensus         3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~   67 (68)
T COG1141           3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE   67 (68)
T ss_pred             EEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence            467889999999999999999999998 55533      333332 44678899999999999763

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00024  Score=59.92  Aligned_cols=69  Identities=26%  Similarity=0.514  Sum_probs=54.7

Q ss_pred             CCCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195           45 ASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQ-------KGHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      .....+||.++|....  ..+..++.-|.-..++.|||+...       -+.+....||+||.+|.||-+|+.|=..+
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl   81 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL   81 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3456789999976555  567777779999999999998532       24456789999999999999999986654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.0027  Score=55.06  Aligned_cols=52  Identities=38%  Similarity=0.583  Sum_probs=44.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHHHhhh
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVL  100 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~f~~i~~AY~vL  100 (301)
                      .+.|.+||+.+.++..+|+++|+++....|||+....         ..+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999986321         345678888888753

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=95.02  E-value=0.0052  Score=63.81  Aligned_cols=55  Identities=13%  Similarity=0.102  Sum_probs=42.3

Q ss_pred             eeeccccEEEEEeCCCCCCCcEEecCCC-----CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          200 VDREELPVLEFLIQPQPKKGYGVFGGGW-----ERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       200 ~~~~e~k~LeV~Ip~G~~dG~~I~g~G~-----~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ....+.+.|+|.||+|+++|++|+..|.     +.+|||++..+...+.+++|+.+|||-
T Consensus       691 ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~GDLyVvIkVKPHp~FrRdGdDL~~  750 (871)
T TIGR03835       691 STTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHV  750 (871)
T ss_pred             ceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCCCCEEEEEEEcCCCCeEEECCeEEE
Confidence            4556677999999999999999975541     224899999877666677777877776

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.93  E-value=0.01  Score=51.44  Aligned_cols=64  Identities=30%  Similarity=0.497  Sum_probs=49.2

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhcccccccccccc
Q 022195           50 NYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        50 d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      +++.++|.++.+  ..+.++..|+.+++.+|||+....+       ...+..++.||.+|.||-+|..|=...
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal   74 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL   74 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            345556666554  3456899999999999999986532       236778999999999999999986544

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=94.90  E-value=0.03  Score=40.72  Aligned_cols=39  Identities=10%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             cccceeeeeCCcceEEEEEeeCCccccccccccCCCcce
Q 022195          158 HASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNC  196 (301)
Q Consensus       158 ~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~C  196 (301)
                      ..+.+|..|.|.|.....++.+++..+++.+|+.|.|.-
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G   51 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTG   51 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCccee
Confidence            455799999999999999997778899999999999843

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=94.75  E-value=0.065  Score=52.00  Aligned_cols=33  Identities=6%  Similarity=0.001  Sum_probs=25.6

Q ss_pred             cEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK  238 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~  238 (301)
                      ..++|.||+|+++|+.|.+.|.       ...||+||..+
T Consensus       292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~  331 (372)
T PRK14300        292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH  331 (372)
T ss_pred             CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            5799999999999999975552       23478887663

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.66  E-value=0.036  Score=55.14  Aligned_cols=42  Identities=33%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCcc---------hHHHHHHHHHHhhh
Q 022195           59 VEANGQEIKEAYRKLQKKYHPDIAGQKG---------HEHTLLLNEAYKVL  100 (301)
Q Consensus        59 ~~as~~eIk~ayr~l~~~~HPD~~~~~~---------~~~f~~i~~AY~vL  100 (301)
                      .-.+.++||++|||..|..||||....+         ++.|-.|++||...
T Consensus       398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            3368999999999999999999987642         23455556666543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.63  E-value=0.069  Score=52.16  Aligned_cols=33  Identities=9%  Similarity=0.020  Sum_probs=25.4

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  238 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~  238 (301)
                      ..|+|.||+|+.+|+.|.+.|.+       ..||+||...
T Consensus       306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  345 (391)
T PRK14284        306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRIS  345 (391)
T ss_pred             cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEE
Confidence            57899999999999999755522       3478887753

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.54  E-value=0.082  Score=51.16  Aligned_cols=32  Identities=6%  Similarity=0.027  Sum_probs=24.5

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  237 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~  237 (301)
                      ..|+|.||+|+.+|+.|.+.|.+       ..||+||..
T Consensus       293 ~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~  331 (365)
T PRK14285        293 KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILII  331 (365)
T ss_pred             CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEE
Confidence            47899999999999999766532       237777765

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.45  E-value=0.081  Score=51.63  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=25.1

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCC------CCCceehhh
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWE------RPANVFMAA  237 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~------~~~~vfv~~  237 (301)
                      ..|+|.||+|+.+|+.|.+.|.+      ..||+||..
T Consensus       313 ~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~  350 (389)
T PRK14295        313 PPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTV  350 (389)
T ss_pred             CEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEE
Confidence            47899999999999999766643      347887765

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.36  E-value=0.1  Score=50.58  Aligned_cols=34  Identities=12%  Similarity=0.012  Sum_probs=26.0

Q ss_pred             ccEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195          205 LPVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK  238 (301)
Q Consensus       205 ~k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~  238 (301)
                      -..|+|.||+|+.+|+.|.+.|.       +..||+||...
T Consensus       302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~  342 (369)
T PRK14282        302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVH  342 (369)
T ss_pred             CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            35689999999999999975552       23478888773

>PRK14278 chaperone protein DnaJ; Provisional

Probab=94.34  E-value=0.095  Score=50.97  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=24.9

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  237 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~  237 (301)
                      ..++|.||+|+++|+.|.+.|.+       ..||+||..
T Consensus       290 ~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~  328 (378)
T PRK14278        290 GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHV  328 (378)
T ss_pred             CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEE
Confidence            56899999999999999766532       347888765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=94.23  E-value=0.099  Score=50.89  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=26.6

Q ss_pred             cccEEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195          204 ELPVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  239 (301)
Q Consensus       204 e~k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~  239 (301)
                      .-..|+|.||+|+++|++|.+.|.+       ..||+||..++
T Consensus       300 dG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V  342 (382)
T PRK14291        300 DGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHI  342 (382)
T ss_pred             CCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            3356899999999999999755522       34788887643

>PRK14301 chaperone protein DnaJ; Provisional

Probab=93.87  E-value=0.11  Score=50.34  Aligned_cols=32  Identities=9%  Similarity=0.078  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195          208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  239 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~  239 (301)
                      ++|.||+|+++|+.|.+.|.|       ..||+||...+
T Consensus       292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V  330 (373)
T PRK14301        292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSV  330 (373)
T ss_pred             EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEE
Confidence            899999999999999766533       34788776643

>PRK14290 chaperone protein DnaJ; Provisional

Probab=93.80  E-value=0.13  Score=49.70  Aligned_cols=33  Identities=9%  Similarity=0.060  Sum_probs=25.0

Q ss_pred             cEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK  238 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~  238 (301)
                      ..++|.||+|++.|+.|.+.|.       ...||+||..+
T Consensus       296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~  335 (365)
T PRK14290        296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRIN  335 (365)
T ss_pred             ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            3589999999999999975552       23578877663

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.69  E-value=0.15  Score=49.41  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCCcEEecCCCCCC-------CceehhhH
Q 022195          208 LEFLIQPQPKKGYGVFGGGWERP-------ANVFMAAK  238 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~~~-------~~vfv~~~  238 (301)
                      ++|.||+|...|..+.++|.+-|       ||+||...
T Consensus       292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~  329 (371)
T COG0484         292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVK  329 (371)
T ss_pred             EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEE
Confidence            89999999999999976664333       78887663

>PRK14298 chaperone protein DnaJ; Provisional

Probab=93.67  E-value=0.14  Score=49.71  Aligned_cols=30  Identities=7%  Similarity=-0.028  Sum_probs=23.8

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195          208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  237 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~  237 (301)
                      ++|.||+|+..|+.+.+.|.+       ..||+||..
T Consensus       293 i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~  329 (377)
T PRK14298        293 VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKV  329 (377)
T ss_pred             EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEE
Confidence            799999999999998766532       247888876

>PRK14281 chaperone protein DnaJ; Provisional

Probab=93.65  E-value=0.14  Score=50.23  Aligned_cols=31  Identities=6%  Similarity=0.032  Sum_probs=24.1

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195          208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  238 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~  238 (301)
                      ++|.||+|+.+|+.+.+.|.|       ..||+||..+
T Consensus       314 i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~  351 (397)
T PRK14281        314 VKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVN  351 (397)
T ss_pred             EEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            799999999999999766533       2378888753

>PRK14286 chaperone protein DnaJ; Provisional

Probab=93.51  E-value=0.16  Score=49.37  Aligned_cols=32  Identities=9%  Similarity=-0.012  Sum_probs=24.2

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAA  237 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~  237 (301)
                      ..|+|.||+|+..|+.+.+.|.+.       .||+||..
T Consensus       297 ~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~  335 (372)
T PRK14286        297 KKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIV  335 (372)
T ss_pred             CEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEE
Confidence            468999999999999997665332       36777665

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=93.27  E-value=0.14  Score=42.19  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=37.9

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG  103 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~  103 (301)
                      .+.-..-..||||++..+.++|.+.|.+|-...+|++++..-  .=..|..|.+.|..+
T Consensus        54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY--LQSKV~rAKErl~~E  110 (127)
T PF03656_consen   54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY--LQSKVFRAKERLEQE  110 (127)
T ss_dssp             ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH--HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH--HHHHHHHHHHHHHHH
Confidence            455556788999999999999999999999999999886531  113477788877644

