Citrus Sinensis ID: 022198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Secondary Structure (PSIPRED)
cccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHccccHHHEEEHHHcccHHHHHHHHHcHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHcccHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHcc
Coil and Loop (DISEMBL)
MPAMNNILSKWVPVAERSRSLALVYSGMYlgsvtglafspflihrfgwpsvfysfgslGTVWFTVWLSkahsspaedpqlrpaeKKLIVSscaskepvktipwglilskppvWALIVSHFCHnwgtfilltwmptyynqVLHFNltesglfcvlpwLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIgflgpaffltqlshvdspAMAVLCMACsqgtdafsqsglysnhqdiaprySGVLLGLSNTAGVLAGVFGTAATGYilqhgswddvFKVSVGLYLVGTAVWNLFSTGEKVVD
Flexible Loop (DISEMBL)
mpamnnilskwvPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHsspaedpqlrpAEKKLIVSscaskepvktipwglilSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWnlfstgekvvd
Low Complexity Region (SEG)
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Disordered region (IsUnstruct)
******ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS*******************IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST******
Disordered Region (DISOPRED)
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP*********************GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV*
Disordered Region (DISEMBL)
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA**********RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Disordered Region (DISPRO)
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q9SDI4	529	Probable anion transporte	yes	no	1.0	0.568	0.890	1e-156
O82390	512	Sodium-dependent phosphat	no	no	1.0	0.587	0.860	1e-153
Q8GX78	541	Probable anion transporte	no	no	1.0	0.556	0.823	1e-148
Q652N5	591	Probable anion transporte	no	no	1.0	0.509	0.827	1e-146
Q7XJR2	512	Probable anion transporte	no	no	0.986	0.580	0.405	9e-60
Q66GI9	533	Probable anion transporte	no	no	0.993	0.560	0.394	2e-59
Q8W0H5	519	Probable anion transporte	no	no	0.993	0.576	0.377	2e-58
Q53WP9	535	Probable anion transporte	no	no	0.996	0.560	0.379	2e-54
Q53P54	428	Probable anion transporte	no	no	0.996	0.700	0.354	2e-53
Q2QWW7	439	Probable anion transporte	no	no	0.993	0.681	0.363	6e-53

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  549 bits (1415), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/301 (89%), Positives = 277/301 (92%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LIH FGWPSVFYSFGSLG 
Sbjct: 229 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGV 288

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
            WF+ W SKA+SSP EDP +   EKKLI S     EPVK IPWGLILSKPPVWALIVSHF
Sbjct: 289 FWFSTWASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMA SAN GGWIADTLVS+GLSV
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI PRY
Sbjct: 409 TTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRY 468

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           +GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV LYLVGT VWNLFSTGEK++
Sbjct: 469 AGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKII 528

Query: 301 D 301
           D
Sbjct: 529 D 529

Probable anion transporter.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/301 (86%), Positives = 275/301 (91%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 212 MPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 271

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VW T+WL+KA SSP EDP L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HF
Sbjct: 272 VWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHF 331

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYY+QVL FNL ESGL  V PW+TMA SAN GGWIADTLVS+G SV
Sbjct: 332 CHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSV 391

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQ+IGFLGPAFFLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 392 TNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 451

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGV GTAATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++
Sbjct: 452 SGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKII 511

Query: 301 D 301
           D
Sbjct: 512 D 512

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/301 (82%), Positives = 273/301 (90%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNN+LSKW+PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG+
Sbjct: 241 MPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGS 300

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           +WF +WL  A+SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHF
Sbjct: 301 IWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHF 360

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGL CVLPWLTMA  AN+GGWIADTLVS+GLS+
Sbjct: 361 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSI 420

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQSIGFLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY
Sbjct: 421 TNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 480

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           +GVLLGLSNTAGVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++
Sbjct: 481 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKIL 540

Query: 301 D 301
           D
Sbjct: 541 D 541

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/301 (82%), Positives = 271/301 (90%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LI RFGWPSVFY+FGSLG+
Sbjct: 291 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGS 350

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF +W  KAHSSP+EDP+L  AEK+ I+     KEPV +IPW LILSKPPVWALIVSHF
Sbjct: 351 VWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIVSHF 410

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGL CVLPWLTMA  AN+GGWIADTLV +G+S+
Sbjct: 411 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRGVSI 470

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQSIGFLGPA FLT LS V +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY
Sbjct: 471 TNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 530

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           +GVLLGLSNTAGVLAGVFGTAATGYILQ GSWD VF+V+V LY+VGT VWN+FSTGEKV+
Sbjct: 531 AGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVVLYIVGTVVWNVFSTGEKVL 590

Query: 301 D 301
           +
Sbjct: 591 E 591

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  230 bits (587), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 181/306 (59%), Gaps = 9/306 (2%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MP+M  +LS+W P+ ER+ ++ +  +G ++G+V GL  +P ++   G    F  F SLG 
Sbjct: 208 MPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGL 267

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVS------SCASKEPVKTIPWGLILSKPPVWA 114
           +W + W S   ++P + P +  +E +LI +      S  S +P  ++   L+LSK P WA
Sbjct: 268 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWA 325

Query: 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174
           +I ++  +NWG F+LL+WMP Y+  V + NL ++  F  LPW TMA S    G  +D L+
Sbjct: 326 IIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLI 385

Query: 175 SKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ 234
             G SVT+VRKIMQSIGF+GP   L  L+   SP+ A + M  +    +FSQ+G   N Q
Sbjct: 386 RTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQ 445

Query: 235 DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLF 293
           DIAP+Y+G L G+SN AG LA +  T  TGY +Q  GS+     V+  LY   T  W LF
Sbjct: 446 DIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLF 505

Query: 294 STGEKV 299
           +TGE+V
Sbjct: 506 ATGERV 511

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 184/307 (59%), Gaps = 8/307 (2%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           +P MNN++++W P  ERSR++ +  +G  LG+V GL  SP L+ + G    F  FG  G 
Sbjct: 221 LPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGF 280

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAE-----KKLIVSSCASKEPVKT--IPWGLILSKPPVW 113
           +W  VWLS   S+P   PQ+  +E     +K  +S+  +K    +   P+G +LSK P W
Sbjct: 281 LWLLVWLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTW 340

Query: 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173
           A+IV++  H+WG F++L+WMP Y+N V H NL ++  F  +PW  MAF+  + G+ +D L
Sbjct: 341 AVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLL 400

Query: 174 VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH 233
           + +G S+T  RKIMQSIGF+GP   L  L+    P +A   ++ + G  +FS  G   N 
Sbjct: 401 IRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINL 460

Query: 234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNL 292
           Q+IAP YSGVL G+  TAG LA + GT   G+ ++  GS+     ++  LYL+    +N+
Sbjct: 461 QEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFYNI 520

Query: 293 FSTGEKV 299
           ++TGE+V
Sbjct: 521 YATGERV 527

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 175/307 (57%), Gaps = 8/307 (2%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           +P+MNN++ +W P  ERS ++ +  +G  LG+  GL  SP ++ R G    F  FG  G 
Sbjct: 207 LPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGF 266

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAE-------KKLIVSSCASKEPVKTIPWGLILSKPPVW 113
           +W  VW+S    +P E+ Q+   E       +KL+ +    +   K  P+  +LSK P W
Sbjct: 267 LWVLVWISAISGTPGENAQISAHELDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTW 326

Query: 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173
           ALI ++  H+WG F++L+WMP Y+  + H NL E+  F  LPW+ MA    + G ++D L
Sbjct: 327 ALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRL 386

Query: 174 VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH 233
           +  G S+T  RKIMQ+IGF+GP   L  L+   SP +A   +  + G  +F  SG   N 
Sbjct: 387 IQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNL 446

Query: 234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNL 292
           Q+IAP+Y+GVL G+SNTAG  A + GT   G+ +   GS+     ++  LY   T  W++
Sbjct: 447 QEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDI 506

Query: 293 FSTGEKV 299
           F+TGE+V
Sbjct: 507 FATGERV 513

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 3/303 (0%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
           P M+  L KW P  ER+ ++ +   G +LG+V     +P ++   G    F  F SLG +
Sbjct: 233 PTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYL 292

Query: 62  WFTVWLSKAHSSPAEDPQLRPAEKKLIVS-SCASKEPVKTIP-WGLILSKPPVWALIVSH 119
           W +VWL    S P +   +  +E +LI++   ASK      P    ILSK  +WA+IV++
Sbjct: 293 WLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVAN 352

Query: 120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS 179
             +NWG F+LL+WMP Y+  V + NL ++  F  +PW  MA S  + G  AD L+  G S
Sbjct: 353 VVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFS 412

Query: 180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR 239
           V  VRKIMQSIGF+GP   L  L    +P++A + M  +    +FSQ+G + N QDIAP+
Sbjct: 413 VALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPK 472

Query: 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298
           Y+G L GL+N  G +A +  T  TGY +Q  GS+     ++  LY   T  +N ++TG+ 
Sbjct: 473 YAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDL 532

Query: 299 VVD 301
           + D
Sbjct: 533 IFD 535

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53P54|PHT46_ORYSJ Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 178/313 (56%), Gaps = 13/313 (4%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
           P+++ +L++WVP  ERSRS++L  SGMYLG+  G+   P L+   G  SVF     LG  
Sbjct: 116 PSIHTVLAQWVPPQERSRSVSLTTSGMYLGAACGMLLLPSLVKNMGPQSVFSVEAMLGVA 175

Query: 62  WFTVWLSKAHSSPAED-PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           W  +W   A   P  D P++   +K  + +          IPW  IL   P+WA++V++F
Sbjct: 176 WLLIWFKFASDPPRTDLPKVASKDKMKVQTGGIMAPRTVKIPWARILFSLPIWAIVVNNF 235

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG-LS 179
             ++  ++L+ W+PTY+   L  +L + G   +LP+L M   +N+GG +AD L+++  LS
Sbjct: 236 TFHYALYVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKILS 295

Query: 180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR 239
           VT  RK++ ++GF+  A  L  L    +P+ A+ C + S G  A  ++G   NH D+AP+
Sbjct: 296 VTKTRKLLNTVGFVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNHMDVAPK 355

Query: 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGTA 288
           ++G+++G+SNTAG LAG+ G   TG IL+             SW  VF V   L +  + 
Sbjct: 356 FAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFSSF 415

Query: 289 VWNLFSTGEKVVD 301
           ++ +FSTGEK+ +
Sbjct: 416 IFLIFSTGEKIFE 428

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  207 bits (528), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 182/319 (57%), Gaps = 20/319 (6%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
           PA++ +L++WVP  ERSRS++L  SGMYLG+  G+ F P L+   G  SVF+    LG  
Sbjct: 122 PAIHTVLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVA 181

Query: 62  WFTVWLSKAHSSPAED------PQLRPAEK-KLIVSSCASKEPVKTIPWGLILSKPPVWA 114
           W  +WL  +   P  D      P++   EK K       +   VK IPW  I+   PVWA
Sbjct: 182 WSVIWLKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVK-IPWRRIIFSLPVWA 240

Query: 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174
           ++V++F  ++  ++L+ W+PTY+   L  +L + G   +LP+  M   +N+GG +AD L+
Sbjct: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLI 300

Query: 175 SKG-LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH 233
           ++  LS+T  RK++ +IGF+  A  L  L    +P+  VLC + S G  A  ++G   NH
Sbjct: 301 TRRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNH 360

Query: 234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGL 282
            D+AP+++G+++G+SNTAG LAG+ G   TG IL+             +W  VF V   L
Sbjct: 361 MDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYL 420

Query: 283 YLVGTAVWNLFSTGEKVVD 301
            +  + ++ +FSTGEK+ +
Sbjct: 421 CIFSSIIFLIFSTGEKIFE 439

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
224104305	520	predicted protein [Populus trichocarpa]	1.0	0.578	0.930	1e-162
449467759	356	PREDICTED: probable anion transporter 1,	1.0	0.845	0.926	1e-161
224054558	431	predicted protein [Populus trichocarpa]	1.0	0.698	0.926	1e-161
449515105	528	PREDICTED: sodium-dependent phosphate tr	1.0	0.570	0.923	1e-160
255569283	530	Sodium-dependent phosphate transport pro	1.0	0.567	0.910	1e-160
356566171	395	PREDICTED: probable anion transporter 1,	1.0	0.762	0.910	1e-159
225434656	514	PREDICTED: sodium-dependent phosphate tr	1.0	0.585	0.913	1e-158
356539597	511	PREDICTED: sodium-dependent phosphate tr	1.0	0.589	0.903	1e-158
388500962	516	unknown [Medicago truncatula]	1.0	0.583	0.890	1e-158
358346124	516	Sodium-dependent phosphate transport pro	1.0	0.583	0.890	1e-158

>gi|224104305|ref|XP_002313389.1| predicted protein [Populus trichocarpa] gi|222849797|gb|EEE87344.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/301 (93%), Positives = 290/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLA VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 220 MPAMNNILSKWVPVSERSRSLAFVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 279

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF  WLSKAHSSP +DPQLRPAEKKLI ++  SKEPV++IPW LILSK PVWALIVSHF
Sbjct: 280 VWFAAWLSKAHSSPLDDPQLRPAEKKLIFANSFSKEPVESIPWRLILSKAPVWALIVSHF 339

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV
Sbjct: 340 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 399

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 400 TTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 459

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 460 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIL 519

Query: 301 D 301
           D
Sbjct: 520 D 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467759|ref|XP_004151590.1| PREDICTED: probable anion transporter 1, chloroplastic-like, partial [Cucumis sativus]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/301 (92%), Positives = 290/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG 
Sbjct: 56  MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGA 115

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF VWL+KAHSSP +DPQLRP EKKLI +S  SKEPVK+IPWG ILSKPPVWALIVSHF
Sbjct: 116 VWFAVWLNKAHSSPLDDPQLRPQEKKLIFASSVSKEPVKSIPWGTILSKPPVWALIVSHF 175

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYY+QVL FNLTESGL CVLPWLTMAFSANLGGWIADTLVS+GLSV
Sbjct: 176 CHNWGTFILLTWMPTYYHQVLKFNLTESGLLCVLPWLTMAFSANLGGWIADTLVSRGLSV 235

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 236 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 295

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 296 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIL 355

Query: 301 D 301
           D
Sbjct: 356 D 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054558|ref|XP_002298320.1| predicted protein [Populus trichocarpa] gi|222845578|gb|EEE83125.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/301 (92%), Positives = 290/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMN ILSKWVPV+ERSRSLALVYSGMYLGSVTGL FSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 131 MPAMNTILSKWVPVSERSRSLALVYSGMYLGSVTGLGFSPFLIHQFGWPSVFYSFGSLGT 190

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF  WLSKAHSSP +DPQLRP EKKLI ++ +SKEPVK+IPWGLILSK PVWALIVSHF
Sbjct: 191 VWFAAWLSKAHSSPLDDPQLRPEEKKLIFANSSSKEPVKSIPWGLILSKGPVWALIVSHF 250

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV
Sbjct: 251 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 310

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 311 TTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 370

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGVFGTA+TGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 371 SGVLLGLSNTAGVLAGVFGTASTGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIL 430

Query: 301 D 301
           D
Sbjct: 431 D 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515105|ref|XP_004164590.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Cucumis sativus]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/301 (92%), Positives = 290/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG 
Sbjct: 228 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGA 287

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF VWL+KAHSSP +DPQLRP EKKLI ++  SKEPVK+IPWG ILSKPPVWALIVSHF
Sbjct: 288 VWFAVWLNKAHSSPLDDPQLRPQEKKLIFANSVSKEPVKSIPWGTILSKPPVWALIVSHF 347

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYY+QVL FNLTESGL CVLPWLTMAFSANLGGWIADTLVS+GLSV
Sbjct: 348 CHNWGTFILLTWMPTYYHQVLKFNLTESGLLCVLPWLTMAFSANLGGWIADTLVSRGLSV 407

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 408 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 467

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 468 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIL 527

Query: 301 D 301
           D
Sbjct: 528 D 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569283|ref|XP_002525609.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] gi|223535045|gb|EEF36727.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/301 (91%), Positives = 289/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAM NILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 230 MPAMTNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 289

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           +WF VWL+KA+SSP +DPQLRP EK+LI+++ A KEPVK IPWGLILSKPPVWALIVSHF
Sbjct: 290 IWFAVWLNKAYSSPLDDPQLRPEEKQLIIANSACKEPVKVIPWGLILSKPPVWALIVSHF 349

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL F+LTESGL CVLPWLTMAFSANLGGWIADTLVSKG SV
Sbjct: 350 CHNWGTFILLTWMPTYYNQVLKFDLTESGLVCVLPWLTMAFSANLGGWIADTLVSKGYSV 409

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQ+IGFLGPAFFLTQLSH++SPAMAVLCM CSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 410 TTVRKIMQTIGFLGPAFFLTQLSHINSPAMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRY 469

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK+V
Sbjct: 470 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIV 529

Query: 301 D 301
           D
Sbjct: 530 D 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566171|ref|XP_003551308.1| PREDICTED: probable anion transporter 1, chloroplastic-like [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/301 (91%), Positives = 289/301 (96%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 95  MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 154

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF+VWLSKAHSSP EDP+LRP EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHF
Sbjct: 155 VWFSVWLSKAHSSPLEDPELRPEEKKLITTNCSSKEPVKTIPWRLILSKPPVWALIVSHF 214

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWL MA SAN+GGWIADTLVSKG+SV
Sbjct: 215 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLIMAISANVGGWIADTLVSKGVSV 274

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQ+IGFLGPAFFLTQLSHV+SP MAVLCM CSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 275 TRVRKIMQTIGFLGPAFFLTQLSHVNSPVMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRY 334

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SG+LLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV LYLVGT V+NLFSTGEKV+
Sbjct: 335 SGILLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTVVFNLFSTGEKVL 394

Query: 301 D 301
           +
Sbjct: 395 E 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434656|ref|XP_002279594.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera] gi|297745933|emb|CBI15989.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/301 (91%), Positives = 285/301 (94%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH FGWPSVFYSFGSLGT
Sbjct: 214 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHSFGWPSVFYSFGSLGT 273

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VW   WLSKA+SSP EDP+L P EKKLIVS+  +KEPVK IPW LILSKPPVWALI SHF
Sbjct: 274 VWLATWLSKAYSSPLEDPELLPKEKKLIVSNSVTKEPVKKIPWRLILSKPPVWALIGSHF 333

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV
Sbjct: 334 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 393

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           TTVRKIMQ+IGFLGPAFFLTQLSHV+SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 394 TTVRKIMQTIGFLGPAFFLTQLSHVNSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 453

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SGVLLGLSNTAGVLAGV GT ATGYILQHGSWDDVFKVSVGLYLVGT +WNLFSTGEK++
Sbjct: 454 SGVLLGLSNTAGVLAGVLGTGATGYILQHGSWDDVFKVSVGLYLVGTVIWNLFSTGEKIL 513

Query: 301 D 301
           D
Sbjct: 514 D 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539597|ref|XP_003538283.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Glycine max]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/301 (90%), Positives = 287/301 (95%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct: 211 MPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 270

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VW +VWLSKAHSSP EDP+LRP EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHF
Sbjct: 271 VWCSVWLSKAHSSPLEDPELRPEEKKLITANCSSKEPVKTIPWRLILSKPPVWALIVSHF 330

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPW  MA SAN+GGWIADTLVSKGLSV
Sbjct: 331 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWFIMAISANVGGWIADTLVSKGLSV 390

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQ+IGFLGPAFFLTQLSH +SP MAVLCM CSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 391 TRVRKIMQTIGFLGPAFFLTQLSHANSPVMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRY 450

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SG+LLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT V+NLFSTGEK++
Sbjct: 451 SGILLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVFNLFSTGEKIL 510

Query: 301 D 301
           +
Sbjct: 511 E 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500962|gb|AFK38547.1| unknown [Medicago truncatula]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/301 (89%), Positives = 286/301 (95%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGT
Sbjct: 216 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGT 275

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF +WLSKAHSSP +DP++RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHF
Sbjct: 276 VWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHF 335

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SV
Sbjct: 336 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSV 395

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQ++GFLGPAFFLTQLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 396 TRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRY 455

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SG+LLGLSNTAGVLAGV GTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 456 SGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKII 515

Query: 301 D 301
           D
Sbjct: 516 D 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346124|ref|XP_003637121.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355503056|gb|AES84259.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/301 (89%), Positives = 286/301 (95%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGT
Sbjct: 216 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGT 275

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           VWF +WLSKAHSSP +DP++RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHF
Sbjct: 276 VWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHF 335

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
           CHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SV
Sbjct: 336 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSV 395

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
           T VRKIMQ++GFLGPAFFLTQLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRY
Sbjct: 396 TRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRY 455

Query: 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
           SG+LLGLSNTAGVLAGV GTAATGYILQHGSWDDVFKVSVGLYLVGT VWNLFSTGEK++
Sbjct: 456 SGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKII 515

Query: 301 D 301
           D
Sbjct: 516 D 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	1.0	0.587	0.860	3.6e-144
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	1.0	0.556	0.823	7.2e-139
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.986	0.580	0.405	2.7e-59
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.973	0.566	0.387	1.6e-54
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.983	0.597	0.347	9.5e-50
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.983	0.597	0.354	9.5e-50
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.983	0.597	0.354	4.1e-49
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.983	0.597	0.344	1.1e-48
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.983	0.611	0.350	2.3e-48
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.980	0.603	0.354	2.9e-48

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
 Identities = 259/301 (86%), Positives = 275/301 (91%)

Query:     1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
             MPAMNNILSKWVPV ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT
Sbjct:   212 MPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGT 271

Query:    61 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
             VW T+WL+KA SSP EDP L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HF
Sbjct:   272 VWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHF 331

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
             CHNWGTFILLTWMPTYY+QVL FNL ESGL  V PW+TMA SAN GGWIADTLVS+G SV
Sbjct:   332 CHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSV 391

Query:   181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
             T VRKIMQ+IGFLGPAFFLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRY
Sbjct:   392 TNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 451

Query:   241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
             SGVLLGLSNTAGVLAGV GTAATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++
Sbjct:   452 SGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKII 511

Query:   301 D 301
             D
Sbjct:   512 D 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 248/301 (82%), Positives = 273/301 (90%)

Query:     1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
             MPAMNN+LSKW+PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG+
Sbjct:   241 MPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGS 300

Query:    61 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
             +WF +WL  A+SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHF
Sbjct:   301 IWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHF 360

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
             CHNWGTFILLTWMPTYYNQVL FNLTESGL CVLPWLTMA  AN+GGWIADTLVS+GLS+
Sbjct:   361 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSI 420

Query:   181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240
             T VRKIMQSIGFLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY
Sbjct:   421 TNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 480

Query:   241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300
             +GVLLGLSNTAGVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++
Sbjct:   481 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKIL 540

Query:   301 D 301
             D
Sbjct:   541 D 541

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 124/306 (40%), Positives = 181/306 (59%)

Query:     1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
             MP+M  +LS+W P+ ER+ ++ +  +G ++G+V GL  +P ++   G    F  F SLG 
Sbjct:   208 MPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGL 267

Query:    61 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVS------SCASKEPVKTIPWGLILSKPPVWA 114
             +W + W S   ++P + P +  +E +LI +      S  S +P  ++   L+LSK P WA
Sbjct:   268 LWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWA 325

Query:   115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174
             +I ++  +NWG F+LL+WMP Y+  V + NL ++  F  LPW TMA S    G  +D L+
Sbjct:   326 IIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLI 385

Query:   175 SKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ 234
               G SVT+VRKIMQSIGF+GP   L  L+   SP+ A + M  +    +FSQ+G   N Q
Sbjct:   386 RTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQ 445

Query:   235 DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF 293
             DIAP+Y+G L G+SN AG LA +  T  TGY +Q  GS+     V+  LY   T  W LF
Sbjct:   446 DIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLF 505

Query:   294 STGEKV 299
             +TGE+V
Sbjct:   506 ATGERV 511

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 117/302 (38%), Positives = 172/302 (56%)

Query:     3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 62
             A  +++++ +PV ERSR++  V+ G+ LGSV GL  +P +I  F W SVFY FG LG  W
Sbjct:   209 AATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGW 268

Query:    63 FT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
             F    +L++   S  +  ++  + K    +       +K IPW      P VWA+I +HF
Sbjct:   269 FVGFQFLNEEEVS-YKGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHF 327

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
             C +WG +  L+W+PTY+++ L  NLTE+    +LP L      +L    AD L++ G+  
Sbjct:   328 CGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDT 387

Query:   181 TTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 237
             TTVRKI Q+I F+ PA  +T LS VD    P   V  +       +F+ SGLY  HQDI+
Sbjct:   388 TTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446

Query:   238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-SWD-DVFKVSVGLYLVGTAVWNLFST 295
             P Y+ +LLG++NT G + G+ G A TG++L    SW   +F  S+  YL GT VW  F++
Sbjct:   447 PEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFAS 506

Query:   296 GE 297
              E
Sbjct:   507 SE 508

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 105/302 (34%), Positives = 161/302 (53%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  + +   W  VFY FG +G +
Sbjct:   180 PAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYMNWTYVFYFFGLVGII 239

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHF 120
             WF +W+     +P     + P EK+ I+SS  ++    K++PW  +L   P+WA++V+HF
Sbjct:   240 WFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKSVPWIPMLKSLPLWAIVVAHF 299

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK-GLS 179
              +NW  + LLT +PTY  +VL FN+ E+G    +P+L       L G  AD L ++   S
Sbjct:   300 SYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLCMILSGQAADNLRARWNFS 359

Query:   180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
                VR++   IG +GPA FL     +    ++AV  +  S     F  SG   NH DIAP
Sbjct:   360 TLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAP 419

Query:   239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFST 295
              Y+G+LLG++NT   + G+ G      +      G W  VF ++  + + G   + LF+ 
Sbjct:   420 SYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQTVFCIAAAINVFGAIFFTLFAK 479

Query:   296 GE 297
             GE
Sbjct:   480 GE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/302 (35%), Positives = 162/302 (53%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  + +   W  VFY FG++G  
Sbjct:   180 PAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIF 239

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHF 120
             WF +W+     +P +  ++   EK+ I+SS  ++    K++PW  IL   P+WA++V+HF
Sbjct:   240 WFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQKSVPWVPILKSLPLWAIVVAHF 299

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK-GLS 179
              +NW  + LLT +PTY  ++L FN+ E+G    LP+L       L G  AD L +K   S
Sbjct:   300 SYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFS 359

Query:   180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
                VR+I   IG +GPA FL     +    ++AV  +  S     F  SG   NH DIAP
Sbjct:   360 TLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAP 419

Query:   239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFST 295
              Y+G+LLG++NT   + G+ G      +      G W  VF ++  + + G   + LF+ 
Sbjct:   420 SYAGILLGITNTFATIPGMVGPVIAKSLTPDNTVGEWQTVFYIAAAINVFGAIFFTLFAK 479

Query:   296 GE 297
             GE
Sbjct:   480 GE 481

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 107/302 (35%), Positives = 159/302 (52%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+ + S W P  ERS+ L + Y+G  LG+V  L  S  + +   W  VFY FG +G V
Sbjct:   180 PAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICYYMNWTYVFYLFGIVGIV 239

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHF 120
             WF +W+     +P     +   EK+ IVSS  ++    K +PWG IL   P+WA++V+HF
Sbjct:   240 WFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKVVPWGSILKSLPLWAIVVAHF 299

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLS 179
              +NW  + LLT +PTY  ++L FN+ E+G    LP+        L G  AD L V    S
Sbjct:   300 SYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLCMILCGQAADYLRVKWNFS 359

Query:   180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
               +VR+I   +G +GPA FL     +    ++AV  +  S     F+ SG   NH DIAP
Sbjct:   360 TISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFASSGFSINHLDIAP 419

Query:   239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDVFKVSVGLYLVGTAVWNLFST 295
              Y+G+LLG++NT   + G+ G      +    +   W  VF ++  + + G   + LF+ 
Sbjct:   420 SYAGILLGITNTFATIPGMTGPIIAKSLTPDNTIREWQTVFCIAAAINVFGAIFFTLFAK 479

Query:   296 GE 297
             GE
Sbjct:   480 GE 481

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 104/302 (34%), Positives = 161/302 (53%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+ + S W P  ERS+ L++ Y+G  LG+V  L  S  +     W  VFY FG +G +
Sbjct:   180 PAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICFYMNWTYVFYLFGIVGII 239

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHF 120
             WF +W+     +P     +   EK+ I+SS  ++    K++PW  +L   P+WA++V+HF
Sbjct:   240 WFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKSVPWIPMLKSLPLWAIVVAHF 299

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK-GLS 179
              +NW  + LLT +PTY  ++L FN+ E+GL   LP+        L G  AD L +K   S
Sbjct:   300 SYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCWLCMILSGQAADNLRAKWNFS 359

Query:   180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
                VR++   IG +GPA FL     +    ++AV+ +  S     F  SG   NH DIAP
Sbjct:   360 TICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTISTTLGGFCSSGFSINHLDIAP 419

Query:   239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDVFKVSVGLYLVGTAVWNLFST 295
              Y+G+LLG++NT   + G+ G      +    +   W  VF ++  + + G   ++LF+ 
Sbjct:   420 SYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQTVFYIAAAINVFGAIFFSLFAK 479

Query:   296 GE 297
             GE
Sbjct:   480 GE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 106/302 (35%), Positives = 158/302 (52%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+++ S W P  ERS+ L++ Y+G  LG+V  L  S  + +   W  VFY FG+LG +
Sbjct:   169 PAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLICYYMNWVYVFYIFGALGVL 228

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKTIPWGLILSKPPVWALIVSHF 120
             WF  W+      P     +   E++ I+SS   +    K++PW  IL   P+WA++V+HF
Sbjct:   229 WFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKSVPWRPILESLPLWAIVVAHF 288

Query:   121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK-GLS 179
              +NW  + LLT +PTY  ++L F+  E+G    LP+        L G IAD L  K   S
Sbjct:   289 SYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCWLCIILSGQIADHLREKQNFS 348

Query:   180 VTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
                VRK    IG +GPA FL     +  +  +AV  +  S     F  SG   NH DIAP
Sbjct:   349 TVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTISTTLGGFCTSGYSINHLDIAP 408

Query:   239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFST 295
              Y+G+LLG++N+   + G+ G      +  +   G W  VF ++  + L G   + LF++
Sbjct:   409 SYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEWQTVFYIAASINLFGAIFFALFAS 468

Query:   296 GE 297
             GE
Sbjct:   469 GE 470

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 107/302 (35%), Positives = 162/302 (53%)

Query:     2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
             PAM+ + + W P  ERSR L + Y+G  LG+V  L  S  +     W  VFY FG++G +
Sbjct:   175 PAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLSGQICFYLDWTYVFYIFGAVGLL 234

Query:    62 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-EPVKT-IPWGLILSKPPVWALIVSH 119
             WF +W+    +SP+   ++  AEK  I+SS  ++  P +  IPW  I    P+WA++V+H
Sbjct:   235 WFFLWICFVSNSPSSHKRITEAEKTYIMSSLKNELSPTQDYIPWTSIFKSMPLWAIVVAH 294

Query:   120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS 179
             F +NW  + LLT +PTY N VL F++ ++G+   LP+L     A LGG +AD L  + L 
Sbjct:   295 FSYNWTFYTLLTLLPTYMNDVLGFSIQQNGMLSALPYLGCWLLALLGGQLADLLRERFLF 354

Query:   180 VTT-VRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 237
              T  VRK    +G  GPA FL    +   +  +AV  +  S      S SG   NH DIA
Sbjct:   355 RTVIVRKAFTVVGMAGPAVFLVAAGYTGCNYILAVAFLTISSSLGGISASGFNINHLDIA 414

Query:   238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS---WDDVFKVSVGLYLVGTAVWNLFS 294
             P Y+G+LLG++N+   + G+ G      + +  +   W  VF +S  + + G   + +F 
Sbjct:   415 PSYAGILLGITNSFATIPGMVGPVIARSLTKSNTIPEWQIVFYISAAINIFGAVFFTIFG 474

Query:   295 TG 296
              G
Sbjct:   475 KG 476

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDI4	PHT41_ORYSJ	No assigned EC number	0.8903	1.0	0.5689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-48
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-26
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-23
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-18
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-09
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-05
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-05
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  167 bits (425), Expect = 2e-48
 Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 8/304 (2%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFGWPSVFYSFGSLGT 60
           PA + I+ KW P  ERSR L +  SG  LG+   L  S +L     GWP +FY FG +G 
Sbjct: 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGC 209

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV-KTIPWGLILSKPPVWALIVS 118
            W  +W       P+  P +   EKK I SS    K    +++P   I    PVWA+  +
Sbjct: 210 AWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFA 269

Query: 119 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG- 177
            F H W   IL T++PT+ + VL  +  E+GL   LP+L     +   G++AD L S   
Sbjct: 270 IFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT 329

Query: 178 LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDI 236
           LS+T  RKI   IG LGP  F   L ++ +     + +   +    +   +G+  N  D+
Sbjct: 330 LSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389

Query: 237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV---GLYLVGTAVWNLF 293
           APR+ G + G++   G + G+  +   G IL   S +    V +    + ++    + +F
Sbjct: 390 APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449

Query: 294 STGE 297
            + E
Sbjct: 450 GSAE 453

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  107 bits (268), Expect = 2e-26
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 10/294 (3%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 61
           P +  I++ W P +ER+ ++++  S   LG + G     +++  F W   F   G LG +
Sbjct: 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160

Query: 62  WFTVWLSKAHSSPAEDPQLRPAEKKLIV----SSCASKEPVKTIPWGL--ILSKPPVWAL 115
           W  +WL      P +   L   EK ++V    +    K P     + +  +L    VW L
Sbjct: 161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGL 220

Query: 116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS 175
            +  F  N G    LTW PTY  Q    ++ E+G    LP +       LGG ++D L+ 
Sbjct: 221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR 280

Query: 176 KGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 235
           +G S+    +    I  L  +  +   ++V+ P  A+  +A          +  ++   D
Sbjct: 281 RGKSL-VFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAG-AIGWALISD 338

Query: 236 IAPRYS-GVLLGLSNTAGVLAGVFGTAATGYIL-QHGSWDDVFKVSVGLYLVGT 287
            AP    G+  GL N+ G L G+ G    G I    GS+     V   L L+G 
Sbjct: 339 NAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 67/261 (25%), Positives = 105/261 (40%), Gaps = 18/261 (6%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
            PA   +++ W P  ER R+L L+ +G  LG+  G      L   FGW + F     L  
Sbjct: 103 FPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILAL 162

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           +   +        P E  + +PAE+           P   +P   +L + PV  L+++  
Sbjct: 163 LAAVLAALLLPRPPPESKRPKPAEEA----------PAPLVPAWKLLLRDPVLWLLLALL 212

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
              +  F LLT++P  Y +VL  +   +GL   L  L  A    L G ++D L  +    
Sbjct: 213 LFGFAFFALLTYLPL-YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR---- 267

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R 239
              R ++  +  +  A  L  LS  +S    ++ +             L +   D+AP  
Sbjct: 268 --RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKE 325

Query: 240 YSGVLLGLSNTAGVLAGVFGT 260
             G   GL NTAG L G  G 
Sbjct: 326 ERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 71/294 (24%), Positives = 112/294 (38%), Gaps = 48/294 (16%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
            PA   ++++W P  ER R+L L  +G  LG++ G      L    GW  +F     LG 
Sbjct: 105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120
           +   + L                                            +  L ++ F
Sbjct: 165 LLALLLL---------------------------------------FLLRLLLLLALAFF 185

Query: 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180
             ++G + LLT++P Y  +VL  +  E+GL   L  L     A LGG ++D L       
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR----- 240

Query: 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R 239
              R+++  IG L  A  L  L+   S A+ ++ +        F+   L +   ++AP  
Sbjct: 241 ---RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPE 297

Query: 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293
             G   GL NT G L G  G    G +L  G +  VF +   L L+   +  L 
Sbjct: 298 ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 35/289 (12%)

Query: 1   MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           MP +N ++S++ P   R  ++ L++ G  +G+  G   + +LI  FGW S+FY  G +  
Sbjct: 123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAP 181

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKL-IVSSCA---------------SKEPVKTIPWG 104
           +   + L +      +    +  E    IV++ A               + +  K   + 
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFK 241

Query: 105 LILSKPPVWA---LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161
            +           L + +F    G + L  W+P    + L F+L+ +     L       
Sbjct: 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVI 300

Query: 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGT 221
            + + GW+AD L           ++   +  LG  F +   S + SP + +L  A +   
Sbjct: 301 GSIIFGWLADRL---------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFF 351

Query: 222 DAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATGYIL 267
               QSGLY+      P   R +GV   +    G L  + G    GY+L
Sbjct: 352 VNGGQSGLYALMALFYPTAIRATGVGWAIG--IGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 50/285 (17%), Positives = 95/285 (33%), Gaps = 17/285 (5%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGS--VTGLAFSPFLIHRFGWPSVFYSFGSLG 59
           P     ++KW   +ER   ++       +G   +  L         + W  VF   G + 
Sbjct: 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIA 160

Query: 60  TVWFTVWLSKAHSSPAEDPQLRPAEKKLI--VSSCASKEPVKTIPWGL----ILSKPPVW 113
            +   +       SP +   L PAE+         A K+  +     +    +L    +W
Sbjct: 161 IIVSLICFLLLRDSP-QSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLW 219

Query: 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173
            + + +         +L W P Y  Q   F+  ++     L  L       L GW++D L
Sbjct: 220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL 279

Query: 174 V-SKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSN 232
              +   +      +  +  L   ++L   +   +P M ++C+          Q  +   
Sbjct: 280 FNGRRGPLAVFFMALIIVSLLV--YWLNPAA---NPLMDLICLFALGFLVYGPQMLIGVI 334

Query: 233 HQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 276
             ++AP + +G   G       L G+      GY+     W   F
Sbjct: 335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 27/283 (9%)

Query: 12  VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 71
           VP  +R R+LALV++G+ L +V G+    FL   FGW + F +   L  +     L    
Sbjct: 130 VPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALL---ALLLLWK 186

Query: 72  SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 131
             P  +           +                +L +P V   +++ F    G F L T
Sbjct: 187 LLPPSEISGSLPGPLRTLLR--------------LLRRPGVLLGLLATFLFMTGHFALYT 232

Query: 132 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 191
           ++  +   V  F+++   L  +   +       LGG +AD    + L           + 
Sbjct: 233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAAL-------LL 285

Query: 192 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTA 251
                  LT      SPA+A+  +       + +  GL +    +AP  + +   L+  A
Sbjct: 286 LALALLALTFTGA--SPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343

Query: 252 GVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS 294
             L    G A  G +L    +     V     L+   +  L S
Sbjct: 344 FNLGIALGAALGGLVLDALGYAATGWVG-AALLLLALLLALLS 385

Length = 394

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 65/288 (22%), Positives = 108/288 (37%), Gaps = 25/288 (8%)

Query: 3   AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 62
            M N  S + P  ++  +L +  +G    +V  L  +P +   FG+ +     G    V 
Sbjct: 125 GMPNA-SFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIYV-VA 181

Query: 63  FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 122
             +    A     + P+ R            S +P        + S    W L + +F  
Sbjct: 182 LAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLLYFA- 229

Query: 123 NWGTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT 181
            +G F+  + ++P Y       +   +GL   L  L  A +  LGGW++D +   G  VT
Sbjct: 230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRVT 287

Query: 182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ---DIAP 238
               +  ++     + FLT   H  S  + V           F+  G  S  +    I P
Sbjct: 288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL---ALFVFAGLGNGSVFKMIPVIFP 344

Query: 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLV 285
           + +G + G+    G L G F   A G  L   GS+   F + +  YLV
Sbjct: 345 KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV 392

Length = 417

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 62/325 (19%), Positives = 100/325 (30%), Gaps = 44/325 (13%)

Query: 2   PAMNNILSKWVPVAERSRSLALV-----YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG 56
           P     ++ W    ER    ++        G     V  LAF        GW + FY  G
Sbjct: 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF---FAFHGGWRAAFYFPG 192

Query: 57  SLGTVWFTVWLSKAHSSPAEDPQLRPAEK---KLIVSSCASKE----PVKTIPWGLILSK 109
            +  +   + L        +   L P E+     +      KE        I    +L  
Sbjct: 193 IIAII-VALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKN 251

Query: 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF------SA 163
             +W L +++       + +  W P Y ++V  F+L ++       W    F        
Sbjct: 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN------WAISLFEVAGLPGT 305

Query: 164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDSPAMAVLCMACSQGT 221
            L GW++D  + KG      R  M  I  L     L    L+   S  +  + +    G 
Sbjct: 306 LLAGWLSD-KLFKGR-----RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII-GF 358

Query: 222 DAFSQ---SGLYSNHQDIAPRYS-GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVF 276
             +      GL +   +  P+ + G   G       L G        GYI     WD  F
Sbjct: 359 LIYGPQMLIGLAAA--EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGF 416

Query: 277 KVSVGLYLVGTAVWNLFSTGEKVVD 301
            V     L+   +       E+   
Sbjct: 417 IVLSIAALLAILLLLPVWNAEERKI 441

Length = 448

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 10/180 (5%)

Query: 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174
           L ++ F    G  +L   +P Y  + L  + TE GL      L  A +  L G ++D   
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF- 59

Query: 175 SKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ 234
                    R+ +  IG L  A  L  L    S  + ++                 +   
Sbjct: 60  --------GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIA 111

Query: 235 DIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293
           D  P    G  LGL +    L    G    G +     W   F +   L L+   +  L 
Sbjct: 112 DWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG2532	466	consensus Permease of the major facilitator superf	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
PRK09952	438	shikimate transporter; Provisional	99.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK11010	491	ampG muropeptide transporter; Validated	99.91
PRK03699	394	putative transporter; Provisional	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
PRK15011	393	sugar efflux transporter B; Provisional	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK15075	434	citrate-proton symporter; Provisional	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.9
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.89
PRK10489	417	enterobactin exporter EntS; Provisional	99.89
KOG2533	495	consensus Permease of the major facilitator superf	99.89
PRK12307	426	putative sialic acid transporter; Provisional	99.88
PRK11902	402	ampG muropeptide transporter; Reviewed	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
TIGR00891	405	2A0112 putative sialic acid transporter.	99.88
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.87
PRK10504	471	putative transporter; Provisional	99.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.87
PRK09874	408	drug efflux system protein MdtG; Provisional	99.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.86
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.86
PRK05122	399	major facilitator superfamily transporter; Provisi	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.86
PRK12382	392	putative transporter; Provisional	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.85
PRK03893	496	putative sialic acid transporter; Provisional	99.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.85
PRK11043	401	putative transporter; Provisional	99.85
TIGR00895	398	2A0115 benzoate transport.	99.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.85
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.84
PRK09528	420	lacY galactoside permease; Reviewed	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PRK10133	438	L-fucose transporter; Provisional	99.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.83
TIGR00898	505	2A0119 cation transport protein.	99.82
PRK03633	381	putative MFS family transporter protein; Provision	99.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.81
PRK10054	395	putative transporter; Provisional	99.81
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.79
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.77
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.7
TIGR00805	633	oat sodium-independent organic anion transporter.	99.7
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.67
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.66
KOG0569	485	consensus Permease of the major facilitator superf	99.63
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.61
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.59
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.59
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.54
PRK09669	444	putative symporter YagG; Provisional	99.54
PF13347	428	MFS_2: MFS/sugar transport protein	99.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.51
PRK10054	395	putative transporter; Provisional	99.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.48
PRK09848	448	glucuronide transporter; Provisional	99.47
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.43
PRK09528	420	lacY galactoside permease; Reviewed	99.41
PRK11462	460	putative transporter; Provisional	99.41
PRK10429	473	melibiose:sodium symporter; Provisional	99.39
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.39
PRK11663	434	regulatory protein UhpC; Provisional	99.38
PRK10504	471	putative transporter; Provisional	99.36
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.36
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.34
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.34
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.34
KOG2615	451	consensus Permease of the major facilitator superf	99.34
KOG2563	480	consensus Permease of the major facilitator superf	99.33
KOG0254	513	consensus Predicted transporter (major facilitator	99.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.33
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.31
PRK10489	417	enterobactin exporter EntS; Provisional	99.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.29
PRK05122	399	major facilitator superfamily transporter; Provisi	99.28
PRK11043	401	putative transporter; Provisional	99.28
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.27
PLN00028	476	nitrate transmembrane transporter; Provisional	99.26
PRK15011	393	sugar efflux transporter B; Provisional	99.26
PRK09874	408	drug efflux system protein MdtG; Provisional	99.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.26
PRK12382	392	putative transporter; Provisional	99.25
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.25
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.24
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.23
PRK03699	394	putative transporter; Provisional	99.23
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.23
COG2211	467	MelB Na+/melibiose symporter and related transport	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.2
TIGR00900	365	2A0121 H+ Antiporter protein.	99.2
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.2
TIGR00891	405	2A0112 putative sialic acid transporter.	99.2
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.19
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.19
PRK03545	390	putative arabinose transporter; Provisional	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.16
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.16
TIGR00895	398	2A0115 benzoate transport.	99.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.16
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.15
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.15
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.14
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.11
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.11
PRK03633	381	putative MFS family transporter protein; Provision	99.11
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.09
PRK09705	393	cynX putative cyanate transporter; Provisional	99.09
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.09
TIGR00893	399	2A0114 d-galactonate transporter.	99.09
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.09
PTZ00207	591	hypothetical protein; Provisional	99.08
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.06
PRK12307	426	putative sialic acid transporter; Provisional	99.06
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.06
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.05
PRK03893	496	putative sialic acid transporter; Provisional	99.04
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.04
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.98
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.98
PRK11902	402	ampG muropeptide transporter; Reviewed	98.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.96
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.94
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.93
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.92
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.89
PRK11010	491	ampG muropeptide transporter; Validated	98.88
KOG3626	735	consensus Organic anion transporter [Secondary met	98.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.84
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.83
PRK10133	438	L-fucose transporter; Provisional	98.81
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.81
TIGR00901	356	2A0125 AmpG-related permease.	98.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.75
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.75
PTZ00207	591	hypothetical protein; Provisional	98.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.72
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.68
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.66
PRK10642	490	proline/glycine betaine transporter; Provisional	98.63
PRK09952	438	shikimate transporter; Provisional	98.62
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.59
PRK15075	434	citrate-proton symporter; Provisional	98.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
TIGR00898	505	2A0119 cation transport protein.	98.5
PRK09669	444	putative symporter YagG; Provisional	98.48
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.48
TIGR00805	633	oat sodium-independent organic anion transporter.	98.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.46
KOG2532	466	consensus Permease of the major facilitator superf	98.41
PRK10429	473	melibiose:sodium symporter; Provisional	98.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.33
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.31
PF13347	428	MFS_2: MFS/sugar transport protein	98.29
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.27
PRK11462	460	putative transporter; Provisional	98.18
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.16
KOG2615	451	consensus Permease of the major facilitator superf	98.15
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.07
PRK09848	448	glucuronide transporter; Provisional	98.03
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.02
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.93
KOG0569	485	consensus Permease of the major facilitator superf	97.91
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.9
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.71
COG2211	467	MelB Na+/melibiose symporter and related transport	97.63
KOG0254	513	consensus Predicted transporter (major facilitator	97.38
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.36
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.24
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.18
KOG3810	433	consensus Micronutrient transporters (folate trans	97.16
KOG2533	495	consensus Permease of the major facilitator superf	97.16
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.11
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.1
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.87
KOG2563	480	consensus Permease of the major facilitator superf	96.61
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.58
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.51
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.48
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.38
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.36
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.02
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.02
PRK03612	521	spermidine synthase; Provisional	96.01
KOG3762	618	consensus Predicted transporter [General function	95.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.78
COG0477	338	ProP Permeases of the major facilitator superfamil	95.59
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.1
COG3202	509	ATP/ADP translocase [Energy production and convers	95.06
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.95
KOG3762	618	consensus Predicted transporter [General function	94.73
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.18
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.67
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.83
COG0477	338	ProP Permeases of the major facilitator superfamil	87.56
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	87.37
KOG0637	498	consensus Sucrose transporter and related proteins	87.31
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	86.93
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	86.75
KOG3098	461	consensus Uncharacterized conserved protein [Funct	84.03
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	82.41
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.78
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	81.17

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-37  Score=285.85  Aligned_cols=298  Identities=38%  Similarity=0.759  Sum_probs=258.8

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      +|++..+.++|+|++||++..++..++..+|.+++.++++++.+. +|||++|++.|.+++++.++|.....|+|++++.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            488899999999999999999999999999999999999999998 9999999999999999988888888899999999


Q ss_pred             CCHHHHHHHHhccCCCCCC--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198           80 LRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL  157 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i  157 (301)
                      .+++|++.+.+.+.+++..  .+.||+++++++.+|..++..++.+++.+.+.+|+|+|+++.+|+|..+.|++.+++.+
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            9999998887654433222  36799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC--ChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198          158 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       158 ~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      .+.+..+++|+++||.-+|..+....||.+..+.+.+.++++.......  .....+.++.+..+...++.++.+...++
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~  385 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD  385 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence            9999999999999999776666777788888888887776665544432  33345555555555555666666666666


Q ss_pred             cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198          236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTGEK  298 (301)
Q Consensus       236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  298 (301)
                      ..|++.+...|+.|..+.+.+.++|.++|.+...   .+|+.+|.+.+++++++.+++..+.++|+
T Consensus       386 ~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~  451 (466)
T KOG2532|consen  386 IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP  451 (466)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence            6899999999999999999999999999999942   57999999999999999999999877765

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.6e-32  Score=238.52  Aligned_cols=285  Identities=18%  Similarity=0.230  Sum_probs=203.7

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH--HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~--~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      |+|.+++++|||++|||+..|+++++.++|..+.+++.  +.+..+++||..|+.-|++.+++.++.+...+|+|++..-
T Consensus       136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL  215 (448)
T COG2271         136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL  215 (448)
T ss_pred             cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence            88999999999999999999999999999999999998  8888999999999999999888766666677899976421


Q ss_pred             CCHHHHH--HHHh-ccCCCCC-C--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198           80 LRPAEKK--LIVS-SCASKEP-V--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV  153 (301)
Q Consensus        80 ~~~~~~~--~~~~-~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~  153 (301)
                      -+.+|.+  .... +++++++ .  ++.-++-+++||..|.+.+.+.+.....|++..|.|.|+.|++|+|..++.....
T Consensus       216 P~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~  295 (448)
T COG2271         216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAIS  295 (448)
T ss_pred             CCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHH
Confidence            1111111  0000 1111111 0  1112455789999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhhhcchhh
Q 022198          154 LPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYS  231 (301)
Q Consensus       154 ~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
                      +..+++..|++++||+|||+.+.+      |..+..+..+...+++.....  ..+..+...++.+ .|+..+.--++..
T Consensus       296 lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~-iGf~IyGPqmLiG  368 (448)
T COG2271         296 LFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFI-IGFLIYGPQMLIG  368 (448)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHHHHhhHHHHHH
Confidence            999999999999999999996321      222222333333333322222  2233333333222 2222221112222


Q ss_pred             -hhhccCCC-chHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          232 -NHQDIAPR-YSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       232 -~~~~~~p~-~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                       ...|..|+ ..|++.|+.+.++++ |.+.+....|++.|+.||...|.+..+..+++.+.+..+
T Consensus       369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence             23466675 679999999999999 888888999999999999999988777666665544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=3.3e-30  Score=240.85  Aligned_cols=298  Identities=31%  Similarity=0.563  Sum_probs=216.4

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      .|.+.++++||+|+++|+++.++.+.+..+|.++++++++.+.+.+ |||++|++.+++++++.+++....+|+|+++++
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~  228 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC  228 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC
Confidence            3677899999999999999999999999999999999999999985 999999998888877766666666677876665


Q ss_pred             CCHHHHHHHHhccCC-C-CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198           80 LRPAEKKLIVSSCAS-K-EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL  157 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i  157 (301)
                      .+++|++...+..++ + +..++.++++++++|.+|...+..++..++.+.+.+|+|+|+++++|+|..++++...++.+
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~  308 (465)
T TIGR00894       229 ISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL  308 (465)
T ss_pred             CCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence            555554433221111 1 11123478999999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198          158 TMAFSANLGGWIADTLVSKGLSVT-TVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       158 ~~~~g~~~~G~l~Dr~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++.++.+++|+++||.++|+.... ..++..........+........ ..+....+.++..+.+.........+....+
T Consensus       309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  388 (465)
T TIGR00894       309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLD  388 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhh
Confidence            999999999999999987644322 22223322222222222211112 2233333333322222212222223334456


Q ss_pred             cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198          236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTGEK  298 (301)
Q Consensus       236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  298 (301)
                      ..|+.+|++.++.|..+++++.++|.+.|++.|.   ++|..+|.+.++..+++.+....+.+.++
T Consensus       389 ~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  454 (465)
T TIGR00894       389 LAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAER  454 (465)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeeccee
Confidence            7788999999999999999999999999999886   34888999888888888777666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=5.9e-28  Score=218.99  Aligned_cols=264  Identities=13%  Similarity=0.049  Sum_probs=180.5

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      +....++||+|+|||++++++.+++.++|.++++++++++.+.+|||+.|++.++++++..+++....||+|+++++..+
T Consensus        98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~  177 (368)
T TIGR00903        98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG  177 (368)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Confidence            34566799999999999999999999999999999999999999999999998998877655555567777754322110


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g  162 (301)
                      .+ +          .  ..++++++|||.+|...+..++....+|++.+|+|+|+++ +|+|.. .+....+..+.+.++
T Consensus       178 ~~-~----------~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g  242 (368)
T TIGR00903       178 FK-D----------A--VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG  242 (368)
T ss_pred             hH-H----------H--HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH
Confidence            00 0          0  0136789999999999999999889999999999999965 688864 565555555544444


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-Cch
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS  241 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~  241 (301)
                         .++++||..||+.+....+.     .....++.........++...+.++.....+.....+..++..+|..| +.|
T Consensus       243 ---~~~~~d~~~r~~~r~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r  314 (368)
T TIGR00903       243 ---VAVIPDRVARAGLRSIYIRA-----AALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELH  314 (368)
T ss_pred             ---HHHhhHHhhhhhhHHHHHHH-----HHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhc
Confidence               58999998765322111111     111111111112222223232222222111111122224455567766 589


Q ss_pred             HHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198          242 GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      |++.|+.|..+++++..+|.+.+.+..  +....|.+.++..+++.+...
T Consensus       315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998874  677888888888888776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=9.7e-28  Score=214.16  Aligned_cols=262  Identities=23%  Similarity=0.278  Sum_probs=191.5

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      .+.++.++..||+||+++++++++|.+++.++|.|++.++.+.+|||+.|+..+.++++..+.....+|  |++.++-++
T Consensus       121 i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~  198 (394)
T COG2814         121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP  198 (394)
T ss_pred             HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC
Confidence            456788999999999999999999999999999999999999999999999999998776444444444  222111000


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g  162 (301)
                      .             +  ..+..+++|+|..+..++..++.+.+.|..++|+-+++++..|+|.+..++.+..+++++.+|
T Consensus       199 ~-------------~--~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G  263 (394)
T COG2814         199 G-------------P--LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG  263 (394)
T ss_pred             c-------------c--hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH
Confidence            0             0  001235899999999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHH-h-hHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCC
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSI-G-FLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPR  239 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~  239 (301)
                      +.++|+++|| +.|+        .+... . .....+.+..  ...++...+..+. +++......+..+. ...+..|+
T Consensus       264 n~~gGrl~dr-~~~~--------~l~~~~~l~a~~~l~l~~--~~~~~~~~~~~~~~wg~a~~~~~~~~~~-~~a~~~p~  331 (394)
T COG2814         264 NLLGGRLADR-GPRR--------ALIAALLLLALALLALTF--TGASPALALALLFLWGFAFSPALQGLQT-RLARLAPD  331 (394)
T ss_pred             HHHHhhhccc-cchh--------HHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhhhhhhHHHH-HhcccCCC
Confidence            9999999999 4431        11111 1 1111111111  2223333322222 22222222222222 22335678


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+..+.++++...|+|-++|..++|.+.|+.|+....++.+...+++.+.....
T Consensus       332 ~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         332 AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888777776554333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=1.1e-27  Score=223.97  Aligned_cols=282  Identities=18%  Similarity=0.156  Sum_probs=189.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc---CCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP   78 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~---gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~   78 (301)
                      |...++++||+|++|||+++|+++.+.++|.++++++..++.+.+   +||..|.+.+++++++.++++...+|+|++++
T Consensus       141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~  220 (467)
T PRK09556        141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG  220 (467)
T ss_pred             hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC
Confidence            677899999999999999999999999999999999888777754   69999998888887665555555566665443


Q ss_pred             CCCHHHHHHHH-hccCCCCCCCCCC----h-HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh
Q 022198           79 QLRPAEKKLIV-SSCASKEPVKTIP----W-GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC  152 (301)
Q Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~~~----~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~  152 (301)
                      ..+++|..... .+..++.+.++.+    + ++++|+|.+|...+..++....+++..+|+|.|+++++|+|..++++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~  300 (467)
T PRK09556        221 WGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTF  300 (467)
T ss_pred             CCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            32222210000 0000000000111    2 2378999999988888887778888999999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhh
Q 022198          153 VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYS  231 (301)
Q Consensus       153 ~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  231 (301)
                      ....+++.++.+++|+++||+++|+....      ...... ............+.... +.+...+....... .....
T Consensus       301 ~~~~~~~~ig~~~~G~lsDr~g~r~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~  372 (467)
T PRK09556        301 TLFEIGALVGSLLWGWLSDLANGRRALVA------CIALAL-IIFTLGVYQHATSEYMYLASLFALGFLVFGPQ-LLIGV  372 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHH------HHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHH-HHHHH
Confidence            88899999999999999999987642111      000111 11111111122233222 22222221111111 11112


Q ss_pred             hhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcc------------cCcchHHHHHHHHHHHHHHHHHH
Q 022198          232 NHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQ------------HGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       232 ~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~------------~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      ...|..| +.+|++.|+.|..+++ |++++|.+.|++.|            ..+|+.+|.+..++.+++++...
T Consensus       373 ~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        373 AAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            2235545 5899999999999997 66999999999999            56799999888777777755544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=3.8e-27  Score=218.47  Aligned_cols=284  Identities=14%  Similarity=0.134  Sum_probs=185.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC--CC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQ   79 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~--~~   79 (301)
                      |...+++.||+|+|+|++++++++++.++|..+++++.+++.+.+|||+.|++.+++.++..+++....+|+|++.  ++
T Consensus       130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~  209 (434)
T PRK11663        130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPS  209 (434)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCC
Confidence            5677899999999999999999999999999999999999999999999999888776554333333456655432  11


Q ss_pred             CCHHHHHHHHhccCCCCCCCCCChH-----HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198           80 LRPAEKKLIVSSCASKEPVKTIPWG-----LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL  154 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~  154 (301)
                      .++.+++....+++.++  ++.+++     ..+|+|.+|...+..++.....+++.+|+|+|+++++|+|..+++.....
T Consensus       210 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~  287 (434)
T PRK11663        210 VGEWRHDALELAQQQEG--AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSM  287 (434)
T ss_pred             cccccccccccchhccc--cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            11100000000000000  011222     25678888887777666666777888999999988899999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhh
Q 022198          155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNH  233 (301)
Q Consensus       155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  233 (301)
                      ..+++.++.+++|+++||+.+|+.+..   .................. ...+.... ..+...++.... .........
T Consensus       288 ~~~~~~~g~~~~g~l~dr~~~~~r~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  362 (434)
T PRK11663        288 FELGGFIGALVAGWGSDKLFNGNRGPM---NLIFAAGILLSVGSLWLM-PFASYVMQAACFFTIGFFVFG-PQMLIGMAA  362 (434)
T ss_pred             HHHHHHHHHHHHhhhHHHhccCCccHH---HHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence            899999999999999999854321110   011111111111111111 11222121 112212211110 111111223


Q ss_pred             hccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          234 QDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       234 ~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      .|.. +++++++.|+.|..+++|++++|.+.|++.|+.||+..|...+++.+++++....
T Consensus       363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            4444 4689999999999999999999999999999988999999888877776654433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=6.3e-26  Score=205.52  Aligned_cols=287  Identities=26%  Similarity=0.413  Sum_probs=194.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.++.+....+|..+++++++.+.+..|||+.|++.+++.++..+......+|+|+++++.+
T Consensus       101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (399)
T TIGR00893       101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT  180 (399)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCC
Confidence            56778999999999999999999999999999999999999999999999998777766544444334455444332222


Q ss_pred             HHHHHHHHhc------cCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           82 PAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        82 ~~~~~~~~~~------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      +++++...++      ..+++..+..+.++++|+|+++...+..++.....+...+|.|.|+++++|+|..+++.+....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (399)
T TIGR00893       181 EEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP  260 (399)
T ss_pred             HHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHH
Confidence            2222111110      0011111223467789999999888888887788888999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      .++..++.+++|+++||+++|+........ ..........+..............+.....+..... ..+..+....|
T Consensus       261 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  338 (399)
T TIGR00893       261 GIVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISD  338 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHh
Confidence            899999999999999999987522111111 1111111111111111111122222222211111111 12233444445


Q ss_pred             cC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHHHH
Q 022198          236 IA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       236 ~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~~~  290 (301)
                      .. ++.++++.|+.+...++++.++|.+.|++.|+.| +...|.+.+++.+++.+..
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       339 NAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            54 4689999999999999999999999999999966 9988888877777765554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=2.8e-26  Score=211.30  Aligned_cols=272  Identities=17%  Similarity=0.223  Sum_probs=180.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------hcCCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA   75 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~   75 (301)
                      |...++++||+|+|+|++++++++.+.++|.++++++++++.+      .+|||++|++.++++++...++....+|+|+
T Consensus       115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            5667889999999999999999999999999999999998864      4799999999888776654444445677776


Q ss_pred             CCCCCCHHHHHHHHh----cc---C-CCCC--CC----CCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH-
Q 022198           76 EDPQLRPAEKKLIVS----SC---A-SKEP--VK----TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV-  140 (301)
Q Consensus        76 ~~~~~~~~~~~~~~~----~~---~-~~~~--~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~-  140 (301)
                      +.+.++++|++...+    +.   + .++.  ..    +..+++++ +|.+|...+.+++....++++.+|+|+|+++. 
T Consensus       195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~  273 (412)
T TIGR02332       195 KAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFN  273 (412)
T ss_pred             cCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            544344433321111    00   0 0000  00    11244444 57788888888888888899999999999873 


Q ss_pred             hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 022198          141 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG  220 (301)
Q Consensus       141 ~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (301)
                      .|+|..+++.+..+..++..+|.+++|+++||+++|+.       ... .........+.......++...+..+.. .+
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  344 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-------HTA-LPYLFAAAGWLLASATDHNLIQLLGIIM-AS  344 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-------HHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Confidence            47888889998899999999999999999999976521       111 1111111111111112222222111111 11


Q ss_pred             hhhhhhcch-hhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHH
Q 022198          221 TDAFSQSGL-YSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLY  283 (301)
Q Consensus       221 ~~~~~~~~~-~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~  283 (301)
                      .+....... +....+. ++++++++.|+.|..+++|++++|.+.|.+.|+ ++|+.++.+++++.
T Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       345 MGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            111111111 2222333 456899999999999999999999999999998 56999888776554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.94  E-value=2.5e-25  Score=206.23  Aligned_cols=276  Identities=14%  Similarity=0.111  Sum_probs=175.7

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSK-AHS   72 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~   72 (301)
                      |.+.++++|++|+||||++.++.+.+...|..+++.+...+.        +.+|||++|++.++++++.  ++++. .+|
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~--~~~~~~~~e  220 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA--LWLRRQLDE  220 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH--HHHHhcCCC
Confidence            677899999999999999999999998888888887665543        3689999999866666543  33332 333


Q ss_pred             CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHH-hhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198           73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF-CHNWGTFILLTWMPTYYNQVLHFNLTESGLF  151 (301)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~  151 (301)
                      +|+       .|++.       +++  +.++++++|+|+.+...+... +....+|.+.+|+|+|+++++|++..+.+..
T Consensus       221 ~~~-------~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~  284 (432)
T PRK10406        221 TSQ-------QETRA-------LKE--AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI  284 (432)
T ss_pred             Cch-------HHHhh-------hcc--cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            221       11100       001  225788999998876654444 3366788899999999999899999899888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH-HHHHhhccCChHHHHHHHHHHHhhhhhhhcchh
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF-FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY  230 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (301)
                      ..+..++..++.++.|+++||++||+..      ............ ........+++...+.+.........+..+...
T Consensus       285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
T PRK10406        285 MTAALFVFMLIQPLIGALSDKIGRRTSM------LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISG  358 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777788888899999999999876311      001111101111 111111222333222222111111111112223


Q ss_pred             hhhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCccccC
Q 022198          231 SNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD  301 (301)
Q Consensus       231 ~~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~  301 (301)
                      ....|..| +.|+++.|+.+..+++ .+...|.+.+.+.+.+++...+.+.++..+++.+.....++++|.+.
T Consensus       359 ~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~  431 (432)
T PRK10406        359 ILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMR  431 (432)
T ss_pred             HHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhcccccC
Confidence            34456655 6899999999988886 35568888885533355666777677777777666666777777653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.94  E-value=8.4e-25  Score=203.80  Aligned_cols=285  Identities=16%  Similarity=0.211  Sum_probs=176.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHH-HhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~-g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |...+.+.||+|+|+|++++|+++.+.++|..+ ++.++..+....|||+.|++.+++.++..++.....+|+|++.+..
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP  218 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence            556678899999999999999999999998754 4444434444569999999988777665444444556665432111


Q ss_pred             CHHHHHHHHhccCCCCCCCCCCh-----HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPW-----GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-----~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      +++|.+....+..+++..++.+.     +.++|+|.+|...+..++.+...++..+|+|.|+++++|++..+++.+..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~  298 (452)
T PRK11273        219 PIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  298 (452)
T ss_pred             ChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            11111000000000000011122     2367899999888887777777888999999999998999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhh
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQ  234 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      .++..++.+++|+++||+++++....    .+....+..............++...+. ....+...... .........
T Consensus       299 ~~~~~~g~~~~G~l~dr~~~~r~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~  373 (452)
T PRK11273        299 EYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP-VMLIGLHAL  373 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcchH----HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence            88999999999999999954321100    0111111111111111111222222211 12122111110 111111223


Q ss_pred             ccC-CCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198          235 DIA-PRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       235 ~~~-p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      |.. ++.+|++.|+.+..+++++.+ +|.+.|++.|+.||+.+|.++++..+++++...
T Consensus       374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            444 468999999999999998776 799999999998899999887776666654433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=1e-24  Score=199.39  Aligned_cols=263  Identities=15%  Similarity=0.160  Sum_probs=185.6

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|||++++|+++.+.++|..+|+++++.+.+.+|||++|++.++++++.........||+|++++   
T Consensus       116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---  192 (390)
T PRK03545        116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS---  192 (390)
T ss_pred             HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---
Confidence            45678899999999999999999999999999999999999999999999999888776543333333444332110   


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                       ++               ..++++++|+|.++......++.....+...+|+|.|+++++|+|..+++.+.....++..+
T Consensus       193 -~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~  256 (390)
T PRK03545        193 -GS---------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGII  256 (390)
T ss_pred             -ch---------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence             00               01345688999888766666666666777788999999988999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~  240 (301)
                      +.++.|+++||+++|.        ............... .....+....+.+ ...+.+..... ........+..|+.
T Consensus       257 g~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~  326 (390)
T PRK03545        257 GSVLFSRLGNRHPSGF--------LLIAIALLLVCLLLL-LPAANSEWHLSVLSIFWGIAIMCIG-LAMQVKVLKLAPDA  326 (390)
T ss_pred             HHHHHHHHhhccchhH--------HHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhcch-HHHHHHHHHhCCCc
Confidence            9999999999987541        111111111111111 1122233222222 22222221111 11223344556788


Q ss_pred             hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ++.+.|+.+...++|..+||.+.|++.|+.+++..|.+.+.+.+++++.....
T Consensus       327 ~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        327 TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999888888876665444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=7.4e-25  Score=203.38  Aligned_cols=290  Identities=18%  Similarity=0.281  Sum_probs=180.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |.....+.|++|+|+||+++++.+++.++|..+++++.+...+ ..|||+.|++.+++.++..+......+|+|++++ .
T Consensus       137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~  215 (438)
T TIGR00712       137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG-L  215 (438)
T ss_pred             HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC-C
Confidence            4556788999999999999999999999999999887776544 5799999999888776644344444566554321 1


Q ss_pred             CHHHHHHHH-hccCCCCCCCCCC-----hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198           81 RPAEKKLIV-SSCASKEPVKTIP-----WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL  154 (301)
Q Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~  154 (301)
                      ++.++.... .++..++++.+.+     ++.++|+|.+|...+..++.....+++.+|+|.|+++.+|+|+.+++++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~  295 (438)
T TIGR00712       216 PPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFL  295 (438)
T ss_pred             CCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHH
Confidence            111100000 0000000000111     2347899999988777777667778899999999999899999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcch-hhhh
Q 022198          155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL-YSNH  233 (301)
Q Consensus       155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  233 (301)
                      ..++..++.+++|+++||+++++....    .....................++......+ ...+......... ....
T Consensus       296 ~~~~~~ig~~~~g~l~dr~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  370 (438)
T TIGR00712       296 YEYAGIPGTLLCGWMSDKVFKGNRGAT----GVFFMTLVTIAVIVYWMNPAGNPLVDMICM-IVIGFLIYGPVMLIGLHA  370 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccHH----HHHHHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHccHHHHHHHHH
Confidence            888999999999999999965421111    000000111111111111112222221111 1111111111111 1122


Q ss_pred             hcc-CCCchHHHHHHHhHHHhhHH-hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198          234 QDI-APRYSGVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE  297 (301)
Q Consensus       234 ~~~-~p~~~g~a~g~~~~~~~lgg-~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~  297 (301)
                      .+. +++.+|++.|+.+..+++++ .++|.+.|.+.|+.|++.+|.+..+..+++.+.......||
T Consensus       371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            234 44689999999999989876 58999999999998899999887776666654444433333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=2e-24  Score=202.51  Aligned_cols=279  Identities=14%  Similarity=0.086  Sum_probs=178.0

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------hcCCchhHHhhhhhHHHHHHHHhhhccCCC
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSP   74 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p   74 (301)
                      +..+++||+|+|+||+++|+.++..++|..+++.+.+.+..         ..|||+.|++.++++++..+.+....+|.|
T Consensus       144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            44578999999999999999988878888777666655432         258999999988887665444443333444


Q ss_pred             CCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198           75 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL  154 (301)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~  154 (301)
                      +++  .++.++    +. ..++......+++.++++++|...+.+++.....+.+.+|+|+|+++++|+|+.+++.+..+
T Consensus       224 ~~~--~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~  296 (476)
T PLN00028        224 DGN--YRELKK----SG-TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAAS  296 (476)
T ss_pred             CCc--hhhHHh----cC-ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Confidence            321  111110    00 00111001135667889998887776665555667788999999998899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhh
Q 022198          155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNH  233 (301)
Q Consensus       155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  233 (301)
                      ..++..++.+++|+++||++||.....  |+...........+........++....+..+ ..+.+.. ...+..++..
T Consensus       297 ~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~  373 (476)
T PLN00028        297 FGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ-AACGATFGIV  373 (476)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HhhhhhcccC
Confidence            999999999999999999987632111  22222222222222222222222222222211 1111111 1222344445


Q ss_pred             hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       234 ~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+..|+.+|++.|+.+..+++|+.++|.+.+ ..+.++|..+|.+.+++.+++.+.....
T Consensus       374 ~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        374 PFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             cccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            5667888999999998888888888887765 2234579999998888888776665444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.4e-24  Score=192.29  Aligned_cols=268  Identities=19%  Similarity=0.284  Sum_probs=193.1

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC---CchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g---WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      ....++++|||||++|.++|+.. ..|+|..+...++++++...|   ||.+-.+..+.-++.++..+....|.|+..++
T Consensus       124 v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~  202 (417)
T COG2223         124 VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS  202 (417)
T ss_pred             cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence            45678999999999999999999 779999999999999999999   99999886665555444444455565542111


Q ss_pred             CCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198           80 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM  159 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~  159 (301)
                      .++.               ...+++.++++|..|...+.++....++-++..|+|.|+++++|.|+.+++.+.....+.+
T Consensus       203 ~~~~---------------~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g  267 (417)
T COG2223         203 VKPQ---------------LPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIG  267 (417)
T ss_pred             cccc---------------chhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence            1110               0024567899999999999988876677789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh-cc---CChHHHHH-HHHHHHhhhhhhhcchhhhhh
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-HV---DSPAMAVL-CMACSQGTDAFSQSGLYSNHQ  234 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      .+..+++|+++||+|.+|....      ....+......+.... ..   .+....+. ++.... +........+...+
T Consensus       268 ~l~Rp~GG~LsDR~Gg~rv~~~------~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~-~~G~GnGsvfk~Ip  340 (417)
T COG2223         268 ALARPLGGWLSDRIGGRRVTLA------VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV-FAGLGNGSVFKMIP  340 (417)
T ss_pred             HHHHhccchhhhhccchhHHHH------HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH-HhccCcchheeech
Confidence            9999999999999997642211      1111111111111111 01   11222222 222211 11223344566666


Q ss_pred             ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          235 DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       235 ~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+.|++.|.+.|+....|.+||..-|...|...|+ ++++..|++...+++++.......
T Consensus       341 ~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         341 VIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999998 558999999999999887654444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=1.5e-23  Score=197.37  Aligned_cols=276  Identities=14%  Similarity=0.165  Sum_probs=163.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS   73 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~   73 (301)
                      |++.++++||+|+|+||++.++.+.+..+|..+|..+...+.        +.+|||++|++.++++++ ..+.....+|+
T Consensus       137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es  215 (490)
T PRK10642        137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET  215 (490)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence            567889999999999999999999998899888886665443        368999999985554443 22333345665


Q ss_pred             CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcC-hhHHH-HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198           74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWA-LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF  151 (301)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~-~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~  151 (301)
                      |+...+.++.++    .+.++..+.++.++++++++ ++.+. .....++....+|++.+|+|+|+++.+|++..++++.
T Consensus       216 p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~  291 (490)
T PRK10642        216 PAFQQHVDKLEQ----GDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLI  291 (490)
T ss_pred             hhHHHHHHhhhh----hccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            542100000000    00000001123467777764 23222 2333344567788899999999998899998888887


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchh
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLY  230 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (301)
                      .....++..++.++.|+++||+|||+...      ...+.+...+..........+....... ...++..+.. .+...
T Consensus       292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~~  364 (490)
T PRK10642        292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVI------LGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF-TGVMA  364 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            77778889999999999999998762110      0011111111111111122222221111 1111111111 11112


Q ss_pred             hhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198          231 SNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       231 ~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ....+.. ++.|+++.|+.+..+++++.++|.+.|++.+. ++|...+....+..+++.+.
T Consensus       365 ~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        365 STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            2223444 46899999987777888899999999999886 44555444444444444443

>PRK09952 shikimate transporter; Provisional

Probab=99.93  E-value=1.7e-23  Score=194.30  Aligned_cols=277  Identities=15%  Similarity=0.162  Sum_probs=170.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSK-AHS   72 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~   72 (301)
                      |++.++++|++|+|+||+..+..+.+..+|.+++..+..++.        +.+|||.+|++.+++.++  ..+++. .+|
T Consensus       144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~--~~~l~~~~~e  221 (438)
T PRK09952        144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI--ALWVRNGMEE  221 (438)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH--HHHHHHhCCC
Confidence            567789999999999999999999999999999988777665        358999999986655433  233332 233


Q ss_pred             CCCCCCCCCHHHHHHHHhccCCCCCCCCCCh-HHhhcChhHHHHH-HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhh
Q 022198           73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPW-GLILSKPPVWALI-VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL  150 (301)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~-~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~  150 (301)
                      +|+.    .+ +++  +.  ++++  ++.++ +.++|+|+.|... ...++.....|...+|+|+|+++++|++..+...
T Consensus       222 s~~~----~~-~~~--~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~  290 (438)
T PRK09952        222 SAEF----EQ-QQH--EQ--AAAK--KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN  290 (438)
T ss_pred             ChhH----HH-HHh--hc--cccc--ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            3321    00 000  00  0000  11233 3467787776654 3455666788889999999999999999876655


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHH-HHhhhhhhhcc
Q 022198          151 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMAC-SQGTDAFSQSG  228 (301)
Q Consensus       151 ~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  228 (301)
                      ......+...++.++.|+++||++||+....      ..+......+.........+.... +..... +.+.+ ...+.
T Consensus       291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  363 (438)
T PRK09952        291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYIT------GALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD-MVVCV  363 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHH------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-HHHHH
Confidence            5556677788899999999999987631110      001001111111111111222222 211111 11111 11122


Q ss_pred             hhhhhhccCC-CchHHHHHHHhHHHh-hHHhHHHhHhhhhccc--CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198          229 LYSNHQDIAP-RYSGVLLGLSNTAGV-LAGVFGTAATGYILQH--GSWDDVFKVSVGLYLVGTAVWNLFSTGEK  298 (301)
Q Consensus       229 ~~~~~~~~~p-~~~g~a~g~~~~~~~-lgg~~~~~l~g~l~~~--~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  298 (301)
                      .++...|..| +.|+++.++.+..++ ++++++|.+.|++.|.  ++|...+...+++.+++++....+..++|
T Consensus       364 ~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~  437 (438)
T PRK09952        364 QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQR  437 (438)
T ss_pred             HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccccc
Confidence            3344556555 578888888766655 8999999999999885  35887777777777777666555544443

>TIGR00897 2A0118 polyol permease family

Probab=99.92  E-value=9.5e-23  Score=187.21  Aligned_cols=269  Identities=15%  Similarity=0.110  Sum_probs=175.0

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhH-HHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~-~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      ...+.+.+++|+|||++++|+.+++.++|. .+++++++.+.+.+||+..++.......+..++.....+|.++.+ +.+
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  203 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQ  203 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-ccc
Confidence            445678899999999999999999999996 578999999999999666655432222211112222223321110 000


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++++         .++ ...++++++|+|++|...+..++...+.++..+|+|.|++ ++|+|..+.+.+.....+++.+
T Consensus       204 ~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~i  272 (402)
T TIGR00897       204 TREK---------FSE-LGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIV  272 (402)
T ss_pred             CCcc---------hhh-HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHH
Confidence            0000         000 0113567899999998877777777888999999999986 4899999999988888899999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP  238 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p  238 (301)
                      +.+..|+++||+++|+...     .............+.....  .++.... +.....+.+.+..  ........+..|
T Consensus       273 g~~~~g~l~dr~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~  345 (402)
T TIGR00897       273 FNVIFGIVGDKLGWMNTVR-----WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY--VPLAAVFPTLAP  345 (402)
T ss_pred             HHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCc
Confidence            9999999999998653210     0011111111111111111  1222222 2222222222221  112233345678


Q ss_pred             CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +++|.+.|+.|...++++.++|.+.|.+.|..|+...+++.+++++++.+..
T Consensus       346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999889999998888887765543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=9.1e-23  Score=184.79  Aligned_cols=264  Identities=16%  Similarity=0.113  Sum_probs=174.9

Q ss_pred             CchhhhHhhccCcchhHHH--HHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a--~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      |...++..|+.|+++|+++  .+....+.++|.++|+++++.+.+.+|||++|++.+++.++.........||+|+++++
T Consensus       106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (375)
T TIGR00899       106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG  185 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence            5667788899888888765  68888888999999999999999999999999998776655433333345554432210


Q ss_pred             CCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198           80 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM  159 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~  159 (301)
                         ++          +    +.+.++.+++|+++......++..........++|.|+++++|.++.+.+.+.....+..
T Consensus       186 ---~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~  248 (375)
T TIGR00899       186 ---AL----------T----RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLE  248 (375)
T ss_pred             ---cc----------C----cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence               00          0    112345677777776555544443344556788999999999999999998877666677


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP  238 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p  238 (301)
                      .++.+++|+++||+++|+.        +. ...+............++....... ...+.+.+. ..+......+|..|
T Consensus       249 ~~~~~~~g~l~~r~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~  318 (375)
T TIGR00899       249 IPFMLLAGYLIKRFGKRRL--------ML-LAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMP  318 (375)
T ss_pred             HHHHHhHHHHHHHhcchhH--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence            7888999999999986631        11 1111111111111111122222111 111222221 11222334456667


Q ss_pred             CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      ++++.+.++.+...++|+.++|.+.|.+.|+.|++..|.+.+++.+++.+....
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       319 GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            777899999999999999999999999999988999999888888777666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.91  E-value=2e-22  Score=189.57  Aligned_cols=271  Identities=14%  Similarity=0.186  Sum_probs=178.6

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |+..++..|++|+|||+++.++...+..+|.++++.++.++.+ .+|||.+|++.+++.++.....+ ..+|+++.. +.
T Consensus       126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~-~~  203 (491)
T PRK11010        126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTI-PV  203 (491)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc-cc
Confidence            4567889999999999999999999999999999999999998 57999999998877655433322 344433211 10


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh-hhhHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC-VLPWLTM  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~-~~~~i~~  159 (301)
                      ++++          +++ ...++++++++|..|...+..++...+.+....|.|+|+.+++|+|.++.+.+. ....++.
T Consensus       204 ~~~~----------~~~-~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~  272 (491)
T PRK11010        204 PKTL----------EQA-VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLAT  272 (491)
T ss_pred             ccch----------hhh-HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            0000          000 012467788888877666555555566677788999999888999999999987 4556789


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--HHHHHHHHHhhcc-CChHHHHHHHHHHHhhhhhhhcchhhhhhcc
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF--LGPAFFLTQLSHV-DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI  236 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      .+|.+++|+++||+++|+.        ......  ....+........ .+.........+......+.....++...+.
T Consensus       273 iiG~ll~G~L~dr~g~~~~--------l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l  344 (491)
T PRK11010        273 IVGALYGGILMQRLSLFRA--------LMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTL  344 (491)
T ss_pred             HHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987521        111111  1111111111111 2222211111110000111112223333334


Q ss_pred             C-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          237 A-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       237 ~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      . ++.+++..++.|....+|+.+++.+.|++.|+.||+..|.+.+++.+++.+.....
T Consensus       345 ~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        345 CNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            3 45788899999999999999999999999999889999988888888876665444

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=1.5e-22  Score=185.40  Aligned_cols=259  Identities=14%  Similarity=0.147  Sum_probs=169.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |...+++.|++|+|+|+++++..+....+|..+++.+.+.+.+ .+|||++|.+.+++.++..++..+  ++.|+.+++ 
T Consensus       114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~-  190 (394)
T PRK03699        114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKH-  190 (394)
T ss_pred             cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCcccccc-
Confidence            5567889999999999999999999989999999988887754 679999999877776554333332  222321110 


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~  160 (301)
                       +++        ++++. .+     ...+|.++...+..++...+.+.+.+|+|.|+++++|+|+.+++.+.....++..
T Consensus       191 -~~~--------~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~  255 (394)
T PRK03699        191 -APK--------ADKPV-AK-----EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYM  255 (394)
T ss_pred             -Ccc--------ccCcc-cc-----ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHH
Confidence             000        00000 01     1124566666666666666778889999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhhhhccCCC
Q 022198          161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAPR  239 (301)
Q Consensus       161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  239 (301)
                      +|.++.|+++||+++|+..        . ......++....+...++... .+.....++..+. ..+...+...+..|+
T Consensus       256 ig~~~~g~l~dr~~~~~~l--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~  325 (394)
T PRK03699        256 VGMWIFSFIVRFFDLQRIL--------T-VLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA-IYTTIITLGSQQTKV  325 (394)
T ss_pred             HHHHHHHHHHHHhchhhHH--------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC
Confidence            9999999999999876321        1 111111111111112223322 2222222222111 112222333344455


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~  288 (301)
                      .++...+..+..+++|+.++|.+.|++.|+.|+...++..+++++++..
T Consensus       326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            5666778888899999999999999999998899888887777776643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=3.4e-22  Score=183.39  Aligned_cols=264  Identities=19%  Similarity=0.216  Sum_probs=168.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.++.+.+..+|..+++.++..+.+.++||+.|++.+++.++.........||+|+.+++.+
T Consensus       122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  201 (406)
T PRK11551        122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG  201 (406)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC
Confidence            45678899999999999999999999999999999999989899999999998776555443333334455443211100


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcC---hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT  158 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~  158 (301)
                      +++         ++    +...++.+++   +..+..++..++.....+...+|+|.|+++ +|++..+.+.......++
T Consensus       202 ~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~  267 (406)
T PRK11551        202 AGK---------QR----APVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIG  267 (406)
T ss_pred             cch---------hh----hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHH
Confidence            000         00    0011223332   233344444455555677788999999976 699999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-
Q 022198          159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-  236 (301)
Q Consensus       159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-  236 (301)
                      ..++.++.|+++||+++|+.        +. ..++.............+......+ ...+.+.. ...+..+....+. 
T Consensus       268 ~~~~~~~~g~l~dr~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~  337 (406)
T PRK11551        268 GALGSLLIGALMDRLRPRRV--------VL-LIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFY  337 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHH--------HH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHc
Confidence            99999999999999986521        11 1111111111111222233222111 11111111 1112233334444 


Q ss_pred             CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198          237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ++++++++.|+.+..+++++.++|.+.|++.|+ +++...+.....+.+++.+.
T Consensus       338 p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        338 PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999998 45666666555555554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=3.1e-22  Score=183.33  Aligned_cols=263  Identities=16%  Similarity=0.149  Sum_probs=172.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |.+.+++.+++| |||+++++.+.++.++|..+|+.+++++.++. |||+.|.+.++..++....++...+++|+++   
T Consensus       116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  191 (393)
T PRK09705        116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASS---  191 (393)
T ss_pred             hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---
Confidence            456678899997 78999999999999999999999999998875 8999987766554433222322222222211   


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~  160 (301)
                       ++           ++.    +.++.+|+|+.|...+..++...++++..+|+|+|+++ +|+|..++++...+..+++.
T Consensus       192 -~~-----------~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i  254 (393)
T PRK09705        192 -HK-----------TTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQA  254 (393)
T ss_pred             -cC-----------CCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHH
Confidence             00           000    11235678888877776666677888899999999986 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-C
Q 022198          161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R  239 (301)
Q Consensus       161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~  239 (301)
                      +|.++.|++.||+++|+.       ......+.......... ...+......+ ..+.+.+...........++..| +
T Consensus       255 ~g~~~~g~l~~r~~~~~~-------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~~~~~~~~  325 (393)
T PRK09705        255 AGALLMPAMARHQDRRKL-------LMLALVLQLVGFCGFIW-LPLQLPVLWAM-VCGLGLGGAFPLCLLLALDHSVQPA  325 (393)
T ss_pred             HHHHHHHHHHhhccchHH-------HHHHHHHHHHHHHHHHH-ccchHHHHHHH-HHHHhccchHHHHHHHHHhhcCCHH
Confidence            999999999999876521       11111111111111111 11111111111 12222221111111112233333 5


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhhc
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFS  294 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~~  294 (301)
                      +++...|+.+..+++++.++|.+.|++.|+ ++++..|.+.+++.+++......+.
T Consensus       326 ~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        326 IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999998 5688888887777776655555553

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.91  E-value=2.8e-22  Score=183.55  Aligned_cols=262  Identities=15%  Similarity=0.075  Sum_probs=166.5

Q ss_pred             CchhhhHhhccCcchh--HHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         2 p~~~~~i~~~~p~~~r--g~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      |...+++.++.|+|+|  +...++.+.+.++|.++|+++++.+.+.+|||..|+..++++++..+......||+|+++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (393)
T PRK15011        124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPL  203 (393)
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc
Confidence            5566777888877665  45668999999999999999999999999999999988877766544444445554432211


Q ss_pred             CCHHHHHHHHhccCCCCCCCCCChHHhhcC-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198           80 LRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT  158 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~  158 (301)
                      . +++          .+        +..++ +..+......++.....+.+..|+|.|+++++|++..+.+.+.....++
T Consensus       204 ~-~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~  264 (393)
T PRK15011        204 A-TGT----------LE--------APRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGL  264 (393)
T ss_pred             c-ccc----------cc--------ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            0 000          00        00112 1223222233333334455668999999999999999999887776777


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhccC
Q 022198          159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIA  237 (301)
Q Consensus       159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  237 (301)
                      ..++.+++|+++||+++|+.        +. ................+++...+..... +...+.. .+......+|..
T Consensus       265 ~i~~~~~~G~l~dr~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~  334 (393)
T PRK15011        265 EIPTMLIAGYFAKRLGKRFL--------MR-VAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLM  334 (393)
T ss_pred             HHHHHHHHHHHHHHhChHHH--------HH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence            88899999999999987621        11 1111111111111112233322222111 1111111 111123345666


Q ss_pred             CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      |+.++.+.++.+...++|+.++|.+.|.+.|+.+|+..|.+.+++.+++++....
T Consensus       335 p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        335 PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            7789999999889899999999999999999888999988877777776655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.91  E-value=3e-23  Score=187.36  Aligned_cols=267  Identities=16%  Similarity=0.204  Sum_probs=172.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHh-hhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~-~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |...++++|++|+|+|+++.++.+.+..+|..+++ .++..+.+..|||+.|++.+.+.++..++.....+|+|++++..
T Consensus       102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (379)
T TIGR00881       102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLP  181 (379)
T ss_pred             CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccC
Confidence            67788999999999999999999999999999999 47777778899999999877776554444444455554322111


Q ss_pred             CHHHHHHHH-hc--cCCCC--CCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           81 RPAEKKLIV-SS--CASKE--PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        81 ~~~~~~~~~-~~--~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      ++++.+... ++  +.+++  ..++..+++++|+|.+|...+..++.....+.+.+|.|.|+++++|++..+++......
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  261 (379)
T TIGR00881       182 PAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLY  261 (379)
T ss_pred             ccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            100000000 00  00000  11112356688999999888777777777788899999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhh-hcchhhh
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFS-QSGLYSN  232 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  232 (301)
                      .++..++.++.|+++||..+|+..      ...................  ..+......+. ...+..... .......
T Consensus       262 ~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  334 (379)
T TIGR00881       262 ELGGLVGTLLAGWLSDKLFNGRRG------PLAVFFMALIIVSLLVYWLNPAANPLMDLICL-FALGFLVYGPQMLIGVI  334 (379)
T ss_pred             HHHcchhHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH-HHHHHHHhhhhHHHHHH
Confidence            999999999999999997544211      1111111111111111111  11222211111 111111111 1111222


Q ss_pred             hhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198          233 HQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV  275 (301)
Q Consensus       233 ~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~  275 (301)
                      ..+. +++.++++.|+.+...++++.++|.+.|.+.|+.||+..
T Consensus       335 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            3344 457899999999999999999999999999999877654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=3.9e-22  Score=179.99  Aligned_cols=261  Identities=19%  Similarity=0.148  Sum_probs=171.2

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      .+...+.+|+| |+|+++.++...+..+|..+++++.+.+.+.+|||+.|++.+++.++.........+|+|+++.+ ++
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  188 (377)
T TIGR00890       111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIK-TN  188 (377)
T ss_pred             hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccc-cC
Confidence            45567888987 57999999999999999988888888888889999999998887766544433333332221100 00


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g  162 (301)
                      +           +...++.+.++.+|+|..|...+..++..........+.|.|.+ ++|.+.++.+.+.....++..++
T Consensus       189 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  256 (377)
T TIGR00890       189 I-----------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGG  256 (377)
T ss_pred             c-----------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHH
Confidence            0           00001124567889999887776666655555566677777765 57999888999888889999999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CC
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-AP  238 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p  238 (301)
                      .++.|+++||++||+..       .  ......++.  ............... ....+.+.+.. .+.......|. ++
T Consensus       257 ~~~~g~l~dr~g~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~  326 (377)
T TIGR00890       257 RPFLGALSDKIGRQKTM-------S--IVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGP  326 (377)
T ss_pred             HHHHHHHHHHHhhhhhh-------h--HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhh
Confidence            99999999999876321       1  111111111  111111111111111 11111211111 11112233444 45


Q ss_pred             CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198          239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      ++++++.|+.+...++|+.++|.+.|.+.|+.||+..|.+.+++.+++.
T Consensus       327 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       327 ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999889999988877766654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=6.4e-22  Score=180.48  Aligned_cols=262  Identities=16%  Similarity=0.206  Sum_probs=166.8

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      ....++.|++|+++|+++++....+..+|..+++++++++.+.+|||++|++.+++.++..+......||.++++ +  +
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~-~--~  187 (382)
T PRK10091        111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA-K--G  187 (382)
T ss_pred             HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc-c--c
Confidence            345678999999999999999999999999999999999999999999999988876554333333444432211 0  0


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g  162 (301)
                      +.               +.++ +.+|++..|...+..++.+.+.+...+++|+|+++.+|+|+.+.+++.....++..++
T Consensus       188 ~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig  251 (382)
T PRK10091        188 GL---------------REQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLG  251 (382)
T ss_pred             CH---------------HHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            00               0012 3577887777665555555566666788899999889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccC-CCc
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIA-PRY  240 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~  240 (301)
                      .++.|++.||+++|+..       ................ ..++.... +.....+.+......+......++.. ++.
T Consensus       252 ~~~~g~l~~r~~~~~~~-------~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (382)
T PRK10091        252 NLLSGRLSGRYSPLRIA-------AVTDFIIVLALLMLFF-FGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL  323 (382)
T ss_pred             hHHHheeccccCchhHH-------HHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH
Confidence            99999999999865321       1111111111111111 11122222 21122222222111111111222222 344


Q ss_pred             hHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          241 SGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+.+.  .+...++|.++||.+.|++.|+ ++++..+.+.++..++.......+
T Consensus       324 ~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        324 LGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            55443  3677889999999999999996 789998888766655544433333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=2.4e-21  Score=177.51  Aligned_cols=255  Identities=17%  Similarity=0.196  Sum_probs=165.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.+...++.++|..+|+++++.+.+.+|||++|++.++++++.........||+|++++   
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~---  203 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS---  203 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc---
Confidence            56678899999999999999999999999999999999999999999999999877665543233233344321110   


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      +            +    ..+.++.+|+|.+|...+..++...+.++..+|.++++.+++|+++.+.+.......++..+
T Consensus       204 ~------------~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~ii  267 (394)
T PRK10213        204 H------------Q----KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFV  267 (394)
T ss_pred             c------------c----hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            0            0    11234688999998876666666666777778875555667899999999988888888889


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPR  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~  239 (301)
                      +.++.+++.||..++        ........ ....+.+..  ...++.... .....+.+..... +...+..++..|+
T Consensus       268 g~~~~~~l~~r~~~~--------~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~  336 (394)
T PRK10213        268 GTSLSSFILKRSVKL--------ALAGAPLVLAVSALVLTL--WGSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLAD  336 (394)
T ss_pred             HHHHHHHHHhccchh--------HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCcc
Confidence            988888888884321        11111111 111111111  112222221 1222222222111 2122223334455


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  286 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~  286 (301)
                      +.+...+......++|..+||.+.|++.|+.|+...+...+...++.
T Consensus       337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            55666666667778899999999999999978877777665544443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.90  E-value=1.1e-21  Score=181.85  Aligned_cols=250  Identities=12%  Similarity=0.102  Sum_probs=149.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS   73 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~   73 (301)
                      |+..++++|++|+|+|++++++.+.+.++|..+|+.+++.+.        +.+|||++|++... ...+ .++.+   +.
T Consensus       136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~-~~~~-~~~~~---~~  210 (434)
T PRK15075        136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL-IVPF-IFLIR---RS  210 (434)
T ss_pred             HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH-HHHH-HHHHH---Hh
Confidence            456789999999999999999999998888888888777663        57899999997333 2221 22222   22


Q ss_pred             CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh
Q 022198           74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL-IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC  152 (301)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~  152 (301)
                      +++++   +.+++   +    +++..+..+++..++++.+.. .+..++....++...+|.|.|+++.+|++..+++++.
T Consensus       211 ~~e~~---~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~  280 (434)
T PRK15075        211 LEETE---EFLAR---K----HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVT  280 (434)
T ss_pred             cCCCH---HHHHh---h----hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            22111   10000   0    000011124445566655543 3333445566778899999999998999999999888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhh
Q 022198          153 VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYS  231 (301)
Q Consensus       153 ~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  231 (301)
                      .+..++..++.+++|+++||++||+....     ..........+.........+...... ....+.+.+... +..+.
T Consensus       281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~  354 (434)
T PRK15075        281 LCVGVSNFIWLPIGGALSDRIGRRPVLIA-----FTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN-GAMVV  354 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hhHHH
Confidence            88888999999999999999987631100     000000101001111111122211111 111112222111 11223


Q ss_pred             hhhccC-CCchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcc
Q 022198          232 NHQDIA-PRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSW  272 (301)
Q Consensus       232 ~~~~~~-p~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~  272 (301)
                      ...|.. ++.|+++.++.+..++. ++.++|.+.|++.|+.|+
T Consensus       355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            334554 46899999987766665 588999999999998554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=4.5e-21  Score=174.17  Aligned_cols=254  Identities=15%  Similarity=0.183  Sum_probs=164.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.++.+....+|..+++.+++.+.+.+|||++|++.+++.++..+......||+++++++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (385)
T TIGR00710       112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ  191 (385)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC
Confidence            45678899999999999999999999999999999999999999999999998777665543333333444332211100


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      +++              ...++++++|+|+++...+...+.....+....+.|.++++++|+++.+.+++.....++..+
T Consensus       192 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  257 (385)
T TIGR00710       192 IST--------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIF  257 (385)
T ss_pred             HHH--------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            000              011345688999888776666555667778889999999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC-ChHHHHHHHH--HHHhhhhhhhcchhhhhhccCC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMA--CSQGTDAFSQSGLYSNHQDIAP  238 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p  238 (301)
                      +.++.|+++||+++|+...      .................... .....+....  .+.+.+.. .+.......|..|
T Consensus       258 ~~~~~g~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  330 (385)
T TIGR00710       258 GGFLNGRFIKKWGAKSLLR------MGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFP  330 (385)
T ss_pred             HHHHHHHHHHhcCHHHHHH------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCc
Confidence            9999999999998763111      11111111111111111111 1111111111  11222211 1222233345567


Q ss_pred             CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198          239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF  276 (301)
Q Consensus       239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f  276 (301)
                      +.++++.++.+...+.++.+.+.+.+.+.+..++...+
T Consensus       331 ~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~  368 (385)
T TIGR00710       331 HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSL  368 (385)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHH
Confidence            88899999999998887777777777554444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.90  E-value=1.3e-21  Score=184.61  Aligned_cols=290  Identities=12%  Similarity=0.105  Sum_probs=167.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-----------------------hcCCchhHHhhhhh
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----------------------RFGWPSVFYSFGSL   58 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-----------------------~~gWR~~F~~~g~l   58 (301)
                      |.+..+++|++|+|+||+++++.+....+|..+++.++..+.+                       .++||++|.+.++.
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            6678999999999999999999999999999999988776542                       25899999875554


Q ss_pred             HHHHHHHHhhhccCCCCCC---CCCCHHHHHHHH---hcc-C---CC-----CCC--CCCChHHhhcCh---hHHH----
Q 022198           59 GTVWFTVWLSKAHSSPAED---PQLRPAEKKLIV---SSC-A---SK-----EPV--KTIPWGLILSKP---PVWA----  114 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~---~~~-~---~~-----~~~--~~~~~~~ll~~~---~~~~----  114 (301)
                      +++ ..++....||+|+..   .+.++++++...   +++ .   ++     ++.  .+.+++++++++   +.++    
T Consensus       214 ~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (502)
T TIGR00887       214 ALL-ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG  292 (502)
T ss_pred             HHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence            443 344455679999732   111111111111   000 0   00     000  112577777642   2222    


Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhh------------HhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL------------FCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  182 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~------------~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~  182 (301)
                      .....++....+|+...|.|++++ +.|++..+++.            ...+..++..++.++.++++||+|||+.....
T Consensus       293 ~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~  371 (502)
T TIGR00887       293 TAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Confidence            122334455567888899999996 56998664332            12233345667889999999999987421110


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcc-CChHHHHHHHHHHHhhhhh-hhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHH
Q 022198          183 VRKIMQSIGFLGPAFFLTQLSHV-DSPAMAVLCMACSQGTDAF-SQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFG  259 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~  259 (301)
                            ..........+...... ............. .+... ..+..+....|..| +.|+++.|+.+..+++++.++
T Consensus       372 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~  444 (502)
T TIGR00887       372 ------FFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ-FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIG  444 (502)
T ss_pred             ------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHH
Confidence                  00111011111111111 1111111111111 11111 11222334457766 579999999999999999999


Q ss_pred             HhHhhhhcccC----------cchHHHHHHHHHHHHHHHHHH-hhcCCcccc
Q 022198          260 TAATGYILQHG----------SWDDVFKVSVGLYLVGTAVWN-LFSTGEKVV  300 (301)
Q Consensus       260 ~~l~g~l~~~~----------~~~~~f~~~~~~~~v~~~~~~-~~~~~~~~~  300 (301)
                      |.+.+++.|..          ++...|.+.+++.+++.+... +.+|+++.+
T Consensus       445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~l  496 (502)
T TIGR00887       445 QFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSL  496 (502)
T ss_pred             HHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCH
Confidence            99999999852          344566666666666544432 236665543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.89  E-value=1.5e-21  Score=184.06  Aligned_cols=255  Identities=15%  Similarity=0.101  Sum_probs=168.5

Q ss_pred             CchhhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-CC
Q 022198            2 PAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQ   79 (301)
Q Consensus         2 p~~~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~-~~   79 (301)
                      |.....+.+++ |+|+|+++.|++.....+|..+|+++++++.+++|||++|++..+++++...+.....||+|+++ ++
T Consensus       113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~  192 (495)
T PRK14995        113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP  192 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556676776 78999999999999999999999999999999999999999977776654444444455544322 11


Q ss_pred             CCHHHHHH-----------H----------------------------HhccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198           80 LRPAEKKL-----------I----------------------------VSSCASKEPVKTIPWGLILSKPPVWALIVSHF  120 (301)
Q Consensus        80 ~~~~~~~~-----------~----------------------------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  120 (301)
                      .+..+...           .                            ..+...++|  ..|+ +++|+|.++...+..+
T Consensus       193 ~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p--~~~~-~lf~~~~~~~~~~~~~  269 (495)
T PRK14995        193 LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRP--MIDM-RLFTHRIILSGVVMAM  269 (495)
T ss_pred             CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcCH-HHhCCcccHHHHHHHH
Confidence            22111000           0                            000011111  2233 4899999888777777


Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--  198 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--  198 (301)
                      +.....++...++|.|+|+.+|+|+.+++++..+..++..++.++.|++.||+++|+.        + ..+....++.  
T Consensus       270 ~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--------~-~~g~~~~~~~~~  340 (495)
T PRK14995        270 TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV--------A-TGGMALSALSFY  340 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--------H-HHHHHHHHHHHH
Confidence            7777788888999999999999999999999999999999999999999999986521        1 1111111111  


Q ss_pred             -HHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          199 -LTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       199 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                       +.......+.... ......+.+.+....+.......+.++++++.+.++.|...++|+.+|+.+.|.+.+
T Consensus       341 ~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        341 GLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111122222222 222222333332221112222334455788999999999999999999999999865

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=2.5e-21  Score=174.05  Aligned_cols=249  Identities=14%  Similarity=0.093  Sum_probs=164.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhh-hccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS-KAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~-~~~~~p~~~~~~   80 (301)
                      |+..+++.|++|++||+++.++.+.+..+|..+|+.+++.+.+.+|||+.|++.++..++....... ..+|+++++ + 
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  188 (365)
T TIGR00900       111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-I-  188 (365)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-c-
Confidence            5677899999999999999999999999999999999999999999999999866654433222222 122221111 1 


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHH-HhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWMPTYYNQVLHFNLTESGLFCVLPWLTM  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~wlp~~l~~~~g~s~~~~~~~~~~~~i~~  159 (301)
                      ++.+++...+        .+.++++++|+|.++...+..++.....+... .+.|.|.++.+|.+..+.+.+.....++.
T Consensus       189 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (365)
T TIGR00900       189 QALSNAVLRD--------TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGA  260 (365)
T ss_pred             cccchhHHHH--------HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            1100000000        01235678899998887776666666666665 89999998889999999999998889999


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC-ChHHH-HHHHHHHHhhhhhhhcchhhhhhcc-
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-  236 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  236 (301)
                      .++.++.+++.||.++|.        ... ......++......... +.... +.....+++.+.. .+...+...+. 
T Consensus       261 ~~~~~~~~~l~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  330 (365)
T TIGR00900       261 LLGALLLGLLGRYFKRMA--------LMT-GAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRV  330 (365)
T ss_pred             HHHHHHHHHHHHHhchhH--------HHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence            999999999999987552        111 11111111111111111 12221 1122222222211 12233334444 


Q ss_pred             CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198          237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG  270 (301)
Q Consensus       237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~  270 (301)
                      ++++++.+.|+.+...++++.++|.+.|++.|+.
T Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       331 PAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4568999999999999999999999999998863

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=1.3e-20  Score=173.19  Aligned_cols=252  Identities=13%  Similarity=0.058  Sum_probs=163.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |....++.|++|+++|+++.++......+|..+|+.+++.+.+..|||++|++.+++.++.........||++++.++ +
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  198 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGE-K  198 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccc-c
Confidence            455678899999999999999999888899999999999999999999999987777655433333334443321110 0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++.++            ...+++++++||.++...+..++.....+...++.|.|+++++|+++.+.+.......++..+
T Consensus       199 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~  266 (406)
T PRK15402        199 LSLKE------------LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIA  266 (406)
T ss_pred             ccHHH------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            00000            011356789999988876666555555666778899999999999999998887777788889


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHh--hccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQL--SHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA  237 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
                      +.++.|+++||+++|+.       ..... ............  ....+..... .....+.+.+.. .+..........
T Consensus       267 g~~~~g~l~~r~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~~  338 (406)
T PRK15402        267 GNLTLARLTSRRPLRSL-------IRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLFSS  338 (406)
T ss_pred             HHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH-hhhHHHHHhhhc
Confidence            99999999999976521       11111 011111111111  1111222211 111122222211 122222222334


Q ss_pred             CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198          238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD  274 (301)
Q Consensus       238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~  274 (301)
                      ++.+|...+..+....++..+|+.+.+.+.+..++..
T Consensus       339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            5788999999999999999999999999988855443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=2.2e-21  Score=178.70  Aligned_cols=268  Identities=14%  Similarity=0.100  Sum_probs=163.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-----hh-------------cCCchhHHhhhhhHHHHH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-----HR-------------FGWPSVFYSFGSLGTVWF   63 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-----~~-------------~gWR~~F~~~g~l~~~~~   63 (301)
                      |.+.+.+++|||+||||++.|+...+.++|..++..+.+.++     +.             .|||.++++..++.++..
T Consensus       146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~  225 (462)
T PRK15034        146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT  225 (462)
T ss_pred             HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999997777777776665554433     32             336777766666554433


Q ss_pred             HHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC
Q 022198           64 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF  143 (301)
Q Consensus        64 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~  143 (301)
                      ++.....+|.|+++  .+                  ..+..+.+|+|..|...+.+++...++.++..|+|.|+++.+  
T Consensus       226 i~~~~~~~~~~~~~--~~------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--  283 (462)
T PRK15034        226 IAAWSGMNDIASSR--AS------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--  283 (462)
T ss_pred             HHHHHhCCCccccc--cC------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            33332332222110  00                  113456899999999998888876566668889999998765  


Q ss_pred             CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccC-ChH-H-HHHHHHHHH
Q 022198          144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVD-SPA-M-AVLCMACSQ  219 (301)
Q Consensus       144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~-~~~~~~~~~  219 (301)
                      +..+......+..+.+.+..+++|+++||+|+|+....      ..+.....+.. ........ ... . ...++....
T Consensus       284 ~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~------~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~  357 (462)
T PRK15034        284 PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI------NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL  357 (462)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            33333333444567788899999999999987632111      11111111111 11111110 111 1 111111111