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=93.06  E-value=0.19  Score=49.08  Aligned_cols=31  Identities=6%  Similarity=0.072  Sum_probs=24.0

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC------CCCceehhh
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE------RPANVFMAA  237 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~------~~~~vfv~~  237 (301)
                      .++|.||+|+++|+.|.+.|.+      ..||+||..
T Consensus       320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~  356 (392)
T PRK14279        320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTV  356 (392)
T ss_pred             eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
Confidence            4799999999999999766633      347877765

>PRK14294 chaperone protein DnaJ; Provisional

Probab=93.01  E-value=0.22  Score=48.24  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195          208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  239 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~  239 (301)
                      ++|.||+|+.+|++|.+.|.+       ..||+||...+
T Consensus       292 ~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v  330 (366)
T PRK14294        292 RELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEV  330 (366)
T ss_pred             EEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            599999999999999755522       35788887633

>PRK14288 chaperone protein DnaJ; Provisional

Probab=92.92  E-value=0.26  Score=47.81  Aligned_cols=33  Identities=9%  Similarity=-0.014  Sum_probs=24.8

Q ss_pred             cEEEEEeCCCCCCCcEEecCCCCC-------CCceehhhH
Q 022195          206 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAAK  238 (301)
Q Consensus       206 k~LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~~  238 (301)
                      ..|+|.||+|+..|+.+.+.|.|-       -||+||..+
T Consensus       285 ~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~  324 (369)
T PRK14288        285 DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQ  324 (369)
T ss_pred             CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            358999999999999987555332       278888763

>PRK14280 chaperone protein DnaJ; Provisional

Probab=92.82  E-value=0.22  Score=48.41  Aligned_cols=31  Identities=10%  Similarity=0.113  Sum_probs=23.5

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  237 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~  237 (301)
                      .++|.||+|+.+|+.|.+.|.+       ..||+||..
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~  331 (376)
T PRK14280        294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVV  331 (376)
T ss_pred             eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEE
Confidence            3799999999999998755532       347887765

>PRK14297 chaperone protein DnaJ; Provisional

Probab=92.82  E-value=0.21  Score=48.61  Aligned_cols=31  Identities=10%  Similarity=0.110  Sum_probs=23.9

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  237 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~  237 (301)
                      .++|.||+|+.+|+.+.+.|.+       ..||+||..
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~  336 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTV  336 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEE
Confidence            3799999999999998755532       347888765

>PRK14289 chaperone protein DnaJ; Provisional

Probab=92.68  E-value=0.22  Score=48.58  Aligned_cols=32  Identities=6%  Similarity=0.002  Sum_probs=24.3

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  238 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~  238 (301)
                      .++|.||+|+++|++|.+.|.+       ..||+||..+
T Consensus       305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~  343 (386)
T PRK14289        305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVS  343 (386)
T ss_pred             eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEE
Confidence            4799999999999999765532       3578877663

>PRK14276 chaperone protein DnaJ; Provisional

Probab=92.68  E-value=0.24  Score=48.20  Aligned_cols=32  Identities=13%  Similarity=0.072  Sum_probs=24.3

Q ss_pred             EEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195          207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK  238 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~  238 (301)
                      .++|.||+|+++|+.|.+.|.       ...||+||...
T Consensus       297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  335 (380)
T PRK14276        297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVN  335 (380)
T ss_pred             cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence            379999999999999875552       23578887753

>PRK10767 chaperone protein DnaJ; Provisional

Probab=92.56  E-value=0.25  Score=47.86  Aligned_cols=32  Identities=9%  Similarity=0.046  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195          207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK  238 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~  238 (301)
                      .++|.||+|+..|+.+.+.|.       +..||+||...
T Consensus       289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~  327 (371)
T PRK10767        289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVV  327 (371)
T ss_pred             cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence            589999999999999875552       23488888763

>PRK14277 chaperone protein DnaJ; Provisional

Probab=92.49  E-value=0.26  Score=48.02  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             EEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022195          208 LEFLIQPQPKKGYGVFGGGWER-------PANVFMAA  237 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~  237 (301)
                      ++|.||+|+..|+.|.+.|.|.       .||+||..
T Consensus       307 ~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~  343 (386)
T PRK14277        307 VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKV  343 (386)
T ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEE
Confidence            7999999999999997666443       36777665

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=92.40  E-value=0.29  Score=47.05  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=24.7

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  238 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~  238 (301)
                      .++|.||+|+.+|+.+.+.|.+       ..||+||...
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~  332 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVK  332 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEE
Confidence            5899999999999998755532       3578887763

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=91.78  E-value=0.35  Score=46.90  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=24.1

Q ss_pred             EEEEEeCCCCCCCcEEecCCC-------CCCCceehhh
Q 022195          207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAA  237 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~  237 (301)
                      .++|.||+|+.+|+.|.+.|.       +..||+||..
T Consensus       289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~  326 (371)
T PRK14287        289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQV  326 (371)
T ss_pred             CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEE
Confidence            379999999999999875552       2348888876

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=91.67  E-value=0.21  Score=40.23  Aligned_cols=43  Identities=14%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             cccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195          149 CIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  194 (301)
Q Consensus       149 CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg  194 (301)
                      -..|..|.+.+..+|..|.|.|......  ++ .++++..|+.|.|
T Consensus        41 ~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~g-~~q~~~~C~~C~G   83 (111)
T PLN03165         41 TQPCFPCSGTGAQVCRFCVGSGNVTVEL--GG-GEKEVSKCINCDG   83 (111)
T ss_pred             CCCCCCCCCCCCcCCCCCcCcCeEEEEe--CC-cEEEEEECCCCCC
Confidence            4567777777778999999999766433  33 3567889999988

>PRK14283 chaperone protein DnaJ; Provisional

Probab=91.47  E-value=0.45  Score=46.21  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  238 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~  238 (301)
                      .++|.||+|+++|+.|.+.|.|       ..||+||...
T Consensus       297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~  335 (378)
T PRK14283        297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVK  335 (378)
T ss_pred             eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            6899999999999999766533       2378887663

>PRK14296 chaperone protein DnaJ; Provisional

Probab=91.46  E-value=0.42  Score=46.39  Aligned_cols=31  Identities=0%  Similarity=0.004  Sum_probs=24.1

Q ss_pred             EEEEeCCCCCCCcEEecCCCCCC--------CceehhhH
Q 022195          208 LEFLIQPQPKKGYGVFGGGWERP--------ANVFMAAK  238 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~~~--------~~vfv~~~  238 (301)
                      ++|.||+++..|+.+.+.|.|-|        ||+||..+
T Consensus       302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~  340 (372)
T PRK14296        302 IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVN  340 (372)
T ss_pred             EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEE
Confidence            79999999999999976664433        67777653

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=90.07  E-value=0.081  Score=30.20  Aligned_cols=18  Identities=33%  Similarity=0.890  Sum_probs=15.2

Q ss_pred             ccccccccccCCCCCccc
Q 022195          142 LFVDENACIGCRECVHHA  159 (301)
Q Consensus       142 ifvde~~CigC~~C~g~a  159 (301)
                      +++|.++|+||+.|....
T Consensus         3 ~~iD~~rCiGC~~C~~AC   20 (22)
T PF12797_consen    3 MVIDLERCIGCGACEVAC   20 (22)
T ss_pred             eEEccccccCchhHHHhh
Confidence            678999999999998544

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=89.84  E-value=0.27  Score=43.17  Aligned_cols=53  Identities=11%  Similarity=-0.114  Sum_probs=34.7

Q ss_pred             cceeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCCC
Q 022195          160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW  227 (301)
Q Consensus       160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~  227 (301)
                      ..+|..|.|.|....          -...|+.|+|    .+.+...+.+.+.+ .|+.+|++|...-+
T Consensus        99 ~~~C~~C~G~G~~i~----------~~~~C~~C~G----~G~v~~~~~~~~k~-~g~~~g~~it~~~~  151 (186)
T TIGR02642        99 SCKCPRCRGTGLIQR----------RQRECDTCAG----TGRFRPTVEDLLKS-FGVDSGAAIVLKDN  151 (186)
T ss_pred             CCcCCCCCCeeEEec----------CCCCCCCCCC----ccEEeeeEEEEEEe-eeccCCceeeHHHh
Confidence            345666667775322          1145666665    45566666778888 99999999987654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=89.58  E-value=0.85  Score=45.07  Aligned_cols=32  Identities=16%  Similarity=0.048  Sum_probs=23.6

Q ss_pred             cEEEEEeCCC--CCCCcEEecCCCC--------CCCceehhh
Q 022195          206 PVLEFLIQPQ--PKKGYGVFGGGWE--------RPANVFMAA  237 (301)
Q Consensus       206 k~LeV~Ip~G--~~dG~~I~g~G~~--------~~~~vfv~~  237 (301)
                      ..|+|.||+|  +..|+.+.+.|.|        .-||+||..
T Consensus       301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~  342 (421)
T PTZ00037        301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTF  342 (421)
T ss_pred             CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEE
Confidence            4589999999  9999988655522        237888766

>PRK14293 chaperone protein DnaJ; Provisional

Probab=89.32  E-value=0.82  Score=44.39  Aligned_cols=30  Identities=7%  Similarity=0.006  Sum_probs=23.3

Q ss_pred             EEEEeCCCCCCCcEEecCCCC--------CCCceehhh
Q 022195          208 LEFLIQPQPKKGYGVFGGGWE--------RPANVFMAA  237 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~~--------~~~~vfv~~  237 (301)
                      ++|.||+|++.|+++.+.|.|        .-||+||..
T Consensus       295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~  332 (374)
T PRK14293        295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITV  332 (374)
T ss_pred             EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEE
Confidence            789999999999998765522        237888776

>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues

Probab=88.32  E-value=0.14  Score=37.19  Aligned_cols=54  Identities=24%  Similarity=0.434  Sum_probs=43.1

Q ss_pred             cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195          141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH  198 (301)
Q Consensus       141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig  198 (301)
                      +++.+..+|++-+.|+...|.+|...+. |..   ...+.....+..++..||.+++.
T Consensus         7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~   60 (64)
T PF06902_consen    7 TVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALS   60 (64)
T ss_pred             EEEECcCcccchhhhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcE
Confidence            5667889999999999999999999887 654   33344567788999999987764

These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).

>PRK14292 chaperone protein DnaJ; Provisional

Probab=87.80  E-value=1.2  Score=43.10  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=24.0

Q ss_pred             EEEEeCCCCCCCcEEecCCC-------CCCCceehhhHH
Q 022195          208 LEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAKA  239 (301)
Q Consensus       208 LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~~  239 (301)
                      .+|.||+|+++|+.+.+.|.       ..+||+||..+.
T Consensus       290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v  328 (371)
T PRK14292        290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEI  328 (371)
T ss_pred             EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            47999999999999875552       235888877643

>PF13446 RPT: A repeated domain in UCH-protein

Probab=85.20  E-value=1.9  Score=30.61  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=33.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d  102 (301)
                      .+.|++|||+++.+.+.|-.+|+.... -.|        .....+.+|..++.+
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P--------~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP--------SQKDTLREALRVIAE   49 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh--------HhHHHHHHHHHHHHH
Confidence            457999999999999999999998877 112        223345666666653

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.76  E-value=1.6  Score=41.43  Aligned_cols=54  Identities=24%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195           60 EANGQEIKEAYRKLQKKYHPDIAGQ------KGHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        60 ~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      -++..+|..+|+..++..||++...      ...+.++.|.+||.+|++...|..+|...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            3577889999999999999998742      34568999999999999876666665543

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=80.27  E-value=3.3  Score=36.62  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhh
Q 022195           58 SVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM  101 (301)
Q Consensus        58 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~  101 (301)
                      +++||.+||.+|+.++..+|--|      .+.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd------~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD------EKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHH
Confidence            57899999999999999999333      345567999999765

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1fxr_A	64	Crystal Structure Of The Ferredoxin I From Desulfov		1e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-08
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		4e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		8e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		4e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-04
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-04

>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio Africanus At 2.3 Angstroms Resolution Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD 201
            +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW D
Sbjct: 4   FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63
Query: 202 R 202
Sbjct: 64  E 64

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKVLMRGDLR 106
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 21  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 107 KDYD 110
           K YD
Sbjct: 81  KKYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKVLMRGDLR 106
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 107 KDYD 110
           K YD
Sbjct: 62  KKYD 65

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRK 107
           +YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     RK
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 108 DYDASIGQMRFHFGTNASAG 127
            YDA        +G+  S+G
Sbjct: 68  QYDA--------YGSGPSSG 79

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPD---IAGQKGHEHTLLLNEAYKVLMRGDLR 106
           NYYE+LGV   A+ ++IK+AYRKL  ++HPD      ++  +   L++EAY+VL     R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 107 KDYD 110
             YD
Sbjct: 70  SLYD 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
           K+  YY++LGV   A  +E+K+AYRKL  KYHPD    +G E    +++AY+VL     R
Sbjct: 4   KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-EKFKQISQAYEVLSDAKKR 62
Query: 107 KDYD 110
           + YD
Sbjct: 63  ELYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
           R  YD
Sbjct: 62  RAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
           R  YD
Sbjct: 62  RAAYD 66

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
           R  YD
Sbjct: 62  RAAYD 66

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 103
           A + K+YY +LGV    + + IK AYR+L +KYHPD++ +   E     L EA++VL   
Sbjct: 24  AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83
Query: 104 DLRKDYD 110
             R +YD
Sbjct: 84  QRRAEYD 90

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLRKD 108
           +YYE+LGVS  A+ +++K+AYR+L  K+HPD     G       +  AY VL   + RK 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 109 YDASIGQMRFHFGTNASAG 127
           YD         FG+  S+G
Sbjct: 68  YD--------QFGSGPSSG 78

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 52  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDYD 110
           Y +LGVS  A+  +IK+AY+KL +++HPD     G E   + +++AY++L   + R +YD
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 111 ASIGQMRFHFGTNASAG 127
                   H+G+  S+G
Sbjct: 80  --------HYGSGPSSG 88

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 51  YYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDY 109
           YY++LGV   A+ ++IK+A+ KL  KYHPD       E     + EAY+ L   + RK+Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 110 DASIGQMRFHFGTNAS 125
           D ++G   F  G   S
Sbjct: 69  D-TLGHSAFTSGKGQS 83

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
           K+  YY++LGV  +A+  E+K+AYRK+  K+HPD     G E    +++AY+VL     R
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKKR 64
Query: 107 KDYD 110
           + YD
Sbjct: 65  QIYD 68

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 103
            S+ K+YY ++GV    + + IK AYR+L +KYHPD++ +   E     + EA++VL   
Sbjct: 1   GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 60
Query: 104 DLRKDYD 110
             R +YD
Sbjct: 61  QRRAEYD 67

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
           K+   Y+LLGVS  AN QE+K+ YRK   KYHPD       E    ++EA+++L     R
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPD-KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 107 KDYD 110
           + YD
Sbjct: 65  EIYD 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 50  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLN---EAYKVLMRGDLR 106
           +YYE+L V  +A+ + IK+AYRKL  K+HPD   +   E         EAY+VL     R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 107 KDYDASIGQMRFHFGTNASAG 127
             YD         +G+  S+G
Sbjct: 70  DIYD--------RYGSGPSSG 82

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRK 107
           K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G E     + EAY VL     R+
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 108 DYD 110
            +D
Sbjct: 63  IFD 65

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 80
           + S+K++YY++LGV   A  QEI +AYRKL  ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 80
           + S+K++YY++LGV   A  QEI +AYRKL  ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	6e-27
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	5e-26
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	5e-20
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-18
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-18
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	7e-18
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	7e-17
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-16
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-16
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-16
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-16
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-16
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-16
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-16
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	4e-16
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-16
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	8e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-15
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-15
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-15
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-15
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-15
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	7e-15
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	7e-15
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	2e-14
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	5e-13
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	5e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	9e-13
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	8e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	8e-09
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	1e-07
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 99.4 bits (248), Expect = 6e-27
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 200
             +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW 
Sbjct: 3   KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62

Query: 201 D 201
           D
Sbjct: 63  D 63

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 96.7 bits (241), Expect = 5e-26
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 199
            + +D   CIGC  CV      F M +    A V      ++   + ++D+CPV  I  
Sbjct: 1   TIVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAEC-AQDAIDACPVEAISK 58

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 80.6 bits (199), Expect = 5e-20
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 143 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 198
               + C+ C  CV    + F M+E    A V     D D  +E ++DSCP   I 
Sbjct: 2   IEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDC-VEEAIDSCPAEAIV 56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 80.3 bits (198), Expect = 1e-18
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--------IAGQKGHEHTLLLNE 95
               KK++Y +LG    AN  ++K+ Y+KL   YHPD           ++  +  + +++
Sbjct: 5   EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64

Query: 96  AYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALF------------ 143
           A+K+L   + +++YD    +          A              + +            
Sbjct: 65  AWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVS 124

Query: 144 ---VDENACIGCREC 155
               +E + I C  C
Sbjct: 125 KDEAEEVSLISCDTC 139

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 79.6 bits (196), Expect = 2e-18
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 46  SKKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
            +     +LLG+   A  N   +++AY K  K++HPD  G    E    +N  YK +  G
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDG 65

Query: 104 DLRKDYDA--SIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHAS 160
                             F ++ + G      K  P           C+ C   + H +
Sbjct: 66  VKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPECVKKMSTNCICLLCLLRMKHEN 124

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 75.9 bits (187), Expect = 7e-18
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 39  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAY 97
           G     ++   + Y +LGVS  A+  +IK+AY+KL +++HPD     G E     +++AY
Sbjct: 7   GILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAY 66

Query: 98  KVLMRGDLRKDYDASIGQMRFHFGTNASAG 127
           ++L   + R +YD        H+G+  S+G
Sbjct: 67  EILSNEEKRTNYD--------HYGSGPSSG 88

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 72.7 bits (179), Expect = 7e-17
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRG 103
           K+  YY++LGV  +A+  E+K+AYRK+  K+HPD      ++  +    +++AY+VL   
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQ----ISQAYEVLSDE 61

Query: 104 DLRKDYD 110
             R+ YD
Sbjct: 62  KKRQIYD 68

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 106
             +YYE+LGVS  A+ +++K+AYR+L  K+HPD     G       +  AY VL   + R
Sbjct: 6   SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65

Query: 107 KDYD 110
           K YD
Sbjct: 66  KQYD 69

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 43  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLM 101
            R    K+ +++LGV   A+  E+ +AYRKL    HPD     G  +    +  A   L+
Sbjct: 21  RRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80