Q ss_pred             hhhhhhhcchhhhhhccCC----------------------CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHH
Q 022198          220 GTDAFSQSGLYSNHQDIAP----------------------RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVF  276 (301)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~p----------------------~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f  276 (301)
                      ..+ ..+...+...+...|                      ++.|.+.|+.+..|.+||.+-|.+.|...+. +++...|
T Consensus       358 ~~G-~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~  436 (462)
T PRK15034        358 TAG-LGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAM  436 (462)
T ss_pred             Hhc-ccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHH
Confidence            111 112223322222222                      2678999999999999999999999999887 7799999


Q ss_pred             HHHHHHHHHHH-HHHHhhcCCcc
Q 022198          277 KVSVGLYLVGT-AVWNLFSTGEK  298 (301)
Q Consensus       277 ~~~~~~~~v~~-~~~~~~~~~~~  298 (301)
                      +...++|++|. +.+....|++.
T Consensus       437 ~~~~~~~~~~~~~~w~~y~r~~~  459 (462)
T PRK15034        437 KVFLIFYIVCVLLTWLVYGRRKF  459 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCc
Confidence            99999999886 44444455544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.89  E-value=1.2e-21  Score=177.77  Aligned_cols=261  Identities=15%  Similarity=0.154  Sum_probs=163.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS   73 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~   73 (301)
                      |+..++++|++|+|+|++..++.+.+..+|..+++.++..+.        +.+|||+.|++.+++.++. .......+|+
T Consensus       115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~  193 (394)
T TIGR00883       115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEET  193 (394)
T ss_pred             cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCC
Confidence            566789999999999999999999999999999988776654        4679999999866554432 2222223333


Q ss_pred             CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChh--HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198           74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF  151 (301)
Q Consensus        74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~  151 (301)
                      |+++     ++++      ++++  .+.++++.+++++  ++......++.....+...+|+|.|+++++|.+..+.+..
T Consensus       194 ~~~~-----~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  260 (394)
T TIGR00883       194 PVFE-----KAQE------KHKK--KRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLV  260 (394)
T ss_pred             hhHH-----HHHh------cccc--ccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence            2110     1000      0011  1234666777765  6666666666666777888999999998999999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhhccCChHHHHHHH-HHHHhhhhhhhcch
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGL  229 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  229 (301)
                      .....++..++.++.|+++||+++|+...      .......... ..........+........ ..+.+.+.. .+..
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~  333 (394)
T TIGR00883       261 LMLSLILFFITIPLSGALSDRIGRRPVLI------IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY-TGPM  333 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHH------HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhhH
Confidence            88888999999999999999998763110      0111111111 1111111112222222211 112212111 1223


Q ss_pred             hhhhhccCC-CchHHHHHHHh-HHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHH
Q 022198          230 YSNHQDIAP-RYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLY  283 (301)
Q Consensus       230 ~~~~~~~~p-~~~g~a~g~~~-~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~  283 (301)
                      .+...|..| +.|+++.++.+ ....+++.++|.+.|++.|+.| |...+....+..
T Consensus       334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            344455555 57888877754 4445678899999999999865 776655554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.89  E-value=4e-21  Score=186.54  Aligned_cols=287  Identities=13%  Similarity=0.094  Sum_probs=172.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------------CCchhHHhhhhhHHHHHHHHhh
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------------GWPSVFYSFGSLGTVWFTVWLS   68 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------------gWR~~F~~~g~l~~~~~~~~~~   68 (301)
                      |.+..+++|++|+++||+.++++.+...+|.++++.++..+.+.+             +||+.|++.+++.++ .++...
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~  352 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALT  352 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH-HHHHHH
Confidence            667889999999999999999999999999999998887776543             589998875554443 345555


Q ss_pred             hccCCCCCCCCCCH-HHHHH-H---H--------------------hc-cCC---C-CCCCC------------------
Q 022198           69 KAHSSPAEDPQLRP-AEKKL-I---V--------------------SS-CAS---K-EPVKT------------------  100 (301)
Q Consensus        69 ~~~~~p~~~~~~~~-~~~~~-~---~--------------------~~-~~~---~-~~~~~------------------  100 (301)
                      ..||+|+......+ +|... .   .                    .. ..+   + +....                  
T Consensus       353 ~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (742)
T TIGR01299       353 FMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIW  432 (742)
T ss_pred             HcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHH
Confidence            67898863111000 00000 0   0                    00 000   0 00000                  


Q ss_pred             CChHHhhcChh---HHHHHHHHHhhHHHHHHHHHhHHHHHHHH----h-----------------CCCcc----------
Q 022198          101 IPWGLILSKPP---VWALIVSHFCHNWGTFILLTWMPTYYNQV----L-----------------HFNLT----------  146 (301)
Q Consensus       101 ~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~l~~~----~-----------------g~s~~----------  146 (301)
                      .+++++|+.|.   ++.+++..++..+++|++..|+|+++++.    +                 ++++.          
T Consensus       433 ~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (742)
T TIGR01299       433 GNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYD  512 (742)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccc
Confidence            02455666654   34456777888899999999999987641    0                 00000          


Q ss_pred             --------------------------------------------------------------------------------
Q 022198          147 --------------------------------------------------------------------------------  146 (301)
Q Consensus       147 --------------------------------------------------------------------------------  146 (301)
                                                                                                      
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  592 (742)
T TIGR01299       513 NDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDE  592 (742)
T ss_pred             cchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccch
Confidence                                                                                            


Q ss_pred             ---hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhh
Q 022198          147 ---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTD  222 (301)
Q Consensus       147 ---~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  222 (301)
                         .......+..++..+|.+++|+++||+|||+        . +..++++.+++...+....+....+.+ ...++...
T Consensus       593 ~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~--------~-l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~  663 (742)
T TIGR01299       593 GAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR--------M-LAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSI  663 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--------H-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence               0122344556888999999999999999762        1 122232233322222222222222221 11111111


Q ss_pred             hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH-hhcCCcccc
Q 022198          223 AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN-LFSTGEKVV  300 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~-~~~~~~~~~  300 (301)
                       ...+..+....|..| +.|+++.|+.++.+++|++++|.++|.+.+. +....|.+.+++.++++++.. +-+|+++++
T Consensus       664 -~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       664 -AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             -HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence             112234445567766 5799999999999999999999999998876 345566666666666544433 346666543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.89  E-value=5.6e-21  Score=176.21  Aligned_cols=267  Identities=18%  Similarity=0.123  Sum_probs=171.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+..+++.|++|+++|+++.++.+.+.++|..+|+.+++.+.+..|||+.|++.++..++.. +...+.|++++++++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  207 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLLRLPALPPPPQPRE  207 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhCCCCCCCCcccc
Confidence            45567889999999999999999999999999999999999999999999998665544432 22333444332111000


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      +..+           + .+..++.++++|.++...+..++.. ...+...|+|.|+++.+|+++.+.+++.....++..+
T Consensus       208 ~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~i  274 (417)
T PRK10489        208 HPLR-----------S-LLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAAL  274 (417)
T ss_pred             cchH-----------H-HHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHH
Confidence            0000           0 0113456788888776655544432 2456778999999988999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-C
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-R  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~  239 (301)
                      +.++.+++.||.+++        +.+. ...+..++........++......+ ...+.+.+ ...+...+..++..| +
T Consensus       275 g~~~~~~l~~~~~~~--------~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~  344 (417)
T PRK10489        275 GALTSGWLAHSARPG--------LLML-LSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDE  344 (417)
T ss_pred             HHHHHHHhhhccCcc--------hHHH-HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHH
Confidence            999999999974322        1111 1111111122112222233222222 11222221 111222344455555 5


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH-HHHHHHHh
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL-VGTAVWNL  292 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~-v~~~~~~~  292 (301)
                      .+|.+.|+.+...++|+.++|.+.|++.|..|....+...+++.+ ++.+....
T Consensus       345 ~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        345 MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999999999999999777777766554444 44444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.1e-21  Score=182.14  Aligned_cols=174  Identities=21%  Similarity=0.278  Sum_probs=144.3

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHH------hhhcCCchhHHhhhhhHHHHHHHHhhhccCCC
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL------IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP   74 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l------~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p   74 (301)
                      .|+...+++.||.++|||+.+|++++..++|+++|..++..+      ....||||.|++.|++.++..++.+...|++|
T Consensus       152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            388899999999999999999999999999999999999887      34689999999999999887666666788988


Q ss_pred             CCCCCCCHHHHHHH----HhccCCC--CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchh
Q 022198           75 AEDPQLRPAEKKLI----VSSCASK--EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTES  148 (301)
Q Consensus        75 ~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~  148 (301)
                      .+....+++|+...    ++++...  ++.+...+++.+++|..|...++.+|.....|++.+|+|.|+++..|+|..++
T Consensus       232 ~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a  311 (495)
T KOG2533|consen  232 SKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA  311 (495)
T ss_pred             hhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh
Confidence            86655666654321    1111111  11223356789999999999999999999999999999999998678999999


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198          149 GLFCVLPWLTMAFSANLGGWIADTLV  174 (301)
Q Consensus       149 ~~~~~~~~i~~~~g~~~~G~l~Dr~~  174 (301)
                      +++..+..++++++.+++|+++||..
T Consensus       312 ~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  312 NLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             ccccchHHhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999963

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=6.9e-21  Score=175.82  Aligned_cols=256  Identities=15%  Similarity=0.188  Sum_probs=156.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhh-ccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~~p~~~~~~   80 (301)
                      |....++.|++|+|+|+++.++...+..+|.++++.+.+.+.+.+|||+.|++. .+..+. .++++. .||+++.    
T Consensus       125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~-~~~~~~-~~~~~~~~p~~~~~----  198 (426)
T PRK12307        125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG-LLPVLL-VIYIRARAPESKEW----  198 (426)
T ss_pred             HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH-HHHHHH-HHHHHHHCCCChHH----
Confidence            456788999999999999999999999999999999999999999999999973 333332 222222 2222110    


Q ss_pred             CHHHHHHHHhccCCCCC---CCCCChHHhhcChhHHHHHHHH---HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198           81 RPAEKKLIVSSCASKEP---VKTIPWGLILSKPPVWALIVSH---FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL  154 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~  154 (301)
                        ++++. .++.++++.   ..+.++++++|+|.++......   ++.....+.+..|+|.|+++ +|+++.+.+.....
T Consensus       199 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~  274 (426)
T PRK12307        199 --EEAKL-SGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTA  274 (426)
T ss_pred             --HHhhh-hccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence              00000 000000000   0112467788888876543322   22222344578899999986 59999999988888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccCChHHHHHHHHHHHhhhhhh-hcchhhh
Q 022198          155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVDSPAMAVLCMACSQGTDAFS-QSGLYSN  232 (301)
Q Consensus       155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  232 (301)
                      ..++..++.++.|+++||++||+.        .. .+.+...+. ........+....+.....+.+..... .......
T Consensus       275 ~~~~~~~g~~~~g~l~dr~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (426)
T PRK12307        275 AAFGTVLGNIVWGLCADRIGLKKT--------FS-IGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKF  345 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHH--------HH-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHH
Confidence            889999999999999999986521        11 111111111 111111111211111111111111000 0111223


Q ss_pred             hhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198          233 HQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF  276 (301)
Q Consensus       233 ~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f  276 (301)
                      .+|..| +.+|++.|+.+..+++++.++|.+.|++.|+.|+....
T Consensus       346 ~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~  390 (426)
T PRK12307        346 LYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL  390 (426)
T ss_pred             HHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence            345545 67899999999999999999999999999997766543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.88  E-value=3e-20  Score=170.58  Aligned_cols=266  Identities=15%  Similarity=0.114  Sum_probs=162.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |+..+++.|++|+|||+++.++...+.++|.++++.+++.+.+. +|||.+|++.+++.++.... ....+|+++.+ +.
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~-~~  190 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPA-RP  190 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccc-cc
Confidence            56778999999999999999999999999999999999999885 59999999988776553322 22334322211 10


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH-HHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW-LTM  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~-i~~  159 (301)
                      +++.++         +  .+.++++++|||.++...+..++.+........+.+.++.+++|+++++.+++..... ++.
T Consensus       191 ~~~~~~---------~--~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~  259 (402)
T PRK11902        191 PRSLGE---------A--VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAAT  259 (402)
T ss_pred             cchhHH---------H--HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence            110000         0  0124678999999887766655555444444566777888889999999999875544 467


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhcc-CChHHHHHHHHH---HHhhhhhh-hcchhhhh
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHV-DSPAMAVLCMAC---SQGTDAFS-QSGLYSNH  233 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~  233 (301)
                      .++.+++|++.||+++|+.       ..... ......+........ ++..........   ..+..... ........
T Consensus       260 i~g~~~~g~l~~r~g~~~~-------l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  332 (402)
T PRK11902        260 IVGALAGGTLMVRLGLYRS-------LMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALC  332 (402)
T ss_pred             HHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999986621       11111 111111111111121 233222222111   11111111 11111222


Q ss_pred             hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       234 ~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      ++..|   ++..+..+....+++.+++.+.|.+.|+.||+..|...+.+.+++.+..
T Consensus       333 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        333 NRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             CCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            22222   3334444555556666666789999999899999988877777765543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=3.2e-21  Score=179.91  Aligned_cols=278  Identities=13%  Similarity=0.149  Sum_probs=173.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |....++.+|+| ++|+++.|+.+++.++|..+++++++.+.+.+|||++|++.+++.++..+.+....++.+++++..+
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  205 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS  205 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            445677889996 7999999999999999999999999999999999999999888765443222222221111000000


Q ss_pred             HHHHHHHHhccCC--------CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198           82 PAEKKLIVSSCAS--------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV  153 (301)
Q Consensus        82 ~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~  153 (301)
                      +++.+...+...+        ++..+..++ +++++|.++...+..++...+.+...+|+|.|+++ +|++..+++.+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~  283 (455)
T TIGR00892       206 KSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLS  283 (455)
T ss_pred             cccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHH
Confidence            0000000000000        000001123 47899998887776666667777888999999975 7999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhh
Q 022198          154 LPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSN  232 (301)
Q Consensus       154 ~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  232 (301)
                      +..++..++.+++|+++||...|+ +    ++...........+.........+.... +..+..+.+.+.. .+...+.
T Consensus       284 ~~~~~~~~~~~~~g~l~d~~~~~~-~----~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~-~~~~~~~  357 (455)
T TIGR00892       284 IIGFVDIFARPSCGLIAGLKWIRP-H----VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV-GALLFEV  357 (455)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCH-H----HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH-HHHHHHH
Confidence            889999999999999999742111 0    1111111111111111111122233222 2222222222211 1222333


Q ss_pred             hhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHH
Q 022198          233 HQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       233 ~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~  288 (301)
                      ..+. ++++++.+.|+.+...++|+.++|.+.|.+.|. ++|+..|.+.+++.+++.+
T Consensus       358 ~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       358 LMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            3344 456789999999999999999999999999998 4698888887766665543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.88  E-value=8.3e-21  Score=178.00  Aligned_cols=256  Identities=17%  Similarity=0.163  Sum_probs=169.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-CCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~-~~~   80 (301)
                      |...+++.|++|+|+|+++.+++..+..+|..+|+.+++++.+++|||++|++.++++++.........+|+++++ ++.
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENF  188 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCC
Confidence            5677899999999999999999999999999999999999999999999999977776554333333334332211 111


Q ss_pred             CHHHHHH------------HH----------------------------hccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198           81 RPAEKKL------------IV----------------------------SSCASKEPVKTIPWGLILSKPPVWALIVSHF  120 (301)
Q Consensus        81 ~~~~~~~------------~~----------------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  120 (301)
                      +......            ..                            .+..++++  ..+. +++|+|.++...+..+
T Consensus       189 d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~  265 (485)
T TIGR00711       189 DFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNP--LVDL-RLFKYRNFTIGCVYMS  265 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCC--ccCH-HHHcCCChHHHHHHHH
Confidence            1100000            00                            00001111  1223 4789998888777777


Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  200 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~  200 (301)
                      +.....++...++|.|+++.+|+|+.++++...+..++..++.++.|++.||+++|+        .+ ..+....++...
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~~-~~g~~~~~~~~~  336 (485)
T TIGR00711       266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK--------LV-TIGLILYAVGFY  336 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--------HH-HHHHHHHHHHHH
Confidence            777788888999999999999999999999999889999999999999999998652        11 112221221111


Q ss_pred             Hhh---cc-CChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          201 QLS---HV-DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       201 ~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      ...   .. .+..... .....+++.+....+.......+.++++++.+.++.+...++|+.+++.+.|.+.++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       337 WRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111   11 1222221 122223333222212122223344567899999999999999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=7.8e-20  Score=165.97  Aligned_cols=163  Identities=12%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.++.+.+..+|..+++.+++.+.+.+|||+.|++.+.+.++..+......+|+++++++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQP  177 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCC
Confidence            45668899999999999999999999999999999999999999999999998777765543333334444332211000


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      .+.          ++  ...++++++++|..+...+..++...+.+....|.|.++.+++|+++.+.+.+.....++..+
T Consensus       178 ~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~  245 (377)
T PRK11102        178 FHL----------RT--TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFV  245 (377)
T ss_pred             CCh----------HH--HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            000          00  011355688999888766666666667777888999999998999999999999888899999


Q ss_pred             HHHHHHHHHHHHHHc
Q 022198          162 SANLGGWIADTLVSK  176 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r  176 (301)
                      +.++.|++.||+++|
T Consensus       246 ~~~~~g~l~~r~g~~  260 (377)
T PRK11102        246 MTIINSRFVRRVGAL  260 (377)
T ss_pred             HHHHHHHHHHHhCHH
Confidence            999999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.88  E-value=6.9e-21  Score=173.89  Aligned_cols=268  Identities=13%  Similarity=0.078  Sum_probs=157.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--CchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ   79 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~   79 (301)
                      |...+++.|++|+|+|+++.++.+++..+|..+++.+++.+.+..|  ||+.|++.++..++. .+.....||+|+.+++
T Consensus       119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~  197 (405)
T TIGR00891       119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEK  197 (405)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHH
Confidence            5567889999999999999999999999999999999999988876  999999754444332 2333344554321111


Q ss_pred             CCHHH-HHHHHhccCCCCCCCCCChH----Hhh-cChh----HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198           80 LRPAE-KKLIVSSCASKEPVKTIPWG----LIL-SKPP----VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG  149 (301)
Q Consensus        80 ~~~~~-~~~~~~~~~~~~~~~~~~~~----~ll-~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~  149 (301)
                      .++++ .+...++...+++..+.+.+    ... +.++    +........+.+...+...+|+|.|+++++|+|..+.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  277 (405)
T TIGR00891       198 HAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA  277 (405)
T ss_pred             hhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH
Confidence            00000 00000000000000000000    000 1111    11122222333444556778999999999999999999


Q ss_pred             hHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcc
Q 022198          150 LFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSG  228 (301)
Q Consensus       150 ~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  228 (301)
                      .+.....+++.++.++.|+++||+++|+..        ...................+....... ...+..... ..+.
T Consensus       278 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  348 (405)
T TIGR00891       278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAY--------VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG-IWGI  348 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchhhh--------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHcc-chhh
Confidence            998888999999999999999999876321        111111101111111122222111111 111111111 1111


Q ss_pred             hhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHH
Q 022198          229 LYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVS  279 (301)
Q Consensus       229 ~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~  279 (301)
                      ......|.. ++.++++.|+.+..+++++.++|.+.|++.|+.| ++..+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            222334444 5689999999999999999999999999999855 77665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.87  E-value=8.4e-21  Score=176.44  Aligned_cols=284  Identities=15%  Similarity=0.091  Sum_probs=166.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH---HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS---PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-   77 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~---~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~-   77 (301)
                      |....+++|++|+|+|++++++.+.+..+|..+++.++   ....+..|||++|++.++..++. .+.....+|+|+.. 
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~  224 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLV  224 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHH
Confidence            45678999999999999999999999999999999998   66667889999999855444333 33334456665311 


Q ss_pred             -CCCCHHHHHHHHhccCCCC-C-------------------CCCCChHHhhcC------hhHHHHHHHHHhhHHHHHHHH
Q 022198           78 -PQLRPAEKKLIVSSCASKE-P-------------------VKTIPWGLILSK------PPVWALIVSHFCHNWGTFILL  130 (301)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~ll~~------~~~~~~~~~~~~~~~~~~~~~  130 (301)
                       ++..+++++...+....++ .                   ..+..++++++.      +.++...+..+..........
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (481)
T TIGR00879       225 GKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM  304 (481)
T ss_pred             HcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehH
Confidence             0001111110000000000 0                   001112333332      122222232333222334456


Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH--HhhccC--
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVD--  206 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  206 (301)
                      .|.|.+++ ++|++..+++....+..++..++.+++|+++||++||+....      .........+...  ......  
T Consensus       305 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  377 (481)
T TIGR00879       305 YYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI------GAAGMAICLFVLGILGASFVTGS  377 (481)
T ss_pred             HHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHHHHHHHHHHHHHhhcccCCc
Confidence            67776665 679999888888888889999999999999999987632111      0011111111111  011111  


Q ss_pred             ----ChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198          207 ----SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG  281 (301)
Q Consensus       207 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~  281 (301)
                          .............+.+....+.......|..| +.++.+.++.+...++++.++|.+.|++.++.+|...|.+.++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~  457 (481)
T TIGR00879       378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG  457 (481)
T ss_pred             ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence                11111111111111111111222333355555 5799999999999999999999999999998889888888877


Q ss_pred             HHHHHHHHHHhh
Q 022198          282 LYLVGTAVWNLF  293 (301)
Q Consensus       282 ~~~v~~~~~~~~  293 (301)
                      +.+++++....+
T Consensus       458 ~~~~~~i~~~~~  469 (481)
T TIGR00879       458 LNVLGLIFVYFF  469 (481)
T ss_pred             HHHHHHHHHhee
Confidence            777776665444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=7.8e-20  Score=171.14  Aligned_cols=260  Identities=12%  Similarity=0.084  Sum_probs=165.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |....++.|++|+++|+++.++.+.+.++|..+|+++++.+.+.+|||+.|++..++..+.........++++++..+.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  196 (471)
T PRK10504        117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFD  196 (471)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCC
Confidence            56678899999999999999999999999999999999999999999999998766654443333333333322221221


Q ss_pred             HHHHHH---------------------------------------HHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhh
Q 022198           82 PAEKKL---------------------------------------IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH  122 (301)
Q Consensus        82 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  122 (301)
                      ......                                       ..++...++  ...+. +++|||+++......++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~~~~l~~~~~~  273 (471)
T PRK10504        197 LSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR--ALFSL-KLFRTRTFSLGLAGSFAG  273 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC--CccCH-HHhcccchHHHHHHHHHH
Confidence            110000                                       000111111  12344 489999998877777776


Q ss_pred             HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hHHHHHHHHH
Q 022198          123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG-FLGPAFFLTQ  201 (301)
Q Consensus       123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~  201 (301)
                      ..+......+.|.|++..+|.++.++++...+..++..++.++.|+++||+++|+.       ...... ..........
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV-------LVATTLGLALVSLLFML  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHHHHHh
Confidence            66666677889999998889999999998888888888888999999999986521       111111 1111111111


Q ss_pred             hhccCChHHH-HHHHHHHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          202 LSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       202 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      .....+.... +.+...+.+.+.. .+...... ...+++.++.+.++.+...++|+++++.+.|.+++..++
T Consensus       347 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        347 VALLGWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111222111 1111112222111 11112222 234457889999999999999999999999999887444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.87  E-value=7.1e-22  Score=176.91  Aligned_cols=245  Identities=25%  Similarity=0.449  Sum_probs=158.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+..+++.|++|+|||+++.++.+.+.++|..+++.+++.+.+.+|||++|++.+++.++..++.....+++|+++++.+
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~  183 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES  183 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc
Confidence            56778999999999999999999999999999999999999999999999999888877654432233333333222111


Q ss_pred             HHHHHHHHhccCCCCCCCCCC-hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCC-cchhhhHhhhhHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN-LTESGLFCVLPWLTM  159 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s-~~~~~~~~~~~~i~~  159 (301)
                      +++++.       +++....+ +++++++|.+|......++.....+....|+|.|+++++|++ ..+.+.+.....+.+
T Consensus       184 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  256 (352)
T PF07690_consen  184 PKESES-------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVG  256 (352)
T ss_dssp             STTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHH
T ss_pred             cccccc-------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHH
Confidence            111100       00000112 567888887775555555555577779999999989999999 789998888888999


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC-
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA-  237 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (301)
                      .++.++.|+++||+++|+      +............+........++..... .+...+++.+ ...+.......+.. 
T Consensus       257 ~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~  329 (352)
T PF07690_consen  257 IIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFG-IVFPILFSLIQELVP  329 (352)
T ss_dssp             HHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence            999999999999986431      11111111111111111111111222222 2222222222 12233344445555 


Q ss_pred             CCchHHHHHHHhHHHhhHHhHHH
Q 022198          238 PRYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       238 p~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                      ++++|++.|+.+...++++.++|
T Consensus       330 ~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  330 PEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC
Confidence            47899999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.87  E-value=4.3e-20  Score=169.33  Aligned_cols=269  Identities=16%  Similarity=0.180  Sum_probs=165.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |....++.+++|+++|+++.++.+.+..+|..+++++++.+.+.+|||+.|++.+++.++.........+|+++..+  +
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  202 (408)
T PRK09874        125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVS--K  202 (408)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccccc--c
Confidence            45567888999999999999999999999999999999999999999999998777665543333333444322110  1


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHH-HHHHhhHHHHHHHHHhHHHHHHHHhCCCcch----hhhHhhhhH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI-VSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPW  156 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~----~~~~~~~~~  156 (301)
                      +++.+             ..+..+.+++|+.+... ...++..........++|.|+++..+ +..+    .+.+.....
T Consensus       203 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~  268 (408)
T PRK09874        203 KEMLH-------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG-NVSNIAFISGMIASVPG  268 (408)
T ss_pred             hhhhH-------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence            10000             00112355666655433 22233333444567888999887544 3332    344455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhc
Q 022198          157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++..++.+..|+++||+++|+..       .  .......+.........++.... .....+.+.+.. .+.......+
T Consensus       269 l~~~~~~~~~g~l~dr~g~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~  338 (408)
T PRK09874        269 VAALLSAPRLGKLGDRIGPEKIL-------I--TALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGAL-LPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHhccccchhH-------H--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhh-HHHHHHHHHH
Confidence            78888899999999999876321       1  11111111111111222332222 112222222211 1222222233


Q ss_pred             -cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCC
Q 022198          236 -IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG  296 (301)
Q Consensus       236 -~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~  296 (301)
                       .+++++|...++.+...++|..++|.+.|.+.|+.|++..|.+.+++.+++.+......++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3456789999999999999999999999999999889999999888877776655444333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.86  E-value=1.4e-19  Score=165.35  Aligned_cols=261  Identities=14%  Similarity=0.169  Sum_probs=170.8

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      ...++..|+.++|+++...+....+..+|.++|....+++.+.+|||.+|++.+.+.++..+..+. .+|+++++++   
T Consensus       117 ~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~-~~~~~~~~~~---  192 (390)
T TIGR02718       117 ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW-LKDRAVASPE---  192 (390)
T ss_pred             HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCCCcCccc---
Confidence            455677888999999999999999999999999999999999999999999988877654333322 2222211110   


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH-HHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW-LTMAF  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~-i~~~~  161 (301)
                      +++          +  +..++++++|+|..+......++...+.....+|.|.|++| +|+|+++.+.+..... ....+
T Consensus       193 ~~~----------~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~  259 (390)
T TIGR02718       193 APL----------A--RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLL  259 (390)
T ss_pred             cch----------h--hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHH
Confidence            000          0  01245678999988877777677666777788899999976 6999999999877665 46677


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH-HHHHHHHHhhc---cCChHHHHHHHHH-HHhhhhhhhcchhhh-hhc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFL-GPAFFLTQLSH---VDSPAMAVLCMAC-SQGTDAFSQSGLYSN-HQD  235 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  235 (301)
                      +.+++|++.||+++|+..       ....... ...+.......   ..++.....+... .+..+ ......+.. ...
T Consensus       260 g~~~~g~l~~r~g~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  331 (390)
T TIGR02718       260 GCGGGAWLVRRAGLWRTF-------ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG-ITSVAIYTAFMRF  331 (390)
T ss_pred             HHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            899999999999876321       1111100 01111111111   1122221111111 11111 111112222 233


Q ss_pred             cCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198          236 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       236 ~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~  288 (301)
                      ..+ +++++..+..+...++|+.++|.+.|++.|+.|++..|...+++.+++.+
T Consensus       332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       332 AGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             hCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            344 78899999999999999999999999999998898888887776666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.86  E-value=1.1e-19  Score=165.68  Aligned_cols=260  Identities=10%  Similarity=0.019  Sum_probs=166.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |.+.++..++  +|||+++.|....+.++|.++|+++++.+.+.+|||..|++...+.++. .... ..+|+++++++ +
T Consensus       113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~-~~~~~~~~~~~-~  187 (382)
T TIGR00902       113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGF-LIKPTIPPKDA-I  187 (382)
T ss_pred             hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHH-HcCCCCCCCcc-c
Confidence            5566766554  5789999999999999999999999999999999999998865543222 2222 22332211110 0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++ +        +++  +..++++++|+|++|...+..++...+.....+|.|.|+++ +|.|..+.+.......++..+
T Consensus       188 ~~-~--------~~~--~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~  255 (382)
T TIGR00902       188 PE-D--------ESQ--GDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEII  255 (382)
T ss_pred             cc-c--------ccc--cchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence            00 0        001  11246789999999988877777777788889999999975 899999999987776777777


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~  240 (301)
                      +.++.+++.||++.|+        .+ ..+.+...+........+++...+.. ..-+..++.+. +......++.+++.
T Consensus       256 ~~~~~~~l~~r~g~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~~~~~  325 (382)
T TIGR00902       256 IFAFSNKLFQNCSARD--------LL-LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQPGSE  325 (382)
T ss_pred             HHHHhHHHHhhCCHHH--------HH-HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhh
Confidence            8888888888887542        11 12222222222222223333322221 11122222221 22223334445567


Q ss_pred             hHHHHHHHhH-HHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          241 SGVLLGLSNT-AGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       241 ~g~a~g~~~~-~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ++++.++.+. ...+|..++|.+.|++.|+.|. ..|..++++.+++++.
T Consensus       326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            7888888764 4558889999999999999775 6677777766666444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.86  E-value=1.6e-19  Score=165.44  Aligned_cols=256  Identities=18%  Similarity=0.150  Sum_probs=160.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+..+++.|++|+|+|++++++.+.+.++|.++|+++++.+.+.+|||..|++..++.++.. ...+   +.|+++++ +
T Consensus       131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~  205 (399)
T PRK05122        131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL-LLAR---PRPAVPPV-K  205 (399)
T ss_pred             chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHh---cCCCCCCC-C
Confidence            56677889999999999999999999999999999999999999999999987666554322 2222   22221111 0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                       ++               +.++++.+|+  .+.......+...++....+|+|.|+++ .|+  .+.+.......++..+
T Consensus       206 -~~---------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~  264 (399)
T PRK05122        206 -GE---------------RLPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVG  264 (399)
T ss_pred             -cc---------------chhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHH
Confidence             00               0123333332  2222222233344566677899999875 466  3455556667788889


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhh-hhccCCC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSN-HQDIAPR  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~p~  239 (301)
                      +.++.|++.||+++|+        ... ......++........++....+. ....+.+.+.. .+..... ....+++
T Consensus       265 ~~~~~g~l~~r~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~  334 (399)
T PRK05122        265 ARLLFGNLINRLGGLR--------VAI-VSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQ  334 (399)
T ss_pred             HHHHHHHHHHHhccHH--------HHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHH
Confidence            9999999999987542        111 111111111111112223322221 12222222211 1111122 2334557


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ++|.+.|+.+...++|+.++|.+.|++.|+.|++..|.+.+++.+++.+.....
T Consensus       335 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        335 NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999889999998888777776555444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=1.8e-20  Score=169.31  Aligned_cols=243  Identities=16%  Similarity=0.134  Sum_probs=148.5

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh----------hcCCchhH-HhhhhhHHHHHHHHhhhcc
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVF-YSFGSLGTVWFTVWLSKAH   71 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~----------~~gWR~~F-~~~g~l~~~~~~~~~~~~~   71 (301)
                      ...++++|++|+|+|+++.++.....++|..+++.+++.+.+          ..+||+.| +..+++..+...+.....+
T Consensus       110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  189 (366)
T TIGR00886       110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA  189 (366)
T ss_pred             hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence            456789999999999999999998888888888777766654          34899999 4445544443333333345


Q ss_pred             CCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198           72 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF  151 (301)
Q Consensus        72 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~  151 (301)
                      |+|+++++.++.+.   .++....+.....+..+++++|++|...+..++.....+...+|.|.|+++.+|+|+.+++.+
T Consensus       190 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  266 (366)
T TIGR00886       190 DTPPGKPATGKLSF---KGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAY  266 (366)
T ss_pred             cCCcccccchhccc---ccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            55532211000000   000000000001135568899988887777666655677888999999999999999999988


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC--ChHHHHHH-HHHHHhhhhhhhcc
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLC-MACSQGTDAFSQSG  228 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~  228 (301)
                      ..+..+++.++.+++|+++||+++|+.       .....................  +....+.. .......+ ...+.
T Consensus       267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~  338 (366)
T TIGR00886       267 ASLGGLLGSLARPLGGAISDRLGGARK-------LLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG-AGNGS  338 (366)
T ss_pred             HHHHHHHHHHHhhccchHHHhhccchh-------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-cccch
Confidence            888888999999999999999987631       111111111111111111221  22222111 11111111 22233


Q ss_pred             hhhhhhccCCCchHHHHHHHhHHHhhHH
Q 022198          229 LYSNHQDIAPRYSGVLLGLSNTAGVLAG  256 (301)
Q Consensus       229 ~~~~~~~~~p~~~g~a~g~~~~~~~lgg  256 (301)
                      .++...+..|+++|++.|+.+..+++|+
T Consensus       339 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       339 TFALVPHIFRRATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             hhhcchhhchhhcccHHHHHHHhccCCC
Confidence            4455556678899999999999888764

>TIGR01272 gluP glucose/galactose transporter

Probab=99.86  E-value=2.7e-19  Score=158.61  Aligned_cols=258  Identities=12%  Similarity=0.076  Sum_probs=166.7

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh----------------hcCCchhHHhhhhhHHHHHHH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------------RFGWPSVFYSFGSLGTVWFTV   65 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~----------------~~gWR~~F~~~g~l~~~~~~~   65 (301)
                      ++++.++++..|+|++++.+++.+....+|..+||.+++.+..                ...||++|++.+.+..+..++
T Consensus        29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999998773                258999999766665444333


Q ss_pred             HhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH--hCC
Q 022198           66 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHF  143 (301)
Q Consensus        66 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~--~g~  143 (301)
                      +.+ . +.|+.+++  ++++.   .   .++   +.+.++++|+|..+...+..++....--+...|+|+|+.+.  +|+
T Consensus       109 ~~~-~-~~p~~~~~--~~~~~---~---~~~---~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~  175 (310)
T TIGR01272       109 FAF-L-PLPELQEA--DVARV---S---SGD---TTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL  175 (310)
T ss_pred             HHH-c-cCCCCCcc--ccccc---c---ccc---ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            332 2 22222111  11000   0   000   01123477888888777777766556777899999999854  699


Q ss_pred             CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhh
Q 022198          144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA  223 (301)
Q Consensus       144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (301)
                      +++++++.......++.+|.+++++++||+++|+.        +. ......++................+...+++.+ 
T Consensus       176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~--------l~-~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s-  245 (310)
T TIGR01272       176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY--------LA-FNAFLAVLLSIGAALTHGYVAMWFVLALGLFNS-  245 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999986531        11 111111111111111112211122222222222 


Q ss_pred             hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198          224 FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY  283 (301)
Q Consensus       224 ~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~  283 (301)
                      ...+..++...+..|+..+.+.++. ..+.+|+++.|.+.|.+.|+.|.+..|++...++
T Consensus       246 ~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       246 IMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            1223334444444566666677764 6788999999999999999877887777544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK12382 putative transporter; Provisional

Probab=99.86  E-value=1.5e-19  Score=165.18  Aligned_cols=258  Identities=14%  Similarity=0.114  Sum_probs=159.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+..+++.|++|+|||++++++.+.+.++|..+|+++++.+.+.+|||+.+.+..++.++. ....+..+|+++   + +
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~-~  205 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA-WAFNGTVRKVPA---H-A  205 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHhccCCCC---C-c
Confidence            4566788999999999999999999999999999999999999999999888654444332 122222222111   0 0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++           +     .+.++.+|  ..|...+..++...+......|.|.|+++ .|++  +.+.......++..+
T Consensus       206 ~~-----------~-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~  264 (392)
T PRK12382        206 GE-----------R-----PSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVL  264 (392)
T ss_pred             cc-----------C-----chHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHH
Confidence            00           0     01122221  12221122223334566677899999875 4665  345555556677888


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhh-hhccCCC
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSN-HQDIAPR  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~p~  239 (301)
                      +.++.|++.||+++|+....       ...........  ....++......+.. .+.+.+. ..+..... .+..+++
T Consensus       265 ~~~~~g~l~~r~g~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~  334 (392)
T PRK12382        265 MRVLFGWMPDRFGGVKVAIV-------SLLVETVGLLL--LWLAPTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQ  334 (392)
T ss_pred             HHHHHHHHHHhcCCCeehHH-------HHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHH
Confidence            99999999999987643211       11111111111  112223322222211 1222211 11222222 2334567


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  295 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  295 (301)
                      ++|++.|+.+...++++.++|.+.|++.|+.||+..|.+.+++.+++.+....+.+
T Consensus       335 ~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        335 VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999999999988999999988888877766554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=1.4e-19  Score=165.82  Aligned_cols=279  Identities=11%  Similarity=-0.005  Sum_probs=175.0

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      .|+..+++.|++|+|||+++.|+++....+|.++|+.+++.+.+. .|+..|.+.+.+.++. .+.....||+|+++++.
T Consensus       106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~  183 (393)
T PRK11195        106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQ  183 (393)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccccc
Confidence            378889999999999999999999999999999999999999885 4888887755443222 22223445544322111


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~  160 (301)
                      ++++.+...+ .       ...++.++++|.++.......+...........+|.|+++.+|+|+.+.|++.....+++.
T Consensus       184 ~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i  255 (393)
T PRK11195        184 SWNPIALLRD-F-------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIA  255 (393)
T ss_pred             CCCHHHHHHH-H-------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence            1111110000 0       0123567888877655444333333445556677888998999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCCC
Q 022198          161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPR  239 (301)
Q Consensus       161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~  239 (301)
                      +++++.+++.||.++|+.        + ..++... .........+++...+.+. ..+.+.+.+. ....+..++..|+
T Consensus       256 ~g~~~~~~l~~~~~~~~~--------~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~  324 (393)
T PRK11195        256 VGAGAAARLVTLETVLRV--------L-PAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHV  324 (393)
T ss_pred             HHHHHHHHHhcCCcccch--------H-HHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcc
Confidence            999999999887654421        1 1111111 1111111222232222222 2223222222 2233334455554


Q ss_pred             -c-hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh---cCCccccC
Q 022198          240 -Y-SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF---STGEKVVD  301 (301)
Q Consensus       240 -~-~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~---~~~~~~~~  301 (301)
                       . +|.+.++.|...+++..++..+.+.+ +..|.+..+.+....++++......|   ++.+|.+|
T Consensus       325 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK11195        325 LVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQFD  390 (393)
T ss_pred             cccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence             3 69999999999999999999988855 66678888888777777776666565   44445444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.85  E-value=1.2e-19  Score=170.03  Aligned_cols=278  Identities=15%  Similarity=0.109  Sum_probs=155.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS   73 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~   73 (301)
                      |.+.++++|++|+|+||+++++.+.+..+|..+++.++..+.        +.+|||++|++.+++.++.. +.....||+
T Consensus       139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s  217 (479)
T PRK10077        139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPET  217 (479)
T ss_pred             hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCC
Confidence            667889999999999999999999999999999877765543        46799999998776665543 334456777


Q ss_pred             CCCCCCC-CHHHHHHHHhccCCCCC-C-CCCChHHhhcC-----hhHH------HH---HHHHHhhHHHHHHHHHhHHHH
Q 022198           74 PAEDPQL-RPAEKKLIVSSCASKEP-V-KTIPWGLILSK-----PPVW------AL---IVSHFCHNWGTFILLTWMPTY  136 (301)
Q Consensus        74 p~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~-----~~~~------~~---~~~~~~~~~~~~~~~~wlp~~  136 (301)
                      |+...+. ++++.+...++..+.+. . ...+.++.+++     +..+      ..   ....+....+.+...+|.|.+
T Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  297 (479)
T PRK10077        218 PRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEI  297 (479)
T ss_pred             cHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            7531111 11111111110000000 0 00011111110     1110      00   011112222344556777887


Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH---HHHHhhccCCh-HHHH
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF---FLTQLSHVDSP-AMAV  212 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~  212 (301)
                      ++ +.|++..+..+......+...++.+++|+++||++||..        + ..+.+..++   .+......... ....
T Consensus       298 ~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~--------~-i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        298 FK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL--------Q-IIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             HH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH--------H-HHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            75 569998878877777788899999999999999986621        1 111111111   11111111111 1221


Q ss_pred             HHHHH-HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhh------hcccCcchHHHHHHHHHHH
Q 022198          213 LCMAC-SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGY------ILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       213 ~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~------l~~~~~~~~~f~~~~~~~~  284 (301)
                      .++.. +.++.....+..+....|..| +.|+.+.|+.+..+++++.+++.+.+.      +.|+.++...|.+.++..+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence            12111 111111111223444556655 689999999999999999988666554      4456667777777666555


Q ss_pred             HHHHHH
Q 022198          285 VGTAVW  290 (301)
Q Consensus       285 v~~~~~  290 (301)
                      ++++..
T Consensus       448 ~~~~~~  453 (479)
T PRK10077        448 LAALFM  453 (479)
T ss_pred             HHHHHH
Confidence            554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.85  E-value=1e-18  Score=159.85  Aligned_cols=249  Identities=12%  Similarity=0.076  Sum_probs=161.3

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      ....+..|++++++|+++.++.+.+..+|..+++.+++.+.+.+|||++|++.+++.++.........||+++++++  +
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  193 (394)
T PRK11652        116 MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR--R  193 (394)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc--h
Confidence            34567789999999999999999999999999999999999999999999987776655433333344554322110  0


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g  162 (301)
                      ++              .+.++++++|+|.+|...+..++...+...+..+.|.++++.+|+|..+.++......++..++
T Consensus       194 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g  259 (394)
T PRK11652        194 TR--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG  259 (394)
T ss_pred             hH--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            00              0124567889998887655555544455556778889999889999999998877777788888


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCC
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPR  239 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~  239 (301)
                      ..+.+++.||.+++        ............+....  .....+....... ...+.+.+ ...+...+...+..|+
T Consensus       260 ~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~  330 (394)
T PRK11652        260 AWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFPY  330 (394)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Confidence            88888888887632        11111111111111111  1111222222211 11122222 1223334444556678


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF  276 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f  276 (301)
                      ++|++.++.+....+|+.+++.+.|.+.++..+....
T Consensus       331 ~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~  367 (394)
T PRK11652        331 LAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGL  367 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence            8899999999999999999999999987775444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.85  E-value=6.9e-20  Score=172.48  Aligned_cols=271  Identities=13%  Similarity=0.131  Sum_probs=152.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |....++.|++|+|+|+++.++...+.++|..+++.+.+.+.+.+|||+.|++ +.+..+...+.....||+++..++.+
T Consensus       127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~~~~~~~~  205 (496)
T PRK03893        127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAEDWKEKHA  205 (496)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCchhhhhhcc
Confidence            45667899999999999999999999999999999999999999999999987 44433332222223343322110000


Q ss_pred             HH-H-HHHHHhccCCCCCCCCCC--------hHHhhc------------------------------C-hhHHHHHHHHH
Q 022198           82 PA-E-KKLIVSSCASKEPVKTIP--------WGLILS------------------------------K-PPVWALIVSHF  120 (301)
Q Consensus        82 ~~-~-~~~~~~~~~~~~~~~~~~--------~~~ll~------------------------------~-~~~~~~~~~~~  120 (301)
                      ++ + ++........++......        ....+.                              + +.........+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (496)
T PRK03893        206 GKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVL  285 (496)
T ss_pred             ccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            00 0 000000000000000000        000000                              0 00000000111


Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH-
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL-  199 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~-  199 (301)
                      +.....+....|+|.|+++++|++..+++.+.....++..++.+++|+++||+++|+.        ......+...... 
T Consensus       286 ~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~--------~~~~~~~~~~~~~~  357 (496)
T PRK03893        286 FAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA--------YVCSLLISQLLIIP  357 (496)
T ss_pred             HHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHHH
Confidence            1111112356899999998999999999999999999999999999999999986521        1111111111111 


Q ss_pred             HHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHH
Q 022198          200 TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKV  278 (301)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~  278 (301)
                      .......+......+.......+...........++..| +.+|++.++.+..+++|+.++|.+.|++.|+.|+...+..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~  437 (496)
T PRK03893        358 VFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALAS  437 (496)
T ss_pred             HhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHH
Confidence            111111111111111111001111111112223345544 6799999999999999999999999999999888877655


Q ss_pred             HHH
Q 022198          279 SVG  281 (301)
Q Consensus       279 ~~~  281 (301)
                      .+.
T Consensus       438 ~~~  440 (496)
T PRK03893        438 LSF  440 (496)
T ss_pred             HHH
Confidence            443

>TIGR00896 CynX cyanate transporter

Probab=99.85  E-value=2.5e-19  Score=161.63  Aligned_cols=237  Identities=12%  Similarity=0.104  Sum_probs=151.9

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc--CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~--gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      ....++.|++| ++|+++.++++.+.++|..+++.+++.+.+..  +||+.|...+.+.++....++   ++.++++++ 
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~-  181 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAA-  181 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCC-
Confidence            44567788886 68999999999999999999999998888765  399999876655443222222   222111100 


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~  160 (301)
                         +          ++. .+.+.++++|+|..|...+..++....++...+|+|.|+++ +|+|..+.+.+.....++..
T Consensus       182 ---~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i  246 (355)
T TIGR00896       182 ---N----------QTT-TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQA  246 (355)
T ss_pred             ---C----------CCC-CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence               0          000 01134568899998877666666666788889999999975 69999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH--HHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhh-hccC
Q 022198          161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF--FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIA  237 (301)
Q Consensus       161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  237 (301)
                      ++.++.|+++||+++|+       +... ......++  ....+... +... ......+.+.+.. .+...+.. .+..
T Consensus       247 ~~~~~~g~l~dr~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~g~~~g~~-~~~~~~~~~~~~~  315 (355)
T TIGR00896       247 ASALLIPALARRVKDQR-------GIVA-VLAVLQLVGLCGLLFAPM-HGLW-AWALVLGLGQGGA-FPLALTLIGLRSR  315 (355)
T ss_pred             HHHHhHHHHHhhhccch-------HHHH-HHHHHHHHHHHHHHHhhh-hHHH-HHHHHHHHhhhhH-hHHHHHHHHHhcc
Confidence            99999999999995442       1111 11111111  11111111 1111 1112222222211 11112221 2222


Q ss_pred             -CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198          238 -PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG  270 (301)
Q Consensus       238 -p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~  270 (301)
                       +++++...++.+..+++++.++|.+.|++.|+.
T Consensus       316 ~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       316 QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             356788889999999999999999999999983

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=7.4e-19  Score=161.17  Aligned_cols=246  Identities=13%  Similarity=0.143  Sum_probs=159.3

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA   83 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~   83 (301)
                      ..+++.|++|+++++++.+..+....+|..+++.+++.+.+.+|||++|++.+.+.++..+... ..+|+++++   +++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~  190 (401)
T PRK11043        115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPSKKAR---KQS  190 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCCCCcc---ccc
Confidence            4567899999999999999999999999999999999999999999999987777665433332 233332211   000


Q ss_pred             HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198           84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~  163 (301)
                      +              ++.++++++|+|+.+...+...+....++...+|.|.|+++ +|+|+.+.++......++..+|.
T Consensus       191 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~  255 (401)
T PRK11043        191 Q--------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG  255 (401)
T ss_pred             h--------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH
Confidence            0              01245678899988766555555555667788999998864 79999999987777778888999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH-HHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCch
Q 022198          164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLG-PAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRYS  241 (301)
Q Consensus       164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~  241 (301)
                      ++++++.||+++|+..     +.......+. ..+.........+....+. ....+.+.+.. .+.......+..|+++
T Consensus       256 ~~~~~l~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  329 (401)
T PRK11043        256 YGCRAALQKWGGEQLL-----PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI-YPIVVAQALRPFPQAT  329 (401)
T ss_pred             HHHHHHHHHcCHHHHH-----HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCcccC
Confidence            9999999998765211     1111111111 1111111111222222211 11112222211 1222222234457789


Q ss_pred             HHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198          242 GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD  274 (301)
Q Consensus       242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~  274 (301)
                      |.+.|+.+..++.++..++.+.|.+.|......
T Consensus       330 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        330 GKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            999999999999999999999999988643433

>TIGR00895 2A0115 benzoate transport

Probab=99.85  E-value=2.6e-19  Score=162.80  Aligned_cols=255  Identities=23%  Similarity=0.327  Sum_probs=157.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+.+|||..|++.+.+..+...+.....+|+|+...+.+
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR  203 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC
Confidence            56778999999999999999999999999999999999999999999999998766655443343444555443211111


Q ss_pred             HHHHHH----HHhc----c---CCCCCC----CCCChHHhhcCh---hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC
Q 022198           82 PAEKKL----IVSS----C---ASKEPV----KTIPWGLILSKP---PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF  143 (301)
Q Consensus        82 ~~~~~~----~~~~----~---~~~~~~----~~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~  143 (301)
                      +++.+.    ...+    .   .++++.    .+..++.+++++   ..+..++..++.....+...+|+| ++.+++|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~  282 (398)
T TIGR00895       204 PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGF  282 (398)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Confidence            111100    0000    0   000000    011122233333   233344445555667777889999 66667899


Q ss_pred             CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhh
Q 022198          144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTD  222 (301)
Q Consensus       144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  222 (301)
                      +..+.+.......++..++.++.|+++||+++|  ..      .. .................+..... .....+.+.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPR--VT------AL-LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--HH------HH-HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            999999999888999999999999999999765  11      11 11111111111111122232222 2222222222


Q ss_pred             hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          223 AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                       ...+...+...+..| +.++.+.|+.+..+++++.++|.+.|+++
T Consensus       354 -~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll  398 (398)
T TIGR00895       354 -GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL  398 (398)
T ss_pred             -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence             112233444455544 68999999999999999999999999863

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.85  E-value=5.3e-19  Score=162.34  Aligned_cols=269  Identities=11%  Similarity=0.087  Sum_probs=160.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+..+++.|++|+|+|+++.|+.+...++|..+|+++++++. .+|||++|++.+.+.++..+......+| +++++  +
T Consensus       118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~-~~~~~--~  193 (400)
T PRK11646        118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA-YKLST--V  193 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc-ccccc--c
Confidence            556788999999999999999999999999999999999998 7899999998776655433332233332 11110  0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++             + .+.++++++|+|+++...+..+...........++|.|+++..+ ++.+.+++.....++...
T Consensus       194 ~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~  258 (400)
T PRK11646        194 RT-------------P-VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLT  258 (400)
T ss_pred             ch-------------h-hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHH
Confidence            00             0 01145678899888765544443333334456789999987644 778888877666665555


Q ss_pred             HHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CC
Q 022198          162 SANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-AP  238 (301)
Q Consensus       162 g~~~~G~l~Dr-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p  238 (301)
                      +....+++.|| ++.+       +...  ..+...++........++....+.. ...+.+.+ ...+.......+. ++
T Consensus       259 ~~~~~~~~~~~r~~~~-------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~  328 (400)
T PRK11646        259 LLYPIARWSEKRFRLE-------HRLM--AGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSI-IAEPARETLSASLADA  328 (400)
T ss_pred             HHHHHHHHHHHhcchh-------HHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCc
Confidence            55444555554 3222       1111  1111111111111222222222211 11112221 1112223333444 45


Q ss_pred             CchHHHHHHHhHHHhhHHhHHHhHhhhhcccC---c-chHHHHHHHHHHHHHHHHHHhhcCCccc
Q 022198          239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG---S-WDDVFKVSVGLYLVGTAVWNLFSTGEKV  299 (301)
Q Consensus       239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~---~-~~~~f~~~~~~~~v~~~~~~~~~~~~~~  299 (301)
                      +++|.+.|+.+....+|+.++|.+.|++.|+.   + ....+...+...+++++......+++|+
T Consensus       329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (400)
T PRK11646        329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQKRI  393 (400)
T ss_pred             ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            78999999999999999999999999999983   2 2345555555555555555444555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.84  E-value=1.3e-18  Score=160.33  Aligned_cols=259  Identities=9%  Similarity=-0.004  Sum_probs=159.8

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA   83 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~   83 (301)
                      ...++.|++|+++|++++++++.+..+|..+|+.+++.+.+.+|||++|++.++++++..+......||+++++++ +.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~-~~~  203 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV-PFS  203 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC-CCC
Confidence            4567889999999999999999999999999999999999999999999998887766543333344554321100 000


Q ss_pred             HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198           84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~  163 (301)
                      .+.            ...++++++|||.+|...+..++.....+.+..+.|.++++.+|+|+.+.++.......+..+++
T Consensus       204 ~~~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~  271 (413)
T PRK15403        204 AKS------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN  271 (413)
T ss_pred             hHH------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            000            01145678999999988777776667778888899999999999999999998877777777777