Query: 102 RGDLRKDYDA 111
           +         
Sbjct: 81  KNIKSGPSSG 90

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 46  SKKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
            +     +LLG+   A  N   +++AY K  K++HPD  G +  E    +N  YK +  G
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--EKMKKMNTLYKKMEDG 62

Query: 104 DLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDE 146
                     G                  W      E LF  E
Sbjct: 63  VKYAHQP-DFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSE 104

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLM 101
           + K+YY +LGV    + + IK AYR+L +KYHPD+     A  K  +    L EA++VL 
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD----LAEAWEVLK 81

Query: 102 RGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKG 135
               R +YD  + Q R   G          S+  
Sbjct: 82  DEQRRAEYDQ-LWQHRNDPGFGRQRQTHEQSYSQ 114

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 16/99 (16%)

Query: 37  CNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--------IAGQKGHE 88
            +       + KK++Y +LG    AN  ++K+ Y+KL   YHPD           ++  +
Sbjct: 4   GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 89  HTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAG 127
             + +++A+K+L   + +K YD           +  S+G
Sbjct: 64  KFIEIDQAWKILGNEETKKKYDL--------QRSGPSSG 94

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYK 98
           +    +YY++LGV   A+ +EIK+AY +L KKYHPD       A +K  +    L EAY+
Sbjct: 3   SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ----LAEAYE 58

Query: 99  VLMRGDLRKDYD 110
           VL     RK YD
Sbjct: 59  VLSDEVKRKQYD 70

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 106
             +YY++LGV   A+ ++IK+A+ KL  KYHPD       E     + EAY+ L   + R
Sbjct: 6   SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRR 65

Query: 107 KDYDASIGQMRF-HFGTNASAGFS 129
           K+YD         H    +  G S
Sbjct: 66  KEYD------TLGHSAFTSGKGQS 83

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 48  KKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLM 101
            +N Y++L V+ E  + Q++ +AYR L +K+HPD            E   ++  AY+ L 
Sbjct: 14  LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73

Query: 102 RGDLRKDYD---ASIGQMRFHF 120
             + + +YD       Q  +++
Sbjct: 74  DDEAKTNYDYYLDHPDQRFYNY 95

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 71.3 bits (175), Expect = 4e-16
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 39  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLL 92
           G  G+ +  +   Y+LLGV   A   +IK AY +    YHPD       A ++       
Sbjct: 7   GSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTR---- 62

Query: 93  LNEAYKVLMRGDLRKDYD 110
           +++AY VL    LR+ YD
Sbjct: 63  ISQAYVVLGSATLRRKYD 80

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAY 97
           R+   ++YY LLG    ++ ++I   ++    + HPD       A +   +    L +A 
Sbjct: 15  RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK----LQKAK 70

Query: 98  KVLMRGDLRKDYD---ASIGQMRFHFGTNASAGFSRSS 132
           ++L   + R  YD    S   M F      +     S 
Sbjct: 71  EILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKTSG 108

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 70.7 bits (174), Expect = 8e-16
 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTL-LLNEAYKVLMRGDL 105
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 106 RKDYD-----ASIGQMRFHFGTNASAGFS 129
           R  YD     A         G    A FS
Sbjct: 62  RAAYDQYGHAAFEQGGMGGGGFGGGADFS 90

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 106
            K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G E     + EAY VL     R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 107 KDYD 110
           + +D
Sbjct: 62  EIFD 65

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 47  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRG 103
           K+   Y+LLGVS  AN QE+K+ YRK   KYHPD      +K  E    ++EA+++L   
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKE----ISEAFEILNDP 61

Query: 104 DLRKDYD 110
             R+ YD
Sbjct: 62  QKREIYD 68

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 75.6 bits (185), Expect = 2e-15
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG--QKGHEHTLLLNEAYKVLMR 102
               +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL  
Sbjct: 17  GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76

Query: 103 GDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNT 162
            DLRK YD    +            +S   +      +   +           V+     
Sbjct: 77  EDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELW 136

Query: 163 FVMDEATGC 171
           FV   + G 
Sbjct: 137 FVNFYSPGS 145

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 101
            ++ Y +LG+   A   +IK++YRKL  KYHPD       A  K  E    +N A+ +L 
Sbjct: 16  GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKE----INNAHAILT 71

Query: 102 RGDLRKDYDASIGQMRF-HFGTNASAGFS 129
               R  YD      ++   G   +  F 
Sbjct: 72  DATKRNIYD------KYGSLGLYVAEQFG 94

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 49  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKG-HEHTLLLNEAYKVLMRGDLR 106
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 107 KDYDASIGQMRF-HFGTNASAGFSRSSWKG 135
           K YD      ++   G   + G    SW  
Sbjct: 62  KKYD------KYGEKGLEDNQGGQYESWSY 85

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 68.1 bits (167), Expect = 6e-15
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 18/96 (18%)

Query: 45  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNEAY 97
           +S   NYYE+LGV   A+ ++IK+AYRKL  ++HPD        A +K       ++EAY
Sbjct: 5   SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKL----VSEAY 60

Query: 98  KVLMRGDLRKDYDASIGQMRF-HFGTNASAGFSRSS 132
           +VL     R  YD      R       A  G S  S
Sbjct: 61  EVLSDSKKRSLYD------RAGCDSWRAGGGASGPS 90

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 43  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-------AGQKGHEHTLLLNE 95
             +S   +YYE+L V  +A+ + IK+AYRKL  K+HPD        A ++  +    + E
Sbjct: 3   SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQ----VAE 58

Query: 96  AYKVLMRGDLRKDYD 110
           AY+VL     R  YD
Sbjct: 59  AYEVLSDAKKRDIYD 73

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 143 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD 201
            VD +ACIGC  C +   + F + +  G A+V     D     + + DSCP   I   +
Sbjct: 4   RVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKD-AADSCPTGAISVEE 60

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 68.5 bits (167), Expect = 3e-14
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 46  SKKKNYYELLGVSV-------EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYK 98
                +YEL   +          +   +++ YR+LQ ++HPD+A Q   E +  LN+AY 
Sbjct: 8   RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQG-SEQSSTLNQAYH 66

Query: 99  VLMRGDLRKDYDASIGQ 115
            L     R  Y   + +
Sbjct: 67  TLKDPLRRSQYMLKLLR 83

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 51  YYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNEAYKVLMRG 103
           YYE+L V   A+  +IK+AYR+   ++HPD        A +K  E    + EAY+VL   
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKE----VAEAYEVLSDK 59

Query: 104 DLRKDYDASIGQMRF-HFGTNASAGFSRSSWKGPPRPEALF 143
             R+ YD      R+   G   +      +  G   P    
Sbjct: 60  HKREIYD------RYGREGLTGTGTGPSRAEAGSGGPGLEH 94

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 43  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNE 95
            R S  K    ++  + +    E K+  R+L  K+HPD       IA +        L  
Sbjct: 10  PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKH----LQN 65

Query: 96  AYKVLMRGDLRKDYD 110
               L +   +   D
Sbjct: 66  EINRLEK---QAFLD 77

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 64.6 bits (157), Expect = 6e-13
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 50  NYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVL 100
           +Y+ L G+        Q +   ++ LQ++YHPD              + +  +N+A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 101 MRGDLRKDYDASI 113
               +R +Y  S+
Sbjct: 62  RHPLMRAEYLLSL 74

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 61.9 bits (150), Expect = 9e-13
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 46  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
           + K+   ELL +  +  G    +++AY++     HPD  G   H     LN  +      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTE 65

Query: 104 DLRKDYDAS 112
                 +  
Sbjct: 66  VYNLRMNLG 74

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 143 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV---SVDSCPVNCIHW 199
            VD++ CIG   C     + F M++  G A+ KV+  + ++       ++++CPV+ I  
Sbjct: 5   SVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63

Query: 200 VD 201
            +
Sbjct: 64  EE 65

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 46  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA---GQKGHEHTLL--LNEAYKVL 100
           S+K++YY++LGV   A  QEI +AYRKL  ++HPD      +K         +  A +VL
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

Query: 101 MRGDLRKDYDA 111
              ++RK +D 
Sbjct: 439 SDPEMRKKFDD 449

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.1 bits (128), Expect = 8e-10
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 48  KKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
            K   ++L ++      +++KE +RK+    HPD  G         +NEA   L +  + 
Sbjct: 13  SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--SPFLATKINEAKDFLEKRGIS 70

Query: 107 K 107
           K
Sbjct: 71  K 71

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 54.0 bits (129), Expect = 8e-09
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 36  CCNGRAGERASKKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG------- 86
           C   RA +     ++Y+ L+  +        +++  Y++LQ+  HPD   Q+        
Sbjct: 30  CPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFS 89

Query: 87  HEHTLLLNEAYKVLMRGDLRKDYD 110
            +H+ L+N+AYK L+    R  Y 
Sbjct: 90  EKHSTLVNDAYKTLLAPLSRGLYL 113

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Length = 81

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 139 PEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--------SVD 190
           P+   VD+  CI C  C   A + +  DE  G A V +        +          + +
Sbjct: 1   PKYTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFE 59

Query: 191 SCPVNCIHWVD 201
            CP + I   D
Sbjct: 60  GCPTDSIKVAD 70

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 52  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHT-----LLLNEAYKVLMRGDLR 106
           ++ +G++     +++K+ YRK     HPD A  + +E       + LN+A+        +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 107 KDY 109
             Y
Sbjct: 180 PLY 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 91/237 (38%)

Query: 43  ERASKKKNYYELLGVSVEA-----NGQEIKEAYRK-LQKKYHPDIAGQKGH-EHTLLL-- 93
           E    +  Y ++L V  +A     + +++++  +  L K+    I   K     TL L  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 94  ------NEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSW----KGPPRPEALF 143
                  E  +  +   LR +Y                  F  S      + P     ++
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYK-----------------FLMSPIKTEQRQPSMMTRMY 112

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDRE 203
           ++       R+ +++ +  F                               N    V R 
Sbjct: 113 IE------QRDRLYNDNQVFA----------------------------KYN----VSRL 134

Query: 204 ELPVLEF---LIQPQPKKG---YGVFGGG--WERPANVFMAAKA-FNKQLQQQAAGG 251
           + P L+    L++ +P K     GV G G  W       +A     + ++Q +    
Sbjct: 135 Q-PYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDFK 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.9
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.81
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.81
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.81
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.81
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.81
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.81
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.8
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.8
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.79
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.79
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.78
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.78
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.76
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.76
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.72
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.72
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.72
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.72
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.7
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.69
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.65
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.65
2guz_A	71	Mitochondrial import inner membrane translocase su	99.63
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.63
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.62
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.61
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.6
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.58
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.47
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.93
2guz_B	65	Mitochondrial import inner membrane translocase su	98.87
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	97.89
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	97.03
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.01
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	96.76
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	93.62
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	92.98
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	92.3
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	90.63
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	90.47
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	88.69
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.49
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	87.49
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	86.54
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	83.05

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.90  E-value=2.9e-26  Score=215.68  Aligned_cols=195  Identities=21%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccccccc-ccc
Q 022195           43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR-FHF  120 (301)
Q Consensus        43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~-~~~  120 (301)
                      ++.+...|||+||||+++|+.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++.... .++
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~  101 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGF  101 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCc
Confidence            4456678999999999999999999999999999999998764 56799999999999999999999999853321 111


Q ss_pred             cccCCC--CcccccCCCCCCCCcccccccccccCCC---CCccccc-----eeeeeC-CcceEEEEEeeCCccccccccc
Q 022195          121 GTNASA--GFSRSSWKGPPRPEALFVDENACIGCRE---CVHHASN-----TFVMDE-ATGCARVKVQYGDSDQNIEVSV  189 (301)
Q Consensus       121 ~~~~f~--g~g~~~~~gp~r~~difvde~~CigC~~---C~g~ap~-----tf~~c~-g~G~~~v~~q~g~~~~~iq~aC  189 (301)
                      +.. +.  +.++.    .....|+|-+.+--.+-+.   ....+..     .+...+ -.|....          +....
T Consensus       102 ~~~-~~~~~~~f~----~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~----------i~i~~  166 (329)
T 3lz8_A          102 GRQ-RQTHEQSYS----QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRT----------ISYNL  166 (329)
T ss_dssp             ----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEE----------EEEEE
T ss_pred             ccc-cccccCCcC----CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceE----------EEEEE
Confidence            110 00  00110    0011233322110000000   0000000     000000 0121111          11111


Q ss_pred             cCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          190 DSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       190 ~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +.|.+  .+...+...+.|+|.||+|+++|++|+..|       ++.+||+|+..+...+..++++.+||+-
T Consensus       167 ~v~~g--~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~  236 (329)
T 3lz8_A          167 PVYNV--FGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEI  236 (329)
T ss_dssp             EECCS--CC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEE
T ss_pred             EeecC--CeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEE
Confidence            11211  233344445689999999999999997554       2457899999977666666677766654

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.81  E-value=5.7e-21  Score=148.09  Aligned_cols=74  Identities=28%  Similarity=0.503  Sum_probs=66.0

Q ss_pred             CCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195           42 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        42 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      ....+...|||+||||+++|+.+|||+|||+|++++|||+++.        .+.+.|+.|++||++|+||.+|..||..+
T Consensus         9 ~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A            9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             CCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             ccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            3455678999999999999999999999999999999999873        24569999999999999999999999986


Q ss_pred             cc
Q 022195          114 GQ  115 (301)
Q Consensus       114 ~~  115 (301)
                      ..
T Consensus        89 ~~   90 (94)
T 1wjz_A           89 SG   90 (94)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=141.74  Aligned_cols=71  Identities=44%  Similarity=0.634  Sum_probs=64.5

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      .....|||+||||+++++.++||++||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            4567899999999999999999999999999999999974  3567999999999999999999999998654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=147.88  Aligned_cols=75  Identities=32%  Similarity=0.498  Sum_probs=67.2

Q ss_pred             CCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195           41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        41 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      ...+.+...|||+||||+++|+.+|||+|||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus         9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A            9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            34566778999999999999999999999999999999999964  3567999999999999999999999997643

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.5e-20  Score=142.23  Aligned_cols=71  Identities=37%  Similarity=0.522  Sum_probs=64.1

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhcccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      .....|||+||||+++++.++||+|||+|++++|||+++..   +.+.|+.|++||++|+||.+|..||..+..
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            34568999999999999999999999999999999999863   456899999999999999999999997643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=141.55  Aligned_cols=72  Identities=36%  Similarity=0.561  Sum_probs=65.1

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .....|||+||||+++++.++||++|++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            35578999999999999999999999999999999999764 4679999999999999999999999986543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2e-20  Score=143.59  Aligned_cols=72  Identities=33%  Similarity=0.549  Sum_probs=65.2

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .....|||+||||+++++.+|||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            34568999999999999999999999999999999999864 4679999999999999999999999987544

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.80  E-value=2e-20  Score=139.92  Aligned_cols=69  Identities=35%  Similarity=0.514  Sum_probs=63.2

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ..|||+||||+++++.++||+||++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            46899999999999999999999999999999999764 5679999999999999999999999986544

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=3.4e-20  Score=142.24  Aligned_cols=73  Identities=29%  Similarity=0.499  Sum_probs=65.5

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ......|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus        12 ~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             hccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            344578999999999999999999999999999999999864 5679999999999999999999999986543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=3.8e-20  Score=143.05  Aligned_cols=72  Identities=39%  Similarity=0.594  Sum_probs=64.8

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .....|||+||||+++++.++||++||+|++++|||+++..   +.+.|+.|++||++|+||.+|..||..+...
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            34567999999999999999999999999999999999763   4578999999999999999999999987544

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.79  E-value=3.4e-20  Score=137.30  Aligned_cols=68  Identities=37%  Similarity=0.603  Sum_probs=61.9

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||..+.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3467999999999999999999999999999999999754 6799999999999999999999999763

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.78  E-value=4.8e-20  Score=142.63  Aligned_cols=70  Identities=39%  Similarity=0.525  Sum_probs=63.9

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ....|||+||||+++++.+|||++||+|++++|||+++.. .+.|++|++||++|+||.+|..||..+...
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            3568999999999999999999999999999999999754 579999999999999999999999987543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.78  E-value=7.5e-20  Score=143.48  Aligned_cols=68  Identities=32%  Similarity=0.486  Sum_probs=62.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .|||+||||+++|+.+|||+|||+|++++|||+++..   +.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            5899999999999999999999999999999999864   4579999999999999999999999987544

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=2.8e-19  Score=142.55  Aligned_cols=72  Identities=29%  Similarity=0.457  Sum_probs=65.0

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      ......|||+||||+++|+.+|||+|||+|++++|||+++..  +.+.|+.|++||++|+||.+|..||..+..
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            345578999999999999999999999999999999999753  467999999999999999999999998743

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.5e-19  Score=143.47  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=64.6

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      .....|||+||||+++|+.++||+|||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            3456899999999999999999999999999999999974  3567999999999999999999999998754

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.76  E-value=1.9e-19  Score=141.99  Aligned_cols=69  Identities=39%  Similarity=0.623  Sum_probs=63.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ..|||+||||+++++.++||+|||+|++++|||+++.  .+.+.|++|++||++|+||.+|..||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence            4789999999999999999999999999999999974  35679999999999999999999999988654

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=3.6e-18  Score=131.57  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=57.1

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccc
Q 022195           47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKD  108 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~  108 (301)
                      ...|||+||||+++|+.+|||+|||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            358999999999999999999999999999999999764 56799999999999999999875

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.72  E-value=3.7e-18  Score=150.65  Aligned_cols=98  Identities=26%  Similarity=0.453  Sum_probs=79.3

Q ss_pred             cCCCCCCCCCCCC-CccccceeccCCCCCCCCCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------
Q 022195           16 VNPNKSSLRARWG-QRCSVIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------   85 (301)
Q Consensus        16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------   85 (301)
                      ..+.||++...|+ .....++|.....-.......|||+||||+++  ++..+||++||+|++++|||+++..       
T Consensus         9 ~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~   88 (207)
T 3bvo_A            9 NYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDF   88 (207)
T ss_dssp             --CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHH
T ss_pred             CCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH
Confidence            4567777776653 33456888777666666667899999999987  7999999999999999999998753       


Q ss_pred             chHHHHHHHHHHhhhhcccccccccccc
Q 022195           86 GHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        86 ~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      +.+.|+.|++||++|+||.+|..||..+
T Consensus        89 a~~~f~~In~AY~vLsdp~~R~~Yd~~l  116 (207)
T 3bvo_A           89 SEKHSTLVNDAYKTLLAPLSRGLYLLKL  116 (207)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence            2357899999999999999999999754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.72  E-value=1.5e-18  Score=138.13  Aligned_cols=72  Identities=28%  Similarity=0.464  Sum_probs=64.4