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCCCchH
Q 022198          164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPRYSG  242 (301)
Q Consensus       164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~g  242 (301)
                      .+.+++.+|..+++. ... ...+..++.....  .......++.......+ ..+.+.+. ..+...+......+..+|
T Consensus       272 ~l~~~~~~~~~~~~~-~~~-~~~~~~ig~~l~~--~~~~~~~~~~~~~~~~~~l~~~G~~~-~~p~~~~~al~~~~~~~G  346 (413)
T PRK15403        272 AIVARFVKDPTEPRF-IWR-AVPIQLVGLALLI--VGNLLWPHVWLWSVLGTSLYAFGIGL-IFPTLFRFTLFSNNLPKG  346 (413)
T ss_pred             HHHHHHhccCCchhH-HHH-HHHHHHHHHHHHH--HHHHHccccHHHHHHHHHHHHHHHHH-HhHHHHHHHhccCCCCCc
Confidence            777765543322211 000 0011111111111  11001122221111111 11222221 112222111111223468


Q ss_pred             HHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198          243 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG  281 (301)
Q Consensus       243 ~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~  281 (301)
                      ++.++.+.....+..+++...|++.++ +-...|....+
T Consensus       347 ~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  384 (413)
T PRK15403        347 TVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAV  384 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence            888888998888899999999998887 34555544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.84  E-value=8.3e-19  Score=159.99  Aligned_cols=261  Identities=10%  Similarity=0.092  Sum_probs=162.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |.+.++..++  +|+|+++.+......++|.++|+++++++.+++|||.+|++.++..++. ++.....||+++++   +
T Consensus       113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~---~  186 (382)
T PRK11128        113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTIMPQG---E  186 (382)
T ss_pred             cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCCCCcc---c
Confidence            5556666666  5678888999999999999999999999999999999999866543332 22222233321110   1


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                       ++++       .++  ...++++++|+|++|...+..++.........+++|.|+++ .|+|..+.+.+.....++..+
T Consensus       187 -~~~~-------~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~  255 (382)
T PRK11128        187 -SRQQ-------ESA--GWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVL  255 (382)
T ss_pred             -cccc-------ccc--ccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence             1000       000  12357889999999987776666666666778888999964 799999999988877788888


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~  240 (301)
                      ..++.|++.||+++|+        .+ ....+..++........+++...+. ....+.+.+.+ .+.......+..+++
T Consensus       256 ~~~~~g~l~~r~~~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~  325 (382)
T PRK11128        256 IFAFSNRLFRRWSARD--------LL-LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC-HLAAMRYIAARPGSE  325 (382)
T ss_pred             HHHHHHHHHHHCCHHH--------HH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHhh
Confidence            8899999999987652        11 1122222222222223334433222 22222222221 122222233344555


Q ss_pred             hHHHHHHHhHHH-hhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          241 SGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       241 ~g~a~g~~~~~~-~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      .+...+..+... ..|..++|.+.|.+.|+.|. ..+...+++.++++++.
T Consensus       326 ~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        326 VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            677777766444 34568999999999999765 35555566666554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.83  E-value=1.6e-19  Score=166.73  Aligned_cols=268  Identities=11%  Similarity=0.072  Sum_probs=159.8

Q ss_pred             HhhccC--cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHH
Q 022198            8 LSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK   85 (301)
Q Consensus         8 i~~~~p--~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~   85 (301)
                      +.+|.+  +++||+..|......++|..+++++++.+.+ .+||++|++.+++.++...++....+|+|+++ +.+++++
T Consensus       128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  205 (420)
T PRK09528        128 IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTA-KVANALG  205 (420)
T ss_pred             hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchh-hhccchh
Confidence            344443  3566788899999999999999999998876 59999999877666554334333333322211 1001000


Q ss_pred             HHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHH
Q 022198           86 KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFS  162 (301)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g  162 (301)
                             .++++....+.++++|||.+|...+..++....+.....|.|.|+.+.+   +.+..+.++...+..++..++
T Consensus       206 -------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  278 (420)
T PRK09528        206 -------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALI  278 (420)
T ss_pred             -------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence                   0011101113456889998876555444443444456678888887654   556667788888888888899


Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhc-cCCCc
Q 022198          163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQD-IAPRY  240 (301)
Q Consensus       163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~p~~  240 (301)
                      .+++|+++||+++|+..        . .+.....+........+++...+.+... +.+.... .........+ .+++.
T Consensus       279 ~~~~g~l~dr~g~~~~~--------~-~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~  348 (420)
T PRK09528        279 MFFAPFIINRIGAKNAL--------L-LAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRL  348 (420)
T ss_pred             HHHHHHHHHHhCcchhh--------H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccc
Confidence            99999999999876321        1 1111111111112223344333222111 1111111 1112222233 34566


Q ss_pred             hHHHHHH-HhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhc
Q 022198          241 SGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS  294 (301)
Q Consensus       241 ~g~a~g~-~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~  294 (301)
                      +++..+. .|...++|+.++|.+.|++.|+.||+..|...+++.+++.+......
T Consensus       349 ~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        349 SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            7766554 57778899999999999999998899999988777776655544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=3.6e-18  Score=156.17  Aligned_cols=160  Identities=14%  Similarity=0.133  Sum_probs=119.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      +....++.|++|+|+|+++.+..+....+|..+++.+++.+.+.+|||+.|++.+.+.++..++.....+|++++++   
T Consensus       110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---  186 (392)
T PRK10473        110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARA---  186 (392)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc---
Confidence            34667899999999999999999999999999999999998888999999999877765544333334444332110   


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      +++.          +  ...+.++.+|+|+++...+...+.......+..+.|.++++++|++..+.+.......++..+
T Consensus       187 ~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~  254 (392)
T PRK10473        187 PAAS----------S--KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMT  254 (392)
T ss_pred             CCcc----------c--hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            0000          0  011234578888877655444443344556677889999999999999999888888899999


Q ss_pred             HHHHHHHHHHHHHHc
Q 022198          162 SANLGGWIADTLVSK  176 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r  176 (301)
                      +.++.+++.||+++|
T Consensus       255 ~~~~~~~l~~r~g~~  269 (392)
T PRK10473        255 VSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHHHHHHHhcCHH
Confidence            999999999999876

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=9.4e-19  Score=157.88  Aligned_cols=161  Identities=14%  Similarity=0.096  Sum_probs=119.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--------CchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFYSFGSLGTVWFTVWLSK-AHS   72 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--------WR~~F~~~g~l~~~~~~~~~~~-~~~   72 (301)
                      |+..+++.|++|+|||+++.++...+.++|.++++.+++.+.+.+|        ||.+|++.+++.++. .+.... .+|
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~-~~~~~~~~~e  180 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPG-LLVTLFLAKE  180 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHH-HHHHHHhccC
Confidence            4567889999999999999999999999999999999999998888        999999877655443 222222 333


Q ss_pred             CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChh---HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198           73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG  149 (301)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~  149 (301)
                       |+++++.++++++.           .+.++++++++|.   .+...+..++...+.+...+|+|+|+++ +|++.++.+
T Consensus       181 -~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g  247 (356)
T TIGR00901       181 -PQEDASVPKPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIA  247 (356)
T ss_pred             -CCcccccchhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence             33221111111100           0114566778775   6666666666667788889999999987 899999998


Q ss_pred             hHhhhhH-HHHHHHHHHHHHHHHHHHHc
Q 022198          150 LFCVLPW-LTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       150 ~~~~~~~-i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      .+..... ++..++.+++|+++||+++|
T Consensus       248 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~  275 (356)
T TIGR00901       248 LVAKINGLLGAILGGLIGGIIMQPLNIL  275 (356)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8776554 57789999999999999876

>PRK10133 L-fucose transporter; Provisional

Probab=99.83  E-value=2.4e-18  Score=159.78  Aligned_cols=270  Identities=10%  Similarity=0.107  Sum_probs=164.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------------------h--------cCCchhHHhh
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------------------R--------FGWPSVFYSF   55 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------------------~--------~gWR~~F~~~   55 (301)
                      +++.+++.++.|+++|.+.++..+...++|..+|+.+++.+..                  .        .+||++|+..
T Consensus       136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~  215 (438)
T PRK10133        136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_pred             hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888999999999999999988765440                  0        3677777653


Q ss_pred             hhhHHHHHHHH-hhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHH
Q 022198           56 GSLGTVWFTVW-LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  134 (301)
Q Consensus        56 g~l~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp  134 (301)
                      ..+..+...+. .+..||.|+++    ++++        ++.+ ...++++++|+|.++...+..++...+.++...|+|
T Consensus       216 ~~v~~~~~~~~~~~~~p~~~~~~----~~~~--------~~~~-~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~  282 (438)
T PRK10133        216 VAIVLLVALLIMLTKFPALQSDN----HSDA--------KQGS-FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI  282 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCCCccc----cccc--------cccc-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43332222222 22222211110    0000        0000 011346789999988776666666667777889999


Q ss_pred             HHH-HHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH
Q 022198          135 TYY-NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL  213 (301)
Q Consensus       135 ~~l-~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (301)
                      .|+ ++.+|+|+.++++...+..+++.+|.+++|++.||+++|+.        +.....+....... .....+......
T Consensus       283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--------l~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (438)
T PRK10133        283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--------LAAYALIAMALCLI-SAFAGGHVGLIA  353 (438)
T ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--------HHHHHHHHHHHHHH-HHHcCChHHHHH
Confidence            996 56789999999999999999999999999999999987621        11111111111111 111112211222


Q ss_pred             HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHHHHHh
Q 022198          214 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      +...+++.+ ...+..++...+..|++.+++.++.+. ...++.++|.+.|.+.|+.| .+..|.+...+++.. +.+..
T Consensus       354 ~~l~glg~~-~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~-~~~~~  430 (438)
T PRK10133        354 LTLCSAFMS-IQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI-FIFAR  430 (438)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHH
Confidence            222233322 223445555555566767777777653 55788999999999999866 777877655444443 33344


Q ss_pred             hcCC
Q 022198          293 FSTG  296 (301)
Q Consensus       293 ~~~~  296 (301)
                      ..+|
T Consensus       431 ~~~~  434 (438)
T PRK10133        431 FRSQ  434 (438)
T ss_pred             Hhhc
Confidence            4433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.5e-18  Score=149.92  Aligned_cols=256  Identities=16%  Similarity=0.198  Sum_probs=179.1

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA   83 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~   83 (301)
                      ...+-+.||+ +-+..+|++.+...+|..+++.+...+.++. |||......+.++++.++.|++.. .+++ .+  +. 
T Consensus       121 PslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~-~r~~-~~--~~-  194 (395)
T COG2807         121 PSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA-LREQ-AA--SI-  194 (395)
T ss_pred             hHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc-cccc-cc--cc-
Confidence            3567788876 7899999999999999999999999998887 799999998999888777787642 1110 00  00 


Q ss_pred             HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198           84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA  163 (301)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~  163 (301)
                                 +.+  ..+-++++|+|..|...+...+++..+|....|+|.++.| +|+|..++|.+..+..+...+.+
T Consensus       195 -----------~~~--~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~  260 (395)
T COG2807         195 -----------ATK--LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTA  260 (395)
T ss_pred             -----------ccc--cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHH
Confidence                       000  1122358999999999998889999999999999999985 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCCCch
Q 022198          164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAPRYS  241 (301)
Q Consensus       164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~  241 (301)
                      +..-.+.+|...++       ...........+ ++-..+.....+...+.+  .+.+- +.|.........+...|+..
T Consensus       261 ll~P~la~R~~n~r-------~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~l--lG~G~G~~F~laL~li~~rs~~a~~A  331 (395)
T COG2807         261 LLIPLLARRSKNQR-------PLVVLALLLMLVGLVGLLLAPGQLPILWALL--LGLGQGGAFPLALTLILLRSSDAAIA  331 (395)
T ss_pred             HHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhCccchHHHHHHHHHHhhcCChHHH
Confidence            99999999965442       221111111111 111111122233333222  22221 12332222233344567888


Q ss_pred             HHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198          242 GVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~  289 (301)
                      +.-+|..+.+|++-+++||.+.|++-|. ++|...+...+...++..+.
T Consensus       332 a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         332 AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 88998877665555544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.83  E-value=6.3e-19  Score=181.46  Aligned_cols=269  Identities=12%  Similarity=0.058  Sum_probs=173.4

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      .|+..+++.+++|+++|++++|+.+++.++|.++|+++++++.+.+|||+.|+..++..++. .+...+.++.++.++..
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  204 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAPDL  204 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCC
Confidence            37889999999999999999999999999999999999999999999999995544433332 22223344433221111


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~  160 (301)
                      +.... ...        .....++.+.++|.+|...+..++.....+.+.+|+|.|+++.+|.++.+.+++.....+++.
T Consensus       205 ~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        205 KIDRN-IIR--------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVA  275 (1140)
T ss_pred             eeccc-hHH--------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            10000 000        001135678899999988877776666677788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH---------------HhhccCChHH-HHHHHHHHHhhhhh
Q 022198          161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT---------------QLSHVDSPAM-AVLCMACSQGTDAF  224 (301)
Q Consensus       161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~  224 (301)
                      +|.++.|+++||..+++......    .........+...               .+....+... .+..+..+++.+.+
T Consensus       276 ig~~~~g~l~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  351 (1140)
T PRK06814        276 VGSFLASKLSEGRITLLYVPIGA----LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLY  351 (1140)
T ss_pred             HHHHHHHHHhCCceeeeeehHHH----HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHh
Confidence            99999999998765443221110    0011100000000               0000012211 12222222222222


Q ss_pred             hhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198          225 SQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL  284 (301)
Q Consensus       225 ~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~  284 (301)
                      . ....+..++. +++.+|.+.|+.|...+++..+++.+.|.+.+. .+....+.+.+.+.+
T Consensus       352 ~-~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        352 I-VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANL  412 (1140)
T ss_pred             H-HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            2 2234444444 456899999999999999999999999999864 456665555444333

>TIGR00898 2A0119 cation transport protein

Probab=99.82  E-value=4e-18  Score=160.98  Aligned_cols=279  Identities=14%  Similarity=0.026  Sum_probs=155.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC-C
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-L   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~-~   80 (301)
                      |....++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.+ ...||+|+.... -
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~  274 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQG  274 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCC
Confidence            5677899999999999999999999999999999988776654   9999999887766543333 456787753110 0


Q ss_pred             CHHH-HHHHH---h---------------ccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh
Q 022198           81 RPAE-KKLIV---S---------------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL  141 (301)
Q Consensus        81 ~~~~-~~~~~---~---------------~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~  141 (301)
                      +.+| .+...   +               ++..++..++.++++++|+|.++...+....... ...+..+...+..+..
T Consensus       275 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  353 (505)
T TIGR00898       275 RIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-TTAFSYYGLVLDLGNL  353 (505)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH-HHHHHHHHHhcccccc
Confidence            1111 11000   0               0000001112467889999988765443322211 1122222222222334


Q ss_pred             CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHHHHHH-H
Q 022198          142 HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVLCMAC-S  218 (301)
Q Consensus       142 g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~  218 (301)
                      +.+..   ....+..+...++.++.++++||+|||..        + ....+..++.  ...+.........+..... .
T Consensus       354 ~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  421 (505)
T TIGR00898       354 GGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT--------M-AASLLLAGVALLLLLFVPVDLYFLRTALAVLGK  421 (505)
T ss_pred             CCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------H-HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            55432   22334456778899999999999986521        1 1111111111  1111121211222221111 1


Q ss_pred             HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH-HHHhhcCC
Q 022198          219 QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA-VWNLFSTG  296 (301)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~-~~~~~~~~  296 (301)
                      ++.. ......+....|..| +.|+++.|+.+..+++|+.++|.+.+ + +..+....+.+.++..+++.+ .+.+-+|+
T Consensus       422 ~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       422 FGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            1111 111223444556666 57999999999999999999999998 4 333455555555555555433 33334666


Q ss_pred             cccc
Q 022198          297 EKVV  300 (301)
Q Consensus       297 ~~~~  300 (301)
                      ++.+
T Consensus       499 ~~~l  502 (505)
T TIGR00898       499 GVPL  502 (505)
T ss_pred             CCCC
Confidence            6554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.82  E-value=8.6e-18  Score=153.20  Aligned_cols=257  Identities=12%  Similarity=0.004  Sum_probs=156.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+.+.++.|+++|+++++.++.+.++|..+|+.+++.+.+...|+..+.. +.+......+...  +.+|+++    
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~----  185 (381)
T PRK03633        113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILPLLFT--RILNQQA----  185 (381)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHHh--cccCCCC----
Confidence            33456677889999999999999999999999999999998876544444332 3222111112111  1111110    


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      +            +++  +.++++.+|+|..+......+..........+|+|.|+++ .|.|..+++.+.....++..+
T Consensus       186 ~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~  250 (381)
T PRK03633        186 E------------NHD--STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGIL  250 (381)
T ss_pred             C------------CCC--CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence            0            000  1234567888887765443333333455567899999976 599999999988888899999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccC-CCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~  240 (301)
                      +.+..|++.||+++|+.        +. .......+.......  ...........+.+.. ...+...+...+.. ++.
T Consensus       251 ~~~~~g~l~dr~~~~~~--------l~-~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~  318 (381)
T PRK03633        251 GQWPIGRLADRFGRLLV--------LR-VQVFVVILGSIAMLS--QAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHE  318 (381)
T ss_pred             HHhhhHHHHHHcCcHHH--------HH-HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHH
Confidence            99999999999986521        11 111111111111111  1111111111111111 11122223233433 445


Q ss_pred             hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      ++...+..+...++|+.++|.+.|++.|+.++...|.+.+.+.+++.+.+.+
T Consensus       319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            6666777778888999999999999999988999998887777766555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.81  E-value=1e-17  Score=149.46  Aligned_cols=241  Identities=29%  Similarity=0.475  Sum_probs=174.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|||+++.++.+...++|..+++.+++.+.+..+||+.|++.+.+.++..+.... .+          
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------  174 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL----------  174 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH----------
Confidence            5667899999999999999999999999999999999999999999999999877665543222211 10          


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                                                  |.++...+..++..........+.|.++++.+|.+..+.+.......++..+
T Consensus       175 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (352)
T cd06174         175 ----------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL  226 (352)
T ss_pred             ----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                                        4555666666666777888899999999988899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-C
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-R  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~  239 (301)
                      +.++.++++||+++|+.       .+ ........+........++....... ...+.+.+. ..+.......+..| +
T Consensus       227 ~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  297 (352)
T cd06174         227 GALLGGLLSDRLGRRRL-------LL-LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF-AFPALLTLASELAPPE  297 (352)
T ss_pred             HHHHHHHHHHHHHhhhH-------HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHH
Confidence            99999999999987620       11 11121111111112222233222221 112222221 12223334445555 7


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +++...++.+...++++.++|.+.|.+.|+.++...+.+.+++.+++.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         298 ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999998889999988888877776554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=99.81  E-value=3.3e-18  Score=156.80  Aligned_cols=268  Identities=12%  Similarity=0.076  Sum_probs=159.9

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+..+|.+|+|+|+++.|+.+...++|..+|+++++.+.+ +|||.+|++.+++.++..+......+|+++++   +
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~  190 (395)
T PRK10054        115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI---A  190 (395)
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccc---c
Confidence            4456777899999999999999999999999999999998875 79999999877665543222222233322111   0


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh--CCCcchhhhHhhhhHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL--HFNLTESGLFCVLPWLTM  159 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~--g~s~~~~~~~~~~~~i~~  159 (301)
                      ++++         +    ..+.++++|||+++...+..++.......+..|.+.|+.+..  +.+....+.+.....+..
T Consensus       191 ~~~~---------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  257 (395)
T PRK10054        191 TETG---------S----VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMV  257 (395)
T ss_pred             cchh---------h----hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhhe
Confidence            0000         0    011256889999888777777666666667778888886543  444445565555555555


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHHHHhhhhh-hhcchhhhhhccC
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAF-SQSGLYSNHQDIA  237 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  237 (301)
                      .......|++.||.++|..        + ..++...++....... .++....... ...++.+.. ..+.......+..
T Consensus       258 ~~~~~~~g~~~~~~~~~~~--------l-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~p~~~~~~~~~~  327 (395)
T PRK10054        258 VSLQYSVGRRLNAANIRPL--------M-TAGTLCFVIGLVGFIFSGNSLLLWGMS-AAVFTVGEIIYAPGEYMLIDHIA  327 (395)
T ss_pred             eeehhHHHHHHccCCchhH--------H-HHHHHHHHHHHHHHHHcchHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhC
Confidence            5666777888888765421        1 1111111111111111 1222212111 112222211 1122233333443


Q ss_pred             C-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198          238 P-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK  298 (301)
Q Consensus       238 p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~  298 (301)
                      | +.++...+..+ .+.+|..+||.+.|++.|+.|....|.+.+....++.++ +.-+.+||
T Consensus       328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~  387 (395)
T PRK10054        328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL-MLKGMRAR  387 (395)
T ss_pred             CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH-HHhccccC
Confidence            4 56777777644 667899999999999999988888887765555554443 33455554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.80  E-value=3.3e-18  Score=156.71  Aligned_cols=256  Identities=11%  Similarity=0.048  Sum_probs=155.5

Q ss_pred             chhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCC
Q 022198           15 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCAS   94 (301)
Q Consensus        15 ~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   94 (301)
                      +++++..|......++|..+|+++++.+.+ +|||.+|++.+.++++..++.+...+|+|+++ +    +++ . .+ .+
T Consensus       129 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~-~~-~~  199 (396)
T TIGR00882       129 RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSA-T----VAN-A-LG-AN  199 (396)
T ss_pred             hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhh-h----hhc-c-cc-cc
Confidence            344556777888889999999999887755 69999999987777665433333223322110 0    000 0 00 00


Q ss_pred             CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHHHHHHHHHHH
Q 022198           95 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIAD  171 (301)
Q Consensus        95 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D  171 (301)
                      +++.+..+.++++|||++|...+..++....+.....|.|.|+++.+   +.+..+.+....+..+...++.+..|++.|
T Consensus       200 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~  279 (396)
T TIGR00882       200 ASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN  279 (396)
T ss_pred             cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111225678999999887666555544455556678999998765   455566787777777888889999999999


Q ss_pred             HHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhh-hhhcchhhhhhc-cCCCchHHHHHH-H
Q 022198          172 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA-FSQSGLYSNHQD-IAPRYSGVLLGL-S  248 (301)
Q Consensus       172 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~p~~~g~a~g~-~  248 (301)
                      |+++|+..         .++....++........+++....... ...+... ..........++ .+++.++++.+. .
T Consensus       280 r~g~~~~l---------~~~~~l~~l~~~~~~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~  349 (396)
T TIGR00882       280 RIGAKNAL---------LIAGTIMSVRIIGSSFATTALEVVILK-MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGF  349 (396)
T ss_pred             HhccchhH---------HHHHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHH
Confidence            99876321         111111111111122233443332221 1122111 111111122222 334556665544 5


Q ss_pred             hHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          249 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       249 ~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      +....+|+.++|.+.|++.|..|+...|.+.+++.++..++
T Consensus       350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999988999999988887776554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.79  E-value=8.8e-18  Score=155.55  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=149.1

Q ss_pred             hhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-------hhcCCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198            5 NNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLI-------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE   76 (301)
Q Consensus         5 ~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~   76 (301)
                      .++..|.. +++||++..++-+.+.++|..++..+.+.+.       +..|||++|.+.++++++.........+|++++
T Consensus       121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~  200 (437)
T TIGR00792       121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE  200 (437)
T ss_pred             hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC
Confidence            45667776 6799999999999988888877766655444       256899999998888766544433444544321


Q ss_pred             CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198           77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW  156 (301)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~  156 (301)
                      .++   +++        ++.+ .+..++++++||+++...+..++...+.+....+.+.|.+..+| +..+.+.+.....
T Consensus       201 ~~~---~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  267 (437)
T TIGR00792       201 IPK---NIE--------KKLS-LKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAI  267 (437)
T ss_pred             CCc---ccc--------cCCC-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHH
Confidence            110   000        0000 01235678899999887777776666666666666666665555 4556666667778


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH--HHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhh
Q 022198          157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF--FLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNH  233 (301)
Q Consensus       157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  233 (301)
                      ++..++.++.++++||+++|+.        .. .+....++  ....+.. ++....+.+ ...+.+.+.. .+..++..
T Consensus       268 i~~ii~~~~~~~l~~r~g~~~~--------~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~  336 (437)
T TIGR00792       268 VAGLIGVLLFPRLVKKFGRKIL--------FA-GGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFV-TGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            8999999999999999986521        11 11111111  1111111 222222221 2222222211 11122222


Q ss_pred             hcc--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          234 QDI--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       234 ~~~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      .|.        .++.+|...|+.+...++++++++.+.|++.|..|+
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            221        235679999999999999999999999999987555

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.78  E-value=2.4e-17  Score=169.80  Aligned_cols=266  Identities=19%  Similarity=0.136  Sum_probs=162.7

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh--------c-CCchhHHhhhhhHHHHHHHHhhhccC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------F-GWPSVFYSFGSLGTVWFTVWLSKAHS   72 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~--------~-gWR~~F~~~g~l~~~~~~~~~~~~~~   72 (301)
                      |+..++++|++|+++|++++|+.+++.++|.++|+.+++++.+.        + +|++.+.+..+...+..++.....++
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK  201 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence            66788999999999999999999999999999999999999876        3 45555554333332222222233455


Q ss_pred             CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc-hhhhH
Q 022198           73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT-ESGLF  151 (301)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~-~~~~~  151 (301)
                      .|+..+..++.+..       .........++.++++|.++...+..++.....+...+|+|.|+++.+|++.. +.+++
T Consensus       202 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~  274 (1146)
T PRK08633        202 VPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYL  274 (1146)
T ss_pred             CCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHH
Confidence            44322111000000       00000012356788899888776666655556677889999999999999999 99999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchh
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLY  230 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  230 (301)
                      .....++..++.++.|+++||+++++...         ++.++.++....+....+....+ .+...+++.+.. .....
T Consensus       275 ~~~~~ig~~~g~~~~g~l~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~  344 (1146)
T PRK08633        275 LAASAIGIGIGSLLAGRLSGRHIELGLVP---------LGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLF-IVPLN  344 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceEccchh---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            88888999999999999999987653211         11111111111111122222222 222222222211 12223


Q ss_pred             hhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198          231 SNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL  284 (301)
Q Consensus       231 ~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~  284 (301)
                      +..++. +++.+|.+.++.+...++++.+++.+.+.+... .++...|.+.+.+.+
T Consensus       345 ~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        345 ALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            334444 456899999999999999888887776655443 244445554444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.77  E-value=1.5e-16  Score=146.51  Aligned_cols=257  Identities=13%  Similarity=0.116  Sum_probs=153.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------------------------hcCCchhHHhh
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------------------------RFGWPSVFYSF   55 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------------------------~~gWR~~F~~~   55 (301)
                      +++..++.+..|+|+|++.+++.+...++|..+|+.+++.+..                          ..+||++|++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~  192 (410)
T TIGR00885       113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII  192 (410)
T ss_pred             hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999998887742                          24799999988


Q ss_pred             hhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHH
Q 022198           56 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  135 (301)
Q Consensus        56 g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~  135 (301)
                      +.+.++..+.+.. . +.|+.++  +++++         ++  .+.+.++++|+|+++...+..++......+..+|++.
T Consensus       193 a~~~~~~~~~~~~-~-~~p~~~~--~~~~~---------~~--~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~  257 (410)
T TIGR00885       193 GAVVLAVALLIML-T-KMPALNH--SDAKQ---------IS--FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQ  257 (410)
T ss_pred             HHHHHHHHHHHHH-h-cCCCCCc--ccccc---------cc--chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877654333322 2 1232110  00000         00  0113456889999888777767665556677899999


Q ss_pred             HHHHHh-CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH
Q 022198          136 YYNQVL-HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC  214 (301)
Q Consensus       136 ~l~~~~-g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (301)
                      |+++.. +.+...++.+......+..+|.++++++.||+++|+        .+... ....++........++......+
T Consensus       258 y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--------~l~i~-~~~~~~~~ll~~~~~~~~~~~~l  328 (410)
T TIGR00885       258 YAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--------VLMAY-AIIGMALCLGSIFAGGHVGLYCL  328 (410)
T ss_pred             HHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------HHHHH-HHHHHHHHHHHHHcCChHHHHHH
Confidence            997532 344444455555566788899999999999997652        21111 11111111111122222222222


Q ss_pred             HHHHHhhhhhhhcchhhhhhccCCCchHH-HHHHHhHHHhhHHhHHHhHhhhhcccC------cchHHHHHHHHHHHH
Q 022198          215 MACSQGTDAFSQSGLYSNHQDIAPRYSGV-LLGLSNTAGVLAGVFGTAATGYILQHG------SWDDVFKVSVGLYLV  285 (301)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-a~g~~~~~~~lgg~~~~~l~g~l~~~~------~~~~~f~~~~~~~~v  285 (301)
                      ...+..... ..+..++...+..+++... +.++..+  -+||++.|.+.|++.|+.      +.+..|.+...+++.
T Consensus       329 ~~~glf~s~-~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       329 TLCSAFMSL-MFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            222222211 1134455444444444333 3333332  389999999999999953      577777765555554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.70  E-value=4.4e-15  Score=139.89  Aligned_cols=270  Identities=18%  Similarity=0.164  Sum_probs=173.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |+-.+++.|..|+++..++.++.+...+++-.+||.++|.+...+|=.++|.+.++.-++ .+..+...+++++++ +.+
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~-~i~~l~~~~~~~~~~-~~~  199 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI-SILALLRWKPPPPPS-SLP  199 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcccccccc-ccc
Confidence            777899999999999999999999999999999999999999999988999986553332 222222222211111 111


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      + |+ . .+     .  -+.-++-+.++|.+.......++.+.....+..-+|.+.++.+|.++...|++....++|+.+
T Consensus       200 ~-e~-~-~~-----~--l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~  269 (524)
T PF05977_consen  200 R-ER-F-FS-----A--LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAIL  269 (524)
T ss_pred             h-hh-h-hh-----h--HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            1 11 0 00     0  011234456677776655444444444444556689999999999999999999988899998


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCC-C
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAP-R  239 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p-~  239 (301)
                      |+++.+++.+|+.+++        .+ ....+..++....+....+....+..+ ..+.+..... .......|...| +
T Consensus       270 Gal~~~~l~~~~~~~~--------lv-~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~  339 (524)
T PF05977_consen  270 GALLLPRLRRRLSSRR--------LV-LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN-SSLNTLVQLSVPDW  339 (524)
T ss_pred             HHHHHHHhhcccCcch--------hh-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHH
Confidence            8888888877764331        11 111222222222233333333322222 2222222221 222333444545 6


Q ss_pred             chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+|.+.++.++..+.+..+|..+.|.+.|+.|....+.+.++..+++.++....
T Consensus       340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999888888887777666666555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.70  E-value=2.3e-16  Score=152.30  Aligned_cols=175  Identities=14%  Similarity=0.212  Sum_probs=126.6

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc----------------------CCchhHHhhhhhH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLG   59 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~----------------------gWR~~F~~~g~l~   59 (301)
                      |...+++.|++|+++|++++|+++++..+|.++|+++++.+.+.+                      +||..|++.++++
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~  270 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA  270 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            567799999999999999999999999999999999999988643                      2778899888887


Q ss_pred             HHHHHHHhhhccCCCCCCCCC--CHHHHHHHHh-ccCC-CC---CCC--CCChHHhhcChhHHHHHHHHHhhHHHHHHHH
Q 022198           60 TVWFTVWLSKAHSSPAEDPQL--RPAEKKLIVS-SCAS-KE---PVK--TIPWGLILSKPPVWALIVSHFCHNWGTFILL  130 (301)
Q Consensus        60 ~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~-~~---~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  130 (301)
                      ++..+.++...++.|++.++.  ++++++...+ +... .+   ..+  ...+++++|||.++...+..++.....+++.
T Consensus       271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~  350 (633)
T TIGR00805       271 LLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI  350 (633)
T ss_pred             HHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            665443333222333221111  1111100000 0000 00   000  0135679999999998888888888899999


Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHHHc
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~~r  176 (301)
                      +|+|.|+++++|+++.+++++..+..+ ++.+|.+++|+++||++.+
T Consensus       351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            999999999999999999999877665 6789999999999998744

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.6e-16  Score=142.54  Aligned_cols=265  Identities=14%  Similarity=0.154  Sum_probs=156.1

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC-CchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g-WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |.+.++++|.||.++|+++.++++.+.++|..+|.+.+..+..+-+ |||.|...++++++..++.....+| |++. ..
T Consensus       140 ~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e-P~rg-a~  217 (493)
T KOG1330|consen  140 PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE-PERG-AR  217 (493)
T ss_pred             ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC-cccc-cc
Confidence            7889999999999999999999999999999999999999988766 9999999999998876555544444 4321 00


Q ss_pred             CHHHHHHHHhccCCCCCC--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhh
Q 022198           81 RPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLP  155 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~  155 (301)
                      ++.+     .+.+...+.  .-.|.+.+.|+|.+-...+.+....+..-++.-|.|.+++..+   |.+..+...+..+.
T Consensus       218 ~~~~-----~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt  292 (493)
T KOG1330|consen  218 DEVD-----GENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVT  292 (493)
T ss_pred             cccc-----cCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHH
Confidence            0000     000000110  0113444566666555444444444445556678888766443   55555555666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHhhHHHHHHHHHhhccCChHH--HHHHHHHHHhhhhhhhcchh-
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRK--IMQSIGFLGPAFFLTQLSHVDSPAM--AVLCMACSQGTDAFSQSGLY-  230 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  230 (301)
                      ..++.+|.++||.++||+.++.......+.  .....+....+.++...........  .+.+...+.....++..... 
T Consensus       293 ~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~  372 (493)
T KOG1330|consen  293 CAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNP  372 (493)
T ss_pred             HhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            889999999999999998653222111111  1111222223333322222222221  11222111111111111111 


Q ss_pred             hhhhccCCCchHHHHHHHhHHHhhHHhHH-HhHhhhhccc-Ccch
Q 022198          231 SNHQDIAPRYSGVLLGLSNTAGVLAGVFG-TAATGYILQH-GSWD  273 (301)
Q Consensus       231 ~~~~~~~p~~~g~a~g~~~~~~~lgg~~~-~~l~g~l~~~-~~~~  273 (301)
                      ...+-++|+.|.++.++-...-.+.|-.+ |.++|.+.|+ .|+.
T Consensus       373 i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  373 IFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             eeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            11222467889998888777777655555 5599999998 4444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=1.1e-14  Score=134.48  Aligned_cols=248  Identities=10%  Similarity=0.091  Sum_probs=141.6

Q ss_pred             hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCC
Q 022198           16 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK   95 (301)
Q Consensus        16 ~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   95 (301)
                      .|.|..|      ++|.++|+.+++.+.....|+. |++.+++.++..+ .....||+|+.+++.++..+         +
T Consensus       133 ~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~---------~  195 (418)
T TIGR00889       133 PPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGV-FALTLPDIPVAKSTAKMSIK---------V  195 (418)
T ss_pred             CCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHH-HHhcCCCCCCCccccccCHH---------H
Confidence            4455555      3677778888877744445664 5555555544332 23345665432111000000         0


Q ss_pred             CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCc--------chhhhHhhhhHHHHHHHHHHHH
Q 022198           96 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNL--------TESGLFCVLPWLTMAFSANLGG  167 (301)
Q Consensus        96 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~--------~~~~~~~~~~~i~~~~g~~~~G  167 (301)
                      +  .+.+.++++|+|+++...+..++..........+.|.|+++ .|.++        ++.+....+..+...++.+..|
T Consensus       196 ~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g  272 (418)
T TIGR00889       196 M--LGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIP  272 (418)
T ss_pred             H--hhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            0  01134568899988877666666555555566888899875 46554        5668888888888889999999


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCCh---HHHHH-HHHHHHhhhhhhhcchhhhhhccCC-Cch
Q 022198          168 WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSP---AMAVL-CMACSQGTDAFSQSGLYSNHQDIAP-RYS  241 (301)
Q Consensus       168 ~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p-~~~  241 (301)
                      +++||+++|+        .+ ..+.+...+....... ..+.   ...+. ....+.+.+.. .+.......+..| +.+
T Consensus       273 ~l~dr~g~r~--------~l-~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~  342 (418)
T TIGR00889       273 FFLKRFGIKK--------VM-LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIR  342 (418)
T ss_pred             HHHHHhCcHH--------HH-HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHH
Confidence            9999998652        11 1222222221111111 1111   11111 11112222211 1222223344444 689


Q ss_pred             HHHHHHHh-HHHhhHHhHHHhHhhhhccc------CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          242 GVLLGLSN-TAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       242 g~a~g~~~-~~~~lgg~~~~~l~g~l~~~------~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.+.|+.+ ....+|+.++|.+.|++.|+      .||+..|.+.+++.+++++.+..+
T Consensus       343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF  401 (418)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987 56778999999999999997      358889988777766665554444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=4.4e-15  Score=139.31  Aligned_cols=281  Identities=15%  Similarity=0.222  Sum_probs=183.1

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC---
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ---   79 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~---   79 (301)
                      ++..++.+||+ |+|++|.|+..+|..+|..+=+++...+.+.+|||..+++.+.+.+-.........|..|+..+.   
T Consensus       155 paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~  233 (509)
T KOG2504|consen  155 PAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK  233 (509)
T ss_pred             chhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence            34556676665 59999999999999999999999999999999999999998777654333333333322221111   


Q ss_pred             --------------------------CCH----HHHHHHHhccCCC-CCCCCCCh---HHhhcChhHHHHHHHHHhhHHH
Q 022198           80 --------------------------LRP----AEKKLIVSSCASK-EPVKTIPW---GLILSKPPVWALIVSHFCHNWG  125 (301)
Q Consensus        80 --------------------------~~~----~~~~~~~~~~~~~-~~~~~~~~---~~ll~~~~~~~~~~~~~~~~~~  125 (301)
                                                ..+    ++....+.+++.. .+.++...   .++|++|.++...+...+...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g  313 (509)
T KOG2504|consen  234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG  313 (509)
T ss_pred             hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence                                      000    0000000000000 01111111   4689999999888888888888


Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      ++....++|.|.+ .+|++..++.+...+.++...++.++.|+++||...+       ++.+..+.++...+........
T Consensus       314 ~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  314 FNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998 6799999999999999999999999999999987532       1222222222222222222222


Q ss_pred             CCh-HHHHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHH
Q 022198          206 DSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGL  282 (301)
Q Consensus       206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~  282 (301)
                      .+. .+...++..++..+.+.... .....+.. .+.-..+.|+...+..++..++|.+.|++.|. +.|...|.+.+..
T Consensus       386 ~~~~~l~~~~~~fG~~~g~~~~l~-~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~  464 (509)
T KOG2504|consen  386 TTYVGLIVFSILFGFCVGSFSSLT-PVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC  464 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence            222 23333444444433332111 11223343 45567788999999999999999999999998 5599999998888


Q ss_pred             HHHHHHHHHhh
Q 022198          283 YLVGTAVWNLF  293 (301)
Q Consensus       283 ~~v~~~~~~~~  293 (301)
                      .+++...+...
T Consensus       465 ~~~s~~~~~~~  475 (509)
T KOG2504|consen  465 FLLSAVLLLIL  475 (509)
T ss_pred             HHHHHHHHHHh
Confidence            88877665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.66  E-value=1.2e-13  Score=128.83  Aligned_cols=285  Identities=19%  Similarity=0.200  Sum_probs=181.3

Q ss_pred             hhhHhhccCcchh--------------------------HHHHHHHHhhhhhhHHHHhhhHHHHhhh--------cCCch
Q 022198            5 NNILSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPS   50 (301)
Q Consensus         5 ~~~i~~~~p~~~r--------------------------g~a~~~~~~g~~lG~~~g~~l~~~l~~~--------~gWR~   50 (301)
                      ++++.+..+++++                          ++..+.=..-+++|.++...+.-.+...        +.=|.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            4667778877777                          8999988888888888877766555332        22367


Q ss_pred             hHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHH
Q 022198           51 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  130 (301)
Q Consensus        51 ~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  130 (301)
                      .+.+.++--++..+.++...||.|+.++ .++.+.. ....-  ++.  ...++++.|+|.+....+..++.+-+..++.
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~-~~~~~~~-~~~g~--~~l--~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~  301 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPGPRP-LPSGSSY-LRFGF--KRL--WRTFKEIRKLRQLFLFLIAYFLYSDGVNTII  301 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCcchhH-HHHHH--HHH--HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            7776555444444444555566554111 1111100 00000  000  1134566677888887888887777889999


Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh------c
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------H  204 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  204 (301)
                      .....|.++++|+|..+...+.....+.+++|.++.|++.||+|.|..     +..+..+...........++      .
T Consensus       302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-----~~l~~~l~~~~~i~~~g~~G~~~~~~g  376 (477)
T PF11700_consen  302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-----RTLLISLILWIIIPLYGLFGFWPSFFG  376 (477)
T ss_pred             HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            999999999999999999999999999999999999999999986621     11111111111111111110      1


Q ss_pred             cCChHH-HHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHH
Q 022198          205 VDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVG  281 (301)
Q Consensus       205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~  281 (301)
                      ..++.. .+.-...+...+.. ++.-=+...+.- |++.+...|+.+..++..+.+||.+.|.+.|. ++.+.++....+
T Consensus       377 ~~~~~~f~~~a~~~G~~~G~~-qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~  455 (477)
T PF11700_consen  377 LKSPWEFWVLAVLIGLFMGGI-QSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV  455 (477)
T ss_pred             cccHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            122221 12112222222221 111112233444 45779999999999999999999999999998 558889999999


Q ss_pred             HHHHHHHHHHhhcCCccccC
Q 022198          282 LYLVGTAVWNLFSTGEKVVD  301 (301)
Q Consensus       282 ~~~v~~~~~~~~~~~~~~~~  301 (301)
                      +.+++++++..++.+++..|
T Consensus       456 lf~~gl~ll~~v~~~~g~~~  475 (477)
T PF11700_consen  456 LFLIGLILLFFVDVEKGRED  475 (477)
T ss_pred             HHHHHHHHHhhccchhhhhc
Confidence            99999988888877776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.63  E-value=9.3e-14  Score=128.19  Aligned_cols=290  Identities=14%  Similarity=0.080  Sum_probs=163.9

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH--HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC--CC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP--QL   80 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~--~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~--~~   80 (301)
                      .-++.|..|++.||....+...+..+|.+++..++  ..+.+.-.|++.+....++.++. .+.+++.||+||..-  +-
T Consensus       138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKG  216 (485)
T ss_pred             HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcC
Confidence            45789999999999999999999999999997665  33445667999999877666554 455667899997321  11


Q ss_pred             CHHHHHH-H---H-------------hc--cCCCCCCCCCChHHhhcChhHHHHHH----HHHhh-HHHHHHHHHhHHHH
Q 022198           81 RPAEKKL-I---V-------------SS--CASKEPVKTIPWGLILSKPPVWALIV----SHFCH-NWGTFILLTWMPTY  136 (301)
Q Consensus        81 ~~~~~~~-~---~-------------~~--~~~~~~~~~~~~~~ll~~~~~~~~~~----~~~~~-~~~~~~~~~wlp~~  136 (301)
                      +++|.++ .   +             ++  ..+.++.++.++++++++|.++.-..    ..+++ .-+.+....|.-.+
T Consensus       217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i  296 (485)
T KOG0569|consen  217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI  296 (485)
T ss_pred             CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence            1111110 0   0             00  01111124557889999987665322    22222 22445555666555


Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA  216 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (301)
                      ++ +-|++..++.+.....++...+.++++.++.||.|||.+.....  ....+..+...+......... +.....++.
T Consensus       297 ~~-~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~--~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~  372 (485)
T KOG0569|consen  297 FK-TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL--SLMAVALLLMSIALFLSNSFG-SWLSYLCIA  372 (485)
T ss_pred             HH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence            54 56999999999999999999999999999999999875433221  111111111111111111111 111111111


Q ss_pred             HHHhh-hhhh---hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198          217 CSQGT-DAFS---QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       217 ~~~~~-~~~~---~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      +.+.. ..++   .+.-+-...|..| +.|..+..+......+...+-....-.+.+..|- ..|...++...++.+...
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~  451 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY  451 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence            11111 1111   1112233456655 5788888877777666555555555555555222 444444444444433322


Q ss_pred             hh--cCCcccc
Q 022198          292 LF--STGEKVV  300 (301)
Q Consensus       292 ~~--~~~~~~~  300 (301)
                      +.  +|++|..
T Consensus       452 ~~lPETkgr~~  462 (485)
T KOG0569|consen  452 RYLPETKGRTP  462 (485)
T ss_pred             HhCcccCCCCH
Confidence            22  7777753

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.2e-13  Score=119.80  Aligned_cols=248  Identities=13%  Similarity=0.128  Sum_probs=158.7

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------------------cCCchhHHhhhhhHHHHH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------------------FGWPSVFYSFGSLGTVWF   63 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------------------~gWR~~F~~~g~l~~~~~   63 (301)
                      +++.+++...|+++-.+.+.+.+.-.++|..+||++++.++.+                   -.||++|.+.+...++..
T Consensus       124 aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~  203 (422)
T COG0738         124 AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLA  203 (422)
T ss_pred             ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999888762                   259999988666654433


Q ss_pred             HH-HhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC
Q 022198           64 TV-WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH  142 (301)
Q Consensus        64 ~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g  142 (301)
                      +. .+.+.||.++++++               +...++...++++|+|.++...+..|+.-..--...+|+++|+.|..|
T Consensus       204 v~~~~~k~p~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g  268 (422)
T COG0738         204 VLILLSKLPDLQVAAPS---------------LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLG  268 (422)
T ss_pred             HHHHhccCCcCCccccc---------------ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence            22 22222222211110               000011135679999999998888888766667788999999998889


Q ss_pred             CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhh
Q 022198          143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGT  221 (301)
Q Consensus       143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  221 (301)
                      .+..++..+.+....+..+|.+++-++-.|+...        |.+.....+...++. .....++. +.+... .++...
T Consensus       269 ~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~Laf~a~~~ill~~-~~~l~~g~-v~~~~l~~ig~F~  338 (422)
T COG0738         269 LNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KYLAFYALIAILLLL-AVALIGGV-VALYALFLIGLFN  338 (422)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHHHHHHHHHHHHHH-HHHHhcCh-HHHHHHHHHHHHh
Confidence            9999999999999999999999998888887532        222211111111111 11122222 222222 222222


Q ss_pred             hhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198          222 DAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK  277 (301)
Q Consensus       222 ~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~  277 (301)
                       ....+..++...+.-|++...+.++ -..+-.||++-|.+.|++.|+.|....+.
T Consensus       339 -simfPTIfslal~~l~~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         339 -SIMFPTIFSLALKNLGEHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             -HHHHHHHHHHHHhccCcccccccee-eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence             1222334444333334444433343 34456789999999999999976665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.59  E-value=6.2e-13  Score=124.79  Aligned_cols=289  Identities=15%  Similarity=0.076  Sum_probs=151.4

Q ss_pred             CchhhhHhhccCcch---hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHh--hh-ccCCCC
Q 022198            2 PAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL--SK-AHSSPA   75 (301)
Q Consensus         2 p~~~~~i~~~~p~~~---rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~--~~-~~~~p~   75 (301)
                      |+..+++++++|+++   |+++.++.+.+.++|..+|+++++++.+.+|||+.|.+.++..++..+.+.  ++ .+|.|+
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS  200 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence            667789999998865   889999999999999999999999999999999999986643222211211  11 122332


Q ss_pred             CCCCCCHHHHHHHHh-------------c--cCCCC----------------------CCCCCChHHhhcChhHHHHHHH
Q 022198           76 EDPQLRPAEKKLIVS-------------S--CASKE----------------------PVKTIPWGLILSKPPVWALIVS  118 (301)
Q Consensus        76 ~~~~~~~~~~~~~~~-------------~--~~~~~----------------------~~~~~~~~~ll~~~~~~~~~~~  118 (301)
                      ++++.++++++....             .  ...+.                      .++..+..+-.|...+...++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~  280 (475)
T TIGR00924       201 VPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLE  280 (475)
T ss_pred             CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHH
Confidence            221122221110000             0  00000                      0000001111111122222222


Q ss_pred             HHhhHHHHHHHHHhHHHHHHHHhCCCcch----hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          119 HFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~----~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+....+....+-+|.|.++..+.+...    .+++..+..+.-.+..++-.++-.|..||+.......|.  .++++.
T Consensus       281 ~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l  358 (475)
T TIGR00924       281 AVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF--TLGMLF  358 (475)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH--HHHHHH
Confidence            22222233334555677776655554333    566777677776666666555555665542111111111  122222


Q ss_pred             HHHH--HHHh----hc---cCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh
Q 022198          195 PAFF--LTQL----SH---VDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       195 ~~~~--~~~~----~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                      .++.  ...+    ..   ..+..+.+.... .+.+-. +..+...+...+..| +.||...|+......+|..+++.+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~  437 (475)
T TIGR00924       359 CGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA  437 (475)
T ss_pred             HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111  1111    01   123333332222 222221 222333444445544 6899999999988888888988888


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ....+..++...|...+...+++.+++.+.
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       438 TFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            877777778888877766666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.59  E-value=2e-13  Score=119.44  Aligned_cols=284  Identities=15%  Similarity=0.144  Sum_probs=161.6

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |-..++-.|.-|..+|+.-+-.. .-+.+|.+....+.-..++.+||||..+..+.+. ..+..+.+..+|+||.+-.-.
T Consensus       184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~~~~G  261 (528)
T KOG0253|consen  184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL-MFAARFLVWVYESPRFYLAKG  261 (528)
T ss_pred             cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH-HHHHHHHhhcccCcchhhhcC
Confidence            33445566777898998877666 8889999999999999999999999998877443 334455556789997431111


Q ss_pred             HHHHH-----HHHh-----------------ccCCCC-----------CCCCCChHHhhcCh---hHHHHHHHHHhhHHH
Q 022198           82 PAEKK-----LIVS-----------------SCASKE-----------PVKTIPWGLILSKP---PVWALIVSHFCHNWG  125 (301)
Q Consensus        82 ~~~~~-----~~~~-----------------~~~~~~-----------~~~~~~~~~ll~~~---~~~~~~~~~~~~~~~  125 (301)
                      ++++.     ++.+                 ++++++           +......++++..+   +...++...|.+.+.
T Consensus       262 ~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs  341 (528)
T KOG0253|consen  262 DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS  341 (528)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH
Confidence            11110     0000                 000000           00112344455432   333445556666677


Q ss_pred             HHHHHHhH-----------------HHHHHHHhCCCcc-hhhhH-hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q 022198          126 TFILLTWM-----------------PTYYNQVLHFNLT-ESGLF-CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI  186 (301)
Q Consensus       126 ~~~~~~wl-----------------p~~l~~~~g~s~~-~~~~~-~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~  186 (301)
                      +|+.....                 |++++-...-... +..+. ..+..+.-..|.++.+++.||+|||+        .
T Consensus       342 yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk--------T  413 (528)
T KOG0253|consen  342 YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK--------T  413 (528)
T ss_pred             HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh--------H
Confidence            77765444                 3333321111222 22333 34445778899999999999999763        1


Q ss_pred             HHHHhhHHHHHHHH--HhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHh
Q 022198          187 MQSIGFLGPAFFLT--QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       187 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                      + +..++..+++..  ......+....+.+.+-.+.-+.|  ...|.+.+|++|. .|+++.|.....+++||++.|.+.
T Consensus       414 M-al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f--qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  414 M-ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF--QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh--eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            1 222222222222  122333444444444332222223  2345667888885 799999999999999999999987


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHHhh--cCCcccc
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF--STGEKVV  300 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~--~~~~~~~  300 (301)
                       ...+..-....+. -+++.+++.+..+.+  +|++|++
T Consensus       491 -~~~e~s~sl~i~v-y~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  491 -MRAELSTSLPIFV-YGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             -HHhccceeehHHH-HHHHHHHHHHHheeeeeccCCCCC
Confidence             3323222223333 344555555555554  8888875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.54  E-value=4.5e-12  Score=119.30  Aligned_cols=287  Identities=16%  Similarity=0.159  Sum_probs=144.1

Q ss_pred             CchhhhHhhccCcc--hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCC---
Q 022198            2 PAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---   76 (301)
Q Consensus         2 p~~~~~i~~~~p~~--~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~---   76 (301)
                      |+..++++|.+|++  +|+++.++++.+.++|..+|+.+++++.+++|||+.|++.++ +++..++.+...++..++   
T Consensus       124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~  202 (489)
T PRK10207        124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGS  202 (489)
T ss_pred             CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCC
Confidence            67789999999887  558899999999999999999999999999999999998533 433222211111111111   


Q ss_pred             CCCC-CHHHHHHH------------Hhc-cCCCCCC-----------------CCCChHHhhcChhHHHHHHH-HHhhHH
Q 022198           77 DPQL-RPAEKKLI------------VSS-CASKEPV-----------------KTIPWGLILSKPPVWALIVS-HFCHNW  124 (301)
Q Consensus        77 ~~~~-~~~~~~~~------------~~~-~~~~~~~-----------------~~~~~~~ll~~~~~~~~~~~-~~~~~~  124 (301)
                      +++- +.+..+..            ... .......                 .+..-++++|+|.+....+. .....+
T Consensus       203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~  282 (489)
T PRK10207        203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFY  282 (489)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1100 00100000            000 0000000                 00000135566655443322 122233


Q ss_pred             HHHH-HHHhHHHHHHHHhCCCcc----hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198          125 GTFI-LLTWMPTYYNQVLHFNLT----ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL  199 (301)
Q Consensus       125 ~~~~-~~~wlp~~l~~~~g~s~~----~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ..|. ..+-+|.|.++..+.+..    ....+..+..+...+..++.+++.||+++|+.......|......+...+...
T Consensus       283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~  362 (489)
T PRK10207        283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLT  362 (489)
T ss_pred             HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3333 446777787754333211    12333333445666788888999999988753111111211111111111110


Q ss_pred             -----HHhhcc---CChHHHHHH-HHHHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc-
Q 022198          200 -----TQLSHV---DSPAMAVLC-MACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-  268 (301)
Q Consensus       200 -----~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~-  268 (301)
                           ......   .+..+.+.. ...+.+-.... +...+.. ...+++.+|.++|+.+...++|+.++..+...... 
T Consensus       363 ~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~-~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~  441 (489)
T PRK10207        363 AAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFIS-ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVP  441 (489)
T ss_pred             HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 111111   122222211 22222222222 2222322 33455789999999999888888888777654421 


Q ss_pred             ---------cCcchHHHHHHHHHHHHHHHHH
Q 022198          269 ---------HGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       269 ---------~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                               ...+...|...+...+++.+++
T Consensus       442 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~  472 (489)
T PRK10207        442 DNITDPLETLPVYTNVFGKIGLVTLGVAVVM  472 (489)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                     0124566666655555544443

>PRK09669 putative symporter YagG; Provisional

Probab=99.54  E-value=2.3e-12  Score=119.97  Aligned_cols=243  Identities=14%  Similarity=0.118  Sum_probs=131.9

Q ss_pred             hhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-------hcCCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198            5 NNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE   76 (301)
Q Consensus         5 ~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~   76 (301)
                      .++.+|+. +++||++..++-..+..+|..+++.+...+..       ..|||..+.+.+++..+.........+|+++.
T Consensus       131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~  210 (444)
T PRK09669        131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP  210 (444)
T ss_pred             HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC
Confidence            46778887 66899998888887777777776654433332       35799898888877655433322233332111


Q ss_pred             CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198           77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW  156 (301)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~  156 (301)
                      +    ++          ++.+ ...++++++|||+++......++...+...... ...|+.+..--+.+..+.+.....
T Consensus       211 ~----~~----------~~~~-~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~  274 (444)
T PRK09669        211 E----VD----------NSSS-VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGM  274 (444)
T ss_pred             C----Cc----------CCCC-HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHH
Confidence            0    00          0000 112467789999988877666654444433333 334444322212233334444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhh
Q 022198          157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQ  234 (301)
Q Consensus       157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
                      +...++.++.++++||+++|+.       ..... .......... +...++.... +.....+.+.+... +..++...
T Consensus       275 i~~ii~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~am~a  345 (444)
T PRK09669        275 IAGLFGALLSERLLGKFDRVRA-------FKWTIVAFVILSALIF-FIPPSNVWLIFALNILFNFIQNLTT-PLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHH-HhCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            7778899999999999986521       11111 1111111111 1112233222 22222222222111 12222222


Q ss_pred             ccC--------CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          235 DIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       235 ~~~--------p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      |..        .+..|...+..+...++|.++++.+.|.++|..|+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            221        23457888899999999999999999999987555

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.53  E-value=1.2e-12  Score=121.21  Aligned_cols=245  Identities=18%  Similarity=0.234  Sum_probs=153.0

Q ss_pred             hhhHhhccC-cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------CCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198            5 NNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAE   76 (301)
Q Consensus         5 ~~~i~~~~p-~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~   76 (301)
                      .++..|..+ ++||.+..+.-+....+|..+...+.+.+.+.+       |||+.+.+.+++.++...+.....+|++++
T Consensus       125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~  204 (428)
T PF13347_consen  125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE  204 (428)
T ss_pred             hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccc
Confidence            467788887 579999999999988888876655555554322       699999988887766544444444441111


Q ss_pred             CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198           77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW  156 (301)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~  156 (301)
                      .   ++++          ++..-+.++++++|||+++...+..++...+.....+..+-|.+...|.+ ...+.+.....
T Consensus       205 ~---~~~~----------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~  270 (428)
T PF13347_consen  205 V---TEQE----------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFF  270 (428)
T ss_pred             c---cccc----------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence            1   1100          11111235788999999998888888877777777777877888777777 55666667778


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhc
Q 022198          157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++..++.++.++++||+|+|+.-...      ........+....... .+.... +.....+.+.+... ...++...|
T Consensus       271 ~~~~v~~~~~~~l~~r~gk~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad  342 (428)
T PF13347_consen  271 VASIVGSPLWGRLSKRFGKKKVYIIG------LLLAALGFLLLFFLGP-GSPWLVLILFILAGIGYGAFF-VIPWAMLAD  342 (428)
T ss_pred             HHHHHHHHHHHHHHHHccceeehhhh------HHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhcccc-ccccccccc
Confidence            89999999999999999877432111      0111111111111211 233222 22222233322221 111222222


Q ss_pred             c--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          236 I--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       236 ~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      .        ..+..|...++.+...+++.++++.+.|.+++..|
T Consensus       343 ~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  343 VIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             chhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            1        12456999999999999999999999999887643

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.51  E-value=7.6e-13  Score=123.54  Aligned_cols=172  Identities=14%  Similarity=0.159  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTVRKIMQ  188 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~~~~~~~~~~~  188 (301)
                      +.++..+...++..+.+|++..|+|.|+++++|+|..+++.+.........++.+++|+++||+ |||+        .+.
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr--------~il   80 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM--------AVM   80 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--------HHH
Confidence            3566666666777889999999999999999999999999998888888899999999999999 8662        111


Q ss_pred             HHhhHHHHHHHHHhhcc-CC-hHHHHHHHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhHHHhHh
Q 022198          189 SIGFLGPAFFLTQLSHV-DS-PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                       .+.+..++........ .+ ....+.......+.+.+ .+...+...|..|   ++|.++.++.+..+++|+.++|.+.
T Consensus        81 -iG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         81 -LGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             -HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence             1111111111111111 11 11111111111222211 1212233344444   2688889999999999999999999


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      |++.++.||+.+|...++..+++.+.+.
T Consensus       159 g~L~~~~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        159 GYAQEEYSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence            9999988999999887766666655543

>PRK10054 putative transporter; Provisional

Probab=99.51  E-value=8.6e-13  Score=121.02  Aligned_cols=172  Identities=14%  Similarity=0.075  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      |.++.+.+..++...+.+....++|.|+++++|+|..+.++......+++.++.++.|+++||+++|+..        . 
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~--------~-   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM--------L-   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH--------H-
Confidence            3466667777888888888999999999999999999999999998999999999999999999876321        1 


Q ss_pred             HhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          190 IGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .+.+...+........++....+.+. ..+.+...+ .+.......|. ++++|+.+.++.+...++|+.++|.+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF-STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111112222332222221 111111111 11122222333 4567899999999999999999999999987


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          268 QHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       268 ~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      + .+|+..|...+++.+++.+....
T Consensus       157 ~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        157 M-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             H-hccCcHHHHHHHHHHHHHHHHHH
Confidence            6 47999998887777776544433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.48  E-value=3.4e-12  Score=120.51  Aligned_cols=173  Identities=15%  Similarity=0.192  Sum_probs=110.0

Q ss_pred             hhcChh-HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHH
Q 022198          106 ILSKPP-VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV  183 (301)
Q Consensus       106 ll~~~~-~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~  183 (301)
                      ++|+|+ ++..++..++...++|++..|+|.|+++++|+|.++++..............+++|+++|| +|||+.     
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-----   90 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-----   90 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-----
Confidence            668874 7787888888888999999999999999999999998887766554555556789999999 587621     


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcc-CChHHHHH-HHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhH
Q 022198          184 RKIMQSIGFLGPAFFLTQLSHV-DSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVF  258 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~  258 (301)
                         +. .+.+..++........ +....... ....+.+.+.+ .+...+...+..|   +.+..+.++.+...++|+.+
T Consensus        91 ---~~-~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~  165 (500)
T PRK09584         91 ---IM-LGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF  165 (500)
T ss_pred             ---HH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence               11 1111111111111121 12212211 11122222211 1122222333333   23455677888999999999


Q ss_pred             HHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198          259 GTAATGYILQHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       259 ~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~  288 (301)
                      +|.+.|++.|+.||+..|.+.++..+++.+
T Consensus       166 gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        166 SMLATPWLAAKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            999999999998999999887765555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.48  E-value=2e-12  Score=121.36  Aligned_cols=175  Identities=13%  Similarity=0.139  Sum_probs=116.0

Q ss_pred             hhcCh-hHHHHHHHHHhhHHHHHHHHHhHHHHHHHH--hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHH
Q 022198          106 ILSKP-PVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVT  181 (301)
Q Consensus       106 ll~~~-~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~--~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~  181 (301)
                      .+++| .++.+....++...++|++..++|.|++++  +|+|..+++.+.....++..++.+++|+++|| +|||+.   
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~---   81 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT---   81 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH---
Confidence            34555 455666677777889999999999999987  89999999999999999999999999999999 787621   


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC----CchHHHHHHHhHHHhhHH
Q 022198          182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP----RYSGVLLGLSNTAGVLAG  256 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~g~a~g~~~~~~~lgg  256 (301)
                           + ..+.+..++.........+.... +.....+.+.+.+ .+...+...+..|    +.|+.+.++.+...++|+
T Consensus        82 -----l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~  154 (475)
T TIGR00924        82 -----M-VLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS  154 (475)
T ss_pred             -----H-HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence                 1 12222222222212222222222 2222222222211 1112222222222    247778899999999999


Q ss_pred             hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          257 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       257 ~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      .++|.+.|++.++.||+..|.+.++..+++.+.+
T Consensus       155 ~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       155 FISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            9999999999998889999988776666654444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09848 glucuronide transporter; Provisional

Probab=99.47  E-value=7.7e-12  Score=116.56  Aligned_cols=163  Identities=17%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHH
Q 022198          102 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT  181 (301)
Q Consensus       102 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~  181 (301)
                      ++++++|||+++...+..++...+.+....+.|.|+++.+|.+....++......++..++.++.++++||+++|+.   
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~---  296 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT---  296 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---
Confidence            46779999999888877777777777777888888988889877666655554456778899999999999986521   


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC--------CCchHHHHHHHhHHH
Q 022198          182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAG  252 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~g~a~g~~~~~~  252 (301)
                          ......+.........+....+...... ....+.+.+... +...+...|..        .+..|...|+.+...
T Consensus       297 ----~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~  371 (448)
T PRK09848        297 ----FLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR  371 (448)
T ss_pred             ----HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence                1111111111111111111112222111 112222222111 11222222221        234699999999999


Q ss_pred             hhHHhHHHhHhhhhcccCcc
Q 022198          253 VLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       253 ~lgg~~~~~l~g~l~~~~~~  272 (301)
                      ++|.++++.+.|.+++..|+
T Consensus       372 klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        372 KCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            99999999999998876443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.9e-12  Score=114.47  Aligned_cols=256  Identities=17%  Similarity=0.125  Sum_probs=158.6

Q ss_pred             chhhhHhhccCcch-hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCC-CCCCC
Q 022198            3 AMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQL   80 (301)
Q Consensus         3 ~~~~~i~~~~p~~~-rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~-~~~~~   80 (301)
                      +..+++++.||+++ |++++|..-...++|..+||++|+.+-+..|-+.+|.+.+++.++-..+-+. ..| |. .+++ 
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~-vi~-p~~~~~~-  255 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL-VIE-PTEMDPD-  255 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh-eeC-ccccCcc-
Confidence            35688999998766 6999999999999999999999999999999999999988887664333222 222 22 1111 


Q ss_pred             CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc-hhhhHhhhhHHHH
Q 022198           81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT-ESGLFCVLPWLTM  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~-~~~~~~~~~~i~~  159 (301)
                                    ++ .+..++.+++++|+.+......-..+...-.+-.-+|+++.|... ++. +.|+......+..
T Consensus       256 --------------~~-~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y  319 (464)
T KOG3764|consen  256 --------------ST-EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSY  319 (464)
T ss_pred             --------------cc-ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccch
Confidence                          00 012356789999999876543332233333344556666777777 555 8899888888999


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhh----hhcchhhhhhc
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF----SQSGLYSNHQD  235 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  235 (301)
                      .++..+.|.++||++.-++...  ...+...+   .  +.......++...++ ...++.+++..    +........-|
T Consensus       320 ~ig~~lfg~la~k~~~~~wl~~--~~gl~~~G---~--~~~~iP~~~~~~~L~-vp~~~l~~~i~~~dasl~P~l~~lvd  391 (464)
T KOG3764|consen  320 AIGTNLFGKLADKYPHLRWLLS--LGGLATVG---V--SSGPIPFATSIAQLW-VPNFGLGFGIGLADASLIPTLGYLVD  391 (464)
T ss_pred             hccCchHHHHHHhcCchhHHHH--HHHHHHHH---H--HhchhHhhhhHHHHh-hhhHHHHHHHHHHHHHHhhhhHHhcc
Confidence            9999999999999974322111  00111111   1  111111111221111 11111111111    11111122112


Q ss_pred             cCC-C---chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHH
Q 022198          236 IAP-R---YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLV  285 (301)
Q Consensus       236 ~~p-~---~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v  285 (301)
                      ... +   .=|...++......+|-++||.++|.+.+..|+.+...+.+...++
T Consensus       392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            211 1   3478888889989999999999999999998887766555555444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.43  E-value=8.4e-17  Score=149.73  Aligned_cols=289  Identities=14%  Similarity=0.101  Sum_probs=158.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP   78 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~   78 (301)
                      +....++.|..|+|+||+..++.+.+..+|..++..++....+   .++||..+....+++++. .+.....||+|+..-
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL~  199 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWLL  199 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceec
Confidence            4567889999999999999999999999999988887765543   356999999866666543 344456799997421


Q ss_pred             ---CCCHHHHHHHH-------h-c-cCCCCC-----CCCCChHHhhcChhH-H---HHHHHHHhhHH-HHHHHHHhHHHH
Q 022198           79 ---QLRPAEKKLIV-------S-S-CASKEP-----VKTIPWGLILSKPPV-W---ALIVSHFCHNW-GTFILLTWMPTY  136 (301)
Q Consensus        79 ---~~~~~~~~~~~-------~-~-~~~~~~-----~~~~~~~~ll~~~~~-~---~~~~~~~~~~~-~~~~~~~wlp~~  136 (301)
                         +.++.++....       + + .+.+++     ..+.+++++++++.. +   .......+... +.+....|.|.+
T Consensus       200 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i  279 (451)
T PF00083_consen  200 SKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI  279 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence               11111111000       0 0 000000     011346778877542 1   11222222222 333444555555


Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH--HhhccCC----hHH
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDS----PAM  210 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~  210 (301)
                      + +..|.+..  -.......+...++.+++.++.||+|||+......      .......+.+.  .....+.    ...
T Consensus       280 ~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  280 F-ENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL------LLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             c-cccccccc--ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence            5 45577766  22333444566678888889999999875332211      01111111110  0111111    111


Q ss_pred             HHHHHHHH-HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198          211 AVLCMACS-QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~  288 (301)
                      .+.+.... ..+.....+..+....|..| +.|+++.++.+..+++++.++|.+...+.+..+-...+.+.+++.+++.+
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i  430 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII  430 (451)
T ss_pred             cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence            11111111 11110111222344467766 58999999999999999999999988888875434444444444444443


Q ss_pred             HHHh--hcCCcccc
Q 022198          289 VWNL--FSTGEKVV  300 (301)
Q Consensus       289 ~~~~--~~~~~~~~  300 (301)
                      ....  .+|+++++
T Consensus       431 ~~~~~lpET~g~~l  444 (451)
T PF00083_consen  431 FVYFFLPETKGKTL  444 (451)
T ss_pred             heeEEEeeCCCCCH
Confidence            3333  37777765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=6.5e-12  Score=116.02  Aligned_cols=181  Identities=16%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198          105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR  184 (301)
Q Consensus       105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~  184 (301)
                      +.+|+|++|...+.+++...++.....++|.|+++++|+|+.+.|+......++..++.++.|+++||+|+|+..     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~-----   79 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL-----   79 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            367888999988888887777778899999999999999999999999999999999999999999999976321     


Q ss_pred             HHHHHHhhHHHHHH-HHHhhccC--ChHHHHHHHHHHHhhhh-h-hhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHH
Q 022198          185 KIMQSIGFLGPAFF-LTQLSHVD--SPAMAVLCMACSQGTDA-F-SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG  259 (301)
Q Consensus       185 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~  259 (301)
                        ............ ........  .......+.......+. + ..........+..++.++...|..+..+++|..++
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~  157 (420)
T PRK09528         80 --LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALC  157 (420)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHH
Confidence              111111100000 00000000  00011111111111111 0 00011111111123445667778888889999999


Q ss_pred             HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      |.+.|.+.+. +|+..|.+.++..+++.+.+...
T Consensus       158 ~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        158 AFIAGILFNI-NPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcc
Confidence            9999999876 68888888776666655554443

>PRK11462 putative transporter; Provisional

Probab=99.41  E-value=6.7e-11  Score=110.66  Aligned_cols=238  Identities=10%  Similarity=0.034  Sum_probs=127.5

Q ss_pred             hhHhhccC-cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------cCCchhHHhhhhhHHHHHHHHhhhccCCCCCC
Q 022198            6 NILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED   77 (301)
Q Consensus         6 ~~i~~~~p-~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~   77 (301)
                      ++.+|..+ +|||++..++-+.+.++|..+++.+...+.+.       .||+....+.+++.++...+.....+|+++.+
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~  211 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP  211 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC
Confidence            56677775 89999999999999999887777665555443       36888777777766554323332233322111


Q ss_pred             CCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHH---HHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198           78 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG---TFILLTWMPTYYNQVLHFNLTESGLFCVL  154 (301)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~---~~~~~~wlp~~l~~~~g~s~~~~~~~~~~  154 (301)
                          ++           +.+ .+..++.+++||+++......++...+   ..+...+..+|.   .|. ....+.+...
T Consensus       212 ----~~-----------~~~-~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~-~~~~~~~l~~  271 (460)
T PRK11462        212 ----PT-----------TTS-MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI---LGT-PEVFVAFLTT  271 (460)
T ss_pred             ----cc-----------CCC-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCC-hHHHHHHHHH
Confidence                00           000 011356688898887665544444333   333444444544   332 2333445556


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH-HHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhh
Q 022198          155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP-AFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSN  232 (301)
Q Consensus       155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (301)
                      ..++..++.+++++++||+++|+.       .......... .+..... ...+... .+.....+.+.+... ...++.
T Consensus       272 ~~i~~iig~~l~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~-~l~~~m  342 (460)
T PRK11462        272 YCVGNLIGSALAKPLTDWKCKVTI-------FWWTNALLAVISLAMFFV-PMQASITMFVFIFVIGVLHQLVT-PIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            677888999999999999986521       1111111111 1111111 1112211 111111222221111 111222


Q ss_pred             hh---c---cCC--CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          233 HQ---D---IAP--RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       233 ~~---~---~~p--~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      ..   |   ...  +..|...+......++|.++++.+.|.+++..|+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22   1   111  2346666777788999999999999998876444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.39  E-value=2.1e-11  Score=114.42  Aligned_cols=250  Identities=13%  Similarity=0.054  Sum_probs=135.5

Q ss_pred             hhhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------cCCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198            4 MNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA   75 (301)
Q Consensus         4 ~~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~   75 (301)
                      -.++..|.. +++||.+..++-....++|..+...+...+.+.       .||+....+.+++.++.........+|+++
T Consensus       127 ~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~  206 (473)
T PRK10429        127 FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS  206 (473)
T ss_pred             HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC
Confidence            346778888 699999999987777777755554444333222       357777766666554432222222444321


Q ss_pred             CCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           76 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      .+ +.++++         +++...+..++.+++||+++...+..++.....+......+.|.+.. .-+....+.+....
T Consensus       207 ~~-~~~~~~---------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~~~~~~~~~~  275 (473)
T PRK10429        207 SD-NQVSAE---------GSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-IGDADLFPYYLSYA  275 (473)
T ss_pred             cc-cccccc---------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-CCCHHHHHHHHHHH
Confidence            11 000000         00010112355677999988877777766666666666665444433 33455566666656


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHHHHHHHHh--hccCChHHHHHH-HHHHHhhhhhhhcchhh
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQL--SHVDSPAMAVLC-MACSQGTDAFSQSGLYS  231 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  231 (301)
                      .++..++.++.++++||+|+|+.       .+..... +...+.....  ....+....+.. ...+.+.+... ...++
T Consensus       276 ~i~~ii~~~~~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~-~~~~a  347 (473)
T PRK10429        276 GAANLVTLILFPRLVKSLSRRIL-------WAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFW-VLQVI  347 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHH-------HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            67888999999999999987621       1111111 1111111111  112222222211 11122222111 11122


Q ss_pred             hhhcc--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          232 NHQDI--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       232 ~~~~~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      ...|.        ..|..|...+..+...+++.++++.+.|++++..|+
T Consensus       348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22222        123468899999999999999999999999886444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.39  E-value=2e-10  Score=102.89  Aligned_cols=277  Identities=15%  Similarity=0.166  Sum_probs=171.4

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhH---HhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF---YSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F---~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      .++++|..|+|+|++++++..+-.-+|.+++..+.+.+.+.+.=.-..   ...+.+.++...+.++  ..||++++.-+
T Consensus       111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w--g~E~r~~~~~~  188 (403)
T PF03209_consen  111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW--GQEPRRSRRAA  188 (403)
T ss_pred             HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCccccc
Confidence            578999999999999999999999999999999888888776522222   2223333222222222  22333221110


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                      ++         +++++.-...|+++.++|+..+.+...+..+.+++.--.-+=+|=-+.+|+|+.|+..+......+..+
T Consensus       189 ~~---------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~  259 (403)
T PF03209_consen  189 AA---------ERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLL  259 (403)
T ss_pred             CC---------CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHH
Confidence            00         011111123577888999888877766666667666667777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH-HHHHHHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  240 (301)
                      |..+.|++..|..++  +..  .+ ..+.........+.......++. +.......+++.+.++...+...+.-..+++
T Consensus       260 G~~~~g~~l~~~~~~--~~~--a~-~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~  334 (403)
T PF03209_consen  260 GMLLAGFLLSRRLGK--KRT--AA-LGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR  334 (403)
T ss_pred             HHHHHHHHhcCCCCc--hHH--HH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc
Confidence            999999887742111  111  11 11111111111111122222332 2333344455566666555444443334667


Q ss_pred             hHHHHHHHhHHHhhHHhHHHhHhhhhccc----------CcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198          241 SGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGTAVWNLFSTGE  297 (301)
Q Consensus       241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~----------~~~~~~f~~~~~~~~v~~~~~~~~~~~~  297 (301)
                      .|+..|.=...+.++-.++..+.|.+.|.          .+|..+|.+=+...++++.+...++++|
T Consensus       335 aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~~~~  401 (403)
T PF03209_consen  335 AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRLDRRE  401 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            88988888888888888888888888773          2356677766667777777766666544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.38  E-value=2.3e-11  Score=112.90  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+..++.....+.+..++|.+.+ ++|+|..+.+++.....++..++.++.|+++||+|+|+..         ....+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~---------~~~~~~   97 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM---------GIGLIA   97 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH---------HHHHHH
Confidence            344444444445567788888776 5899999999999999999999999999999999876321         111111


Q ss_pred             HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      ..+........++....... ...+.+.+ ...+.......+..| ++|+.+.++.+....+|+.++|.+.+++.++.+|
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            11111112222233222221 11122111 111222233344444 6899999999999999999999999999998899


Q ss_pred             hHHHHHHHHHHHHHHH
Q 022198          273 DDVFKVSVGLYLVGTA  288 (301)
Q Consensus       273 ~~~f~~~~~~~~v~~~  288 (301)
                      +..|.+.++..++..+
T Consensus       177 ~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        177 RYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887665554433

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=7e-11  Score=110.68  Aligned_cols=171  Identities=16%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      .+|...+..++.....+.+..++|.+.+ ++|.|+.+.++......++..++.++.|+++||+|||+.        +. .
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~--------~~-~   80 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI--------FF-T   80 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--------HH-H
Confidence            5666677777777777788899999886 589999999998888888999999999999999997631        11 1


Q ss_pred             hhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          191 GFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      .....++.........+....+.... .+.+.+.. .+.......+..| ++++.+.++.+...+++..++|.+.|.+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         81 AIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            11111111111112233333222211 12222211 1112223334444 678999999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHh
Q 022198          269 HGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       269 ~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      +.+|+..|.+.....+++.+....
T Consensus       160 ~~gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        160 YASWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHH
Confidence            989999998876655555444333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.1e-11  Score=103.41  Aligned_cols=265  Identities=19%  Similarity=0.179  Sum_probs=154.7

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHh--hhccCCC---CCCCC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL--SKAHSSP---AEDPQ   79 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~--~~~~~~p---~~~~~   79 (301)
                      +++...||+.||-+.+.|+..+..-+|+..-..+.+++.+..|   .++-....+.+...+.+  ..-+.+-   .....
T Consensus       158 N~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~---~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~  234 (459)
T KOG4686|consen  158 NKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG---RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL  234 (459)
T ss_pred             cceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5788899999999999999999888888777767777655322   11100011111000000  0000000   00000


Q ss_pred             CC-HHHHHHHHhc-cCCCCCCCCCChHHhh-cChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198           80 LR-PAEKKLIVSS-CASKEPVKTIPWGLIL-SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW  156 (301)
Q Consensus        80 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~  156 (301)
                      .+ ++|+...+++ ...++|+    +.+.. -.|++|...+..++.....+-+.+--|.+.++++|+|+.+++.+.+...
T Consensus       235 ~D~rAerilh~e~g~~Ge~pk----Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy  310 (459)
T KOG4686|consen  235 SDDRAERILHLEEGFLGEEPK----LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVY  310 (459)
T ss_pred             hhhHHHHHHhhhcCcccCCcc----cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence            11 1122111111 1111121    11122 2368888888777777788888999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhcc
Q 022198          157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI  236 (301)
Q Consensus       157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
                      ....+..++.|.++||+|++-+  +....   ++..++. =....+ ...+|+....++.......+++   +|...+..
T Consensus       311 ~Isav~spvfg~i~Dk~G~n~~--wv~~a---~~~tl~~-H~~l~F-t~lsPy~~m~~lGLsysllAcs---lWP~va~~  380 (459)
T KOG4686|consen  311 GISAVLSPVFGAISDKYGFNLW--WVASA---CILTLLG-HSGLFF-TFLSPYTSMTFLGLSYSLLACS---LWPCVASL  380 (459)
T ss_pred             hhhhhhhhhHHHhHhhhcceeh--hHHHH---HHHHHHH-hhhHHh-hhccHHHHHHHHhhhHHHHHHH---Hhhhhhhh
Confidence            8888999999999999986521  11110   1111110 001111 2245655554444332222222   34445556


Q ss_pred             CCC-chHHHHHHHhHHHhhHHhHHHhHhhhhccc-Ccch--HHH-HHHHHHHHHH
Q 022198          237 APR-YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD--DVF-KVSVGLYLVG  286 (301)
Q Consensus       237 ~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~--~~f-~~~~~~~~v~  286 (301)
                      .|+ +-|++.|..+.+.++|-++.|.+.|.++|+ +|+.  -+| +.+....++.
T Consensus       381 vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s  435 (459)
T KOG4686|consen  381 VPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS  435 (459)
T ss_pred             CCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence            665 679999999999999999999999999998 4443  233 3344444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.34  E-value=7e-11  Score=105.63  Aligned_cols=161  Identities=19%  Similarity=0.317  Sum_probs=108.5

Q ss_pred             HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198          117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA  196 (301)
Q Consensus       117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~  196 (301)
                      +..++...........+|.++++++|.|..+.+++.....++..++.++.|+++||+|||+        .+ ..+.+..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--------~l-~~~~~~~~   73 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR--------VL-IIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH--------HH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee--------eE-eehhhhhh
Confidence            3445555566667777877888899999999999999999999999999999999998762        11 12222121


Q ss_pred             HH--HHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          197 FF--LTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       197 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      +.  ...+.  .+....+. ....+.+.+ ...+.......+..| ++|+.+.++.+....+|..++|.+.+.+.++.+|
T Consensus        74 ~~~~~~~~~--~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   74 LGSLLLAFA--SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             HHHHHHHHH--CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             hHHHHhhhh--hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence            11  11111  23222221 122222221 222223334445555 5899999999999999999999999999988889


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 022198          273 DDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       273 ~~~f~~~~~~~~v~~~~  289 (301)
                      +..|.+.+++.+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhh
Confidence            99999988888887664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.34  E-value=6.9e-11  Score=111.29  Aligned_cols=170  Identities=11%  Similarity=0.117  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQ  188 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~~~~~~  188 (301)
                      |.+|..+...++..+++|++..+++.|+++++|++.++++.+.........+..+++|+++|| +|||+.        +.
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~--------~~   85 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT--------IV   85 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH--------HH
Confidence            356666777778889999999999999999999999999988877777777888899999999 887632        11


Q ss_pred             HHhhHHHHHHHHHhhccCC-hHHH-HHHHHHHHhhhhhhhcchhhhhhccCC-C--chHHHHHHHhHHHhhHHhHHHhHh
Q 022198          189 SIGFLGPAFFLTQLSHVDS-PAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP-R--YSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~--~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                       .+.+..++.........+ +... +.....+.+.+.+ .+...+...|..| +  +++.+.++.+...++|..++|.+.
T Consensus        86 -~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~-~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~  163 (489)
T PRK10207         86 -LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF-KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA  163 (489)
T ss_pred             -HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence             111111111111111111 2212 1111112222211 1222233334433 3  346778888999999999999999


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      |++.++.||+.+|.+..+..+++.+.
T Consensus       164 g~l~~~~gw~~~F~i~~i~~~~~~~~  189 (489)
T PRK10207        164 PVIADKFGYSVTYNLCGAGLIIALLV  189 (489)
T ss_pred             HHHHHhhChHHHHHHHHHHHHHHHHH
Confidence            99999989999998865545444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.34  E-value=8.5e-11  Score=108.02  Aligned_cols=170  Identities=16%  Similarity=0.223  Sum_probs=112.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 022198          113 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF  192 (301)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~  192 (301)
                      +......++...+.+.....+|.|+++++|+|..+.|+......+...+..+++|+++||+++|+.        +. .+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~--------l~-~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM--------IV-TGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH--------HH-HHH
Confidence            344556666777888889999999999999999999999998888888889999999999986621        11 111


Q ss_pred             HHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198          193 LGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG  270 (301)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~  270 (301)
                      ...++........++....... ...+.+.+.+ .+...+...+. ++++++.+.++.+...++|..++|.+.|++. +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~  161 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY  161 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            1111111111222333322221 1112221111 12222333344 4578999999999999999999999999998 55


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhh
Q 022198          271 SWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       271 ~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +|+..|.+.+...+++.+....+
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999988777666655443333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=108.26  Aligned_cols=276  Identities=17%  Similarity=0.110  Sum_probs=147.3

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---hcCCchhHHhhhhh----HHHHHHHHhhhccCCCCC
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFYSFGSL----GTVWFTVWLSKAHSSPAE   76 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---~~gWR~~F~~~g~l----~~~~~~~~~~~~~~~p~~   76 (301)
                      +.++++|.+++|+|+++++.+++...+|-++||.+|+++.+   ..| +.+|.....+    ...-......+.||+-+.
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~  219 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPL  219 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence            56899999999999999999999999999999999999988   222 2223221111    111011222234443221


Q ss_pred             CCCCCHHHHHHHHhccCCCCCCCCCCh---HHhhcChhHHH------H-HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc
Q 022198           77 DPQLRPAEKKLIVSSCASKEPVKTIPW---GLILSKPPVWA------L-IVSHFCHNWGTFILLTWMPTYYNQVLHFNLT  146 (301)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~------~-~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~  146 (301)
                      +++.  +|....++...+.+...+.++   -.++||++...      . -+..+..+.-+-...+..+.|.++.+|+++.
T Consensus       220 rk~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~  297 (451)
T KOG2615|consen  220 RKRN--DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM  297 (451)
T ss_pred             hhhc--ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh
Confidence            1111  111100100000001111111   12455554322      1 1222333323333344455555788999999


Q ss_pred             hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhh-hhhh
Q 022198          147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGT-DAFS  225 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  225 (301)
                      |.|.+.+..++.+.+....-.+..||.+  +....   .......+..+++.+  ......+. .+.+......+ .+..
T Consensus       298 ~~G~vl~~tGl~m~~~ql~~~~~l~~~~--~~~~a---~l~~~l~~~vP~~ll--ls~~~~~~-~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  298 QQGKVLSTTGLLMLVIQLALVPILPRYK--GNIKA---VLLFSLLLIVPAFLL--LSLARTPV-VLYLGSTLKSFSTASV  369 (451)
T ss_pred             hheeeeehhhHHHHHHHHhccccccccc--cchhh---HHHHHHHHHHHHHHH--Hhccccch-hhhHHHHHHHHHHHHh
Confidence            9999998888877777766666666653  11111   111222223333332  22333332 22222111111 2333


Q ss_pred             hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHH
Q 022198          226 QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       226 ~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      .+.++...+...| +++|+.+|+....+.++=++||.+.|.+... .+-+..+...+.+.+++....
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~~~l~  436 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIPMMLL  436 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHHHHHH
Confidence            4555666666655 5899999999999999999999999998876 333333333334444443333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=4.4e-11  Score=107.57  Aligned_cols=248  Identities=17%  Similarity=0.142  Sum_probs=153.2

Q ss_pred             hhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------hcCCch--hHHhhhhhHHHHHHHHhhhccCCCCCC
Q 022198            6 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGWPS--VFYSFGSLGTVWFTVWLSKAHSSPAED   77 (301)
Q Consensus         6 ~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------~~gWR~--~F~~~g~l~~~~~~~~~~~~~~~p~~~   77 (301)
                      ++.+-|||++||..|..+-..+.++|.++|.++.+.+++      +..|..  .|+..+.+..+.+.+.....++.|+.+
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP  242 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP  242 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            677889999999999999999999999999988888875      346776  466555555444444444455666666


Q ss_pred             CCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198           78 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL  157 (301)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i  157 (301)
                      |..+.+...        +.+ -....+++++|+++....+.+......+|+..+.+-.-+. ..|++...+|+...+..+
T Consensus       243 ps~s~~~~~--------~~~-f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv  312 (480)
T KOG2563|consen  243 PSASQAALQ--------DAS-FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIV  312 (480)
T ss_pred             CchhHhhhh--------cCc-HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHH
Confidence            554332111        000 0113567999999988887777666666666666543443 458888899999998899


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccCChH-HHHHHHHH-HHhhhhhhhcch-hhh-
Q 022198          158 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVDSPA-MAVLCMAC-SQGTDAFSQSGL-YSN-  232 (301)
Q Consensus       158 ~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-~~~-  232 (301)
                      ++.+++.+.|.+.||..+  .+     +... +........ +........+. .++.+..+ .+++......++ +-. 
T Consensus       313 ~Gmlga~~~gii~Dktk~--fk-----~~~~-v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~Elg  384 (480)
T KOG2563|consen  313 AGMLGALASGIIADKTKK--FK-----LTTL-VLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELG  384 (480)
T ss_pred             HHHHHHHHHHhhhhhhhh--HH-----HHHH-HHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeee
Confidence            999999999999999742  11     1111 111111111 11111111111 11112111 122221222211 111 


Q ss_pred             hhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          233 HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       233 ~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      ....+|..=++..|+.|..+++-+.+-..+-+.+.+..+
T Consensus       385 vE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  385 VETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             eeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            223467666777899999999999999999999888744

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.33  E-value=7.1e-11  Score=112.04  Aligned_cols=171  Identities=12%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC-
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR-   81 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~-   81 (301)
                      +..+++|..|++.||...+..+....+|..++..++....+. ++||..+.+..+.+++..+. +...||+|+...+.. 
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~  241 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGR  241 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCC
Confidence            457899999999999999999999999999996665555433 69999998866666554444 667789886321111 


Q ss_pred             HHHH-HHH---Hh---------------cc--CCCCCCCCCChHHhhcChh----HHHHHHHHHhhHHHHHHHHHhHHHH
Q 022198           82 PAEK-KLI---VS---------------SC--ASKEPVKTIPWGLILSKPP----VWALIVSHFCHNWGTFILLTWMPTY  136 (301)
Q Consensus        82 ~~~~-~~~---~~---------------~~--~~~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~  136 (301)
                      .+|. +..   +.               +.  ..+...++..++++++...    .....+..+.+..+......|.+.+
T Consensus       242 ~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i  321 (513)
T KOG0254|consen  242 LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI  321 (513)
T ss_pred             hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence            1111 110   00               00  0000011123555554211    2223333444445566667888888


Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  177 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~  177 (301)
                      +++. |.+... ........+...++..++.++.||+|||.
T Consensus       322 f~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~  360 (513)
T KOG0254|consen  322 FKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK  360 (513)
T ss_pred             HHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            7654 776543 44455566778888899999999998774

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.33  E-value=7.4e-11  Score=108.08  Aligned_cols=174  Identities=14%  Similarity=0.093  Sum_probs=106.6

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198          109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ  188 (301)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~  188 (301)
                      ||.+|.....+++...++.....++|.|+++++|+|+.+.+.......++..++.++.|+++||+|||+....      .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~------~   74 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW------I   74 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH------H
Confidence            5788888888888777778888999999999999999999999999999999999999999999997632110      0


Q ss_pred             HHhhHHHHHHHHHhhccC---ChHHHHHHH-HHHHhhhh-hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHh
Q 022198          189 SIGFLGPAFFLTQLSHVD---SPAMAVLCM-ACSQGTDA-FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                      ..................   .......+. ....+... ...+..-....+..+ .++...|.....+++|..++|.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~g~~~~  153 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-NSNFEYGKARMFGCVGWALCASIA  153 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-hcccccchhhhhcccHHHHHHHHH
Confidence            011111111111011110   001111111 11111111 111111111122222 223445666777889999999999


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      |.+.+. +|+..|.+.+.+.++..+..
T Consensus       154 g~l~~~-~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       154 GILFSI-DPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             hhhhcc-CchHHHHHHHHHHHHHHHHH
Confidence            988776 79999988777666655444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.31  E-value=1e-10  Score=105.82  Aligned_cols=167  Identities=10%  Similarity=0.034  Sum_probs=103.7

Q ss_pred             HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198          117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA  196 (301)
Q Consensus       117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~  196 (301)
                      +.+++...+.......+|.|+++++|.|..+.++......+...+..++.|+++||+|||+       ..+. .......
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-------~~~~-~~~~~~~   75 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK-------GLIL-FCCLLAA   75 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-------HHHH-HHHHHHH
Confidence            3455556667777888999999999999999999999888889999999999999998763       1111 1111111


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCC-CchHH--HHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          197 FFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAP-RYSGV--LLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~--a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      +........++....+.. ....+. .....+...+...+..| +.++.  ..+..+....+|..++|.+.+++.++.+|
T Consensus        76 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~  154 (375)
T TIGR00899        76 LACLLFAWNRNYFLLLVL-GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF  154 (375)
T ss_pred             HHHHHHHhcchHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence            111111222333222211 111111 11111222222233333 34443  25677777889999999999999998889


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 022198          273 DDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       273 ~~~f~~~~~~~~v~~~~~~~  292 (301)
                      +..|.+.+.+.++..+....
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999887776666554433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.29  E-value=8.9e-11  Score=108.31  Aligned_cols=186  Identities=16%  Similarity=0.126  Sum_probs=118.0

Q ss_pred             ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHH
Q 022198          102 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT  181 (301)
Q Consensus       102 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~  181 (301)
                      |++.+.|+|.++..++..++...+.......+|.+.++ .+.|+.+.++......++..++.++.|+++||++||+....
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489          9 DLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            55656678888877777777667766777888888765 57799999999999999999999999999999988753322


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHH
Q 022198          182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFG  259 (301)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~  259 (301)
                      ..  ....+.+....  ...+....+....... ...+.+.+ ...+.......+.. +++++.+.++.+...++|..++
T Consensus        88 ~~--~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  162 (417)
T PRK10489         88 AR--GTCGLGFIGLA--LNAFLPEPSLLAIYLLGLWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS  162 (417)
T ss_pred             hH--HHHHHHHHHHH--HHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence            10  01111111110  0011112222222111 11111111 11122223333443 4678999999999999999999


Q ss_pred             HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      |.+.|.+.+..+|+..|.+.+...+++.+.....
T Consensus       163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        163 PALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998789988887766666655544333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.29  E-value=9.4e-10  Score=104.34  Aligned_cols=252  Identities=17%  Similarity=0.175  Sum_probs=141.7

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHH-HhhhccCC-CCCCC-CCC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV-WLSKAHSS-PAEDP-QLR   81 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~-~~~~~~~~-p~~~~-~~~   81 (301)
                      ...++|..|.|.|+...++.....-.....++.++..+...-+|||.|++..+...+.... .+.+.|++ ++.+. +.+
T Consensus       152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s  231 (599)
T PF06609_consen  152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLS  231 (599)
T ss_pred             HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCc
Confidence            3458999999999988877766554444456677766666779999999876654433222 22222221 11111 111


Q ss_pred             H-HHHHHH----------------H---------------------------------hc-cC-CCCCCCCCChHHhhcC
Q 022198           82 P-AEKKLI----------------V---------------------------------SS-CA-SKEPVKTIPWGLILSK  109 (301)
Q Consensus        82 ~-~~~~~~----------------~---------------------------------~~-~~-~~~~~~~~~~~~ll~~  109 (301)
                      + ++-+..                .                                 -| .. .++|  -.|+ ++||+
T Consensus       232 ~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~P--l~P~-~Lf~~  308 (599)
T PF06609_consen  232 KREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDP--LFPH-RLFKD  308 (599)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCC--cCCH-HHhcc
Confidence            1 111110                0                                 00 00 0011  1234 48888


Q ss_pred             hh-HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc---hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198          110 PP-VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK  185 (301)
Q Consensus       110 ~~-~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~---~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~  185 (301)
                      ++ +....+..+.....+|+...+-|+.....++-|+.   +.++...+..++..+|..+.|.+..|.++  .      |
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~--~------K  380 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH--I------K  380 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc--h------h
Confidence            54 55555555555556788888888988888888764   67788888888888899999998877642  1      1


Q ss_pred             HHHHHhhHHHHHH--HHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHh
Q 022198          186 IMQSIGFLGPAFF--LTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTA  261 (301)
Q Consensus       186 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~  261 (301)
                      +...++.+....+  .......++....+.+ ...+++++....... ...+-. +++..|++.|+..++..+||+++..
T Consensus       381 w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~a  459 (599)
T PF06609_consen  381 WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYA  459 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHH
Confidence            2222222211111  1111223333332222 222333332222211 122223 3457899999999999999999988


Q ss_pred             Hhhhhcc
Q 022198          262 ATGYILQ  268 (301)
Q Consensus       262 l~g~l~~  268 (301)
                      +..-+..
T Consensus       460 Iy~~I~~  466 (599)
T PF06609_consen  460 IYNAIFT  466 (599)
T ss_pred             HHHHHHH
Confidence            7766554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.28  E-value=1.3e-10  Score=106.51  Aligned_cols=171  Identities=18%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      +++....+..+....+.......+|.++++++|.|..+.++......++..++.++.|+++||+|||+.....      .
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~------~   88 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG------L   88 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH------H
Confidence            4555566666666667666778899999999999999999999999999999999999999999987432111      0


Q ss_pred             HhhHHHHHHHHHhhccCC-----hHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhH
Q 022198          190 IGFLGPAFFLTQLSHVDS-----PAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAA  262 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l  262 (301)
                      +......+........++     ....+.. ...+.+.+.. .+.......+. ++++|+.+.++.+....+|..++|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  167 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL  167 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence            111111111111111111     1111111 1112221111 11122222233 45688999998888888888999999


Q ss_pred             hhhhcccCcchHHHHHHHHHHHHHH
Q 022198          263 TGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       263 ~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      .+.+.++.+|+..+.+.....++..
T Consensus       168 ~~~l~~~~g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        168 GVLLYHWGGLAGLGLLIMLLALLGL  192 (399)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999998889888776655544443

>PRK11043 putative transporter; Provisional

Probab=99.28  E-value=3.6e-10  Score=103.64  Aligned_cols=162  Identities=14%  Similarity=0.082  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHhHHHH--HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198          122 HNWGTFILLTWMPTY--YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL  199 (301)
Q Consensus       122 ~~~~~~~~~~wlp~~--l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      .+.+++....+.|.+  +++++|.|.++.++......++..++.++.|+++||++||+.        +. .......+..
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~~~~   85 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV--------LL-AGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH--------HH-HHHHHHHHHH
Confidence            344555666677766  678899999999999999999999999999999999987631        11 1111111111


Q ss_pred             HHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198          200 TQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK  277 (301)
Q Consensus       200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~  277 (301)
                      ......++....... ...+.+.+... ....+...+.. +++++...+..+....+++.++|.+.|++.++.+|+..|.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~  164 (401)
T PRK11043         86 LGMLWVESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA  164 (401)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            111122233222221 11122211111 11112233444 4556777788888888999999999999999989999998


Q ss_pred             HHHHHHHHHHHHHHhh
Q 022198          278 VSVGLYLVGTAVWNLF  293 (301)
Q Consensus       278 ~~~~~~~v~~~~~~~~  293 (301)
                      +.+.+.++..+....+
T Consensus       165 ~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        165 TLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            8776666655544333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.27  E-value=1.5e-09  Score=102.62  Aligned_cols=56  Identities=18%  Similarity=0.389  Sum_probs=49.0

Q ss_pred             CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhh
Q 022198            2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS   57 (301)
Q Consensus         2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~   57 (301)
                      |+..++++|++|+++  |.++.++++.+.++|..+|+.+++++.+.+|||+.|.+.++
T Consensus       131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i  188 (500)
T PRK09584        131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV  188 (500)
T ss_pred             CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            566789999998654  56788999999999999999999999999999999998654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.26  E-value=3.4e-10  Score=106.42  Aligned_cols=176  Identities=16%  Similarity=0.098  Sum_probs=101.7

Q ss_pred             hhcChhHHHHH---HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198          106 ILSKPPVWALI---VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  182 (301)
Q Consensus       106 ll~~~~~~~~~---~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~  182 (301)
                      .++++..+...   ...++.....+....++| ++++++|+|..+.++......+++.++.++.|+++||+|+|+.    
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~----  103 (476)
T PLN00028         29 SFARPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG----  103 (476)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH----
Confidence            34555444433   333333333444444444 4567899999999998888888999999999999999997621    


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHH
Q 022198          183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                          +. ...+..++.........+......+ ...+++.+... . ......+.. +++||.+.|+.+..+++|+.+++
T Consensus       104 ----~~-~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~  176 (476)
T PLN00028        104 ----SA-FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-S-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ  176 (476)
T ss_pred             ----HH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-H-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence                11 1111122222112222333322221 22222222111 1 111223444 46899999999888888888887


Q ss_pred             hHhhhhcc----c-----CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          261 AATGYILQ----H-----GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       261 ~l~g~l~~----~-----~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+.+.+.+    .     .||+..|.+.+++.++..+....+
T Consensus       177 ~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        177 LLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            66655432    1     479999998877776665554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.26  E-value=4.3e-10  Score=103.06  Aligned_cols=178  Identities=11%  Similarity=0.077  Sum_probs=106.2

Q ss_pred             hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh-HHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198          106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP-WLTMAFSANLGGWIADTLVSKGLSVTTVR  184 (301)
Q Consensus       106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~-~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~  184 (301)
                      .| |.+.+..++..++...+.......+|.|+++++|.|.++.|+..... .++...+.+.+++ +||+|+|+       
T Consensus        12 ~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~-------   82 (393)
T PRK15011         12 SF-DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK-------   82 (393)
T ss_pred             hc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-------
Confidence            44 55556666667777777777889999999999999999999986544 4466667777777 99999763       


Q ss_pred             HHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-Cch--HHHHHHHhHHHhhHHhHHHh
Q 022198          185 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS--GVLLGLSNTAGVLAGVFGTA  261 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~--g~a~g~~~~~~~lgg~~~~~  261 (301)
                      +.+. ...+..++........++............+......+.......+..+ +.|  +...++.+....+|..++|.
T Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~  161 (393)
T PRK15011         83 SLIV-FCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPP  161 (393)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhH
Confidence            2111 1111111111111122222221111111111111111111222223222 323  44557778888899999999


Q ss_pred             HhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          262 ATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       262 l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.+++.|+.||+..|.+.++..++..+.+..+
T Consensus       162 i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        162 LAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998899999988877776665554444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.26  E-value=6.7e-10  Score=101.78  Aligned_cols=171  Identities=17%  Similarity=0.186  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchh-----hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTES-----GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK  185 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~-----~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~  185 (301)
                      .+...++..++...+......++|.|+++ +|+|..+.     +.......+...++.++.|+++||++||+.       
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------   86 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-------   86 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-------
Confidence            44455566666666777778899999864 79987653     777778888999999999999999987621       


Q ss_pred             HHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhHHHhHh
Q 022198          186 IMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAAT  263 (301)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~~~~l~  263 (301)
                       +. ...+..++........++....+.. ...+.+.+ + .+...+...+ .++++|+.+.++.+....+|..++|.+.
T Consensus        87 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         87 -LL-RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             -HH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             11 1111111111111122222222211 11121111 1 1111222223 3456789999999999999999999999


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.+.++.+|+..|.+.+++.+++.+....+
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998889999988877776665544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.26  E-value=4.1e-10  Score=101.61  Aligned_cols=164  Identities=16%  Similarity=0.155  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      .+|..++.++......+....++|.++++++|+|..+.+++.....++..++.++.|+++||+|||+.        +. .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT--------TT-L   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH--------HH-H
Confidence            34556666666666778889999988999999999999999999999999999999999999987631        11 1


Q ss_pred             hhHHHHHHHHHhhccC-ChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          191 GFLGPAFFLTQLSHVD-SPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      ..+..++........+ +....+.. ...+.+.+.+  ........+. ++++|+.+.++.+...++|..+++.+.+.+.
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSF--ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhh--HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            1111111111111222 22222211 1112221111  1112233344 4468899999888777888877777766655


Q ss_pred             c----------cCcchHHH-HHHHHHHHH
Q 022198          268 Q----------HGSWDDVF-KVSVGLYLV  285 (301)
Q Consensus       268 ~----------~~~~~~~f-~~~~~~~~v  285 (301)
                      +          +.+|+..| ...+....+
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHH
Confidence            3          23688887 333444333

>PRK12382 putative transporter; Provisional

Probab=99.25  E-value=4.3e-10  Score=102.79  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198          109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ  188 (301)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~  188 (301)
                      ++.++...+..+....+.......+|.|+++++|.|..+.++......++..++.++.|+++||+|||+.       ...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-------l~~   86 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-------ALQ   86 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-------HHH
Confidence            3455555555555555566667888889999999999999999999999999999999999999997732       111


Q ss_pred             H-HhhHHHHHHHHHhhcc-----CChHHHHH-HHHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhHHH
Q 022198          189 S-IGFLGPAFFLTQLSHV-----DSPAMAVL-CMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       189 ~-~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                      . +......+........     .+....+. -...+.+.+.. .+...+...+ .++++|+.+.+..+....++..++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~  165 (392)
T PRK12382         87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA  165 (392)
T ss_pred             HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence            1 1111111111000010     11111111 11112222111 1111222223 3457899999998888888999999


Q ss_pred             hHhhhhcccCcchHHHHHHHHHHH
Q 022198          261 AATGYILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       261 ~l~g~l~~~~~~~~~f~~~~~~~~  284 (301)
                      .+.+++.++.+|+..+.+.....+
T Consensus       166 ~~~~~l~~~~g~~~~~~~~~~~~~  189 (392)
T PRK12382        166 PLGLLLHSHFGFAALALTTMVLPL  189 (392)
T ss_pred             HHHHHHHhccChHHHHHHHHHHHH
Confidence            999999888889876665444333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.25  E-value=7.5e-12  Score=112.57  Aligned_cols=290  Identities=14%  Similarity=0.147  Sum_probs=174.1

Q ss_pred             CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------------hcCCchhHHhhhhhHHHHHHH
Q 022198            1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------------RFGWPSVFYSFGSLGTVWFTV   65 (301)
Q Consensus         1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------------~~gWR~~F~~~g~l~~~~~~~   65 (301)
                      +|.+.++.+|....++||..++.+.+-..+|...|.+++..+..               ..=||..|.+ |.++.+....
T Consensus       162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~gl-g~vpa~~~ly  240 (538)
T KOG0252|consen  162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGL-GAVPALLVLY  240 (538)
T ss_pred             CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHH-HHHHHHHHHH
Confidence            58899999999999999999999999988998888877665532               1249999997 5555444334


Q ss_pred             HhhhccCCCCCCC----CCCHHHH---HHHHh----cc----CCCCCCCC-CChHHhhcCh---hHHHHHHHHHhhHHHH
Q 022198           66 WLSKAHSSPAEDP----QLRPAEK---KLIVS----SC----ASKEPVKT-IPWGLILSKP---PVWALIVSHFCHNWGT  126 (301)
Q Consensus        66 ~~~~~~~~p~~~~----~~~~~~~---~~~~~----~~----~~~~~~~~-~~~~~ll~~~---~~~~~~~~~~~~~~~~  126 (301)
                      +-..+||+++...    +.+...+   +....    +.    ..+.+... ..+.+.|.++   .+..+....|....++
T Consensus       241 ~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiaf  320 (538)
T KOG0252|consen  241 FRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAF  320 (538)
T ss_pred             hhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4335666554220    1000000   00000    00    00001000 0133333333   3445566667778889


Q ss_pred             HHHHHhHHHHHHHHhCCCcchhhh-----Hhhhh----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH
Q 022198          127 FILLTWMPTYYNQVLHFNLTESGL-----FCVLP----WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF  197 (301)
Q Consensus       127 ~~~~~wlp~~l~~~~g~s~~~~~~-----~~~~~----~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~  197 (301)
                      |+...+....++ ..|+.+++..+     ..-..    ..+.+.|..+..+++|++||+         .+...++....+
T Consensus       321 y~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i  390 (538)
T KOG0252|consen  321 YGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTI  390 (538)
T ss_pred             hccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHH
Confidence            998888888776 45888876666     11111    122334666778899999965         333344444443


Q ss_pred             HHHHhhccCC-h---HHHHHHHHHHHhhhhhh-hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc---
Q 022198          198 FLTQLSHVDS-P---AMAVLCMACSQGTDAFS-QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ---  268 (301)
Q Consensus       198 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~---  268 (301)
                      +........+ .   ...+++....+.++.|. ....+....|..| +.|++.-|+....|..|+.++....+++.+   
T Consensus       391 ~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y  470 (538)
T KOG0252|consen  391 FFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY  470 (538)
T ss_pred             HHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC
Confidence            3333322222 1   11222322222222222 1222333456666 689999999999999999999999999999   