Q ss_pred             CCCccCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~-----~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .....|||+||||+++| +.+|||+|||+|++++|||+++.     .+.+.|+.|++||++|+||.+|..||..+...
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            34478999999999999 99999999999999999999975     24569999999999999999999999987543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=145.29  Aligned_cols=71  Identities=28%  Similarity=0.523  Sum_probs=64.2

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHHhhhhcccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG--------HEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--------~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      .+...|||+||||+++++.++||+|||+|++++|||+++...        .+.|+.|++||++|+||.+|..||..+..
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            456789999999999999999999999999999999997652        47899999999999999999999987753

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.70  E-value=2.1e-18  Score=138.46  Aligned_cols=65  Identities=29%  Similarity=0.394  Sum_probs=60.4

Q ss_pred             ccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195           48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ..+||+||||+++|+.  ++||+|||+|++++|||+++.  .+.|++|++||++|+||.+|..||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  999999999999999999876  5799999999999999999999998653

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.69  E-value=8.8e-18  Score=128.88  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=60.4

Q ss_pred             CCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccc
Q 022195           41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD  108 (301)
Q Consensus        41 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~  108 (301)
                      +........++|+||||+++|+.+|||+|||+|+++||||+++..   +.+.|++|++||++|+|...|..
T Consensus         8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A            8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            445566778999999999999999999999999999999999874   56799999999999999888744

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=2e-17  Score=144.60  Aligned_cols=68  Identities=44%  Similarity=0.673  Sum_probs=62.3

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            589999999999999999999999999999999964  35679999999999999999999999987543

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=7.5e-18  Score=144.40  Aligned_cols=66  Identities=27%  Similarity=0.338  Sum_probs=58.4

Q ss_pred             CccCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195           47 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      ...|||+||||+++|+  .+|||+|||+|++++|||++++  .+.|++|++||++|+||.+|..||.++.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3478999999999998  6999999999999999999876  4799999999999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.65  E-value=3.2e-17  Score=123.28  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             CccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccc
Q 022195           47 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY  109 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~Y  109 (301)
                      ...++|+||||+++  ++.++||+|||+|++++|||++++  .+.|++|++||++|+|+.+|..+
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHH
Confidence            34679999999999  999999999999999999999864  57999999999999999988873

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-16  Score=118.00  Aligned_cols=62  Identities=24%  Similarity=0.319  Sum_probs=54.9

Q ss_pred             CCCCccCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccc
Q 022195           44 RASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK  107 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~  107 (301)
                      ..+...++|+||||++ +++.+|||++||+|++++|||++++  .+.|++|++||++|+|+..|+
T Consensus         9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A            9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--HHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHhhhhhcC
Confidence            3455678999999999 7999999999999999999999754  579999999999999987764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.63  E-value=5.3e-17  Score=139.27  Aligned_cols=66  Identities=24%  Similarity=0.502  Sum_probs=60.0

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195           49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        49 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      +|||+||||++++  +..+||++||+|++++|||+++...       .+.|..|++||++|+||.+|..||..+.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            4799999999999  9999999999999999999987642       3589999999999999999999999753

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.62  E-value=1.6e-16  Score=137.08  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=57.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhcccccccc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY  109 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~Y  109 (301)
                      .|+|+||||+++|+.++||+|||+|++++|||+++..     +.+.|+.|++||++|+||.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            6899999999999999999999999999999998754     456999999999999999999987

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.61  E-value=1.8e-16  Score=137.11  Aligned_cols=67  Identities=31%  Similarity=0.559  Sum_probs=61.1

Q ss_pred             CCccCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccc
Q 022195           46 SKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        46 ~~~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      ....|||+||      |+++ +++..+||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            4567999999      4665 8999999999999999999999987 6789999999999999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.60  E-value=2.3e-16  Score=121.68  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=49.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhc
Q 022195           49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d  102 (301)
                      .++|++|||+++||.+|||+|||++++++|||++++.     +.+.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999753     45689999999999986

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=2.8e-16  Score=124.54  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHHHhhhhcccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVLMRGDL  105 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~f~~i~~AY~vL~d~~~  105 (301)
                      ......|||+|||++. ||.++||+|||+|++++|||+++..         +.+.|+.|++||++|+|+..
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            3344589999999996 9999999999999999999998631         35699999999999999863

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.47  E-value=4.5e-15  Score=153.06  Aligned_cols=73  Identities=41%  Similarity=0.635  Sum_probs=40.8

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195           44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      ......|||+||||+++|+.+|||+|||+|++++|||+++.  .+.+.|++|++||++|+||.+|..||.++...
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~   90 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   90 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence            34456899999999999999999999999999999999864  35679999999999999999999999988543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.27  E-value=4.9e-13  Score=120.97  Aligned_cols=107  Identities=20%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             ccccCCCCCccc-----cceeeeeCCcceEEEEEeeCCccccccccccCCCc------------ceeeceeeccccEEEE
Q 022195          148 ACIGCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEF  210 (301)
Q Consensus       148 ~CigC~~C~g~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV  210 (301)
                      .-..|..|.+++     +.+|..|.|.|.....++.+++.++++.+|+.|.|            .|.+.+.+.+.+.|+|
T Consensus        37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V  116 (248)
T 1nlt_A           37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEV  116 (248)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEE
T ss_pred             EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEE
Confidence            334566666553     47899999999999889999877888999999987            5888899999999999


Q ss_pred             EeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          211 LIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       211 ~Ip~G~~dG~~I~g~G------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      .||+|+++|++|...|      ++.|+|||+..+...+.+++|+.+||+-
T Consensus       117 ~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~  166 (248)
T 1nlt_A          117 HVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY  166 (248)
T ss_dssp             EECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             EECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence            9999999999997555      2467999999977666677777777765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.93  E-value=4.8e-10  Score=104.97  Aligned_cols=65  Identities=37%  Similarity=0.631  Sum_probs=54.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDAS  112 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~  112 (301)
                      ..++|++||+..+++.++|+++|+++++++|||+.+.+     +.+.|+.|++||++|+||++|..||.+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            35899999999999999999999999999999998764     456999999999999999999999973

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1e-09  Score=79.01  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             cCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195           49 KNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR  102 (301)
Q Consensus        49 ~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d  102 (301)
                      ...|.||||+++   ++.++|+++||+|....|||++++.  .....|++|+++|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~--yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF--YLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHH
Confidence            456899999999   9999999999999999999998653  456779999999964

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=97.89  E-value=5.4e-07  Score=77.47  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=48.5

Q ss_pred             ccccCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          187 VSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       187 ~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      ..|..|.|    .+.+.+.+.|+|.||+|+++|++|...|      ++.+||+|+..+...+..++++.+|++-
T Consensus        28 ~~c~~c~G----~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~   97 (181)
T 3agx_A           28 HKRLNPDG----KSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY   97 (181)
T ss_dssp             EEEECTTS----SCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             cccCCCCC----ceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEE
Confidence            34666655    5567777899999999999999997554      3567899999977666666777766664

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=97.03  E-value=4.4e-05  Score=65.35  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=42.7

Q ss_pred             eeeccccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          200 VDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       200 ~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +.+.+.+.|+|.||+|+++|++|...|       ++.+||+|+..+...+..++|+.+|++-
T Consensus        36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~   97 (180)
T 2q2g_A           36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIM   97 (180)
T ss_dssp             EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEE
T ss_pred             ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEE
Confidence            456677899999999999999997554       2456899999977666667777766664

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.01  E-value=0.00046  Score=53.55  Aligned_cols=61  Identities=10%  Similarity=0.081  Sum_probs=43.7

Q ss_pred             ccccCCCCCcc------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEE
Q 022195          148 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFL  211 (301)
Q Consensus       148 ~CigC~~C~g~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~  211 (301)
                      .-..|..|.+.      .+.+|..|.|.|...+.+  |++  +++.+|+.|.|          .|.+.+.+.+.+.|+|+
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~--~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~  102 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPF--VMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS  102 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTE--EEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCS
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCE--EEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEE
Confidence            34455555544      357899999999765443  553  46788999877          58888889988888886


Q ss_pred             e
Q 022195          212 I  212 (301)
Q Consensus       212 I  212 (301)
                      +
T Consensus       103 ~  103 (104)
T 2ctt_A          103 S  103 (104)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=96.76  E-value=7.4e-05  Score=63.34  Aligned_cols=51  Identities=10%  Similarity=0.019  Sum_probs=40.2

Q ss_pred             cccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195          204 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  254 (301)
Q Consensus       204 e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~  254 (301)
                      +.+.|+|.||+|+++|++|...|       ++.+||+|+..+...+..++++.+|++-
T Consensus        34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~   91 (170)
T 1c3g_A           34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIY   91 (170)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEE
T ss_pred             EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeE
Confidence            66799999999999999997554       2457899999977666666777766664

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=93.62  E-value=0.0097  Score=40.92  Aligned_cols=60  Identities=42%  Similarity=0.877  Sum_probs=36.9