Q ss_pred             --cCcchHHHHHHHHHHHHHHHHHHhh-cCCccccC
Q 022198          269 --HGSWDDVFKVSVGLYLVGTAVWNLF-STGEKVVD  301 (301)
Q Consensus       269 --~~~~~~~f~~~~~~~~v~~~~~~~~-~~~~~~~~  301 (301)
                        ..+...+|++.+.+.+++.+.-.++ +|.+|++|
T Consensus       471 p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  471 PPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLE  506 (538)
T ss_pred             CccccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence              4678889999988888886554444 56666543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.2e-11  Score=105.55  Aligned_cols=157  Identities=11%  Similarity=0.090  Sum_probs=107.7

Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM  210 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (301)
                      +..-+++.++.|+|.+|.|.+.+...+...++..+.|.++||...|.         ++..+++.+++....++.+++...
T Consensus        49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~---------fm~~gLilsai~nil~Gfs~s~~~  119 (448)
T COG2271          49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY---------FMAFGLILSAIVNILFGFSPSLFL  119 (448)
T ss_pred             hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce---------eehHHHHHHHHHHHHHhhhhHHHH
Confidence            34444566787899999999999999999999999999999986552         234555566666555555543322


Q ss_pred             HHHHHHHHHhhhhhhhcchhhh-hhccCCCchHHHHHHHhHHHhhHHhHHHhHh--hhhcccCcchHHHHHHHHHHHHHH
Q 022198          211 AVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT--GYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~--g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      ...+.....-++....++.... .+-.++++||+..++=|+.-|+||++.|.++  +++.++++|+..|++.+++.++..
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            2222222111122222222222 2344567899999999999999999999999  999999999999999877666554


Q ss_pred             HHHHhhcCC
Q 022198          288 AVWNLFSTG  296 (301)
Q Consensus       288 ~~~~~~~~~  296 (301)
                      +......++
T Consensus       200 l~~~~~~rd  208 (448)
T COG2271         200 LILLFLLRD  208 (448)
T ss_pred             HHHHHHhCC
Confidence            444444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.23  E-value=1.9e-10  Score=107.78  Aligned_cols=257  Identities=8%  Similarity=-0.035  Sum_probs=133.7

Q ss_pred             chhhhHhhccCcchhHH---HHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCC-CCCC
Q 022198            3 AMNNILSKWVPVAERSR---SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP-AEDP   78 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~---a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p-~~~~   78 (301)
                      ++.++..|..+ |++..   ..+......++|.++|+.+++.+.+.+|||.+|++.+.+.++.... ....+|++ +..+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~  217 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERRAFVRP  217 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhcccccccccc
Confidence            45678888888 44433   3444444556899999999999999999999999987777654222 22344432 1111


Q ss_pred             CCCHHHHH--HHHhccC-CCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           79 QLRPAEKK--LIVSSCA-SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        79 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      +.++++..  ....... ++......+.++.+++|..+...+..++......+...-+-.+.++..|+|+.+.|......
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~  297 (468)
T TIGR00788       218 RIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVG  297 (468)
T ss_pred             cccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHH
Confidence            11110000  0000000 00000001234567888887754443331111111110000133457899999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH---hh-c------cCChHHHHHH-HHHHHhhhhh
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ---LS-H------VDSPAMAVLC-MACSQGTDAF  224 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~------~~~~~~~~~~-~~~~~~~~~~  224 (301)
                      .++..++..+.+++.+|++.|        +.+. +..+..++....   .. .      ..+....... ..-..+.+ +
T Consensus       298 ~v~~i~g~~~~~~~~~~~~~r--------~~l~-~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g-~  367 (468)
T TIGR00788       298 NLGSLCGVGGYDRFLKTFPYR--------LLFG-VTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ-L  367 (468)
T ss_pred             HHHHHHHHHHHHHHHhhCCHH--------HHHH-HHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH-H
Confidence            777777777766666555433        2221 222211111100   00 0      0111111111 11111111 1


Q ss_pred             hhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          225 SQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       225 ~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      ..........+. +++..|+..++.+...++|+.+++.+.|.+.++.|
T Consensus       368 ~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       368 KFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            112223333344 45688999999999999999999999999988755

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK03699 putative transporter; Provisional

Probab=99.23  E-value=1.5e-09  Score=99.36  Aligned_cols=168  Identities=13%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      -.+...+..++.......+...+|.+. +++|+|.++.++......++..++.++.|+++||++||+.        +. .
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~--------~~-~   77 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ--------LI-F   77 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HH-H
Confidence            344444444444444555667788754 6789999999999998999999999999999999997631        11 1


Q ss_pred             hhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          191 GFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      ..+..++........++....+.. ...+.+.+. ..+.......+..| +.|+.+.+..+....+++.++|.+.+.+.+
T Consensus        78 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (394)
T PRK03699         78 GFALMILAVAGLMFSHSLALFSIAMFVLGVVSGI-TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA  156 (394)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHh-hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111111111222333222221 111222211 11112223334444 578999888888888899999999998876


Q ss_pred             c-CcchHHHHHHHHHHHHHHHH
Q 022198          269 H-GSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       269 ~-~~~~~~f~~~~~~~~v~~~~  289 (301)
                      . .+|+..|.+.+++.++..+.
T Consensus       157 ~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        157 RSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             ccccHHHHHHHHHHHHHHHHHH
Confidence            4 68999998877666554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1e-09  Score=98.39  Aligned_cols=273  Identities=18%  Similarity=0.159  Sum_probs=163.4

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHH---HHhhhcCCchhHH-----------hhhhhHHHHHH-H---H
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP---FLIHRFGWPSVFY-----------SFGSLGTVWFT-V---W   66 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~---~l~~~~gWR~~F~-----------~~g~l~~~~~~-~---~   66 (301)
                      ++++.+..++++-+|..+.-....++|+.+.....-   ...+.-+|.-.++           +.+.++.+|.. +   .
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            467888999999999988877777888777655431   1122233433310           01222222211 1   1


Q ss_pred             hhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc
Q 022198           67 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT  146 (301)
Q Consensus        67 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~  146 (301)
                      +...+|.++.    +.++.+.....-  ++  -...++++.+++......+..+..+=+..+..+....|-.+++|+|..
T Consensus       217 ~~~v~~~~~~----~~~~~~~l~~g~--k~--L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         217 ILNVHDAEKI----SSPPPTALRNGF--KE--LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             Hhcccccccc----cccchHHHHHHH--HH--HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            1122222211    111111110000  00  012356777777777777777766668888889998999999999999


Q ss_pred             hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhh-h
Q 022198          147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF-S  225 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  225 (301)
                      |..++.....+.+.+|.+++|++.||++.|++.        ....++....++..+.........+.-+..+...+.. +
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl--------~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVL--------MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee--------hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            999999999999999999999999999876322        1111222222322221211121222212222222221 1


Q ss_pred             hcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhhc
Q 022198          226 QSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFS  294 (301)
Q Consensus       226 ~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~~  294 (301)
                      .+..+ ..+..+|++.+...|+.+..++..+.++|.+.+.+.+. ++.+.++....++.+++.+.+...+
T Consensus       361 ~SRSy-~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         361 SSRSY-LARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HHHHH-HHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence            12111 12334556789999999999999999999999999887 6677788878888888877765553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=9.3e-10  Score=101.54  Aligned_cols=168  Identities=13%  Similarity=0.040  Sum_probs=104.9

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+.+++...-......-.| .+++++|+|..+.++......++..++.+..|+++||+|||+        .+. ...+.
T Consensus        13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~--------~~~-~~~~~   82 (412)
T TIGR02332        13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR--------WIA-GIMVL   82 (412)
T ss_pred             HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH--------HHH-HHHHH
Confidence            33444443333444444455 788899999999999999999999999999999999999763        111 11211


Q ss_pred             HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc----
Q 022198          195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ----  268 (301)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~----  268 (301)
                      ..+........++....... ...+.+.+.. .+.......|..| ++|+.+.++.+....+|..+++.+.+++.+    
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            11111112223333322221 2222222222 1222233445544 689999999999999999999999998874    


Q ss_pred             --cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          269 --HGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       269 --~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                        ..||+..|.+.++..++.++.+..+
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhc
Confidence              2589999998766665544444343

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.23  E-value=8.1e-10  Score=101.06  Aligned_cols=162  Identities=11%  Similarity=-0.006  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  200 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~  200 (301)
                      +...........+|.+. +++|.|+.+.++......++..++.++.|+++||+|||+.        +. ......++...
T Consensus        19 ~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~--------~~-~~~~~~~~~~~   88 (394)
T PRK11652         19 VGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV--------IL-VGMSIFILGTL   88 (394)
T ss_pred             HHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH--------HH-HHHHHHHHHHH
Confidence            33333344445566555 6789999999999999999999999999999999987631        11 11111111111


Q ss_pred             HhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHH
Q 022198          201 QLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKV  278 (301)
Q Consensus       201 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~  278 (301)
                      .....++....+.. ...+.+.+... ........+.. +++++.+.+..+....++..++|.+.+.+.++.+|+..|.+
T Consensus        89 ~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         89 VALFAHSLTVLIAASAIQGLGTGVGG-VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             HHHHHccHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            11122233222211 11122211111 11111223333 35678888888888888999999999999988889999988


Q ss_pred             HHHHHHHHHHHHHhh
Q 022198          279 SVGLYLVGTAVWNLF  293 (301)
Q Consensus       279 ~~~~~~v~~~~~~~~  293 (301)
                      .++..++..+....+
T Consensus       168 ~~~~~~~~~~~~~~~  182 (394)
T PRK11652        168 LLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            766655544433333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.8e-09  Score=99.14  Aligned_cols=245  Identities=16%  Similarity=0.123  Sum_probs=148.0

Q ss_pred             hHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-------hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198            7 ILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP   78 (301)
Q Consensus         7 ~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~   78 (301)
                      +.++.. .+|||.+..++-+...++|..+...+.+.++.       ..||+..-.+.++++.+....-++..+|++.+..
T Consensus       136 l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~  215 (467)
T COG2211         136 LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQ  215 (467)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccc
Confidence            334444 68999999999999999997776555444432       4689998888888887654444444555443211


Q ss_pred             CCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198           79 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT  158 (301)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~  158 (301)
                      ..++           +.+...+.++..++|||++....+.+++...+.....+-+.-|.+...|.+..+..+.......+
T Consensus       216 ~~~~-----------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~  284 (467)
T COG2211         216 PTKT-----------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAG  284 (467)
T ss_pred             cCcc-----------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHH
Confidence            0000           00010111344688999998888777777666666677777788777777777777777666667


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhc
Q 022198          159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ..++.++.-++++|+|+|+.        .. .+.+..++.  ...+...++..+.+.. .....+.+ ...+-.++...|
T Consensus       285 ~l~~~~~~p~L~~~~gkk~~--------~~-~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d  354 (467)
T COG2211         285 LLIGLILWPRLVKKFGKKKL--------FL-IGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG-IANPLPWAMVAD  354 (467)
T ss_pred             HHHHHHhHHHHHHHhchHHH--------HH-HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh-ccccccHHHhcc
Confidence            77779999999999987621        11 111111111  1111122222222222 11122222 111223343332


Q ss_pred             c--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198          236 I--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW  272 (301)
Q Consensus       236 ~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~  272 (301)
                      .        ..|..|...+.+..+..+|.+++..+.|+.++..|+
T Consensus       355 ~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            2        123469999999999999999999999999886443

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=9e-10  Score=101.20  Aligned_cols=160  Identities=12%  Similarity=0.045  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      .....++..++...+.+....++|.+++ ++|+|.++.++......++..++.++.|+++||++||+.       .....
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-------l~~~~   85 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-------MMIGL   85 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-------HHHHH
Confidence            4445566666666676777789999885 679999999999999999999999999999999987631       11111


Q ss_pred             hhHHHH-HHHHHhhcc-CChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHH-hHHHhHhhh
Q 022198          191 GFLGPA-FFLTQLSHV-DSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAG-VFGTAATGY  265 (301)
Q Consensus       191 ~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg-~~~~~l~g~  265 (301)
                      ...... +........ .+....... ...+.+..... ........+ .++++|+.+.|+.+....+|. .++|.+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA-YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111 111111111 223222211 11122221111 111122223 356789999999999888886 578999999


Q ss_pred             hcccCcchHHHHHH
Q 022198          266 ILQHGSWDDVFKVS  279 (301)
Q Consensus       266 l~~~~~~~~~f~~~  279 (301)
                      +.++.|+...++..
T Consensus       165 l~~~~g~~~~~~~~  178 (402)
T TIGR00897       165 AIPAFGEMNTLWSA  178 (402)
T ss_pred             cccccchHHHHHHH
Confidence            99887765544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.20  E-value=9.1e-10  Score=99.90  Aligned_cols=159  Identities=17%  Similarity=0.100  Sum_probs=100.3

Q ss_pred             HHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198          124 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  203 (301)
Q Consensus       124 ~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      .+.......+|. +++++|.|..+.++......++..++.++.|+++||++||+        .+. .+....++......
T Consensus        19 ~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~--------~~~-~~~~~~~~~~~~~~   88 (385)
T TIGR00710        19 LGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP--------VLL-LGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH--------HHH-HHHHHHHHHHHHHH
Confidence            344444445555 55678999999999999999999999999999999998662        111 11111111111111


Q ss_pred             ccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198          204 HVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG  281 (301)
Q Consensus       204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~  281 (301)
                      ..++....... ...+.+.+.. .+...+...|.. +++|+.+.++.+....+++.++|.+.+++.++.+|+..|.+.++
T Consensus        89 ~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  167 (385)
T TIGR00710        89 LSNNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL  167 (385)
T ss_pred             HHccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            22233222221 1112211111 122223334544 46789999999999999999999999999998889999988777


Q ss_pred             HHHHHHHHHHhh
Q 022198          282 LYLVGTAVWNLF  293 (301)
Q Consensus       282 ~~~v~~~~~~~~  293 (301)
                      ..+++.+.....
T Consensus       168 ~~~~~~~~~~~~  179 (385)
T TIGR00710       168 AGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHh
Confidence            666665544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.20  E-value=7.4e-10  Score=99.40  Aligned_cols=166  Identities=13%  Similarity=0.019  Sum_probs=104.6

Q ss_pred             HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHH
Q 022198          117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGP  195 (301)
Q Consensus       117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~  195 (301)
                      ...++...+......-+|.|..+ .|.|..+.++......++..++.++.|+++||+|||+..       ...... ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-------~~~~~~~~~~   77 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-------IGADLIRAVL   77 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-------HHHHHHHHHH
Confidence            34444455555566677787764 699999999999999999999999999999999976321       111111 011


Q ss_pred             HHHHHHhhcc--CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          196 AFFLTQLSHV--DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       196 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      .+........  .+....... ...+.+.+ ...+...+...|..| ++|+.+.++.+....+|..++|.+.+++.++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  156 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG  156 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111111  122222211 11122221 112223344455554 689999999999999999999999999999888


Q ss_pred             chHHHHHHHHHHHHHHHHHH
Q 022198          272 WDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       272 ~~~~f~~~~~~~~v~~~~~~  291 (301)
                      |+..|.+.++..+++.+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       157 IKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998887666665544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.20  E-value=1.1e-09  Score=99.60  Aligned_cols=158  Identities=12%  Similarity=0.046  Sum_probs=99.4

Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +..+...+|. +++++|+|.++.++......+++.++.+..|+++||+|||.        .... .+.............
T Consensus         7 ~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~--------~~~~-~~~~~~~~~~~~~~~   76 (368)
T TIGR00903         7 WVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW--------FLFG-SLATFAAAAGRLLDP   76 (368)
T ss_pred             HHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHH-HHHHHHHHHHHHHHh
Confidence            3444455655 45688999999999999999999999999999999998652        1111 111111111001111


Q ss_pred             CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198          206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~  284 (301)
                      .+....+.+ ...+.+.+... ..........++++|+.+.++.+....+|+.+++.+.+++.++.||+..|.+.+++.+
T Consensus        77 ~~~~~l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            222222221 11222222111 1111122334567899999999999999999999999999998899999988777666


Q ss_pred             HHHHHHHhhc
Q 022198          285 VGTAVWNLFS  294 (301)
Q Consensus       285 v~~~~~~~~~  294 (301)
                      +..+.+....
T Consensus       156 ~~~~~~~~~l  165 (368)
T TIGR00903       156 AGIILVLAAL  165 (368)
T ss_pred             HHHHHHHHHc
Confidence            6555444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.20  E-value=1.5e-09  Score=98.96  Aligned_cols=166  Identities=8%  Similarity=0.034  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 022198          113 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF  192 (301)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~  192 (301)
                      ...++.+++..+..+......|. +++++|+|..+.++......++..++.++.|+++||+|||+        .+. ...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~--------~~~-~~~   84 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL--------PMV-TSI   84 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------HHH-HHH
Confidence            34455555555555556666665 56788999999999999999999999999999999999762        111 111


Q ss_pred             HHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198          193 LGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG  270 (301)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~  270 (301)
                      +..++........++....... ...+.+.+.. .+...+...|. ++++|+.+.++.+....+|..+++.+.+.+.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1111111111122233222211 1112222111 11122233344 4578999999999999999999999999988874


Q ss_pred             c--chHHHHHHHHHHHHHHHH
Q 022198          271 S--WDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       271 ~--~~~~f~~~~~~~~v~~~~  289 (301)
                      +  |+..|.+.+...+++.+.
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~  184 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWL  184 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHH
Confidence            4  998888765555554433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.19  E-value=1.1e-09  Score=100.97  Aligned_cols=143  Identities=10%  Similarity=0.038  Sum_probs=94.1

Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-H
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-M  215 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  215 (301)
                      +.+++|.|..+++.......++..++.++.|+++||+|||+.        +. .+.....+........++....+.. .
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~--------l~-~~~~~~~~~~~~~~~a~~~~~l~~~r~  112 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV--------LI-TGALIFTLACAATLFTTSMTQFLIARF  112 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH--------HH-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            567889999999999999999999999999999999997631        11 1111111111112223344333222 1


Q ss_pred             HHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          216 ACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ..+.+.+.. ....+....|..| ++++.+.++.+....++..++|.+.+.+.++.+|+..|.+.++..+++.+.
T Consensus       113 l~Gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        113 IQGTSICFI-ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            122222111 1112333445555 567888999999999999999999999988888999999887777766544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.19  E-value=6.6e-09  Score=96.90  Aligned_cols=283  Identities=16%  Similarity=0.088  Sum_probs=144.9

Q ss_pred             CchhhhHhhccCcchh--HHHHHHHHhhhhhhHHHHhhhHHHH--hhhc-------------CCchhHHhhhhhHHHHHH
Q 022198            2 PAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFL--IHRF-------------GWPSVFYSFGSLGTVWFT   64 (301)
Q Consensus         2 p~~~~~i~~~~p~~~r--g~a~~~~~~g~~lG~~~g~~l~~~l--~~~~-------------gWR~~F~~~g~l~~~~~~   64 (301)
                      ++..++++|.+|+++|  +++.++.+....+|.++|+.+++..  .+.+             +=|..|++.+++-++...
T Consensus       133 ~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l  212 (477)
T TIGR01301       133 GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTY  212 (477)
T ss_pred             HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence            3456889999998866  6899999999999999999998865  2322             447889885554444333


Q ss_pred             HHhhhccCCCCCCCCCC-HHHHHHHHhccCCCCCCCCCChHHhh----cC-hhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 022198           65 VWLSKAHSSPAEDPQLR-PAEKKLIVSSCASKEPVKTIPWGLIL----SK-PPVWALIVSHFCHNWGTFILLTWMPTYYN  138 (301)
Q Consensus        65 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll----~~-~~~~~~~~~~~~~~~~~~~~~~wlp~~l~  138 (301)
                      +.....+|+|..+++-. ++|.    ++  .++...+..+++++    +- |.+|.+.+..++.=.+++.+..|...|..
T Consensus       213 ~t~~~v~E~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg  286 (477)
T TIGR01301       213 IALSAVKENPLIGSDDFINSEA----AP--PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMG  286 (477)
T ss_pred             HHeeeeeccCCCccccchhhhc----cc--ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33444566543211100 0110    00  00000011233333    33 46777888888776788888888888877


Q ss_pred             H-HhCCCcchh---------hhHh-hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH-hhccC
Q 022198          139 Q-VLHFNLTES---------GLFC-VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ-LSHVD  206 (301)
Q Consensus       139 ~-~~g~s~~~~---------~~~~-~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  206 (301)
                      + .++-++.+.         |.+. ....+...+.+++--++.+|+|+|+      +.+.....+...++.... .....
T Consensus       287 ~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~  360 (477)
T TIGR01301       287 REVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK------RLWGIVNIILAICLAATVLVTYVA  360 (477)
T ss_pred             HHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4 455443222         2221 1112222233333344455554221      111111111111111111 11100


Q ss_pred             ---------------C---hHHHHH-HHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhHHHhHhh
Q 022198          207 ---------------S---PAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATG  264 (301)
Q Consensus       207 ---------------~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~~~~l~g  264 (301)
                                     +   ....+. +...+..... ..+.-|+...+..+   +..|.-.|+.|....+...+.....|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g  439 (477)
T TIGR01301       361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG  439 (477)
T ss_pred             hccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence                           0   111221 1112222111 12223443333333   45699999999998888888887777


Q ss_pred             hhccc--CcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198          265 YILQH--GSWDDVFKVSVGLYLVGTAVWNLFSTGE  297 (301)
Q Consensus       265 ~l~~~--~~~~~~f~~~~~~~~v~~~~~~~~~~~~  297 (301)
                      .+.+.  ++-...+.+.++..+++++.....-.+.
T Consensus       440 ~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       440 PWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             HHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            74443  2345677777777777766555544443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.19  E-value=1.3e-09  Score=99.64  Aligned_cols=156  Identities=15%  Similarity=0.049  Sum_probs=99.6

Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      .+.....+|. +++++|.|.++.++......++..++.+..|+++||+|||+        .+. ......++........
T Consensus        25 ~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--------~~~-~~~~~~~~~~~~~~~~   94 (390)
T PRK03545         25 EFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK--------LLI-GLFVLFIASHVLSALA   94 (390)
T ss_pred             HHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--------HHH-HHHHHHHHHHHHHHHh
Confidence            3333344565 56689999999999999888999999999999999999762        111 1111111111112223


Q ss_pred             CChHHHHHHH-HHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198          206 DSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY  283 (301)
Q Consensus       206 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~  283 (301)
                      ++.......- ..+.+.+.+ .+...+...+. ++++|+.+.|+.+....++..++|.+.+.+.++.||+..|.+.+++.
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~  173 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIF-WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA  173 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence            3433332221 112211111 11122233344 45689999999999999999999999999998889999999887777


Q ss_pred             HHHHHHHHh
Q 022198          284 LVGTAVWNL  292 (301)
Q Consensus       284 ~v~~~~~~~  292 (301)
                      ++..+....
T Consensus       174 ~l~~~~~~~  182 (390)
T PRK03545        174 LITLLLLIK  182 (390)
T ss_pred             HHHHHHHHH
Confidence            666544333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=1.6e-09  Score=98.82  Aligned_cols=169  Identities=12%  Similarity=0.053  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      +..+...+..++.....+.....+|.+ ++++|+|.++.++......++..++.++.|+++||++||+        .+. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~--------~~~-   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH--------ILL-   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH--------HHH-
Confidence            345555566666666666777778775 5678999999999999999999999999999999998763        111 


Q ss_pred             HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .+....++........++....... ...+.+.+... +.......+..+ ++++.+.+.......++..++|.+.+++.
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            1222222222222233344332222 11222222111 111122334444 56788888888888899999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHHH
Q 022198          268 QHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       268 ~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      +..+|+..|.+.++..++..+.
T Consensus       152 ~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        152 QEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             hhccHHHHHHHHHHHHHHHHHH
Confidence            8888999998877666655443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.16  E-value=2.1e-08  Score=95.34  Aligned_cols=251  Identities=12%  Similarity=0.060  Sum_probs=132.1

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC---C
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP---Q   79 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~---~   79 (301)
                      .+..+++|++++|+|+.++.+ ......++..+++.++++.+  +||+.+++..+++.+..++ ....+|+|+...   +
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            456788999999999999999 77778888888988888888  8999999988887665333 233458886321   1


Q ss_pred             CCHHHHHHHH--h----------------ccCCCC---CCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 022198           80 LRPAEKKLIV--S----------------SCASKE---PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  138 (301)
Q Consensus        80 ~~~~~~~~~~--~----------------~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~  138 (301)
                      .++.++....  +                ...+++   ..++..+.++++.|++....+.... .+-.+....+.-.+..
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~y~gl~~~~  345 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF-IWFVFSLVYYGLSLNV  345 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH-HHHHHhHHHHhhhhhh
Confidence            1111110000  0                000000   0011335667888765443322222 2222333344333344


Q ss_pred             HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHH
Q 022198          139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMAC  217 (301)
Q Consensus       139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  217 (301)
                      +..|-+..-....   ....-.......+...||.|||..       ......+...+........ .............
T Consensus       346 ~~lg~~~~~~~~~---~~~~~~p~~~~~~~~~~~~gR~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (521)
T KOG0255|consen  346 SGLGGNIYLNFTL---SGLVELPAYFRNGLLLPEFGRRPP-------LFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLL  415 (521)
T ss_pred             hhcCchHHHHHHH---HHHHHhhHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            4444444322222   222444555666788898865521       1111111111111111111 1111011111111


Q ss_pred             HHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          218 SQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      +.+....+....+....|..|. .|..+.+..+..++++++++|.+.-....
T Consensus       416 ~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  416 GKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111112222234455677775 79999999999999999999988744433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.16  E-value=1.3e-08  Score=93.33  Aligned_cols=180  Identities=14%  Similarity=0.144  Sum_probs=99.7

Q ss_pred             HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Q 022198          104 GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTV  183 (301)
Q Consensus       104 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~  183 (301)
                      .+++|+|++....+..++.....-...++.+.|+++.-|.+....+....+..++=++.....+++..|++.|       
T Consensus       201 ~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-------  273 (400)
T PF03825_consen  201 LKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-------  273 (400)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------
Confidence            4699999998877777766666777889999999876447777777655543333334444445555554432       


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcc-CChHHHHHHHHH-----HHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHH-hhH
Q 022198          184 RKIMQSIGFLGPAFFLTQLSHV-DSPAMAVLCMAC-----SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAG-VLA  255 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~-~lg  255 (301)
                       + +..++.+..++=....... ++..........     +..++.+-.. ...+..+. +++.++++.++.+... .+|
T Consensus       274 -~-ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg  350 (400)
T PF03825_consen  274 -W-LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLG  350 (400)
T ss_pred             -H-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence             2 2222222222211112222 222222211111     2222222111 12233344 4568899999877654 589


Q ss_pred             HhHHHhHhhhhcccCcc------hHHHHHHHHHHHHHHHHHHhh
Q 022198          256 GVFGTAATGYILQHGSW------DDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       256 g~~~~~l~g~l~~~~~~------~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.+|..+.|++.|+.|.      ...+.+.+++.++..+.+.++
T Consensus       351 ~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  351 GAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998543      345555555555555444444

>TIGR00895 2A0115 benzoate transport

Probab=99.16  E-value=1.9e-09  Score=97.93  Aligned_cols=153  Identities=17%  Similarity=0.174  Sum_probs=96.1

Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      .+......|. +.+++|+|..+.+++.....++..++.++.|+++||++||+.        +. .+.....+........
T Consensus        33 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--------~~-~~~~~~~~~~~~~~~~  102 (398)
T TIGR00895        33 LAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV--------LL-WSILLFSVFTLLCALA  102 (398)
T ss_pred             HHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH--------HH-HHHHHHHHHHHHHHHc
Confidence            3344455555 456789999999999998899999999999999999987621        11 1111111111111222


Q ss_pred             CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198          206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY  283 (301)
Q Consensus       206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~  283 (301)
                      .+....+.. ...+.+.+ ...+...+...|..| ++|+.+.++.+....+|+.++|.+.+++.++.+|+..|.+.++..
T Consensus       103 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  181 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP  181 (398)
T ss_pred             cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence            233222221 11122211 111223334445555 678999999999999999999999999999888998888765444


Q ss_pred             HHHHHH
Q 022198          284 LVGTAV  289 (301)
Q Consensus       284 ~v~~~~  289 (301)
                      ++..+.
T Consensus       182 ~~~~~~  187 (398)
T TIGR00895       182 LLLLLL  187 (398)
T ss_pred             HHHHHH
Confidence            444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.16  E-value=3.7e-09  Score=96.63  Aligned_cols=170  Identities=14%  Similarity=0.053  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      |.........+....+.......+|.+. +++|.|..+.+.......++..++.++.|+++||+|||+        .+. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~--------~l~-   72 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP--------VAI-   72 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH--------HHH-
Confidence            3444444445555555556666777765 568999999999998888999999999999999998762        111 


Q ss_pred             HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .+.+..++........++....+.. ...+.+.+.. .........+. ++++|+.+.+..+....+++.++|.+.+.+.
T Consensus        73 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         73 PGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111222233222211 1112221111 11122333444 4578999999999999999999999999988


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHH
Q 022198          268 QHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       268 ~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +..+|+..|.+.+.+.+++.+..
T Consensus       152 ~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        152 LKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             hCcChHHHHHHHHHHHHHHHHHH
Confidence            88889999888776666655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=9.4e-10  Score=102.26  Aligned_cols=174  Identities=10%  Similarity=-0.011  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      .++...+.+.+.....+.+..++| ++++ +|+|+++.++......++..++.++.|+++||+++|+.....      .+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~------~~   99 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG------LI   99 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHH------HH
Confidence            333333433333333444566676 4555 599999999999999999999999999999999876432111      01


Q ss_pred             hhHHHHHHHHHhhc-cCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          191 GFLGPAFFLTQLSH-VDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       191 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      ......+....... ..+...... ....+.+.+.. .+.......+.. +++|+.+.++.+...++++.++|.+.+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~  178 (438)
T TIGR00712       100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM  178 (438)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            11111111110111 111111111 11112111111 111122223444 578999999999999999999998888765


Q ss_pred             c-cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          268 Q-HGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       268 ~-~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      + +.+|+..|.+.+++.++..+....+
T Consensus       179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       179 AWFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5 4689999998777776655444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.15  E-value=8.2e-10  Score=99.49  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      .|....+.|. +++++|+|..+.++......++..++.+..|+++||+|||+....         .....++........
T Consensus        19 ~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~---------~~~~~~~~~~~~~~~   88 (377)
T TIGR00890        19 VYTWTLLAPP-LGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML---------GGILYGLGFTFYAIA   88 (377)
T ss_pred             HhhhhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH---------hHHHHHHHHHHHHHH
Confidence            4455556654 666889999999999999999999999999999999998743211         111111111111112


Q ss_pred             CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198          206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~  284 (301)
                      ++....... ...+.+.+.. .........+..|++|+.+.++.+....+|..+++.+.+.+.+..+|+..|.+.+++.+
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  167 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIA-YGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL  167 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHH-HHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            222222211 1122222211 11122233344577899999998888888888877778888787889999988777766


Q ss_pred             HHHHHHHh
Q 022198          285 VGTAVWNL  292 (301)
Q Consensus       285 v~~~~~~~  292 (301)
                      +..+....
T Consensus       168 ~~~~~~~~  175 (377)
T TIGR00890       168 LVIVLGAF  175 (377)
T ss_pred             HHHHHHHH
Confidence            65544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.15  E-value=5.9e-09  Score=98.52  Aligned_cols=167  Identities=17%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+..++...-.-.+.+-+|++. +++|.|..+.++......++...+.+..|+++||+|||+.        +. .+...
T Consensus        11 ~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~--------l~-~~~~~   80 (495)
T PRK14995         11 IVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL--------LM-LGGTL   80 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------HH-HHHHH
Confidence            34444444444445666688875 5789999999999998999999999999999999987631        11 11111


Q ss_pred             HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhh-hhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYS-NHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      .++........++....+.. ...+.+.+.. .+.... ...+. ++++|+.+.|+......+|..++|.+.|++.++.+
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            11111112233344333322 1122222211 111122 22333 34689999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHh
Q 022198          272 WDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       272 ~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      |++.|++...+.+++.+....
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999998876666655444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.14  E-value=4.9e-09  Score=96.15  Aligned_cols=154  Identities=12%  Similarity=0.060  Sum_probs=98.0

Q ss_pred             HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198          126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  205 (301)
Q Consensus       126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      .|.....+|.+ .+++|+|+++.++......++..++.++.|+++||+|||+        .+. ...+..++........
T Consensus        36 ~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~--------~~~-~~~~~~~~~~~~~~~~  105 (394)
T PRK10213         36 EFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY--------VVI-LFAVLLTLSCLLVSFA  105 (394)
T ss_pred             HHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH--------HHH-HHHHHHHHHHHHHHHH
Confidence            33444456664 4678999999999988889999999999999999998762        111 1111111111111222


Q ss_pred             CChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198          206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY  283 (301)
Q Consensus       206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~  283 (301)
                      ++......+ ...+.+.+.. .+...+...|.. +++++.+.++.....+++..++|.+.+++.++.+|+..|.+.+++.
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~  184 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG  184 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            233222222 1222222211 111222334444 4678999999999999999999999999999889999998877666


Q ss_pred             HHHHHHH
Q 022198          284 LVGTAVW  290 (301)
Q Consensus       284 ~v~~~~~  290 (301)
                      +++.+..
T Consensus       185 ~~~~l~~  191 (394)
T PRK10213        185 VLCIFWI  191 (394)
T ss_pred             HHHHHHH
Confidence            6554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.14  E-value=3.2e-09  Score=99.57  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=103.2

Q ss_pred             HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198          117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA  196 (301)
Q Consensus       117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~  196 (301)
                      +..+............+|.+. +++|.|..+.++......++..++.++.|+++||+|||+.        +. .+.+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~   78 (485)
T TIGR00711         9 LGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL--------FL-ISTFAFT   78 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH--------HH-HHHHHHH
Confidence            334444444444556677655 5789999999999999999999999999999999987621        11 1111122


Q ss_pred             HHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198          197 FFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD  274 (301)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~  274 (301)
                      +........++....+.. ...+.+.+.. .+.......|.. +++|+.+.++.+....+|..++|.+.|++.++.+|+.
T Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~  157 (485)
T TIGR00711        79 LGSLLCGVAPNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW  157 (485)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence            121112223333332222 1112222211 122233344554 4789999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHH
Q 022198          275 VFKVSVGLYLVGTAV  289 (301)
Q Consensus       275 ~f~~~~~~~~v~~~~  289 (301)
                      .|.+.+.+.+++.+.
T Consensus       158 ~f~~~~~~~~~~~~~  172 (485)
T TIGR00711       158 IFLINVPIGIIVVVV  172 (485)
T ss_pred             hhhhhhHHHHHHHHH
Confidence            998876655555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.13  E-value=9.8e-09  Score=93.36  Aligned_cols=245  Identities=11%  Similarity=0.093  Sum_probs=128.5

Q ss_pred             HHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCh
Q 022198           24 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW  103 (301)
Q Consensus        24 ~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
                      .-..+++|-+++..++|.+.+. +=+..|++....+++..++.+...++++++.+ ..+++.       .++++.+..+.
T Consensus       143 ~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~  213 (412)
T PF01306_consen  143 ARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAE-VADALG-------AKKDKVSLKDV  213 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS--SSTTSS-------S------HHHH
T ss_pred             HHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhh-hhcccc-------cCCCCCcHHHH
Confidence            3445577777788888877663 22577886444444433232222233332211 111100       00111111134


Q ss_pred             HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcH
Q 022198          104 GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV  180 (301)
Q Consensus       104 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~  180 (301)
                      .+++|+|++|...+........++.+-.-.|.|.++..   +.+..-.|+......+.=++...+..++.+|+|.|    
T Consensus       214 ~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k----  289 (412)
T PF01306_consen  214 LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK----  289 (412)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH----
Confidence            57899999999776665554455656555777776422   33334456665655556666777777888888765    


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhcc-CCCchHHHHHHH-hHHHhhHHh
Q 022198          181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLS-NTAGVLAGV  257 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~-~~~~~lgg~  257 (301)
                          +.+...+.+... =....+..+++..+...-.. +.-+. ......+.+..+. ++|..++...+. +...+++..
T Consensus       290 ----~~Lllag~i~~i-Ri~~~~~~~~~~~i~~~klLH~~e~~-l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~  363 (412)
T PF01306_consen  290 ----NLLLLAGVIMAI-RIIGSGFATNPWVISLIKLLHALEFP-LLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII  363 (412)
T ss_dssp             ----HHHHHHHHHHHH-HHHHHHT--SHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred             ----hHHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence                222222222111 11222344556443332111 11111 1111222333333 456777777774 677788999


Q ss_pred             HHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198          258 FGTAATGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       258 ~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      +.+.+.|.+-|+.|++..|.+++.+.+...
T Consensus       364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~  393 (412)
T PF01306_consen  364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFT  393 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence            999999999999889988888776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=4.3e-09  Score=96.74  Aligned_cols=150  Identities=13%  Similarity=-0.003  Sum_probs=92.9

Q ss_pred             HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198          130 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA  209 (301)
Q Consensus       130 ~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (301)
                      ..-+|. +++++|.|..+.+.......++..++.++.|+++||++||+.        +. ......++........++..
T Consensus        33 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~--------l~-~~~~~~~~~~~~~~~~~~~~  102 (406)
T PRK15402         33 QPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV--------ML-AGVAFFILTCLAILLAQSIE  102 (406)
T ss_pred             hcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--------HH-HHHHHHHHHHHHHHHHccHH
Confidence            334554 446889999999999888999999999999999999987631        11 11111111111111222332


Q ss_pred             HHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198          210 MAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       210 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      ..+.. ...+.+.+.. .+.......|.. ++.++.+.++.+....++..++|.+.+++.++.+|+..|.+.+++.+++.
T Consensus       103 ~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~  181 (406)
T PRK15402        103 QFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF  181 (406)
T ss_pred             HHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            22221 1112111111 111223333443 45677777888888888899999999999998889999988777777665


Q ss_pred             HHH
Q 022198          288 AVW  290 (301)
Q Consensus       288 ~~~  290 (301)
                      +..
T Consensus       182 ~~~  184 (406)
T PRK15402        182 FGL  184 (406)
T ss_pred             HHH
Confidence            543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.11  E-value=8.4e-09  Score=94.84  Aligned_cols=169  Identities=12%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhh--hhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF--GSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~--g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      +..+++++|+|++||+++.|+..++..+|.+++++++++ ...+|||+-+.+.  ..-+...+.++-.++| .|++.--.
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP-~~~~sl~f  211 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLK-RPKRSLFF  211 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC-CCchhhhh
Confidence            467899999999999999999999999999999999999 5678999987653  2222222223333444 33321000


Q ss_pred             CHHH----H--HHHHhc-cCCC--C---CC-CC--------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 022198           81 RPAE----K--KLIVSS-CASK--E---PV-KT--------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ  139 (301)
Q Consensus        81 ~~~~----~--~~~~~~-~~~~--~---~~-~~--------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~  139 (301)
                      ++.+    .  ...... +.++  .   ++ +.        .++++..+||....-.+-..+...+++-+.+|.-.+..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~  291 (511)
T TIGR00806       212 NRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGT  291 (511)
T ss_pred             ccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            0000    0  000000 0000  0   00 00        123344566654332222233455777788888777765


Q ss_pred             HhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198          140 VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL  173 (301)
Q Consensus       140 ~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~  173 (301)
                      ..+-...-=|..-++..+.+.+..+..|++-.++
T Consensus       292 v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       292 LDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            4221111223334444556777888888876554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.11  E-value=5.1e-10  Score=100.89  Aligned_cols=163  Identities=13%  Similarity=0.009  Sum_probs=100.7

Q ss_pred             HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198          120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL  199 (301)
Q Consensus       120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      ++.......+...+| ++++++|+|..+.+++.....++..++.++.|+++||++||+....         +....++..
T Consensus         5 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~---------~~~~~~~~~   74 (379)
T TIGR00881         5 AAYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI---------GLILCAIVN   74 (379)
T ss_pred             hHHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH---------HHHHHHHHH
Confidence            333444555666666 5667899999999999999999999999999999999998743211         111111111


Q ss_pred             HHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHH-hHhhhhcccCcchHHH
Q 022198          200 TQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT-AATGYILQHGSWDDVF  276 (301)
Q Consensus       200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~-~l~g~l~~~~~~~~~f  276 (301)
                      .......+....+.. ...+.+.+ ...+...+...+..| ++|+.+.++.+....+|+.++| .+.+.+.++.+|+..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  153 (379)
T TIGR00881        75 LFFGFSTSLWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF  153 (379)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence            111122233222222 11122211 112223334445544 5789999999999999999999 4666666777899988


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 022198          277 KVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       277 ~~~~~~~~v~~~~~~~~  293 (301)
                      .+.+.+.++..+....+
T Consensus       154 ~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       154 IVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHHHHHHHHHHHhee
Confidence            87776665544444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.11  E-value=1e-08  Score=93.43  Aligned_cols=149  Identities=15%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      +.++...+..++...........+|.|++ ++|.|.+++|+......++..++.++.|+++||+|||+.        +. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~--------~~-   75 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS--------YY-   75 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HH-
Confidence            45666677777766677778899999887 569999999999999999999999999999999997621        11 


Q ss_pred             HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhh-hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .+....++........++....+.+ ...+.+.+... +.... ...+..+++|+.+.+..+...++|..++|.+.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         76 LASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1111111111111222333332222 12222222111 11111 222344568899999999999999999999999987


Q ss_pred             cc
Q 022198          268 QH  269 (301)
Q Consensus       268 ~~  269 (301)
                      +.
T Consensus       155 ~~  156 (381)
T PRK03633        155 TE  156 (381)
T ss_pred             cc
Confidence            76

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.09  E-value=9.2e-09  Score=94.37  Aligned_cols=161  Identities=14%  Similarity=0.141  Sum_probs=100.5

Q ss_pred             HHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH
Q 022198          118 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF  197 (301)
Q Consensus       118 ~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~  197 (301)
                      ..++.....+....-.|.+. +++|+|+.+.++......++..++.++.|+++||+|||+...         .......+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~~~~~   92 (406)
T PRK11551         23 VALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI---------VSVALFGL   92 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHHHHHH
Confidence            33333334444555666655 568999999999999999999999999999999999773211         11111111


Q ss_pred             HHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198          198 FLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV  275 (301)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~  275 (301)
                      .........+....+.. ...+.+.+. ..+...+...|.. +++|+.+.++.+....+|+.+++.+.+.+.+..+|+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  171 (406)
T PRK11551         93 FSLATAQAWDFPSLLVARLLTGVGLGG-ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI  171 (406)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence            11111122333222221 112222221 1122233344554 47899999999999999999999998888888889998


Q ss_pred             HHHHHHHHHHHHHH
Q 022198          276 FKVSVGLYLVGTAV  289 (301)
Q Consensus       276 f~~~~~~~~v~~~~  289 (301)
                      |.+.+++.++..+.
T Consensus       172 ~~~~~~~~~~~~~~  185 (406)
T PRK11551        172 FYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88876655554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.09  E-value=7e-09  Score=95.08  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=97.8

Q ss_pred             HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198          127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD  206 (301)
Q Consensus       127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +.....+|. +++++|+|.++.++......++..++.++.|+++||+|||+.         ...+....++........+
T Consensus        26 ~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~---------l~~~~~l~~~~~~~~~~a~   95 (393)
T PRK09705         26 TSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS---------VAISLLLIAVGALMRELYP   95 (393)
T ss_pred             hccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH---------HHHHHHHHHHHHHHHHHCc
Confidence            445566776 556889999999999999999999999999999999998732         1122222222222222333


Q ss_pred             ChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198          207 SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL  284 (301)
Q Consensus       207 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~  284 (301)
                      +....+. -...+.+.+... ........+..|++|+.+.+..+....+|+.+++.+.+++.++ .+|+..+.+.+...+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~  174 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV  174 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHh-hhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3332222 122222222111 1112233445567889999998888889999999999999888 489887766555444


Q ss_pred             HHHHHH
Q 022198          285 VGTAVW  290 (301)
Q Consensus       285 v~~~~~  290 (301)
                      +....+
T Consensus       175 ~~~~~~  180 (393)
T PRK09705        175 VALFAW  180 (393)
T ss_pred             HHHHHH
Confidence            443333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.09  E-value=3.7e-09  Score=96.50  Aligned_cols=161  Identities=10%  Similarity=-0.000  Sum_probs=98.8

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+.+++...++.....++|.|++ ++|+|..+.++......+...++.++.|.++||++|+.    ..++.+.. ....
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~-~~~l   82 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII----IALRLLAL-ASAI   82 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHH-HHHH
Confidence            444455544455556788999996 57999999999999999999999999999999987531    11222211 1111


Q ss_pred             HHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198          195 PAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  273 (301)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~  273 (301)
                      ..+...  ...++....+.... .+.+... ..+...+...+ .+++++.+.|.....+.+|..++|.+.|++.++.||+
T Consensus        83 ~~~~~~--~~~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~  158 (382)
T TIGR00902        83 FAAAFS--AGAHNAWLLFIAIGLFALFFSA-GMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ  158 (382)
T ss_pred             HHHHHH--HhhhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            111111  12223322222211 1111111 11111122222 2456677888889999999999999999999998999


Q ss_pred             HHHHHHHHHHHH
Q 022198          274 DVFKVSVGLYLV  285 (301)
Q Consensus       274 ~~f~~~~~~~~v  285 (301)
                      ..|.+.....++
T Consensus       159 ~~f~~~~~~~~~  170 (382)
T TIGR00902       159 NILAILTAGLAF  170 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            988876554333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.09  E-value=2.8e-09  Score=96.36  Aligned_cols=153  Identities=17%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      +....| ++++++|+|..+.+++.....++..++.++.|+++||+|||+.....         .+..++.........+.
T Consensus        13 ~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~---------~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893        13 LSFAAP-MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVF---------IVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             hhHhHH-HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHH---------HHHHHHHHHHHHHHcCH
Confidence            334444 47778999999999999999999999999999999999977532211         11111111111112233


Q ss_pred             HHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198          209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  286 (301)
Q Consensus       209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~  286 (301)
                      ...... ...+.+.+.. .+.......|..| ++|+.+.++.+....+|+.++|.+.+.+.++.+|+..|.+.++..++.
T Consensus        83 ~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            222222 2222222211 1222334445555 689999999999999999999999999999888999998877766665


Q ss_pred             HHHHHh
Q 022198          287 TAVWNL  292 (301)
Q Consensus       287 ~~~~~~  292 (301)
                      .+....
T Consensus       162 ~~~~~~  167 (399)
T TIGR00893       162 GVLWLK  167 (399)
T ss_pred             HHHhhh
Confidence            544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.09  E-value=3.8e-09  Score=94.02  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=107.8

Q ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH
Q 022198          116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP  195 (301)
Q Consensus       116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~  195 (301)
                      .+..++.....+......|.+.+ ++|.|..+.+.......++..++.++.|+++||++||+...         .+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~---------~~~~~~   74 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLL---------LGLLLF   74 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhH---------HHHHHH
Confidence            34455556667777888888886 46999999999999999999999999999999998774211         111111


Q ss_pred             HHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198          196 AFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  273 (301)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~  273 (301)
                      .+........++........ ..+.+.+ ...+...+...|..| ++|+...++.+....+|+.++|.+.+.+.++.+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (352)
T cd06174          75 ALGSLLLAFASSLWLLLVGRFLLGLGGG-ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR  153 (352)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHcccc-cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            11111111222332222221 1111111 111222333445544 58999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022198          274 DVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       274 ~~f~~~~~~~~v~~~~~  290 (301)
                      ..+.+.+...+++.+..
T Consensus       154 ~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         154 WLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888777766665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PTZ00207 hypothetical protein; Provisional

Probab=99.08  E-value=2.9e-08  Score=94.65  Aligned_cols=288  Identities=14%  Similarity=0.071  Sum_probs=152.4

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCC--C---
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA--E---   76 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~--~---   76 (301)
                      +++...+.+||| ++||+++|+..++..+|+++..++...+.. .+|++.|++.+++++++.++++...++.|.  .   
T Consensus       139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~  216 (591)
T PTZ00207        139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQ  216 (591)
T ss_pred             HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccc
Confidence            356678899997 689999999999999999765544444433 469999999899887766555554443331  1   


Q ss_pred             CCCCCHHHHH-----------------H--------------------------------------HH------h-----
Q 022198           77 DPQLRPAEKK-----------------L--------------------------------------IV------S-----   90 (301)
Q Consensus        77 ~~~~~~~~~~-----------------~--------------------------------------~~------~-----   90 (301)
                      ....+++|+.                 .                                      ..      .     
T Consensus       217 ~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip  296 (591)
T PTZ00207        217 EKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFP  296 (591)
T ss_pred             ccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111233222                 0                                      00      0     


Q ss_pred             ---------c-c-C---------------C-----------CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhH
Q 022198           91 ---------S-C-A---------------S-----------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  133 (301)
Q Consensus        91 ---------~-~-~---------------~-----------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl  133 (301)
                               + + +               +           ..|.....+.+.+++..+|..+..++|.......+.+-+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~  376 (591)
T PTZ00207        297 LTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA  376 (591)
T ss_pred             HHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence                     0 0 0               0           001101145667788889999988888755555555556


Q ss_pred             HHHHHHHh-CCCcch--hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH
Q 022198          134 PTYYNQVL-HFNLTE--SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM  210 (301)
Q Consensus       134 p~~l~~~~-g~s~~~--~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (301)
                      -...+ .+ |.+.++  ..++.++..++..+|.+..|+++...-+|......-|.....+..++....+..+.......+
T Consensus       377 ~qI~~-sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYT-ALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHH-HhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence            55554 55 774443  343678889999999999999984333332000001222222222222111111111221223


Q ss_pred             HHHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHH-HhHhhhhcccC----c---------chHHH
Q 022198          211 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG-TAATGYILQHG----S---------WDDVF  276 (301)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~-~~l~g~l~~~~----~---------~~~~f  276 (301)
                      .+.....+++.+... +.......|+..++-|.-..+.....-+|..+- -.+.|.+.|+.    +         +...|
T Consensus       456 ~~~~~lvg~~~G~~~-~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        456 PLPYFIAAFANGFMA-ATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHHhhHhH-HHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            333333333332211 112233345555555543333333333333332 34556666651    1         55678


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 022198          277 KVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       277 ~~~~~~~~v~~~~~~~~  293 (301)
                      .+++++..++++.-..+
T Consensus       535 ~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHHHHHHHHHhhe
Confidence            88877777776554333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.06  E-value=5.7e-09  Score=95.23  Aligned_cols=160  Identities=11%  Similarity=-0.019  Sum_probs=96.4

Q ss_pred             HHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH
Q 022198          119 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF  198 (301)
Q Consensus       119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~  198 (301)
                      +++...+...+..++|.|+++ +|.|.++.|.......+...++.++.|+++||++||.   .. ++.+...... ....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~---~~-~~~~~~~~~~-~~~~   86 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLI---PA-LRLLALLTLL-FAVA   86 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchH---HH-HHHHHHHHHH-HHHH
Confidence            344444556677889999965 6999999999999999999999999999999998641   11 1222211111 1111


Q ss_pred             HHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198          199 LTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK  277 (301)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~  277 (301)
                      .  ....++......... .+.+.+ ...+...+...+. .++++.+.+..+..+.+|..++|.+.|++.|+.||+..|+
T Consensus        87 ~--~~~~~~~~~l~i~~~l~g~~~~-~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~  162 (382)
T PRK11128         87 F--WFGAHSFWLLFVAIGLFNLFFS-PLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW  162 (382)
T ss_pred             H--HHhcccHHHHHHHHHHHHHHHc-ccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            1  111223322221111 111111 1112111222222 3345555666777778999999999999999989999998


Q ss_pred             HHHHHHHHHHH
Q 022198          278 VSVGLYLVGTA  288 (301)
Q Consensus       278 ~~~~~~~v~~~  288 (301)
                      +.++..++..+
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK11128        163 ILTAGVASMLL  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            77655544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.06  E-value=1.3e-08  Score=93.98  Aligned_cols=157  Identities=11%  Similarity=0.081  Sum_probs=96.3

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  193 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~  193 (301)
                      ..++..+......+.....+| ++++++|.|..+.++......++..++.++.|+++||+|||..        +. .+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~--------l~-~~~~   91 (426)
T PRK12307         22 SAWLGYVFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL--------MM-WSIV   91 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--------HH-HHHH
Confidence            334444444444444444454 4667889999999999999999999999999999999987621        11 1111


Q ss_pred             HHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          194 GPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      ..++........++......+ ...+.+.+... +.......|. ++++|+.+.++.+....+|..+++.+.+.+.++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            111111111122222222221 12222222111 1112223344 44678999999999889999999999999988889


Q ss_pred             chHHHHHHHH
Q 022198          272 WDDVFKVSVG  281 (301)
Q Consensus       272 ~~~~f~~~~~  281 (301)
                      |+..|.+...
T Consensus       171 w~~~f~i~~~  180 (426)
T PRK12307        171 WRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHHH
Confidence            9999877543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.06  E-value=8.6e-09  Score=96.37  Aligned_cols=153  Identities=11%  Similarity=0.066  Sum_probs=98.1

Q ss_pred             HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198          127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD  206 (301)
Q Consensus       127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +.+..++|.+. +++|.|.++.++......+...++.++.|+++||++||+.        +. ...+...+........+
T Consensus        36 ~~~~~~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~--------l~-~~~~~~~~~~~~~~~~~  105 (455)
T TIGR00892        36 KAVTVFFKELQ-QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV--------VI-AGGLLASLGMILASFSS  105 (455)
T ss_pred             cchhhhHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH--------HH-hhHHHHHHHHHHHHHhh
Confidence            34566777655 5789999999999888888888999999999999987631        11 11111111111111222