Q ss_pred             cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeece
Q 022195          141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV  200 (301)
Q Consensus       141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~  200 (301)
                      .+.++.+.|++|+.|....|..+.+.+..|...+.......-.........||.++|...
T Consensus         3 ~~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~   62 (64)
T 1dax_A            3 KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE   62 (64)
T ss_dssp             CCEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred             EEEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence            356788899999999999997777765435444322001111122344567888887543

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=92.98  E-value=0.086  Score=34.99  Aligned_cols=56  Identities=29%  Similarity=0.636  Sum_probs=33.1

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH  198 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig  198 (301)
                      +.++.+.|++|+.|....|..+.+.+..|...+. .....-.........||.+++.
T Consensus         2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~   57 (59)
T 1dwl_A            2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAIS   57 (59)
T ss_dssp             EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEE
T ss_pred             eEEChhhCcChhHHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEE
Confidence            4567889999999999999767662233443331 0111111233344667877764

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=92.30  E-value=0.011  Score=42.94  Aligned_cols=59  Identities=25%  Similarity=0.496  Sum_probs=37.9

Q ss_pred             cccccccccccCCCCCccccceeeeeCCcceEEEEEeeC------C--ccccccccccCCCcceeece
Q 022195          141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG------D--SDQNIEVSVDSCPVNCIHWV  200 (301)
Q Consensus       141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g------~--~~~~iq~aC~~Cpg~Cig~~  200 (301)
                      .++++.++|++|+.|...+|..|.+.+. |...+..+..      +  .-.........||.++|...
T Consensus         3 ~v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~   69 (81)
T 1iqz_A            3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVA   69 (81)
T ss_dssp             EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEe
Confidence            3567889999999999999988877643 5544321100      0  01123345677899888654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=90.63  E-value=0.13  Score=37.11  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             cceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195          160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  194 (301)
Q Consensus       160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg  194 (301)
                      +.+|..|.|.|..... + +++  +++..|+.|.|
T Consensus        28 ~~~C~~C~G~G~~~~~-~-g~~--~~~~~C~~C~G   58 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMR-Q-GFF--AVQQTCPHCQG   58 (79)
T ss_dssp             CEECTTTTTSSEEEEE-E-TTE--EEEEECTTTTT
T ss_pred             CCCCCCCcCeEEEEEE-c-CCC--EEeeECcCCCC
Confidence            4689999999976553 3 433  46778999988

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=90.47  E-value=0.33  Score=43.07  Aligned_cols=34  Identities=18%  Similarity=0.061  Sum_probs=25.5

Q ss_pred             cEEEEEeCCC--CCCCcEEecCCCC-------CCCceehhhHH
Q 022195          206 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAAKA  239 (301)
Q Consensus       206 k~LeV~Ip~G--~~dG~~I~g~G~~-------~~~~vfv~~~~  239 (301)
                      ..++|.||+|  +..|+.+.+.|.+       ..||+||..++
T Consensus       189 ~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V  231 (248)
T 1nlt_A          189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTI  231 (248)
T ss_dssp             CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEE
T ss_pred             CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEE
Confidence            3689999999  9999998766532       23788887643

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=88.69  E-value=0.059  Score=36.70  Aligned_cols=57  Identities=28%  Similarity=0.575  Sum_probs=34.3

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCc-c--ccccccccCCCcceeec
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS-D--QNIEVSVDSCPVNCIHW  199 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~-~--~~iq~aC~~Cpg~Cig~  199 (301)
                      +.++.+.|++|+.|....|..+.+.. .|...++.+..+. .  .........||.++|..
T Consensus         4 ~~id~~~C~~C~~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~   63 (66)
T 1sj1_A            4 VSVDQDTCIGDAICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITI   63 (66)
T ss_dssp             EEECTTTCCCCCHHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             EEECcccCcCchHHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEE
Confidence            56788899999999999998776653 2443332211111 1  11223346788888754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.49  E-value=0.24  Score=49.76  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=37.4

Q ss_pred             CCccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhh
Q 022195           46 SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV   99 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~v   99 (301)
                      ....|||.+||++.+...  .+|+++||+|++..+++      .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence            334559999999777655  77999999999977655      3678888888775

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=87.49  E-value=0.11  Score=34.53  Aligned_cols=55  Identities=29%  Similarity=0.629  Sum_probs=31.9

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH  198 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig  198 (301)
                      +.++ +.|++|+.|....|..+.+.+. |...++.+....-.........||.++|.
T Consensus         2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~   56 (58)
T 1f2g_A            2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIV   56 (58)
T ss_dssp             CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred             cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEE
Confidence            4577 8999999999999987666443 43333221011111123344567877764

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=86.54  E-value=0.15  Score=33.85  Aligned_cols=26  Identities=35%  Similarity=0.834  Sum_probs=20.7

Q ss_pred             ccccccccccCCCCCccccceeeeeC
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDE  167 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~  167 (301)
                      +.++.+.|++|+.|....|..+.+.+
T Consensus         3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~   28 (60)
T 1rof_A            3 VRVDADACIGCGVCENLCPDVFQLGD   28 (60)
T ss_dssp             SEECTTTCCSCCSSTTTCTTTBCCCS
T ss_pred             EEEchhhCCCChHHHHhCcHHHeECC
Confidence            46778899999999999997665543

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=83.05  E-value=1.1  Score=34.72  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=24.4

Q ss_pred             EEEEEeCCCCCCCcEEecCCCC-----CCCceehhh
Q 022195          207 VLEFLIQPQPKKGYGVFGGGWE-----RPANVFMAA  237 (301)
Q Consensus       207 ~LeV~Ip~G~~dG~~I~g~G~~-----~~~~vfv~~  237 (301)
                      .++|.||+|+..|+++...|.|     ..||+||..
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~~~GDL~v~~   74 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVI   74 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEE
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCCCCCCcCEEEEE
Confidence            5799999999999999766643     346877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	8e-14
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	7e-13
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-12
d1iqza_	81	d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyt	7e-12
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-11
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-11
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-11
d1fxda_	58	d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T	1e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	7e-09
d1sj1a_	66	d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus	2e-08
d1vjwa_	59	d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [T	5e-06
d3c8ya3	83	d.58.1.5 (A:127-209) Fe-only hydrogenase, second d	0.003

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 62.9 bits (152), Expect = 8e-14
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 200
             +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW 
Sbjct: 3   KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62

Query: 201 DR 202
           D 
Sbjct: 63  DE 64

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (148), Expect = 7e-13
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYH--------PDIAGQKGHEHTLLLNE 95
             + KK++Y +LG    AN  ++K+ Y+KL   YH        P    ++  +  + +++
Sbjct: 11  EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70

Query: 96  AYKVLMRGDLRKDYDA 111
           A+K+L   + +K YD 
Sbjct: 71  AWKILGNEETKKKYDL 86

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 59.8 bits (144), Expect = 4e-12
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 46  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
            +     +LLG+   A G    +++AY K  K++HPD       E    +N  YK +  G
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--GGDEEKMKKMNTLYKKMEDG 62

Query: 104 DLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDE 146
                     G                  W      E LF  E
Sbjct: 63  VKYAHQP-DFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSE 104

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

 Score = 58.2 bits (140), Expect = 7e-12
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 139 PEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI--------EVSVD 190
           P+   VD+  CI C  C   A + +  DE  G A V +        +          + +
Sbjct: 1   PKYTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFE 59

Query: 191 SCPVNCIHWVDR 202
            CP + I   D 
Sbjct: 60  GCPTDSIKVADE 71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGH--EHTLLLNEAYKVLMRGDL 105
           K++YYE+LGVS  A  +EI++AY++L  KYHPD              + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 106 RKDYD 110
           R  YD
Sbjct: 62  RAAYD 66

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 50  NYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVL 100
           +Y+ L G+        Q +   ++ LQ++YHPD              + +  +N+A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 101 MRGDLRKDYDASI 113
               +R +Y  S+
Sbjct: 62  RHPLMRAEYLLSL 74

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 46  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103
           + K+   ELL +  +  G    +++AY++     HPD  G   H     LN  +      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTE 65

Query: 104 DLRKDYDA 111
                 + 
Sbjct: 66  VYNLRMNL 73

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

 Score = 53.9 bits (129), Expect = 1e-10
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCI 197
              + C+ C  CV    + F M+E    A V     D D  +E ++DSCP   I
Sbjct: 3   EVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDC-VEEAIDSCPAEAI 55

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 44  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHT---LLLNEAYKVL 100
           R S  K    ++  + +    E K+  R+L  K+HPD   +           L      L
Sbjct: 11  RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

Query: 101 MRGDLRKDYDASIGQMRF 118
            +            +  F
Sbjct: 71  EKQAFLDQNADRASRRTF 88

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-----IAGQKGHEHTLLLNEAYKVLMR 102
            +  ++ +G++     +++K+ YRK     HPD        Q      + LN+A+     
Sbjct: 32  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 103 GDLRKDY 109
              +  Y
Sbjct: 92  QGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 48  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDLR 106
            K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G  E    + EAY VL     R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 107 KDYD 110
           + +D
Sbjct: 62  EIFD 65

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--SVDSCPVNCIHWVD 201
           VD++ CIG   C     + F M++            D +       ++++CPV+ I   +
Sbjct: 6   VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Length = 59

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.0 bits (95), Expect = 5e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 199
           VD +ACIGC  C +   + F + +  G A+V     D     + + DSCP   I  
Sbjct: 5   VDADACIGCGVCENLCPDVFQLGD-DGKAKVLQPETDLPCAKD-AADSCPTGAISV 58

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 140 EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVS----------V 189
           ++L VD   C+ C  CV+               +       ++                +
Sbjct: 12  KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCI 71

Query: 190 DSCPVNCI 197
            +CPV  +
Sbjct: 72  IACPVAAL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.85
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.79
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.7
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.65
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.59
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	98.39
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	97.36
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	97.2
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.03
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	96.49
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	96.47
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	96.38
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	95.96
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	91.6

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.9e-22  Score=147.01  Aligned_cols=68  Identities=40%  Similarity=0.632  Sum_probs=62.1

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      ..|||+||||+++||.+|||+|||+|++++|||+++.+  ..+.|..|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            57999999999999999999999999999999998753  456899999999999999999999998643

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-21  Score=143.53  Aligned_cols=69  Identities=35%  Similarity=0.514  Sum_probs=63.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  116 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~  116 (301)
                      .+|||+||||+++||.+||++||+++++++|||+++.+ +.+.|+.|++||+||+||.+|..||+++...
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            46999999999999999999999999999999998764 5578999999999999999999999987654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=9.9e-21  Score=145.29  Aligned_cols=70  Identities=30%  Similarity=0.542  Sum_probs=62.3

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHhhhhccccccccccccc
Q 022195           45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  114 (301)
Q Consensus        45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~  114 (301)
                      .....|||+||||+++|+.+|||+||++|++++|||+++..        +.+.|+.|++||++|+||.+|..||..+.
T Consensus        12 ~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            34457999999999999999999999999999999998653        34579999999999999999999998754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.79  E-value=1.6e-20  Score=149.00  Aligned_cols=66  Identities=29%  Similarity=0.356  Sum_probs=60.2

Q ss_pred             ccCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccccc
Q 022195           48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  115 (301)
Q Consensus        48 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~  115 (301)
                      ..+||+||||+++|  +.++||+|||+||+++|||++++  .+.|++|++||+||+||.+|..||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~--~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh--HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            46899999999999  78899999999999999999975  46899999999999999999999987643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.70  E-value=2.1e-18  Score=127.82  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             CccCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccc
Q 022195           47 KKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        47 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      ...+||+||||++++  +.++||+|||++++++|||++++  .+.|++||+||++|+|+.+|..||..+
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~--~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC--HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            457899999999998  99999999999999999999865  478999999999999999999999864

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.6e-17  Score=122.15  Aligned_cols=65  Identities=25%  Similarity=0.517  Sum_probs=56.4

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhcccccccccccc
Q 022195           49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI  113 (301)
Q Consensus        49 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~  113 (301)
                      .|||+||||++++  +.+|||++|+++++++|||+....       +.+.|..|++||+||+||.+|..|+..+
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            4899999999964  589999999999999999997542       2357889999999999999999998654

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.6e-16  Score=122.33  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=56.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhcccccccc
Q 022195           48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY  109 (301)
Q Consensus        48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~Y  109 (301)
                      ..+.|++|||...++.++||+|||++++.+|||+++..     +.+.|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            45679999999999999999999999999999998754     345899999999999999999988

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.1e-16  Score=119.21  Aligned_cols=64  Identities=22%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccc
Q 022195           46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDAS  112 (301)
Q Consensus        46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~  112 (301)
                      ..-.++|+||||+.+||.+|||+|||+|+++||||++++.   +.+.|+.|++||++|++   +..||..
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~   79 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQN   79 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSS
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhcc
Confidence            3347899999999999999999999999999999999864   45689999999999986   4555544

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=98.39  E-value=1.4e-08  Score=70.95  Aligned_cols=62  Identities=42%  Similarity=0.876  Sum_probs=54.5

Q ss_pred             CcccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeecee
Q 022195          140 EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD  201 (301)
Q Consensus       140 ~difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~  201 (301)
                      ..+|||.++|+||+.|...+|..|.+.+..|..++..+........+.+.+.||++||++..
T Consensus         2 ~~~~VD~~~CigCg~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e   63 (64)
T d1fxra_           2 RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CEEEECTTTCCCCCHHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred             CeEEEchhhCccCCCccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence            46899999999999999999999999998899888777666666788999999999998754

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=97.36  E-value=9.2e-06  Score=54.99  Aligned_cols=56  Identities=29%  Similarity=0.608  Sum_probs=42.9

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeec
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  199 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~  199 (301)
                      +|++ +.|+||+.|...+|..|.+.+. |...++.+.......++.+.+.||+++|..
T Consensus         2 v~v~-e~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~c~~c~~~CP~~AIs~   57 (58)
T d1fxda_           2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             EEEC-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred             eeEC-ccCcChhhHHHHcChhheEcCC-CCEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence            4666 6899999999999999998877 444444444445556778899999999853

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=97.20  E-value=1.6e-05  Score=57.41  Aligned_cols=60  Identities=27%  Similarity=0.523  Sum_probs=45.2

Q ss_pred             cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCC--------ccccccccccCCCcceeecee
Q 022195          141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD--------SDQNIEVSVDSCPVNCIHWVD  201 (301)
Q Consensus       141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~--------~~~~iq~aC~~Cpg~Cig~~~  201 (301)
                      -++||.++|+||+.|...+|..|.+.+. |...+......        ....++.+...||++||....
T Consensus         3 ~v~VD~~~CigCg~C~~~cP~~f~~~~d-g~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d   70 (81)
T d1iqza_           3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVAD   70 (81)
T ss_dssp             EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEES
T ss_pred             EEEEeHHHCcCcChHhHhCchheeEcCC-CeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEe
Confidence            4678999999999999999999998865 77666543321        112466788999999996553

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00016  Score=51.19  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=37.6

Q ss_pred             ccCCCCCccc-----cceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195          150 IGCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  194 (301)
Q Consensus       150 igC~~C~g~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg  194 (301)
                      +.|..|.+++     +.+|..|.|.|.....++.+++.++++..|+.|.|
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G   52 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHG   52 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSS
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCcc
Confidence            4566666554     56899999999999999999988888899999988

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.00017  Score=48.49  Aligned_cols=56  Identities=30%  Similarity=0.541  Sum_probs=43.1

Q ss_pred             ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeec
Q 022195          142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  199 (301)
Q Consensus       142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~  199 (301)
                      +.+|.++|++|+.|...+|..|.+.+. |...+..+.. ...........||.+||..
T Consensus         3 v~iD~~~C~~Cg~C~~~cP~~~~~~~~-g~~~~~~~~~-~c~~c~~c~~~CP~~AI~i   58 (59)
T d1vjwa_           3 VRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPET-DLPCAKDAADSCPTGAISV   58 (59)
T ss_dssp             CEECTTTCCCCCHHHHHCTTTEEECTT-SSEEESCSBC-CCTHHHHHHHHCTTCCEEC
T ss_pred             EEEeHHHCCCCCCChHhCchheEEccc-eeeEEecChH-HCcCcCcccCccCcccEEe
Confidence            568899999999999999999988765 7777654433 2334566788899998854

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.47  E-value=0.00013  Score=50.03  Aligned_cols=59  Identities=27%  Similarity=0.512  Sum_probs=42.5

Q ss_pred             cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCc---cccccccccCCCcceeece
Q 022195          141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS---DQNIEVSVDSCPVNCIHWV  200 (301)
Q Consensus       141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~---~~~iq~aC~~Cpg~Cig~~  200 (301)
                      .+.+|.++|++|+.|...+|..|.+.+. |......+....   ....+.....||++||...
T Consensus         3 ki~vD~~~Ci~Cg~C~~~CP~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~   64 (66)
T d1sj1a_           3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIE   64 (66)
T ss_dssp             EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEEeHHHCCCcChhhhhCCceEEEccc-CceEeeccccCChHHHhhhCHhhccCCcccEEEE
Confidence            3668899999999999999999988866 555444333221   2234566788999999654

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0013  Score=46.68  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             cccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhH
Q 022195          204 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAK  238 (301)
Q Consensus       204 e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~  238 (301)
                      +.+.|+|.||||+++|++|...|       ++.+||+++..+
T Consensus        34 ~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~   75 (80)
T d1c3ga1          34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQ   75 (80)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEE
T ss_pred             ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEE
Confidence            45689999999999999997554       356789988653

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0037  Score=43.68  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             cccEEEEEeCCCCCCCcEEecCC------CCCCCceehhhH
Q 022195          204 ELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAK  238 (301)
Q Consensus       204 e~k~LeV~Ip~G~~dG~~I~g~G------~~~~~~vfv~~~  238 (301)
                      ..+.++|.||+|+++|++|...|      ++.+||+++..+
T Consensus        29 ~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i~   69 (74)
T d1nlta1          29 NRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVS   69 (74)
T ss_dssp             EEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEE
T ss_pred             cCccEEEEecccccCCeEEEecCCcCCCCCCCCCCEEEEEE
Confidence            45689999999999999997555      345789988764

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.043  Score=38.41  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=28.0

Q ss_pred             ccccCCCCCcc------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195          148 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  194 (301)
Q Consensus       148 ~CigC~~C~g~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg  194 (301)
                      +-..|..|.++      .+.+|..|.|.|..+  .+.+++  +++++|+.|.|
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~--~~~g~~--~~~~~C~~C~G   58 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ--MRQGFF--AVQQTCPHCQG   58 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEE--EEETTE--EEEEECTTTTT
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEE--Eecccc--eeeEECcccCc
Confidence            34455555543      356799999988643  344443  56678999988