Q ss_pred             ChHHHHH-H-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198          207 SPAMAVL-C-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       207 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~  284 (301)
                      +...... . +..+.+.+....+ ..+...+..+++|+.+.++.+....+++.++|.+.|++.+..||+..|.+.+++.+
T Consensus       106 ~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~  184 (455)
T TIGR00892       106 NVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL  184 (455)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            2222211 1 1112222211111 22333344577899999999999999999999999999998899999998877766


Q ss_pred             HHHHHH
Q 022198          285 VGTAVW  290 (301)
Q Consensus       285 v~~~~~  290 (301)
                      ++.+.+
T Consensus       185 ~~~v~~  190 (455)
T TIGR00892       185 HCCVCG  190 (455)
T ss_pred             HHHHHH
Confidence            654443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.05  E-value=5.7e-09  Score=94.69  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198          127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD  206 (301)
Q Consensus       127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ......+|.+.+ ++|+|..+.++......++..++.++.|+++||++||+        .+. .+.+..++........+
T Consensus         8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~~~-~~~~~~~i~~~~~~~~~   77 (377)
T PRK11102          8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP--------VIL-GGTLVFALAAVACALAQ   77 (377)
T ss_pred             HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH--------HHH-HHHHHHHHHHHHHHHHc
Confidence            334456677665 68999999999999999999999999999999998652        111 11211111111111222


Q ss_pred             ChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198          207 SPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL  284 (301)
Q Consensus       207 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~  284 (301)
                      +....... ...+.+.+.. .....+...+.. +++|+.+.++.+....+++.++|.+.+.+.++.+|+..|.+.+.+.+
T Consensus        78 ~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  156 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAI  156 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            33222221 1112221111 111223334444 46789999999999999999999999999998889999888766666


Q ss_pred             HHHHHHH
Q 022198          285 VGTAVWN  291 (301)
Q Consensus       285 v~~~~~~  291 (301)
                      ++.+...
T Consensus       157 ~~~~~~~  163 (377)
T PRK11102        157 LAAALVF  163 (377)
T ss_pred             HHHHHHH
Confidence            6544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.04  E-value=1.8e-08  Score=94.89  Aligned_cols=161  Identities=7%  Similarity=0.031  Sum_probs=98.5

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  193 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~  193 (301)
                      ..++..+...+........+|. +++++|+|..+.++......++..++.++.|+++||+|||+.        +. ...+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~   93 (496)
T PRK03893         24 AAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA--------MV-ISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHH
Confidence            3444444444444445555655 557889999999999998999999999999999999987621        11 1111


Q ss_pred             HHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198          194 GPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~  271 (301)
                      ..++.........+.... +.....+.+.+.. .........+.. +++++.+.++.+....+|..++|.+.+.+.++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            111111111122222222 1111122221111 111222334444 4678999999999999999999999999999989


Q ss_pred             chHHHHHHHHHHHH
Q 022198          272 WDDVFKVSVGLYLV  285 (301)
Q Consensus       272 ~~~~f~~~~~~~~v  285 (301)
                      |+..|.+.+...++
T Consensus       173 w~~~f~~~~~~~~~  186 (496)
T PRK03893        173 WRALFFIGILPIIF  186 (496)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988765444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.04  E-value=9.9e-09  Score=95.82  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhc--
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSH--  204 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--  204 (301)
                      +..++| +++++ |+|..+.++......++..++.++.|+++||+|+|+...         .+.+..++....  +..  
T Consensus        48 ~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~---------~~~~~~~i~~~~~~~~~~~  116 (452)
T PRK11273         48 FALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP---------AGLILAAAVMLFMGFVPWA  116 (452)
T ss_pred             HHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHH---------HHHHHHHHHHHHHHhhhcc
Confidence            345566 56667 999999999999999999999999999999999773211         111111111111  111  


Q ss_pred             cCChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHHHHHHH
Q 022198          205 VDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSVG  281 (301)
Q Consensus       205 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f~~~~~  281 (301)
                      ..+....... ...+.+.+ ...+.......+ .++++|+.+.++.+....+|+.+ +|.+...+....+|+..|++.++
T Consensus       117 ~~~~~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~  195 (452)
T PRK11273        117 TSSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF  195 (452)
T ss_pred             cccHHHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            1122222111 11122111 111111122223 34578999999999988888755 44433333333589999988766


Q ss_pred             HHHHHHHH
Q 022198          282 LYLVGTAV  289 (301)
Q Consensus       282 ~~~v~~~~  289 (301)
                      +.++..++
T Consensus       196 ~~~~~~~l  203 (452)
T PRK11273        196 AAILVALF  203 (452)
T ss_pred             HHHHHHHH
Confidence            65554333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.00  E-value=1.8e-08  Score=95.31  Aligned_cols=183  Identities=14%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198          106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK  185 (301)
Q Consensus       106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~  185 (301)
                      -||||.+..+++..+..+.|.+....=++-++.+ ..-|+...+++.....+-..+.++++|.++||+.||+.....   
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~---   81 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILS---   81 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH---
Confidence            5788888888888888777766655445545544 366788888888888888899999999999999876322111   


Q ss_pred             HHHHHhhHH-HHHHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhH
Q 022198          186 IMQSIGFLG-PAFFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAA  262 (301)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l  262 (301)
                        ..+..+. ..+.+.......++..++.+ .+..+. ..+..+...+..++..|+ +...++++++...+++-.+||.+
T Consensus        82 --~~~~~~~~~~L~~l~~~~~~~~~~Ll~~-~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   82 --QLLRALVALLLAVLAFFGLLSPWLLLIL-TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             --HHHHHHHHHHHHHHHHhCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence              0111111 11111111122333332222 222222 233344455566666664 66888899999999999999999


Q ss_pred             hhhhcccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198          263 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST  295 (301)
Q Consensus       263 ~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~  295 (301)
                      +|.++...|....|.+-+..+++..+.+..+++
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999878888888878888877666656543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.98  E-value=1.6e-08  Score=92.77  Aligned_cols=168  Identities=15%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198          109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ  188 (301)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~  188 (301)
                      +|.++..++..++...+......-+|.+ .+++|.|..+.++......+...+..++.|+++||++||+......     
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~-----   75 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIAN-----   75 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHH-----
Confidence            3456666666666666555555555555 4577999999999999899999999999999999999875322211     


Q ss_pred             HHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          189 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                       .......+.. ..  ..++  .+.-...+.+.+ ...+...+...|..| ++++.+.++.+...+++..+||.++|++.
T Consensus        76 -~~~~~~~~~~-~~--~~~~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         76 -GIKLLGCLLM-LF--GIHP--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             -HHHHHHHHHH-HH--HHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0111111111 11  1122  111111122111 222333444556555 67999999999999999999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHH
Q 022198          268 QHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       268 ~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +.. |...+.+.+.+++++.+..
T Consensus       149 ~~~-~~~~~~i~~~~~~~~~~~~  170 (393)
T PRK11195        149 DPH-AEAALAVCALIYLLAALFN  170 (393)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHH
Confidence            874 6666666655555554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.98  E-value=1.4e-08  Score=91.03  Aligned_cols=174  Identities=15%  Similarity=0.187  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      .+|..++.. ..++..+.+..=+-..+++++|+|+.|.+++..++.+.+.+..+.-|.+.||+|.|.+.      ....+
T Consensus        15 ~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~   87 (417)
T COG2223          15 NLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSML   87 (417)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHH
Confidence            444444433 33444555555555677799999999999999999999999999999999999976321      11112


Q ss_pred             hhHHHHHHHHHhhccCCh-HHHHHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          191 GFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      ..+.+++.+.......+. ..++.-+.++.+.+.|+.+.-+ .....+|+..|.+.|++. .||+|.++.+.+...+...
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~-~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPN-ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehccccc-ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            223343333322222221 2222223334433445443222 223345568899999976 9999999999988888888


Q ss_pred             Cc---chHHHHHHHHHHHHHHHHHHhh
Q 022198          270 GS---WDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       270 ~~---~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+   |+.+..+.....+++.+...+.
T Consensus       166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~  192 (417)
T COG2223         166 FGFLAWRNVAGIYVVALAIAAVLAWLG  192 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66   8877777666666655444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.97  E-value=3.7e-08  Score=90.47  Aligned_cols=162  Identities=12%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             HHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhh
Q 022198          118 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSVTTVRKIMQSIGF  192 (301)
Q Consensus       118 ~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~~~~~~~~~~~~~  192 (301)
                      .++.+.........-+|.|++++ |+|.++.|++..+...  .+..++.|+++||+     |||       |+++.. ..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-------r~~l~~-~~   75 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-------RGWLLL-TQ   75 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-------hhHHHH-HH
Confidence            34455555556678899999865 9999999998766543  58889999999999     554       222221 11


Q ss_pred             HHHHH--HHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          193 LGPAF--FLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      +..++  ....+.........+.......+. .....+..-+...|..| ++|+.+.++......+|..+++.+.+++.+
T Consensus        76 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         76 VGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            11111  111121111111211111111111 11111222233344444 569999999888888899999999999988


Q ss_pred             c-CcchHHHHHHHHHHHHHHHHH
Q 022198          269 H-GSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       269 ~-~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      + .||+..|.+.++..+++.+..
T Consensus       156 ~~~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        156 RVLGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHH
Confidence            6 589999998877766655543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=8.2e-08  Score=89.16  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      |.++..++..+......+....-.|.+-++++|+|.+|.+++..++.+++.+..+..|++.||+|.|+        ... 
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~--------v~~-  104 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR--------WTV-  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--------HHH-
Confidence            45666555544433344444444555555589999999999999999999999999999999999762        111 


Q ss_pred             HhhHHHHHHHHHhhc-----cCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhH
Q 022198          190 IGFLGPAFFLTQLSH-----VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAA  262 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l  262 (301)
                      ...+..++.......     .++.... +.-...+.+...+  ........+..| +++|.+.|+....+++|..+++.+
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f--~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANF--ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhH--HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            111111111111111     1222222 2122222221112  112223333344 679999999877788877766555


Q ss_pred             hhh
Q 022198          263 TGY  265 (301)
Q Consensus       263 ~g~  265 (301)
                      ...
T Consensus       183 ~p~  185 (462)
T PRK15034        183 APL  185 (462)
T ss_pred             HHH
Confidence            543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.96  E-value=6e-08  Score=95.11  Aligned_cols=149  Identities=18%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198          130 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA  209 (301)
Q Consensus       130 ~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (301)
                      ...+| .+++++|++..+.+++.....++..+|.++.|+++||+|||+.        +. ..++...+.........+..
T Consensus       187 s~ilp-~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~--------li-i~lil~~i~~ll~afa~s~~  256 (742)
T TIGR01299       187 GFVLP-SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC--------LL-ICLSVNGFFAFFSSFVQGYG  256 (742)
T ss_pred             HHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHHHHHHHHHHHHHhhHH
Confidence            34455 4556789999999999999999999999999999999997632        11 11111111111111222222


Q ss_pred             HHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-------------CcchH
Q 022198          210 MAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-------------GSWDD  274 (301)
Q Consensus       210 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-------------~~~~~  274 (301)
                      .++ .-...+++.+.. .+.......|..| +.|+...++.+.+..+|+.+++.+...+..+             .+|+.
T Consensus       257 ~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~  335 (742)
T TIGR01299       257 FFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV  335 (742)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence            222 222223332221 1223344455555 6899999999999999999998877665543             25777


Q ss_pred             HHHHHHHHHHHHHHH
Q 022198          275 VFKVSVGLYLVGTAV  289 (301)
Q Consensus       275 ~f~~~~~~~~v~~~~  289 (301)
                      .+.+.+...+++.+.
T Consensus       336 l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       336 FVIVCAFPCVFAIGA  350 (742)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777665555554433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.96  E-value=1e-06  Score=82.76  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             CchhhhHhhccCcc--hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhh
Q 022198            2 PAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS   57 (301)
Q Consensus         2 p~~~~~i~~~~p~~--~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~   57 (301)
                      |+..++++|.+|++  +|.++.++.+.+.++|..+++.+.+++.+.+|||+.|.+.++
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            55678899999986  799999999999999999999999999999999999998443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.94  E-value=4.5e-08  Score=101.52  Aligned_cols=179  Identities=16%  Similarity=0.085  Sum_probs=99.2

Q ss_pred             HhhcChhHHHHHHHHHhhHHHHHHH----HHhHHHHHHHHhCCCc-chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 022198          105 LILSKPPVWALIVSHFCHNWGTFIL----LTWMPTYYNQVLHFNL-TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS  179 (301)
Q Consensus       105 ~ll~~~~~~~~~~~~~~~~~~~~~~----~~wlp~~l~~~~g~s~-~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~  179 (301)
                      .++|++.++.++...++..++-+..    ..+.+..+.+..+.+. ...++......+...+..+++|+++||++||+..
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            4677777776666655554443322    2222222222222222 2356666677788899999999999999987321


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhh-hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHh
Q 022198          180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTD-AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGV  257 (301)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~  257 (301)
                           +.+..............+.. .+...++++ ....+.+ .+..+...+...+.. +++++.++|+.++..++|..
T Consensus        86 -----~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~-~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~  158 (1140)
T PRK06814         86 -----KILKFAEIGIAALAIYGFHL-NSVPLLFAA-LFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL  158 (1140)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH-hhHHHHHHH-HHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence                 01111111111111111111 223222222 1122221 222233344444554 46789999999999999999


Q ss_pred             HHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          258 FGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       258 ~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +||.++|++.+..+|...|.......+++.+..
T Consensus       159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (1140)
T PRK06814        159 LGTIIGGLATISGNFVILVALLMGIAVLGWLAS  191 (1140)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999889988844444444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.94  E-value=1.4e-08  Score=95.30  Aligned_cols=158  Identities=15%  Similarity=0.010  Sum_probs=93.0

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      +..-.|. +++++|+|..+.|++.....++..++.++.|+++||+|+|+.....    +...................+.
T Consensus        48 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~----~~~~~~~~~~~~~~~~~~~~~~  122 (467)
T PRK09556         48 FKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFL----LILSAICMLGFGASLGSGSVSL  122 (467)
T ss_pred             hhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHH----HHHHHHHHHHHHHHHhcccchH
Confidence            3444665 5568999999999999999999999999999999999987422110    0000111111111111112222


Q ss_pred             HHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHH
Q 022198          209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLY  283 (301)
Q Consensus       209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~  283 (301)
                      ...+.+ ...+.+.+ ...+.......+.. +++||.+.|+.+..+++|+.+++.+..++.++   .+|+..|.+.+++.
T Consensus       123 ~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~  201 (467)
T PRK09556        123 GLMIALWALSGFFQS-TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA  201 (467)
T ss_pred             HHHHHHHHHHHHHHh-ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence            222222 11122111 11122233344444 46899999999999999999999888777664   25888887766555


Q ss_pred             HHHHHHHHh
Q 022198          284 LVGTAVWNL  292 (301)
Q Consensus       284 ~v~~~~~~~  292 (301)
                      ++.++.+..
T Consensus       202 ~~~~i~~~~  210 (467)
T PRK09556        202 LIIGFIGLR  210 (467)
T ss_pred             HHHHHHHHH
Confidence            544443333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.93  E-value=1.2e-07  Score=85.58  Aligned_cols=174  Identities=18%  Similarity=0.109  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  190 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~  190 (301)
                      ..+.+.++.|+....=+....-+|.. .+++|.|..++|++...+.++..++.++-..++||+.||+....         
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~---------   83 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG---------   83 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH---------
Confidence            45566666676666666677778774 56889999999999999999999999999999999987632111         


Q ss_pred             hhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          191 GFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      .+....+.........+-...+. =...+...+.|.. .......+. +|++++.+.+++++.-.++..+|..++.++-|
T Consensus        84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            11111111111112222222211 1112222222211 112223344 56799999999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198          269 HGSWDDVFKVSVGLYLVGTAVWNLFST  295 (301)
Q Consensus       269 ~~~~~~~f~~~~~~~~v~~~~~~~~~~  295 (301)
                      ..||+..|+..+.+.+++.+.......
T Consensus       163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         163 LFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999988888877655544433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.92  E-value=1.7e-10  Score=109.34  Aligned_cols=174  Identities=17%  Similarity=0.249  Sum_probs=0.0

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc---------------------C-CchhHHhhhhhH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---------------------G-WPSVFYSFGSLG   59 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~---------------------g-WR~~F~~~g~l~   59 (301)
                      |...+|+=|..++|+-+..+|++++...+|+++|..+++.....|                     | |=.=|++.|.+.
T Consensus       160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~  239 (539)
T PF03137_consen  160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            455688999999999999999999999999999999887665321                     2 545555555555


Q ss_pred             HHHHHHHhhhccCCCCCC--CCCCH-HHHH---HHHhccCCCC-------CCCC--CChHHhhcChhHHHHHHHHHhhHH
Q 022198           60 TVWFTVWLSKAHSSPAED--PQLRP-AEKK---LIVSSCASKE-------PVKT--IPWGLILSKPPVWALIVSHFCHNW  124 (301)
Q Consensus        60 ~~~~~~~~~~~~~~p~~~--~~~~~-~~~~---~~~~~~~~~~-------~~~~--~~~~~ll~~~~~~~~~~~~~~~~~  124 (301)
                      ++..+..+.+-++.|+.+  ++.++ ++++   ...++..+++       ..++  ...+++++||.+....+...+...
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            443322222212223221  00000 0000   0000000000       0011  124668999998887777777777


Q ss_pred             HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHHH
Q 022198          125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVS  175 (301)
Q Consensus       125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~~  175 (301)
                      ...++.+++|-|++++++.+++++.++.....+ ++++|.+++|++..|+.-
T Consensus       320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl  371 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL  371 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence            888899999999999999999999998765554 778999999999999853

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00896 CynX cyanate transporter

Probab=98.92  E-value=4.9e-08  Score=87.98  Aligned_cols=147  Identities=21%  Similarity=0.217  Sum_probs=92.1

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      ....+|. +++++|+|.++.++......++..++.++.|+++||+++|+.        +. .+.+...+..... ..++.
T Consensus        19 ~~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        19 VGPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS--------VA-AGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             CcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH--------HH-HHHHHHHHHHHHH-HhccH
Confidence            3456666 455789999999999999999999999999999999997631        11 1111111111111 22233


Q ss_pred             HHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC--cchHHHHHHHHHHHH
Q 022198          209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLV  285 (301)
Q Consensus       209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~--~~~~~f~~~~~~~~v  285 (301)
                      ...+.. ...+.+.+.. .........+..|++++.+.++.+....+|..+++.+.+.+.++.  +|+..|...++..++
T Consensus        88 ~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        88 ALLFAGTALIGVGIAII-NVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHHHH-hccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            222211 1112222211 111122334455778899999999999999999999999988773  388888766555444


Q ss_pred             HH
Q 022198          286 GT  287 (301)
Q Consensus       286 ~~  287 (301)
                      +.
T Consensus       167 ~~  168 (355)
T TIGR00896       167 AL  168 (355)
T ss_pred             HH
Confidence            43

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.91  E-value=8.9e-08  Score=88.91  Aligned_cols=136  Identities=14%  Similarity=0.041  Sum_probs=82.4

Q ss_pred             cchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhccCCh-HHHHHHHHHHHhhh
Q 022198          145 LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTD  222 (301)
Q Consensus       145 ~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  222 (301)
                      ..+.++......++..++.++.|+++||+|||+.       .+... ......+.........+. ...+.-...+.+.+
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  142 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-------LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG  142 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-------HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence            7899999999999999999999999999997631       11111 111111111111121111 11111122222222


Q ss_pred             hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHh---hhhcccCcchHHHHHHHHHHHHHHH
Q 022198          223 AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAAT---GYILQHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~---g~l~~~~~~~~~f~~~~~~~~v~~~  288 (301)
                      .. .+.......|.. +++|+.+.++.+....+|..+++.+.   +...+..+|+..|.+.+...++..+
T Consensus       143 ~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  211 (481)
T TIGR00879       143 IA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL  211 (481)
T ss_pred             HH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence            11 122233344554 57899999999999999999999988   6666678899999886555544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.89  E-value=2e-07  Score=86.01  Aligned_cols=166  Identities=10%  Similarity=0.048  Sum_probs=97.3

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  193 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~  193 (301)
                      .....++...+........+|. +++++|+|..++++......++..++++..|++.||+|+|+.        + ..+..
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~~~-~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~--------~-~~g~~   76 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMVPQ-FQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG--------I-LLGLF   76 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--------H-HHHHH
Confidence            3333344333333333456665 478899999999999999999999999999999999997631        1 11221


Q ss_pred             HHHHHHHHh---hccCChHHH-HHHHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          194 GPAFFLTQL---SHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       194 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      ..++....+   ...++.... +.....+.+.+... +.......+. ++++++...++.+...++|..++|.+.+.+..
T Consensus        77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885        77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111111   111222222 22222233332221 1111222223 34678888899999999999999999887743


Q ss_pred             c--------------------------CcchHHHHHHHHHHHHHHHHH
Q 022198          269 H--------------------------GSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       269 ~--------------------------~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      .                          .+|+..|.+.+++.++..+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                          248888877766555544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.88  E-value=1.7e-07  Score=88.52  Aligned_cols=173  Identities=11%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcH
Q 022198          106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSV  180 (301)
Q Consensus       106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~  180 (301)
                      ..++|+.+......+.+....+....-+|.++++. |.|.++.+....+. ... ++.++.|.++||+     |||+   
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~-~~~-~~~~l~gpl~Dr~~~~~~Grrr---   81 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVG-QAY-VFKFLWSPLMDRYTPPFLGRRR---   81 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHH-HHHHHHHHHHHcccccCCCCch---
Confidence            44556666666666666666677778899998765 99999999974332 222 6889999999999     6652   


Q ss_pred             HHHHHHHHHHhhHHHHHH--HHHhhc-cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhH
Q 022198          181 TTVRKIMQSIGFLGPAFF--LTQLSH-VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLA  255 (301)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lg  255 (301)
                          .++.. ..+..++.  ...+.. .++..... .....+++. ........+...|.. +++|+.+.++.+...++|
T Consensus        82 ----~~ll~-~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~-a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG  155 (491)
T PRK11010         82 ----GWLLA-TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS-ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA  155 (491)
T ss_pred             ----HHHHH-HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence                22221 11111111  111111 12221111 111111111 111111223344554 478999999999999999


Q ss_pred             HhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHH
Q 022198          256 GVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       256 g~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      ..+++.+.+++.++ .||+..|.+.++..+++.+..
T Consensus       156 ~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        156 MLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999994 689999998877766664443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=4.1e-08  Score=94.29  Aligned_cols=173  Identities=15%  Similarity=0.220  Sum_probs=118.7

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------------------CCchhHHhhhhhHHHH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------------------GWPSVFYSFGSLGTVW   62 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------------------gWR~~F~~~g~l~~~~   62 (301)
                      |...+|+=|...+++-...+|++++...+|+++|..+++.....|                   -|..=|++.|.+.++.
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            445678889999999999999999999999999999998886421                   2666677777766554


Q ss_pred             HHHHhhhccCCCCCCCCCCHHHHHHHHhccC--CCCCC-----CCC--ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhH
Q 022198           63 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEPV-----KTI--PWGLILSKPPVWALIVSHFCHNWGTFILLTWM  133 (301)
Q Consensus        63 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl  133 (301)
                      .+.++.+-++.|+..++.+.++.+....+..  .+++.     ++.  ..+++++||.+....+...+....+.++.+|+
T Consensus       336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence            4333322223333221111111111111110  00000     011  24668999998888888888888889999999


Q ss_pred             HHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHH
Q 022198          134 PTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLV  174 (301)
Q Consensus       134 p~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~  174 (301)
                      |-||++++|.+.+.+..+.....+ ++++|.+++|++..|+.
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            999999999999999998865554 66799999999998874

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.84  E-value=3.5e-08  Score=92.41  Aligned_cols=145  Identities=18%  Similarity=0.179  Sum_probs=93.0

Q ss_pred             HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhccCChHHHHHHHH
Q 022198          139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSHVDSPAMAVLCMA  216 (301)
Q Consensus       139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  216 (301)
                      .++|+|..+.|.+.....++..++.+++|+++||+++|....         ...+...+....  .....+....+. .-
T Consensus        69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~---------~~~~~~~~~~~~~~~~~~~~~~~l~~-~r  138 (465)
T TIGR00894        69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIG---------IGMFLSSVISIVIPWAAGGGIALVVF-CR  138 (465)
T ss_pred             CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhH---------HHHHHHHHHHHHHHHHHHcCchHHHH-HH
Confidence            368999999999999999999999999999999999773211         111111111111  111111111111 11


Q ss_pred             HHHhhh-hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          217 CSQGTD-AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       217 ~~~~~~-~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ...|.+ ....+.......+..| ++|+.+.++.+...++|..++|.+.+++.++ .+|+..|.+.++..++..+.+..+
T Consensus       139 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            112221 1111222333445554 7899999999999999999999999999998 599999988777666655555444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.84  E-value=3.7e-08  Score=91.20  Aligned_cols=168  Identities=17%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--H
Q 022198          122 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--L  199 (301)
Q Consensus       122 ~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~  199 (301)
                      .+........|++.|+++++|+|+.++|.+.....+...+..++.|+++||.++|.-++   |+++. .+....++.  .
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr---r~~i~-~~~~~~~i~~~~   86 (437)
T TIGR00792        11 NNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKF---RPWLL-IGAIPFSIVLVL   86 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCc---chhHH-HhHHHHHHHHHH
Confidence            34455556789999999999999999999999999999999999999999854221000   12221 221111111  1


Q ss_pred             HHhhccCC-h--HHHHHHHHHHHhhh-hhhhcchhhhhhcc--CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc-----
Q 022198          200 TQLSHVDS-P--AMAVLCMACSQGTD-AFSQSGLYSNHQDI--APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-----  268 (301)
Q Consensus       200 ~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~-----  268 (301)
                      .......+ .  ...........+.. .+...+..+...+.  .+++|+...++.+..+.+|+.+++.+.+.+..     
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~  166 (437)
T TIGR00792        87 LFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG  166 (437)
T ss_pred             HHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            11111111 1  11111111111111 11111222333333  34678888888888888887777666655542     


Q ss_pred             --cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          269 --HGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       269 --~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                        ..+|...+.+.+++.++..+.....
T Consensus       167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       167 DDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcC
Confidence              3578888877777666665544333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.83  E-value=1.6e-07  Score=97.46  Aligned_cols=158  Identities=10%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcch--hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198          105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE--SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  182 (301)
Q Consensus       105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~--~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~  182 (301)
                      .+++++.++..++..++..++..+...-+..++.+.++.+.+.  .++...+..++..++.+++|+++||+|||+.....
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~   83 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIV   83 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHH
Confidence            3677777777777776666665555555555666666665443  56667777888999999999999999987311110


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHH
Q 022198          183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                           ..+..+...+... .....+...++.+ ...+.+.+ +..+...+...+.. ++.++.+.|+.+....+|..+++
T Consensus        84 -----~~~~~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~  156 (1146)
T PRK08633         84 -----KLFEVGLTLLIVL-AYYLGWFWLAFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT  156 (1146)
T ss_pred             -----HHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence                 0000111111111 1111222222211 11122111 11222233444554 46899999999999999999999


Q ss_pred             hHhhhhccc
Q 022198          261 AATGYILQH  269 (301)
Q Consensus       261 ~l~g~l~~~  269 (301)
                      .+.+++.+.
T Consensus       157 ~l~~~l~~~  165 (1146)
T PRK08633        157 ALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHh
Confidence            999998875

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.83  E-value=6.2e-08  Score=88.81  Aligned_cols=179  Identities=15%  Similarity=0.195  Sum_probs=115.0

Q ss_pred             HhhcCh-hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC----CCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCC
Q 022198          105 LILSKP-PVWALIVSHFCHNWGTFILLTWMPTYYNQVLH----FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGL  178 (301)
Q Consensus       105 ~ll~~~-~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g----~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~  178 (301)
                      ..+++| .++.++..-++--+.+|++-.-+-.|+..+.+    +|.+++.-......----...+++||++||+ |+|+ 
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~-   93 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR-   93 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-
Confidence            366765 46667777788889999999888899998888    9988877766665544456889999999998 4432 


Q ss_pred             cHHHHHHHHHHHhhHHHHHHHHHhhcc--CCh-H--HHHHHHHHHHhhhhhhhcchhhh-hhccCCCchHHHHHHHhHHH
Q 022198          179 SVTTVRKIMQSIGFLGPAFFLTQLSHV--DSP-A--MAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAG  252 (301)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~a~g~~~~~~  252 (301)
                             .+. .+.+..++-.......  ..+ .  ..+.++.++.|..-.+.+.+... .++..|| |-.+.++.+...
T Consensus        94 -------tI~-lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~i  164 (498)
T COG3104          94 -------TIV-LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGI  164 (498)
T ss_pred             -------HHH-HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEe
Confidence                   111 1122222211111111  112 1  22233333333222222222221 1222333 555667788889


Q ss_pred             hhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          253 VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       253 ~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ++|+.++|.+.+++.++.||+.+|..+++-..++++.+.+.
T Consensus       165 NiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         165 NIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             ehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999998888887776554

>PRK10133 L-fucose transporter; Provisional

Probab=98.81  E-value=8.4e-07  Score=82.62  Aligned_cols=142  Identities=11%  Similarity=0.123  Sum_probs=84.5

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+.++............+|.+ ++++|.|..+.++......++..++.+..|+++||+|+|+.        +. .+...
T Consensus        31 ~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~--------l~-~g~~~  100 (438)
T PRK10133         31 LCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--------II-TGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHH
Confidence            3444444445555566778775 88999999999999999999999999999999999997631        11 11211


Q ss_pred             HHHHHHHh---hccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          195 PAFFLTQL---SHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       195 ~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .++.....   ...++....+. ....+.+.+... ........+..|+ +++...+..+....+|..++|.+.+.+.
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111   12223322222 222233332221 1112222344454 4455678888888999999998876543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.81  E-value=1.3e-07  Score=72.52  Aligned_cols=132  Identities=17%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchh
Q 022198          152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLY  230 (301)
Q Consensus       152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (301)
                      .....++..++.++.|++.||++||+.        +. ......++........++....... ...+.+.+.. .+...
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~   73 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPV--------LL-VGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA-LVAGA   73 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHH--------HH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHhHH
Confidence            345567888999999999999987631        11 1111111111111122233222221 1112222111 12223


Q ss_pred             hhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          231 SNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       231 ~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ....|..| ++++...++.+...+++..++|.+.+.+.++.+|+..+.+.....+++.+....+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            33344444 6789999999999999999999999999998889888887776666665554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.78  E-value=3e-07  Score=82.84  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=86.3

Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhhHHHHHH--HHHhh
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSVTTVRKIMQSIGFLGPAFF--LTQLS  203 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~  203 (301)
                      .-+|.+++ +.|+|.++.++.... .+...+ .++.|+++||+     |||       |.++. ...+..++.  ...+.
T Consensus         9 ~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr-------~~~l~-~~~~~~~~~~~~l~~~   77 (356)
T TIGR00901         9 NTLPYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRR-------RSWLV-LTQVLLLSLLLILSFL   77 (356)
T ss_pred             hHHHHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCcc-------HHHHH-HHHHHHHHHHHHHHcC
Confidence            34566665 569999999998644 344444 88999999998     443       22222 111111111  11111


Q ss_pred             ccCChHHHHHHHHHHHhhh-hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc--------ch
Q 022198          204 HVDSPAMAVLCMACSQGTD-AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS--------WD  273 (301)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~--------~~  273 (301)
                      ........+.......+.. ........+...|.. +++|+.+.++.....++|..+++.+.+.+.++.+        |+
T Consensus        78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence            1111111111111111111 111122223344544 5789999999998899999999999999988866        99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022198          274 DVFKVSVGLYLVGTAV  289 (301)
Q Consensus       274 ~~f~~~~~~~~v~~~~  289 (301)
                      ..|.+.++..+++.+.
T Consensus       158 ~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       158 YIFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887777665544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.75  E-value=3.8e-07  Score=85.22  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=99.8

Q ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH----HHHcCCcHHHHHHHHHHHh
Q 022198          116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT----LVSKGLSVTTVRKIMQSIG  191 (301)
Q Consensus       116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr----~~~r~~~~~~~~~~~~~~~  191 (301)
                      ....+...+++.....+++.|++ ++|.+..+.+.+.....+.+.+..++.|+++||    +|||+.       .+. .+
T Consensus        10 ~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-------~il-~g   80 (477)
T TIGR01301        10 ASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-------FIA-AG   80 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-------HHH-HH
Confidence            33334445555556788888875 679999999999999999999999999999994    887632       221 11


Q ss_pred             hHHHHHHHHHhhccCC-------------hHHHHHHHHHHH---hhh-hhhhcchhhhhhccCC-Cc--hHHHHHHHhHH
Q 022198          192 FLGPAFFLTQLSHVDS-------------PAMAVLCMACSQ---GTD-AFSQSGLYSNHQDIAP-RY--SGVLLGLSNTA  251 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p-~~--~g~a~g~~~~~  251 (301)
                      ....++.+..+....+             ....+.....++   -+. ...+.+.-+...|..| ++  ++.+.++.+..
T Consensus        81 ~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~  160 (477)
T TIGR01301        81 AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF  160 (477)
T ss_pred             HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence            2112222111211111             011111111111   001 1112223344556655 33  36888988888


Q ss_pred             HhhHHhHHHhHhhhhc--cc-------------CcchHHHHHHHHHHHHHHHHHHhhcCC
Q 022198          252 GVLAGVFGTAATGYIL--QH-------------GSWDDVFKVSVGLYLVGTAVWNLFSTG  296 (301)
Q Consensus       252 ~~lgg~~~~~l~g~l~--~~-------------~~~~~~f~~~~~~~~v~~~~~~~~~~~  296 (301)
                      .++|+.+++.+.++..  +.             .+....|.+.+++.+++.+.-....+|
T Consensus       161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            8999999998887641  11             145678888777777766554444333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.75  E-value=4.3e-07  Score=85.20  Aligned_cols=140  Identities=14%  Similarity=0.116  Sum_probs=81.9

Q ss_pred             CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh-------ccCChH---HH
Q 022198          142 HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-------HVDSPA---MA  211 (301)
Q Consensus       142 g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~  211 (301)
                      |.+..+.++......++..++.++.|+++||+|||+....      .........+.. .+.       ...+..   ..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~------~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~l  123 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI------AAVLFFISALGS-AWPEFGFTSIGPDNTGYVPEF  123 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH------HHHHHHHHHHHH-HhhccccccccccchhHHHHH
Confidence            8888999999999999999999999999999998732111      001111111111 110       001111   11


Q ss_pred             HHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc--------ccCcchHHHHHHHH
Q 022198          212 VLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL--------QHGSWDDVFKVSVG  281 (301)
Q Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~--------~~~~~~~~f~~~~~  281 (301)
                      +.. ...+++.+.. .+...+...|..| ++|+.+.++.+....+|..+++.+.+.+.        ++.||+..|.+.++
T Consensus       124 ~~~R~l~G~~~g~~-~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~  202 (479)
T PRK10077        124 VIYRIIGGIGVGLA-SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI  202 (479)
T ss_pred             HHHHHHHhhhHhHH-hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence            111 1112222211 1222334445554 68999999988888888888876655443        34589999988766


Q ss_pred             HHHHHHHH
Q 022198          282 LYLVGTAV  289 (301)
Q Consensus       282 ~~~v~~~~  289 (301)
                      +.++..+.
T Consensus       203 ~~~~~~~~  210 (479)
T PRK10077        203 PALLFLML  210 (479)
T ss_pred             HHHHHHHH
Confidence            66655443

>PTZ00207 hypothetical protein; Provisional

Probab=98.73  E-value=1.1e-06  Score=84.01  Aligned_cols=156  Identities=10%  Similarity=0.056  Sum_probs=87.7

Q ss_pred             HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc
Q 022198          125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH  204 (301)
Q Consensus       125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      ..|++..+.|. +++++|+|..+.+.+.... .......+..|+++||+|+|...         .++.+...+.......
T Consensus        42 ~~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vl---------lig~ll~~iG~ll~al  110 (591)
T PTZ00207         42 FMYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIF---------VLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHH---------HHHHHHHHHHHHHHHH
Confidence            45666666665 6788999999999887653 34445667789999999976321         1111111111111111


Q ss_pred             c------CChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHH
Q 022198          205 V------DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVF  276 (301)
Q Consensus       205 ~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f  276 (301)
                      .      .+..... .....+.+.+.+. ........+..|++||.+.|+......+|+++ ++...+++.+  +|...|
T Consensus       111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~f  187 (591)
T PTZ00207        111 TFQEVIEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYF  187 (591)
T ss_pred             HhcccccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHH
Confidence            1      1222211 1112222221111 11122233456889999999999999999986 4444444432  477777


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 022198          277 KVSVGLYLVGTAVWNLFS  294 (301)
Q Consensus       277 ~~~~~~~~v~~~~~~~~~  294 (301)
                      .+.++..++..+++..+.
T Consensus       188 l~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        188 FFLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHHhhe
Confidence            777666666555555553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.72  E-value=4.4e-07  Score=82.93  Aligned_cols=171  Identities=13%  Similarity=0.015  Sum_probs=94.8

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh--hhhHHHHHHHHHHH-HHHHHHHHHcCCcHHHHHHHHHHHh
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC--VLPWLTMAFSANLG-GWIADTLVSKGLSVTTVRKIMQSIG  191 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~--~~~~i~~~~g~~~~-G~l~Dr~~~r~~~~~~~~~~~~~~~  191 (301)
                      ....++.+...+......+|.|+++. |+|.++.|++.  .++.+...+.+++. ++.+||+|||+       .++....
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-------~~i~~~~   77 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-------SWVLPMQ   77 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-------hHHHHHH
Confidence            34455666666666778999999865 99999999973  55566666666666 55788887663       2211111


Q ss_pred             hHHH--HHHHHHhhccCChHHHHHHHHHHHhhhhhhhcc-hhhh-hhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          192 FLGP--AFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSG-LYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      +...  ......+....+.............+....+.. .-+. .++..++.++...+.......+|..+++...+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~  157 (390)
T TIGR02718        78 CLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF  157 (390)
T ss_pred             HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  111111111112111111111111111111110 0111 12233445576666666666788888888888999


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          268 QHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       268 ~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ++.||+..|.+.+++.++..+....+
T Consensus       158 ~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       158 GKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99899999999887776655554333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.70  E-value=1.4e-06  Score=80.49  Aligned_cols=133  Identities=14%  Similarity=0.002  Sum_probs=83.0

Q ss_pred             HhHHHHHHHHhCCCcch-hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198          131 TWMPTYYNQVLHFNLTE-SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA  209 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~-~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (301)
                      .+...++.+++|+|..+ .|.+......+..+..+.+|+++||+|.|+        .+. ...+...++........+..
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~--------vL~-l~~l~Wsl~t~L~~fa~Sl~  116 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP--------VLV-LQALSFVCVWLLLLLGTSVW  116 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH--------HHH-HHHHHHHHHHHHHHHHHHHH
Confidence            44556888899999999 999999999999999999999999998652        221 22221211111111111221


Q ss_pred             HHHHH-HHHHHhhhhhhhcchhhhhh-ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198          210 MAVLC-MACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV  275 (301)
Q Consensus       210 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~  275 (301)
                      .+.++ +..+.+-+.. . ..+.... -.++++|+.+.++.+....+|..+++.+.+++ ...||+.-
T Consensus       117 ~L~i~R~llGvaEA~~-~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y  181 (511)
T TIGR00806       117 HMQLMEVFYSVTMAAR-I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISY  181 (511)
T ss_pred             HHHHHHHHHHHHHHHH-H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhH
Confidence            11111 1112111111 1 2222222 34567899999999999999999999999994 45567753

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.70  E-value=1.2e-07  Score=86.31  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=95.0

Q ss_pred             hcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q 022198          107 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI  186 (301)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~  186 (301)
                      +||+.+|.....+++..+.+-....+.|.+|++..|+|.+|+|.+.+...+...+.+++.|.++||.+.|+.....    
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~----   79 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF----   79 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH----
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH----
Confidence            4677888777777766666666788899999988899999999999999999999999999999999876422111    


Q ss_pred             HHHHhhHHHHHHH-HHhhc--cCChHHHHHHHHHHHhhhhhhhcchhhhh---hccCCCchHHHHHHHhHHHhhHHhHHH
Q 022198          187 MQSIGFLGPAFFL-TQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYSNH---QDIAPRYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       187 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                       .....+..+.+. ..+..  ..+..  +..+..+..++ +...+.....   .|...++.+.-.|=.-..|.+|-+++.
T Consensus        80 -i~~l~~l~~pff~~v~~pll~~n~~--lg~iig~i~l~-~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s  155 (412)
T PF01306_consen   80 -IAILLLLFGPFFIYVFGPLLQSNFW--LGAIIGGIYLG-LVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIAS  155 (412)
T ss_dssp             -HHHHHHTCHHHHHHTHHHHHHTT-H--HHHHHTTTTTT-TTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHH
Confidence             111111111111 11110  11111  11111111111 1111111111   111122334445556688889999999


Q ss_pred             hHhhhhcccCcchHHHHHHHHHHHH
Q 022198          261 AATGYILQHGSWDDVFKVSVGLYLV  285 (301)
Q Consensus       261 ~l~g~l~~~~~~~~~f~~~~~~~~v  285 (301)
                      .+.|.+.+. +-+..|++..+..++
T Consensus       156 ~~~G~L~~i-~p~~~fwi~s~~~~i  179 (412)
T PF01306_consen  156 LLAGILFNI-NPNIIFWIASAAAII  179 (412)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHhheeeee-CccHHHHHHHHHHHH
Confidence            999999876 234566655444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.68  E-value=1.8e-06  Score=79.94  Aligned_cols=60  Identities=23%  Similarity=0.206  Sum_probs=49.5

Q ss_pred             HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      +..++....+-.....++.++++++|+|..+.|++.....++..++++..|+++||+++|
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~   68 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSA   68 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334444334444568899999999999999999999999999999999999999999764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.66  E-value=3.4e-06  Score=78.34  Aligned_cols=148  Identities=13%  Similarity=0.096  Sum_probs=75.9

Q ss_pred             HHhHHHHHHHHhC---CCcchh---hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198          130 LTWMPTYYNQVLH---FNLTES---GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  203 (301)
Q Consensus       130 ~~wlp~~l~~~~g---~s~~~~---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ......++.++++   .+..+.   +.......++..+|.+++|+++||+|||+.        + .......++......
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~--------l-~~~~~~~~~~~~~~~  111 (432)
T PRK10406         41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS--------M-LISVCMMCFGSLVIA  111 (432)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--------H-HHHHHHHHHHHHHHh
Confidence            4555567777764   444432   233344456667999999999999997631        1 111211211111111


Q ss_pred             ccCCh--------HHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc------
Q 022198          204 HVDSP--------AMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL------  267 (301)
Q Consensus       204 ~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~------  267 (301)
                      ..++.        ...+.+ ...+.+.+.. .+.......|. ++++|+...++.+.....|..+++.+...+.      
T Consensus       112 ~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  190 (432)
T PRK10406        112 CLPGYETIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA  190 (432)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            11111        111111 1122222211 12222334454 4578898888776666566566655443332      


Q ss_pred             --ccCcchHHHHHHHHHHHHHH
Q 022198          268 --QHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       268 --~~~~~~~~f~~~~~~~~v~~  287 (301)
                        +..||+..|.+.++..++..
T Consensus       191 ~~~~~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        191 ELREWGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             HHhccchHHHHHHHHHHHHHHH
Confidence              24689999988766665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.63  E-value=4.3e-06  Score=78.95  Aligned_cols=149  Identities=15%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             HHhHHHHHHHHhCCCcchh-hhH-----hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198          130 LTWMPTYYNQVLHFNLTES-GLF-----CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  203 (301)
Q Consensus       130 ~~wlp~~l~~~~g~s~~~~-~~~-----~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ..+.-.++.++++.+.++. +..     .....++..+|.++.|+++||+|||+.        + ....+..++......
T Consensus        35 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~--------l-~~~~~l~~i~~~~~a  105 (490)
T PRK10642         35 YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI--------L-AITIVIMSISTFCIG  105 (490)
T ss_pred             HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--------H-HHHHHHHHHHHHHHH
Confidence            3344456777776444331 221     244567889999999999999998731        1 122222222222122


Q ss_pred             ccCChHH--------HHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc------
Q 022198          204 HVDSPAM--------AVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL------  267 (301)
Q Consensus       204 ~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~------  267 (301)
                      ..++...        .+.+ ...+++.+.. .+.......|.. +++||...++.+....+|..+++.+...+.      
T Consensus       106 ~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~  184 (490)
T PRK10642        106 LIPSYATIGIWAPILLLLCKMAQGFSVGGE-YTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA  184 (490)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHhHhHhh-HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            2223211        1111 1112222211 122223344555 478899888887766666666665443332      


Q ss_pred             --ccCcchHHHHHHHHHHHHHHH
Q 022198          268 --QHGSWDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       268 --~~~~~~~~f~~~~~~~~v~~~  288 (301)
                        ++.||+..|.+.+...+++.+
T Consensus       185 ~~~~~gWR~~f~i~~~~~l~~~~  207 (490)
T PRK10642        185 NFLDWGWRIPFFIALPLGIIGLY  207 (490)
T ss_pred             HhcCccHHHHHHHHHHHHHHHHH
Confidence              246899999886655554433

>PRK09952 shikimate transporter; Provisional

Probab=98.62  E-value=6.3e-06  Score=76.69  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=77.8

Q ss_pred             HHHhHHHHHHHHh--CCCcchhhhHh-----hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH
Q 022198          129 LLTWMPTYYNQVL--HFNLTESGLFC-----VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ  201 (301)
Q Consensus       129 ~~~wlp~~l~~~~--g~s~~~~~~~~-----~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  201 (301)
                      +....|.++.+++  +.++.+ +...     ....++..+|.++.|+++||+|||+        .+ .......++....
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~--------~l-~~~~~~~~~~~~~  110 (438)
T PRK09952         41 YGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR--------ML-MLTVWMMGIATAL  110 (438)
T ss_pred             HHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH--------HH-HHHHHHHHHHHHH
Confidence            3344555666655  677663 4432     2344567789999999999999762        11 1222222222222


Q ss_pred             hhccCChH--------HHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcc---
Q 022198          202 LSHVDSPA--------MAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ---  268 (301)
Q Consensus       202 ~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~---  268 (301)
                      ....++..        ..+.+ ...+.+.+.. .+.......|.. +++|+...+..+....+|..+++.+...+..   
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~  189 (438)
T PRK09952        111 IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGE-WGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTT  189 (438)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHhhhccc-HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22222321        11111 1112222211 111123334544 4678888888777777777777766655442   


Q ss_pred             -----cCcchHHHHHHHHHHHHH
Q 022198          269 -----HGSWDDVFKVSVGLYLVG  286 (301)
Q Consensus       269 -----~~~~~~~f~~~~~~~~v~  286 (301)
                           +.||+..|.+.++..+++
T Consensus       190 ~~~~~~~gWr~~f~~~~~~~l~~  212 (438)
T PRK09952        190 DEQFLSWGWRIPFLFSIVLVLIA  212 (438)
T ss_pred             HHHhhccChHHHHHHHHHHHHHH
Confidence                 358999998776554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.59  E-value=8.8e-08  Score=86.90  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=109.2

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      +.+.+..+..=-|.+-.-+ .=.++.+|.+.++.|++.....+...+.+|++|+++||+-|+.+..         ++...
T Consensus        38 l~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~---------vG~~i  107 (493)
T KOG1330|consen   38 LCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA---------VGIFI  107 (493)
T ss_pred             HHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe---------eHHHH
Confidence            3444444433344443322 3467888999999999999999999999999999999997664322         22221


Q ss_pred             HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhccc-Cc
Q 022198          195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GS  271 (301)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~  271 (301)
                      ..+++...+.+..-+..+++ ...+.|-..+. +..-+...|..|+ +|+...++.|.+...|+++|-.....+.++ +.
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~-~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYS-PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhc-ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            22222111122111122222 11122222221 2223455677774 799999999999999999887777777777 44


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198          272 WDDVFKVSVGLYLVGTAVWNLFSTGE  297 (301)
Q Consensus       272 ~~~~f~~~~~~~~v~~~~~~~~~~~~  297 (301)
                      |+++|...+++.+++.++..++.+++
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCc
Confidence            99999998888888877776775443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.58  E-value=6.9e-06  Score=76.29  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=81.8

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh-hhh-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC-VLP-----WLTMAFSANLGGWIADTLVSKGLSVTTVRKIM  187 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~-~~~-----~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~  187 (301)
                      ..++..++..+-...+....| .++++++.+..+.+... ...     .+...++.++.|+++||+|||+.       .+
T Consensus        19 ~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-------l~   90 (434)
T PRK15075         19 RVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG-------LI   90 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH-------HH
Confidence            334444444444445555666 56667898887754332 211     22234788999999999998731       11


Q ss_pred             HHHhhHHHHHHHHHhhccCChHH--------HHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHh
Q 022198          188 QSIGFLGPAFFLTQLSHVDSPAM--------AVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGV  257 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~  257 (301)
                        .......+........++...        .+.. ...+.+.+.. .+.......|.. +++|+.+.++.+...+++..
T Consensus        91 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         91 --VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             --HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence              111111111111222222211        1111 1111111111 111223344554 57899999998888887777


Q ss_pred             HHHhHhhhhc--------ccCcchHHHHHHH
Q 022198          258 FGTAATGYIL--------QHGSWDDVFKVSV  280 (301)
Q Consensus       258 ~~~~l~g~l~--------~~~~~~~~f~~~~  280 (301)
                      +++.+.+.+.        ++.||+..|.+..
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            7777666552        4568999888643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=5.9e-06  Score=78.84  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=92.5

Q ss_pred             hhcChhHHHHHHHHHhhHHHHHH-HH--HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198          106 ILSKPPVWALIVSHFCHNWGTFI-LL--TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  182 (301)
Q Consensus       106 ll~~~~~~~~~~~~~~~~~~~~~-~~--~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~  182 (301)
                      -+++|++...+....+.....|. +.  .=..+++.++.|=+ .+..++.....++..++.++.|+++|.+|||-.    
T Consensus        36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~----  110 (599)
T PF06609_consen   36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF----  110 (599)
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH----
Confidence            35677777654433322222222 21  22335666777776 556666777778999999999999999997621    


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHH
Q 022198          183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT  260 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~  260 (301)
                           ...+.+...+-........+....+.-.++ +.+.+..  ........|..| |.|..+.++.....-.....+|
T Consensus       111 -----~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~  183 (599)
T PF06609_consen  111 -----FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISP  183 (599)
T ss_pred             -----HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccH
Confidence                 111111111111111122333333322221 2221111  111222345555 6787776655543333334566


Q ss_pred             hHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          261 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       261 ~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+...+..+.+|++.|++..+...++++...++
T Consensus       184 ~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  184 LIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            666556556789999988777777665554444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00898 2A0119 cation transport protein

Probab=98.50  E-value=1.2e-06  Score=82.85  Aligned_cols=145  Identities=10%  Similarity=0.012  Sum_probs=87.5

Q ss_pred             hHHHHHHHHhCCC---cchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          132 WMPTYYNQVLHFN---LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       132 wlp~~l~~~~g~s---~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      ..|+ +++++|++   ..+.++......++..++.++.|+++||+|||+.        +. ...+..++.........+.
T Consensus       111 ~~~~-i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~--------~~-~~~~~~~i~~~~~~~~~~~  180 (505)
T TIGR00898       111 FSST-IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV--------LL-LSTLVTAVSGVLTAFSPNY  180 (505)
T ss_pred             cccc-EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH--------HH-HHHHHHHHHHHHHHHcccH
Confidence            4444 45678998   8889999999999999999999999999997621        11 1122122221111223333


Q ss_pred             HHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198          209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  286 (301)
Q Consensus       209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~  286 (301)
                      ...+.+ ...+++.+.. .+.......|..| +.|+.+.++.+....+|..++|.+.+.+.+   |+..|.+.++..++.
T Consensus       181 ~~~~~~r~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~  256 (505)
T TIGR00898       181 TVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLF  256 (505)
T ss_pred             HHHHHHHHHHHhhccch-HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Confidence            222222 1122222211 1222334445554 678998888877777788888877655433   888888877666665


Q ss_pred             HHHH
Q 022198          287 TAVW  290 (301)
Q Consensus       287 ~~~~  290 (301)
                      .+.+
T Consensus       257 ~~~~  260 (505)
T TIGR00898       257 FLLS  260 (505)
T ss_pred             HHHH
Confidence            5444

>PRK09669 putative symporter YagG; Provisional

Probab=98.48  E-value=1.2e-06  Score=81.54  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198          123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL  173 (301)
Q Consensus       123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~  173 (301)
                      +.....+.+|++.|+.+++|+|+.++|.+..+.-+.-.+..++.|+++||.
T Consensus        22 ~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~   72 (444)
T PRK09669         22 NLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRT   72 (444)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecC
Confidence            444556678999999999999999999999999999999999999999994

>TIGR00788 fbt folate/biopterin transporter

Probab=98.48  E-value=5.8e-06  Score=77.66  Aligned_cols=174  Identities=17%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  193 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~  193 (301)
                      .....++++... +....-++.++++++|+|.++.+.+.....+...+ .++.|.++||+...+.+    ||..+.+..+
T Consensus        30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~r----Rr~~l~~~~~  103 (468)
T TIGR00788        30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYT----KRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcc----chHHHHHHHH
Confidence            344456676666 66778888999999999999998888877777776 45599999999521110    2222222222


Q ss_pred             HH-HHHHHHhhccCC-hHHHHHH-HHHHHhhhhh--hhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          194 GP-AFFLTQLSHVDS-PAMAVLC-MACSQGTDAF--SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       194 ~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      .. +..........+ ......+ ....++....  ..-..+....+..++..+...+.......+|..+++.+.|.+.+
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 222222222222 2122211 1111111110  11112221111111222333333344445788999999999999


Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          269 HGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       269 ~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.+|+..|.+.+++.++..+....+
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhc
Confidence            8889999988877777764443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.48  E-value=2.7e-06  Score=82.80  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc----------
Q 022198          135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH----------  204 (301)
Q Consensus       135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  204 (301)
                      +-+++++|++.+++|++.+...++..++.++.+++.||.+||++.....  .+..++.+..++.-.....          
T Consensus        57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~--ll~~lg~ll~alphf~~~~y~~~~~~~~~  134 (633)
T TIGR00805        57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC--AIMGLGSFLLSLPHFLSGRYSYSTTVSST  134 (633)
T ss_pred             hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH--HHHHHHHHHHhChHHhcCCcccccccccc
Confidence            4577889999999999999999999999999999999998775433321  1112222211111100000          


Q ss_pred             -------------c-----------------C--ChHHHHHHHH-HHHhhhhh-hhcchhhhhhccC-CCchHHHHHHHh
Q 022198          205 -------------V-----------------D--SPAMAVLCMA-CSQGTDAF-SQSGLYSNHQDIA-PRYSGVLLGLSN  249 (301)
Q Consensus       205 -------------~-----------------~--~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-p~~~g~a~g~~~  249 (301)
                                   .                 .  +....+.++. ...|++.. ..+...+...|.. ++.++...++.+
T Consensus       135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~  214 (633)
T TIGR00805       135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE  214 (633)
T ss_pred             ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence                         0                 0  1011111111 11222211 1111223444544 568999999999


Q ss_pred             HHHhhHHhHHHhHhhhhcccC----------------------cchHHHHHHHHHHHHHHHHHHhh
Q 022198          250 TAGVLAGVFGTAATGYILQHG----------------------SWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       250 ~~~~lgg~~~~~l~g~l~~~~----------------------~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ....+|..+|+.++|++.+..                      .|...|.+.+++.++..+.+..+
T Consensus       215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999987541                      25556777666666554444444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.46  E-value=2.2e-05  Score=74.45  Aligned_cols=138  Identities=14%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCC----hHHHHHH-HHH
Q 022198          143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS----PAMAVLC-MAC  217 (301)
Q Consensus       143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~  217 (301)
                      .+..+.+++.....++..++.++.|+++||+|||+....      ..+......+ .........    ....+.. ...
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~------~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~r~l~  125 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM------ELIIMIIATV-ASGLSPGSSPKSVMATLCFWRFWL  125 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH------HHHHHHHHHH-HHHHccCcccchHHHHHHHHHHHH
Confidence            445566788888899999999999999999997631100      0111111111 111111111    1111111 122


Q ss_pred             HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc-----------------------cCcch
Q 022198          218 SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ-----------------------HGSWD  273 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~-----------------------~~~~~  273 (301)
                      +++.+.. .+.......|..| +.|+.+.++.+....+|..+++.+...+..                       ..+|+
T Consensus       126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR  204 (502)
T TIGR00887       126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR  204 (502)
T ss_pred             HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence            2222221 1222334455554 789999999999999999888887765431                       13699


Q ss_pred             HHHHHHHHHHHHHHH
Q 022198          274 DVFKVSVGLYLVGTA  288 (301)
Q Consensus       274 ~~f~~~~~~~~v~~~  288 (301)
                      ..|.+.+...++..+
T Consensus       205 ~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       205 ILIGFGAVPALLALY  219 (502)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888766555555433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.41  E-value=3.9e-06  Score=78.36  Aligned_cols=151  Identities=17%  Similarity=0.209  Sum_probs=100.2

Q ss_pred             HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHh---hccCChHHHHHHH
Q 022198          139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL---SHVDSPAMAVLCM  215 (301)
Q Consensus       139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  215 (301)
                      .++++|.+|.+++......|..++.+.+|++.||+|.|+.        +. ...+..++.....   .......+++.=.
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v--------~~-~~~~~sa~~t~l~P~aa~~~~~~~~~~R~  136 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRV--------FF-ISGLISALLTLLTPLAASIGFYLLLVLRF  136 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHH--------HH-HHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            3688999999999999999999999999999999996632        11 1111122211111   1111111111111


Q ss_pred             HHHHhhhhhhhcchhh-hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          216 ACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       216 ~~~~~~~~~~~~~~~~-~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .-+++.+ ...+.... ..+-.+|++|+...++.....++|..++-.+.|++.+. .||+.+|.+.+++.++-.++|..+
T Consensus       137 lqGl~~g-~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  137 LQGLGQG-VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HhHHHHh-HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            1111111 11111111 12345678999999999999899999999999999999 999999999999988888888888


Q ss_pred             cCCccc
Q 022198          294 STGEKV  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      .+++++
T Consensus       216 ~~d~P~  221 (466)
T KOG2532|consen  216 YSDSPS  221 (466)
T ss_pred             hcCCcc
Confidence            666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.39  E-value=4.7e-06  Score=78.40  Aligned_cols=54  Identities=19%  Similarity=0.423  Sum_probs=46.7

Q ss_pred             HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198          120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL  173 (301)
Q Consensus       120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~  173 (301)
                      +..+.....+.+|++.|+++..|+|+...|.+..+.-+.-++..++.|+++||.
T Consensus        16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t   69 (473)
T PRK10429         16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNT   69 (473)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcC
Confidence            334555666788999999999999999999999998899999999999999954

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.33  E-value=5.1e-05  Score=68.58  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             hcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc--------ccCcchHHHHHHHHHHHHHHHHH
Q 022198          234 QDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL--------QHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       234 ~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~--------~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      .|. ++++|+...++.+....+|..+++.+.+.+.        +..+|+..|.+.+.+.+++....
T Consensus       122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  187 (394)
T TIGR00883       122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR  187 (394)
T ss_pred             hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            344 4568899999888888888888887765543        24578888887766665554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.31  E-value=2.1e-05  Score=69.64  Aligned_cols=146  Identities=18%  Similarity=0.252  Sum_probs=97.7

Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA  216 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (301)
                      +++++|+|.+.+|++..++.++..+.+++..+++.|+|..+       .......++......-.  ....+.+...-..
T Consensus        38 Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er-------~l~~~Llli~~G~~iR~--~~~~~~L~~gt~l  108 (395)
T COG2807          38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER-------SLFLALLLIAAGILIRS--LGGLPLLFLGTLL  108 (395)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH-------HHHHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence            56788999999999999999999999999999999998652       11111111111111111  1111111111111


Q ss_pred             HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHh
Q 022198          217 CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      .+.+....+. -+-+..++..||+.+..+|+..+.-+.++++++.+.-.+.++ +||+..+.+.+...+++.++|.-
T Consensus       109 ~G~gIav~nV-LLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         109 AGAGIAVINV-LLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             HHhhHHHHHH-hhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence            1222221111 112345677899999999999999999999999999888888 48999998888888888877743

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.29  E-value=2.8e-06  Score=78.75  Aligned_cols=166  Identities=14%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHH----HHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD----TLVSKGLSVTTVRKIMQSIGFLGPA  196 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D----r~~~r~~~~~~~~~~~~~~~~~~~~  196 (301)
                      ..+........|++.|+++..|+++...+.+.....+..++..|+.|+++|    |+|||+..       +. .+.+..+
T Consensus        12 ~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~-------~l-~g~i~~~   83 (428)
T PF13347_consen   12 GYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW-------IL-IGAILLA   83 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE-------ee-hhhHHHH
Confidence            334445556779999999999999999999999888999999999999999    67766322       11 1111111


Q ss_pred             HHH-HHh-h-c-cCCh---HHHHHHHHHHHhhh-hhhhcchhhhhhccCC--CchHHHHHHHhHHHhhHHhHHHhHhhhh
Q 022198          197 FFL-TQL-S-H-VDSP---AMAVLCMACSQGTD-AFSQSGLYSNHQDIAP--RYSGVLLGLSNTAGVLAGVFGTAATGYI  266 (301)
Q Consensus       197 ~~~-~~~-~-~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p--~~~g~a~g~~~~~~~lgg~~~~~l~g~l  266 (301)
                      +.. ..+ . . ..+.   ........+.+... .+...+..+...|..+  ++|....+..+....+|+.+...+.+.+
T Consensus        84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l  163 (428)
T PF13347_consen   84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL  163 (428)
T ss_pred             HHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence            111 111 1 1 1111   11111111111111 1111222334445443  5788888887777777776666666666


Q ss_pred             ccc-C------cchHHHHHHHHHHHHHHHHHHhhc
Q 022198          267 LQH-G------SWDDVFKVSVGLYLVGTAVWNLFS  294 (301)
Q Consensus       267 ~~~-~------~~~~~f~~~~~~~~v~~~~~~~~~  294 (301)
                      .+. +      +|.....+.+++.+++.++.....
T Consensus       164 ~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~  198 (428)
T PF13347_consen  164 VSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFV  198 (428)
T ss_pred             hhhhccCccchHHHHHHHHHHHHHHHHhhhhhhee
Confidence            644 1      466666666666666655544443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=4.2e-06  Score=74.83  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=93.2

Q ss_pred             hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 022198          141 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG  220 (301)
Q Consensus       141 ~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (301)
                      ++-+.++.|++.....+.+.+.+++.|.+.||+|+|-         .+.+++.........+...++- ..+...=...+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i---------pm~~Gl~vmf~sTilFafg~sy-~~l~vAR~LQg  170 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI---------PMVAGLFVMFLSTILFAFGNSY-PMLFVARSLQG  170 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhcccc---------HHHHHHHHHHHHHHHHHHcchh-HHHHHHHHHhh
Confidence            3445678899888888999999999999999999662         2223333222222222222222 11111111222


Q ss_pred             hh-hhhhcchhhhhhccCCC--chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH-HHHHhhcC
Q 022198          221 TD-AFSQSGLYSNHQDIAPR--YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT-AVWNLFST  295 (301)
Q Consensus       221 ~~-~~~~~~~~~~~~~~~p~--~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~-~~~~~~~~  295 (301)
                      .+ ++....-.+...+.+|+  +|+.+.|+.-++..+|-.+||..+|.+-|..|...-|.+++++.++-. +.+..++.
T Consensus       171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            22 22222223444566664  579999999999999999999999999999999999999887777643 44444443

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=6.1e-05  Score=70.62  Aligned_cols=163  Identities=12%  Similarity=0.002  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHH
Q 022198          123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQ  201 (301)
Q Consensus       123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~  201 (301)
                      +..+....+|++.|+.+..|+++..+|.+..+.-+-=++.-|+.|+++||...|-   .+.|.++.. +.+..++. ...
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~---Gr~rp~il~-g~i~~~i~~~ll   97 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRW---GKFRPWVLF-GALPFGIVCVLA   97 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCC---CCcchhHhH-HHHHHHHHHHHH
Confidence            4445556789999999999999999999999888889999999999999752210   011333322 21111111 111


Q ss_pred             h-hccCCh-HHHHHHHHH--HHhhh-hhhhcchhhhhhcc--CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-----
Q 022198          202 L-SHVDSP-AMAVLCMAC--SQGTD-AFSQSGLYSNHQDI--APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-----  269 (301)
Q Consensus       202 ~-~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~--~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-----  269 (301)
                      + ....+. ...+.....  .+... .+...+..+...|.  .+++|....++-...+.+|+.+++.+...+...     
T Consensus        98 f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~  177 (460)
T PRK11462         98 YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN  177 (460)
T ss_pred             HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            1 111111 111111111  11111 11112223333343  356898888988888888887777765544432     


Q ss_pred             --CcchHHHHHHHHHHHHHHHH
Q 022198          270 --GSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       270 --~~~~~~f~~~~~~~~v~~~~  289 (301)
                        .+|.....+.+++.+++.++
T Consensus       178 ~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        178 KPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence              24555444555554454433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.16  E-value=4.5e-06  Score=63.81  Aligned_cols=61  Identities=25%  Similarity=0.409  Sum_probs=54.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHH
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW   62 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~   62 (301)
                      |....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..|||+.|++.+.+.++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999999999999999999999877766554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.15  E-value=1.2e-05  Score=71.57  Aligned_cols=128  Identities=16%  Similarity=0.077  Sum_probs=82.7

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      ..-|.-.-..+..+-+...+|++-+.+.++..+.++..|.++||+|||.         ++...+++.++.....+.+.+-
T Consensus        51 ~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp---------vll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   51 MVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP---------VLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             hhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555556677888888889999999999999999999763         2223344444444444443332


Q ss_pred             HHHHHHHHH--HHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          209 AMAVLCMAC--SQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       209 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                         ..+.+.  ..|..-.+.+..-+...|+. +++|+.+++.++....+|-.+||.++|++..
T Consensus       122 ---~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 ---AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ---HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence               112221  11111112222334455664 4789999999999999999999999999987

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=3.6e-05  Score=71.77  Aligned_cols=252  Identities=16%  Similarity=0.136  Sum_probs=142.2

Q ss_pred             chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      .+.+++++....++|....|+.+.....+..+++.+++.+.+..|==.+|++..+..++.....+...||+-+ +++.++
T Consensus       132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~-~~~~~~  210 (463)
T KOG2816|consen  132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ-EKERSD  210 (463)
T ss_pred             hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC-cccccc
Confidence            4568899999999999999999999999999999999999999888899998666655543333334444322 111111


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHh--h-cChhHHHHHHHHHhhHHHHHHHHH-hHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLI--L-SKPPVWALIVSHFCHNWGTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLT  158 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l--l-~~~~~~~~~~~~~~~~~~~~~~~~-wlp~~l~~~~g~s~~~~~~~~~~~~i~  158 (301)
                      ++.... .............++..  . .+|..+.+....+.....-.+-.. -++.|+...+|++..+.+.+.....+.
T Consensus       211 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~  289 (463)
T KOG2816|consen  211 ATLREL-TPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSIL  289 (463)
T ss_pred             cccccc-CCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHH
Confidence            000000 00000000000111111  1 223344434333333322221111 335678888999999999888888888


Q ss_pred             HHHHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhhhh-c
Q 022198          159 MAFSANLGG-WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQ-D  235 (301)
Q Consensus       159 ~~~g~~~~G-~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~  235 (301)
                      ..++..+.. .+...++.|+         ....++..-.+....+.....++. ........+  ..+..+..-+... .
T Consensus       290 ~~i~~l~~~~~l~~~l~~~~---------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~--~~~~~pa~~s~~s~~  358 (463)
T KOG2816|consen  290 GIISQLLLLPLLSSILGEKR---------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL--AGIVFPAIRAFASIL  358 (463)
T ss_pred             HHHHHHHHHHHHHHHHhhhh---------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh--hcchhHHHHhHHHhh
Confidence            888888887 7777776552         222333222222222222222222 221221111  1122222222222 2


Q ss_pred             cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      ..++.+|.+.++...+..+.+.++|.+-+.+.
T Consensus       359 v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  359 VSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             cccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            35678899999999999999999998887764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.12  E-value=0.00016  Score=66.58  Aligned_cols=61  Identities=25%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      +...+++....+-....++|.|+++ .|+|..|+|.+++...+...+++++.|+++||..++
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~   67 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA   67 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            3334444444455567889999986 599999999999999999999999999999998643

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.07  E-value=2.4e-05  Score=54.20  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=48.7

Q ss_pred             HHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          119 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      +++...+...+..++|.|+++ .|+|+.++|.+..+..+...+++++.|+++||.+++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            344444555678899999986 699999999999999999999999999999999865

>PRK09848 glucuronide transporter; Provisional

Probab=98.03  E-value=0.00012  Score=68.17  Aligned_cols=56  Identities=18%  Similarity=0.348  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      ..+........+++.|+++..|+++.++|.+..+..+...+..++.|+++||.++|
T Consensus        19 ~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~   74 (448)
T PRK09848         19 ANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTR   74 (448)
T ss_pred             HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCC
Confidence            33445555667888899999999999999999999999999999999999997543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.02  E-value=6.6e-05  Score=71.02  Aligned_cols=145  Identities=12%  Similarity=0.051  Sum_probs=93.9

Q ss_pred             HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH
Q 022198          135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC  214 (301)
Q Consensus       135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (301)
                      ..++++++.+.++++++..+..-......++.+.+.||+|.|.        .+ .++.++.+..+.......+.....+.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~--------v~-i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT--------VM-IAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH--------HH-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3466788999999999988887788888999999999998662        22 22222222222222222333233333


Q ss_pred             HHH--HHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          215 MAC--SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       215 ~~~--~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ...  +.|++....+.. .......++.|+.+.|+......+|..+-|.+.-++.+..||+..+++.+.+.+-++..
T Consensus       141 ~gvi~G~G~~~~~~pai-viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~  216 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAV-VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVA  216 (509)
T ss_pred             HHHHhhccchhhhcchh-hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            222  222222112222 22234567899999999999888999999999999999999999888876666554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.97  E-value=3e-05  Score=72.08  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=47.7

Q ss_pred             hhhHhhcc--CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHH
Q 022198            5 NNILSKWV--PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF   63 (301)
Q Consensus         5 ~~~i~~~~--p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~   63 (301)
                      .+++.|..  .|++||...+.....-.+|.+++..++|.+.+..+.|..|.+.+++..+..
T Consensus       108 Da~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen  108 DALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             hHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            34555555  334489999999999999999999999999999999999998777765543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.95  E-value=0.00012  Score=69.62  Aligned_cols=139  Identities=16%  Similarity=0.100  Sum_probs=86.2

Q ss_pred             HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HH
Q 022198          139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-AC  217 (301)
Q Consensus       139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  217 (301)
                      +..+.+.....+...+..+|..+|+++.|.++||+|||..         ....+...+++-.....+.+....+.+= ..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~---------~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~  181 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV---------LLVSLLLFIIFGILTAFAPNYWMFLIFRFLS  181 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHH---------HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4556667777888888899999999999999999987621         1122222222222222333333322221 11


Q ss_pred             HHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198          218 SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +++.... ....+....|. .|++|+.+..+ ......++.+++...+++..  +|+..+++.....++..+.+
T Consensus       182 G~~~~~~-~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  182 GFFGSGP-LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLW  251 (521)
T ss_pred             Hhhccch-hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence            2211111 11122333454 57899999988 77778889999999999988  69998888777776665553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.0011  Score=59.92  Aligned_cols=128  Identities=14%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             hHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh---ccCCh
Q 022198          132 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS---HVDSP  208 (301)
Q Consensus       132 wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  208 (301)
                      -+-+.+++.+++|..|++++......+..+..+..|++.+|++.|+       ..+  +++...++....+.   ...+.
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~-------gi~--lgL~l~avg~~lF~pAa~~~~y  104 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA-------GIV--LGLLLYAVGAALFWPAASSKSY  104 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH-------HHH--HHHHHHHHHHHHHhhhhhhhhH
Confidence            3344577899999999999999999999999999999999999762       121  22222222211121   22222


Q ss_pred             HH-HHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          209 AM-AVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      .. +..+...+.|.+.. .+.......... |+....=.++.+.+..+|+.++|.+++++.++
T Consensus       105 ~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738         105 GFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            12 12122222222221 111112222333 33445556678888899999999999998883

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.93  E-value=0.00035  Score=68.10  Aligned_cols=160  Identities=14%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhh
Q 022198          125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLS  203 (301)
Q Consensus       125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~  203 (301)
                      .+|++..-+-.|+++.+|++.+++..+.....-...+..+++|+++|++-+|       ++.+....++... ..+..+.
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------FKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhc
Confidence            4677777777899988999988888877766666778889999999987543       1222111111111 1111111


Q ss_pred             cc---C-Ch--H-HHHHHHHHHHhhhhhhhcchhhhhhccC----CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---
Q 022198          204 HV---D-SP--A-MAVLCMACSQGTDAFSQSGLYSNHQDIA----PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---  269 (301)
Q Consensus       204 ~~---~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---  269 (301)
                      ..   . ..  . ..+.+..+..|.+.+ .+.+-+...+..    ++.+-....+....+++|+.+++.+.+++.++   
T Consensus        75 a~~~~~~~~~~~~~l~gLaLia~G~Ggi-Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        75 AIPSSGHPLHDLLDLLGLALIALGTGGI-KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             cCcccccchHHHHHHHHHHHHHhhcccc-ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            11   0 01  1 111111112222221 111111111211    22467788888999999999999999998744   


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHHh
Q 022198          270 ----GSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       270 ----~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                          .+|..+|.+.++..+++.+++..
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHH
Confidence                26889999988888888776644

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.0008  Score=62.87  Aligned_cols=156  Identities=15%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             HHhHHHHHHHHhCCCcchh------hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198          130 LTWMPTYYNQVLHFNLTES------GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  203 (301)
Q Consensus       130 ~~wlp~~l~~~~g~s~~~~------~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ..|.-.-+.++||.+.++.      +.......+|+.+|.++.++++||+|||+....  +    .+..+..++.....-
T Consensus        38 ~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~--~----~~l~~~~~~~~~~s~  111 (485)
T KOG0569|consen   38 KSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLL--S----NLLAVLAALLMGLSK  111 (485)
T ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH--H----HHHHHHHHHHHHHHH
Confidence            3566556677888665553      334566678999999999999999998732111  1    111112222211111


Q ss_pred             ccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh-hhhccc-CcchHHHHHH
Q 022198          204 HVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT-GYILQH-GSWDDVFKVS  279 (301)
Q Consensus       204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~-g~l~~~-~~~~~~f~~~  279 (301)
                      ......+++.- +..+...+ ......-.+..|..| +.||......+....+|-.++..++ -.++++ ..|...+.+-
T Consensus       112 ~~~~~e~li~GR~i~Gl~~g-l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  112 SAPSFEMLILGRLIVGLACG-LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HhhhHHHHHHHHHHHHHHhH-HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            11222222211 11111111 111111123457777 5799988888888777777775544 345555 4588777766


Q ss_pred             HHHHHHHHHHHHh
Q 022198          280 VGLYLVGTAVWNL  292 (301)
Q Consensus       280 ~~~~~v~~~~~~~  292 (301)
                      .+..++..+.+..
T Consensus       191 ~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  191 LIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHhc
Confidence            6666655544433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.90  E-value=0.00046  Score=59.05  Aligned_cols=139  Identities=13%  Similarity=0.183  Sum_probs=78.9

Q ss_pred             HHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198          124 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  203 (301)
Q Consensus       124 ~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ...|.+..|-|. +++++|+|.+|...+.....++..+| +..|.+.||++.|......  ......+..  .+......
T Consensus        16 Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG--~~~~~~GY~--~~~l~~~~   89 (250)
T PF06813_consen   16 GTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIG--AVLGFVGYG--LLWLAVSG   89 (250)
T ss_pred             CcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHH--HHHHHHHHH--HHHHHHhC
Confidence            357778888876 66789999999999998888888875 8889999999865211110  011111111  11111111


Q ss_pred             ccC-ChHHHHHHHHHHHh-hh-hhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          204 HVD-SPAMAVLCMACSQG-TD-AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       204 ~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      ... .+.+. +++....+ .+ .+..+.......+..|++||.+.|+.-....+++++-..+--.+.+.
T Consensus        90 ~i~~~~~~~-~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   90 RIPSLPVWL-MCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             ccCccchHH-HHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            112 23332 23222221 22 11112212222234688999999998888877777766665555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.82  E-value=0.00078  Score=62.27  Aligned_cols=162  Identities=13%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHH---HHhhhcc-CCCCCC--CCCCHHHHH
Q 022198           13 PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT---VWLSKAH-SSPAED--PQLRPAEKK   86 (301)
Q Consensus        13 p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~---~~~~~~~-~~p~~~--~~~~~~~~~   86 (301)
                      ++++..+..+.+---=.+--++||.+.+.+....|.+..-.+.+...++-..   .++.+.+ +.|+-.  ++.++++..
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~  222 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS  222 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence            4555566666666666677888999999998888888777766655443321   1222221 222210  000000000


Q ss_pred             HHHh--ccCCCCC-----------CCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198           87 LIVS--SCASKEP-----------VKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV  153 (301)
Q Consensus        87 ~~~~--~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~  153 (301)
                      ....  +..++.+           ....+|++-+++|-++......++. ....++..-+-+|+.++ |+|+...|.+-.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~  300 (432)
T PF06963_consen  223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRG  300 (432)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHH
Confidence            0000  0000000           0012466667777666544433332 22344456677899866 999999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHc
Q 022198          154 LPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       154 ~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      ...+.+..|+.+..++.+|+|-.
T Consensus       301 ~gav~Gl~gT~~~p~l~~riGlv  323 (432)
T PF06963_consen  301 LGAVFGLLGTWVYPWLMKRIGLV  323 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcch
Confidence            88899999999999999999843

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0025  Score=59.03  Aligned_cols=58  Identities=24%  Similarity=0.543  Sum_probs=48.5

Q ss_pred             CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHH
Q 022198            2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT   60 (301)
Q Consensus         2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~   60 (301)
                      |+.-++++|.+|+++  |-...++++.+.++|+.++|.+.+++.+.+||+..|.+. .++.
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a-avGm  195 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA-AVGM  195 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH-HHHH
Confidence            566788899996543  577888899999999999999999999999999999974 4443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.0014  Score=60.78  Aligned_cols=175  Identities=13%  Similarity=0.102  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198          121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  200 (301)
Q Consensus       121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~  200 (301)
                      ..+..+-....|+.-|+.+..|+|+..+|.+..+.=+.=++.-|+-|.++||..+|   .-+.|.++.........++..
T Consensus        23 ~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r---~GrfRP~lL~g~ip~~i~~~l   99 (467)
T COG2211          23 ASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSR---WGRFRPWLLWGAIPFAIVAVL   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccc---cccccHHHHHHhHHHHHHHHH
Confidence            34455556778999999999999999999998888888899999999999975322   112233433221211112222


Q ss_pred             Hhhcc----CCh--HHHHHHHHHHHhhhhhhhcchhhhhhc--cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---
Q 022198          201 QLSHV----DSP--AMAVLCMACSQGTDAFSQSGLYSNHQD--IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---  269 (301)
Q Consensus       201 ~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---  269 (301)
                      .+...    ...  +..+..+....+-...+ -+..+...+  ..|++|....++-..+..+|+.+...+.+.+...   
T Consensus       100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vn-iPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211         100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVN-IPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             HHcCCCcccCcchHHHHHHHHHHHHHHHhee-CchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22111    111  12222222221111111 111222223  3467888877777777777767666666665543   


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 022198          270 ----GSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV  300 (301)
Q Consensus       270 ----~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~  300 (301)
                          .||.....+.+++.. ..+.++...++||..
T Consensus       179 ~~~~~g~~~~~~~~~vi~~-i~~l~~~~~v~ER~~  212 (467)
T COG2211         179 GDKALGYQGTALVLGVIGV-ILLLFCFFNVKERVV  212 (467)
T ss_pred             CcchhhHHHHHHHHHHHHH-HHHHHHHHHhhcccC
Confidence                234333333332222 245556778888865

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.38  E-value=0.0054  Score=58.38  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhh
Q 022198          147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFS  225 (301)
Q Consensus       147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  225 (301)
                      +.+++.....++..+|.++.|+++|++|||....      +..+.+....+..   ....+....... ...+++.+...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~------~~~~~~~iG~ii~---~~a~~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL------LAVVLFLIGAIII---ALAPSWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHHHHH---HHhhhHHHHHHHHHHhccchhhhh
Confidence            3478888899999999999999999999873111      1111111111111   112233222221 22233333222


Q ss_pred             hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccC--cchHHHHHHHHHHHHHHHH
Q 022198          226 QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       226 ~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~--~~~~~f~~~~~~~~v~~~~  289 (301)
                      .. .-.+..|..| +.||...+..+....+|-.++ .+.|+..++.  +|+..+.+..+..++-.+.
T Consensus       161 ~~-~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  161 VL-APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             hc-chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            11 1123456666 589998888777776555555 6666666653  7997776655555544444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.36  E-value=0.0029  Score=58.88  Aligned_cols=150  Identities=23%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH---HHHHHhhcc-CChHH
Q 022198          135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA---FFLTQLSHV-DSPAM  210 (301)
Q Consensus       135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~  210 (301)
                      .|+++++|+|+++...+.....+-. ...++.|.++|-+--++.+    ||..+.++.+..+   ..+...... .+...
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            4788999999999888776554433 4678899999976311110    3333333332221   112211121 11222


Q ss_pred             HHHHHH-HHHhhhh--hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198          211 AVLCMA-CSQGTDA--FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       211 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      ...++. ..++...  ...-+.+.......|+.+|...+.......+|+.++..+.|.+.++.+.+..|.+.+.+.++..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            222211 1111110  0111122222223344577777788888889999999999999999888888887766666554


Q ss_pred             HH
Q 022198          288 AV  289 (301)
Q Consensus       288 ~~  289 (301)
                      +.
T Consensus       169 ~~  170 (433)
T PF03092_consen  169 IV  170 (433)
T ss_pred             HH
Confidence            33

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.33  E-value=0.0098  Score=55.66  Aligned_cols=126  Identities=21%  Similarity=0.146  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  235 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
                      ++...+.++.-|.++||+|||....      +.....+.+.+......     ++...... ..+......+..++...|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~------~~~~~~~l~~~~~~~~~-----~~~~~~~~-l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLL------LPLFGTILPALCLLFQG-----YWFFLLLG-LSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHH------HHHHHHHHhHHHHHHHH-----HHHhhhcc-cccchhhhhhhhhhheee
Confidence            4567788899999999999874221      11222333332222111     12211111 111111112334455556


Q ss_pred             cCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          236 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       236 ~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ... +.|....|+.+..-..++.++|.+.+.+....|...+|.+..+..++..+-...+
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~  198 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF  198 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence            544 5799999999998889999999999999999899999998887777765554444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.24  E-value=0.097  Score=48.03  Aligned_cols=169  Identities=11%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--CchhHHhhhhhHHHHHHHHhhhccCCCCC---CCC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQ   79 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--WR~~F~~~g~l~~~~~~~~~~~~~~~p~~---~~~   79 (301)
                      ++++-...|+++--|+.+...++..+|-.++..+|-.+....+  -+.++++ .......+.++..++|..++.   ++.
T Consensus       115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i-sl~~~~~a~~~~~fLP~~~~S~~f~r~  193 (412)
T PF01770_consen  115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI-SLASVSLALLIALFLPMPKRSLFFHRK  193 (412)
T ss_pred             HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHcCCCCcccceecc
Confidence            4677788899999999999999999999999888887766332  2333333 222222222332333432221   111


Q ss_pred             CCH------HHHHHH---Hhcc--CCCCCCC-C-----------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHH
Q 022198           80 LRP------AEKKLI---VSSC--ASKEPVK-T-----------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  136 (301)
Q Consensus        80 ~~~------~~~~~~---~~~~--~~~~~~~-~-----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~  136 (301)
                      .++      .+.+..   .++.  ..+++.. +           .++++..++|.++.-.+-..+...+++-+.+|.-..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~L  273 (412)
T PF01770_consen  194 PPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSL  273 (412)
T ss_pred             CccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            000      000000   0000  0000000 0           023445677765543333334455777788888777


Q ss_pred             HHHH--hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198          137 YNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  174 (301)
Q Consensus       137 l~~~--~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~  174 (301)
                      ..+.  .+-+..-=|.+-+...+.+.++.+..|++..++.
T Consensus       274 W~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  274 WDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             HHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            7654  1222333455556666777888888888855554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.21  E-value=0.0042  Score=57.92  Aligned_cols=143  Identities=15%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh------cCCch-------hHHhhhhhHHHHHHHHhhhcc
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------FGWPS-------VFYSFGSLGTVWFTVWLSKAH   71 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~------~gWR~-------~F~~~g~l~~~~~~~~~~~~~   71 (301)
                      -+|+++..-.++|.|+++....+..+|..+||.++..+...      +.+..       +=|+..++.++..+......+
T Consensus       151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence            36788888889999999999999999999998887666542      12211       113333333332222222344


Q ss_pred             CCCCCCCCC--CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198           72 SSPAEDPQL--RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG  149 (301)
Q Consensus        72 ~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~  149 (301)
                      |.+++..+-  +++|+.   +.+.++.+..+.+|.      ..+..+...+..+......-+-.+.+....++++-+++-
T Consensus       231 E~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~------~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av  301 (488)
T KOG2325|consen  231 EVYRGIIDKKKRSVEEE---KSDIEKVKKPKLDWV------AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAV  301 (488)
T ss_pred             ecccCccccccccchhh---ccchhhhccCChhHH------HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHH
Confidence            544322111  111000   000000011122232      222333444445555555566677777788899988877


Q ss_pred             hHhhhhH
Q 022198          150 LFCVLPW  156 (301)
Q Consensus       150 ~~~~~~~  156 (301)
                      .+.....
T Consensus       302 ~~~gi~~  308 (488)
T KOG2325|consen  302 LYNGITL  308 (488)
T ss_pred             HhhhhHH
Confidence            7665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.18  E-value=0.042  Score=51.78  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=36.3

Q ss_pred             HHHHHHHhHHHhhHHhHHHhHhhhhc-ccC-------cchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198          242 GVLLGLSNTAGVLAGVFGTAATGYIL-QHG-------SWDDVFKVSVGLYLVGTAVWNLFSTGE  297 (301)
Q Consensus       242 g~a~g~~~~~~~lgg~~~~~l~g~l~-~~~-------~~~~~f~~~~~~~~v~~~~~~~~~~~~  297 (301)
                      +..++.....|++|+.+.-.+.-.+. ...       ..+.++.+.++..++..+.+.++.++.
T Consensus       187 ~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~  250 (477)
T PF11700_consen  187 GRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDR  250 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77888888888888887765543332 221       235677777777777777766664333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.16  E-value=0.024  Score=50.36  Aligned_cols=274  Identities=11%  Similarity=0.113  Sum_probs=125.9

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhH--HhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF--YSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F--~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      ++++-+-.+|+++-|+.|.--+..-.|-..|..++-.++..-.|-.--  .+ ..-...+..++-.++|. |++....++
T Consensus       116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~-v~rSl~f~~  193 (433)
T KOG3810|consen  116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPR-VKRSLYFHR  193 (433)
T ss_pred             hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCC-Cchhhhhhc
Confidence            466777889999999999999998888888888888777654333222  11 11111212222233343 322111111


Q ss_pred             HHHHHHHhccCCCCCC-CC------------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198           83 AEKKLIVSSCASKEPV-KT------------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG  149 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~~------------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~  149 (301)
                      .+.+....+.++.++. +.            .++.+..+||++..=.+-..+...++|-..+|.-....+. .  +....
T Consensus       194 ~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~-~--~~~~~  270 (433)
T KOG3810|consen  194 LEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV-A--PNPAN  270 (433)
T ss_pred             ccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh-C--CCchh
Confidence            1111101110000000 00            1234455777644322222344568888888888877755 2  22222


Q ss_pred             hH----hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhh
Q 022198          150 LF----CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS  225 (301)
Q Consensus       150 ~~----~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (301)
                      -+    =++..+.++++.++.|++.-++-|+       +..++.++.+.-+-.+.....+.+.++.-+.....-..-.+.
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~  343 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLT  343 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhh
Confidence            22    2333445666777777776554332       223333333322222222233333322111111100000111


Q ss_pred             hc-chhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-----------chHHHHHHHHHHHHHHHHHHhh
Q 022198          226 QS-GLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-----------WDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       226 ~~-~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-----------~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+ .......+...+.-|...|++...+-+   +=..+.-.++|.-|           +..-|.+.+++++++.....+.
T Consensus       344 itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  344 ITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            11 011122334455567777875554432   22333334556422           3345677788888875543333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.003  Score=59.56  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=90.3

Q ss_pred             HHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH
Q 022198          138 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  217 (301)
Q Consensus       138 ~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (301)
                      +++.++...+-+....+..++..++.+.++.+.||+.-        .+.+....+....+........+-+..+..=...
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l--------s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ll  144 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL--------SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLL  144 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            36777888888888899999999999999999999861        2223222222222221111111112222111111


Q ss_pred             HHhhhhhhhcchhhhhh-ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc------cCcchHHHHHHHHHHHHHHHHH
Q 022198          218 SQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ------HGSWDDVFKVSVGLYLVGTAVW  290 (301)
Q Consensus       218 ~~~~~~~~~~~~~~~~~-~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~------~~~~~~~f~~~~~~~~v~~~~~  290 (301)
                      +. +.....+....... -..++++|.-.|+-++..++|+++|..+...+.+      ..||++.|.+-+++.++..++.
T Consensus       145 Gl-~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  145 GL-FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             HH-HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence            11 11111222222222 3446789999999999999999999988877543      2689999999887777666554


Q ss_pred             HhhcCCc
Q 022198          291 NLFSTGE  297 (301)
Q Consensus       291 ~~~~~~~  297 (301)
                      .++-.+.
T Consensus       224 f~~lp~~  230 (495)
T KOG2533|consen  224 FFFLPDN  230 (495)
T ss_pred             EEEecCC
Confidence            4443333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.11  E-value=0.046  Score=51.27  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=88.0

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------hcCCc----hhHHhhhhhHHHHHHHHhhhccC
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------RFGWP----SVFYSFGSLGTVWFTVWLSKAHS   72 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------~~gWR----~~F~~~g~l~~~~~~~~~~~~~~   72 (301)
                      +.+++|.++.+|-.|-.++++.+.++|.++++.+..++.+        .-.|.    ..+.+.++.+++......+..++
T Consensus       151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~  230 (472)
T TIGR00769       151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRN  230 (472)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999988888763        12352    34444444443322222221111


Q ss_pred             CCCCCCCCCHHHHHHHHhccCCCCCCC--CCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchh-
Q 022198           73 SPAEDPQLRPAEKKLIVSSCASKEPVK--TIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTES-  148 (301)
Q Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~-  148 (301)
                       ...+|+..++++    ++ +++++..  ...++.++|+|+++...+...+.+.....+ ..|- ..+.+.+ -|+.+- 
T Consensus       231 -~~~~~~~~~~~~----~~-~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k-~~v~~~~-p~~~~~~  302 (472)
T TIGR00769       231 -VLTDPRSYNPAL----KE-KKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWK-SKLKAQY-PSPNEYS  302 (472)
T ss_pred             -ccCCccccchhh----cc-ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CCHHHHH
Confidence             111122111111    00 1111111  124677899999887665554443332222 3444 3344443 344332 


Q ss_pred             ---hhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          149 ---GLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       149 ---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                         +.+....++...+..++++++.+|+|-+
T Consensus       303 ~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       303 AFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               2233333444445566668888887744

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.10  E-value=0.019  Score=49.00  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             chhHHHHHHHHhhhhhhHHHHhhhHHHH---hh--hcCCchhHHhhhhhHHHHHHHHhhhccC-CCCCCCCCCHHHHHHH
Q 022198           15 AERSRSLALVYSGMYLGSVTGLAFSPFL---IH--RFGWPSVFYSFGSLGTVWFTVWLSKAHS-SPAEDPQLRPAEKKLI   88 (301)
Q Consensus        15 ~~rg~a~~~~~~g~~lG~~~g~~l~~~l---~~--~~gWR~~F~~~g~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~   88 (301)
                      |+|+....+-.-+.++|.++....--.-   .+  .-.|++++-+.+++..+-.+++...-.| ++..+ + +++|+.  
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~-~-~k~~k~--   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSP-K-EKQEKE--   77 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc-c-cccccc--
Confidence            6677777777778888887765331111   11  1249999998888775554444443111 11111 1 111110  


Q ss_pred             HhccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198           89 VSSCASKEPVKTIPWGLILSKPPVWALIVSHF  120 (301)
Q Consensus        89 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  120 (301)
                           +....++....+.+|++..|.-.+.+.
T Consensus        78 -----~~~~~~~~s~~~~LK~K~tw~w~~~Yg  104 (267)
T PF07672_consen   78 -----NSTLSKKPSYKSILKEKETWKWILIYG  104 (267)
T ss_pred             -----cccccccchHHHHHccchHHHHHHHHH
Confidence                 000111235678999999998655543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.87  E-value=0.12  Score=46.39  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                      +++|++..+++.+.........+...+.|.++||+|||
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk   99 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK   99 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            47899999999988888888889999999999999977

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.61  E-value=0.044  Score=50.38  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             HHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHH
Q 022198          134 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAV  212 (301)
Q Consensus       134 p~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  212 (301)
                      -.|.++.|| |.+.+.+...+..+..+...+.+-|+.||+|-|....  ...+...   ++..+-+..... .++...--
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l--lgt~ln~---iGa~Ir~iss~p~v~~~f~~~  141 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL--LGTVLNG---IGAWIRLISSLPFVPPLFRRP  141 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH--HHHHHHH---HHHHHhhhccCccccccchhh
Confidence            356777778 6677778888888899999999999999998652110  0111111   111111111111 11111111


Q ss_pred             HHHHHHHhhhhhhhcchhh-----hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          213 LCMACSQGTDAFSQSGLYS-----NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      ++ ..+....+.+++-+..     ...-.+|++|++|..+..+...+|.+++-.+...++.+
T Consensus       142 l~-~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  142 LT-HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hh-HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            11 1122222222221111     11235678898888887777778888776666666554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.58  E-value=0.046  Score=48.94  Aligned_cols=145  Identities=16%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             cCcchhHHHHHHHH-hhhhhhHHHHhhhHHHHhhhcCC--chhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHH
Q 022198           12 VPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI   88 (301)
Q Consensus        12 ~p~~~rg~a~~~~~-~g~~lG~~~g~~l~~~l~~~~gW--R~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   88 (301)
                      +|++..+.-.+... .+..+-.+.+..++.++++..|-  ..+|....++.++..++.....+|...+..+.++..++. 
T Consensus       155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~-  233 (354)
T PF05631_consen  155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSF-  233 (354)
T ss_pred             CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHH-
Confidence            34444444433333 23333345566677777777765  788887444433332233223344332211100000000 


Q ss_pred             HhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHH
Q 022198           89 VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGG  167 (301)
Q Consensus        89 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G  167 (301)
                                 +..++.+++||+.+.+-+...+....+|.+ ..|.|+.-.++  - .-.-|++..-..++..+|+-+..
T Consensus       234 -----------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~--~-~~P~GlIFssFM~a~MlGS~lf~  299 (354)
T PF05631_consen  234 -----------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDD--E-ELPLGLIFSSFMVAMMLGSSLFS  299 (354)
T ss_pred             -----------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCC--C-CCCchHHHHHHHHHHHHHHHHHH
Confidence                       112456788899988777666666666665 68999866222  1 22356666555566666766665


Q ss_pred             HHHH
Q 022198          168 WIAD  171 (301)
Q Consensus       168 ~l~D  171 (301)
                      ++..
T Consensus       300 ~l~s  303 (354)
T PF05631_consen  300 RLLS  303 (354)
T ss_pred             HHHh
Confidence            5444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.51  E-value=0.53  Score=43.76  Aligned_cols=176  Identities=15%  Similarity=0.171  Sum_probs=94.9

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS  189 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~  189 (301)
                      +..+.++..+++.+++-=..-+-.|.|+.+.+.-|.--.+.+.....+...+..+..|...||..|.+  ..+......-
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~--~~~~~l~~Qn   79 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLK--VIRTSLVVQN   79 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchh--hHHHHHHHHH
Confidence            34567888899888887777777889999887767666666666666777777888888889875432  1111111222


Q ss_pred             HhhHHHHH-HHHHhhccCC----hHHHHHHHHH--HHh-hhh-hhhcchhhhhh-------ccCCCchHHHHHHHhHHHh
Q 022198          190 IGFLGPAF-FLTQLSHVDS----PAMAVLCMAC--SQG-TDA-FSQSGLYSNHQ-------DIAPRYSGVLLGLSNTAGV  253 (301)
Q Consensus       190 ~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~--~~~-~~~-~~~~~~~~~~~-------~~~p~~~g~a~g~~~~~~~  253 (301)
                      .....++. +...+.....    ......+...  ..+ ..- .+.....+...       +-.++.....++.+.-+=.
T Consensus        80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL  159 (432)
T PF06963_consen   80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL  159 (432)
T ss_pred             HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence            22222222 2222222111    1111111111  111 111 11111111111       1123334444444444445


Q ss_pred             hHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198          254 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       254 lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~  287 (301)
                      +.-.++|.++|.+.+..|......+.++..++..
T Consensus       160 ~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  160 FCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence            6788999999999998777766666666666554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.012  Score=54.17  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198          143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  177 (301)
Q Consensus       143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~  177 (301)
                      ++....+.......++-.+|.++.||+.||+|||+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            45566777778888999999999999999999873

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.44  E-value=0.033  Score=52.08  Aligned_cols=64  Identities=19%  Similarity=0.077  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhHHHHHHH-HhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198          111 PVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  174 (301)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~-~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~  174 (301)
                      ..|...+..+.....+..+..=+=+|+++ +++-+.+..|+..+...++..+++++.|+-+.|.+
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~   99 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG   99 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC
Confidence            34444444444333222222223357764 35777888999999999999999999999999876

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.38  E-value=0.097  Score=47.70  Aligned_cols=136  Identities=14%  Similarity=0.054  Sum_probs=76.2

Q ss_pred             HHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH-----HcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-----c
Q 022198          136 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-----SKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-----V  205 (301)
Q Consensus       136 ~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  205 (301)
                      .+..|+++...-.+.+..+..+.+ ...+..|+.||+..     ||..-++. .......+.............     .
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~-G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWG-GTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHH-HHHHHHHHHHHHHHHHHHHcccccccc
Confidence            345677888777777776665444 46899999999986     44332221 111222222222222222222     0


Q ss_pred             CChHHH-----HHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198          206 DSPAMA-----VLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD  274 (301)
Q Consensus       206 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~  274 (301)
                      .+....     +.+...+.+.. .+++...+...|.. |++|+.+.++....--+|-.++..+.|.++|.++-..
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~-~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r  156 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVH-ASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER  156 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHh-HhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            112111     11222222222 22344455556665 4688999999888877888999999999999865443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.36  E-value=0.085  Score=47.61  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198          129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  208 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (301)
                      +...+-.-+++.-|.+..+..++..-...++.+++...|.++||+|||..        .. ..+.+....-.....+.+.
T Consensus        96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~--------f~-~T~l~t~v~~~is~~spnf  166 (528)
T KOG0253|consen   96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKG--------FN-LTFLVTGVFGVISGASPNF  166 (528)
T ss_pred             HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchh--------hh-hhHHHHHHHHHhhcCCCCe
Confidence            34445556777778888888888888889999999999999999998732        11 1111111111111222222


Q ss_pred             HHHHHHH-HHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198          209 AMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG  286 (301)
Q Consensus       209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~  286 (301)
                      ..+..+- ..+++++..  +...+...|.-|. +++.-+ ++.....+|..+...+.=.+..+.||++-.........+.
T Consensus       167 ~~L~~f~~l~~~g~gg~--pv~~~~yle~lp~~~r~~~~-V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~  243 (528)
T KOG0253|consen  167 ASLCVFRALWGFGVGGL--PVDSAIYLEFLPSSHRWLLT-VMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA  243 (528)
T ss_pred             ehhhHHHHHHhccCCCc--cHhHHHHHHhccCcCCCcch-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence            2222222 223444432  2222222344443 333322 2224455555555555444455678987766665444443


Q ss_pred             HHHHHhhcCCccc
Q 022198          287 TAVWNLFSTGEKV  299 (301)
Q Consensus       287 ~~~~~~~~~~~~~  299 (301)
                       +.+..+..+.+.
T Consensus       244 -a~f~~w~~ESpR  255 (528)
T KOG0253|consen  244 -ARFLVWVYESPR  255 (528)
T ss_pred             -HHHHhhcccCcc
Confidence             444555544443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.02  E-value=0.06  Score=37.80  Aligned_cols=50  Identities=16%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198          123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL  173 (301)
Q Consensus       123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~  173 (301)
                      ..+.+.+..-+|. ++++.++|.++.+++.....++..+|.+...++.++.
T Consensus         5 GigRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~   54 (85)
T PF06779_consen    5 GIGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS   54 (85)
T ss_pred             hhHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3466777777766 5567899999999999999999999999999888864

Note that many members are hypothetical proteins.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.02  E-value=1.4  Score=41.66  Aligned_cols=165  Identities=15%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------hcCCchhHH----hhhhhHHHHHHHHhhhcc
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFY----SFGSLGTVWFTVWLSKAH   71 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------~~gWR~~F~----~~g~l~~~~~~~~~~~~~   71 (301)
                      +.+.+|.++.+|-.|.-++++.+.++|.+++..+...+.+         .-.|...+.    +....+++..... +...
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~-~~~~  244 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLY-RYMN  244 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            4577899999999999999999999999999988888877         234764442    2222232221111 1111


Q ss_pred             CCCCCCCCCCHHHHHHHHhccCCCCC-CCCCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcch-h
Q 022198           72 SSPAEDPQLRPAEKKLIVSSCASKEP-VKTIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTE-S  148 (301)
Q Consensus        72 ~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~-~  148 (301)
                      +...++++..++++    +++.++++ .-...++.++|+|++....+...+......-+ ..|- ..+++.+ -|+.+ +
T Consensus       245 ~~vl~~~~~~~~~~----~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK-~~lk~~~-~~~~~ys  318 (491)
T PF03219_consen  245 KNVLTDPRFYPSAK----KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWK-SQLKQLY-PDPNDYS  318 (491)
T ss_pred             HHccCccccchhhh----cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CCchHHH
Confidence            11111111111100    00001111 11124566889999887666554443333222 2444 3344433 34433 2


Q ss_pred             ---hhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198          149 ---GLFCVLPWLTMAFSANLGGWIADTLVSK  176 (301)
Q Consensus       149 ---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r  176 (301)
                         |.+....++...+-.++++.+.+|+|.+
T Consensus       319 afmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  319 AFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               2233344444555556667777776644

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.01  E-value=0.98  Score=43.17  Aligned_cols=41  Identities=17%  Similarity=0.081  Sum_probs=31.2

Q ss_pred             HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH
Q 022198          131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT  172 (301)
Q Consensus       131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr  172 (301)
                      .|. .++...+|-+..+.+.+...+..+..+|+.+++++.++
T Consensus        36 ~~~-r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         36 LLG-TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHH-HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            444 45666778888888888888888888888888877643

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.97  E-value=0.091  Score=49.50  Aligned_cols=174  Identities=13%  Similarity=0.050  Sum_probs=89.3

Q ss_pred             HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198          105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR  184 (301)
Q Consensus       105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~  184 (301)
                      +++.++.....++.......+.-.+.+++==++ +++|-.+.--|.....-..+=.+.-++.+++..|+|+-+..     
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-----  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-----  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence            456666655444433333334434455553334 45665555555443333344556667788889888854311     


Q ss_pred             HHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHH-hhHHhHHHh
Q 022198          185 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAG-VLAGVFGTA  261 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~-~lgg~~~~~  261 (301)
                          ..++.+-..=+.......+|+..+-.-. -+.....+- ....++. +..+|+.++++.++....- .+|-.+|..
T Consensus       440 ----~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW-aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl  514 (618)
T KOG3762|consen  440 ----YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW-AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL  514 (618)
T ss_pred             ----eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH-HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence                1122111111122233445543321111 111111111 1112232 3346778888888765443 256779999


Q ss_pred             HhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198          262 ATGYILQHGSWDDVFKVSVGLYLVGTAV  289 (301)
Q Consensus       262 l~g~l~~~~~~~~~f~~~~~~~~v~~~~  289 (301)
                      ++|.+.++.+-+..|...++..++.++.
T Consensus       515 IGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  515 IGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             hhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            9999999988888887765555544433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.92  E-value=0.00026  Score=65.89  Aligned_cols=130  Identities=15%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC---ChHHHHHH-HHHHHhhhh
Q 022198          148 SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLC-MACSQGTDA  223 (301)
Q Consensus       148 ~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~  223 (301)
                      .++......++..+|.+++|+++||+|||.....       .  .....+.........   +....... ...+++.+.
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~-------~--~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALII-------S--ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccc-------c--cccccccccccccccccccccccccccccccccccc
Confidence            4667777889999999999999999998843211       1  111111111111112   22222111 112222221


Q ss_pred             hhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHH
Q 022198          224 FSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       224 ~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~  287 (301)
                      . ......+..|.. ++.|+....+.+....+|..++..+.-.+.+.   .+|+..+.+..+..++..
T Consensus       119 ~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~  185 (451)
T PF00083_consen  119 A-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL  185 (451)
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1 111223345654 46888888877776666655555443222221   348877766655554433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.78  E-value=0.51  Score=43.33  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=35.5

Q ss_pred             hhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCC--chhHHhhhhhHHHHH
Q 022198            9 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWF   63 (301)
Q Consensus         9 ~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gW--R~~F~~~g~l~~~~~   63 (301)
                      ++.+|+    ..++-+.+|...|.++|...-..+.. .|+  |..+.....++++..
T Consensus       137 t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~  188 (402)
T PF02487_consen  137 THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFL  188 (402)
T ss_pred             HHhcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHH
Confidence            345554    46788888888888888877666666 777  667877777775543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.59  E-value=1.1  Score=37.95  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             HHHhHHHHHHHHhCCCc--chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hHHHHHHHHHhhcc
Q 022198          129 LLTWMPTYYNQVLHFNL--TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG-FLGPAFFLTQLSHV  205 (301)
Q Consensus       129 ~~~wlp~~l~~~~g~s~--~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  205 (301)
                      .....|.+.. +.+.+.  ...++......+...++.++.|+++||+|||+       ....... .....+ ...+...
T Consensus        21 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~-~~~~~~~   91 (338)
T COG0477          21 LSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-------VLIIGLLLFLLGTL-LLALAPN   91 (338)
T ss_pred             HHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-------HHHHHHHHHHHHHH-HHHhCcc
Confidence            3345555554 445554  46778778888888888899999999997651       1111111 111111 1111111


Q ss_pred             CChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCC--chHHHHHHHhH-HHhhHHhHHHhHhhhhccc--CcchHHHHHH
Q 022198          206 DSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPR--YSGVLLGLSNT-AGVLAGVFGTAATGYILQH--GSWDDVFKVS  279 (301)
Q Consensus       206 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~--~~g~a~g~~~~-~~~lgg~~~~~l~g~l~~~--~~~~~~f~~~  279 (301)
                      ......+.... .+.+.+. ..+...+...+..|+  .++...+.... ...++..++|.+.+.+.+.  .+|...|...
T Consensus        92 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          92 VGLALLLILRLLQGLGGGG-LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             chHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            11212211111 1121111 111222333444553  66777776666 4666777777666666554  4577655444


Q ss_pred             H
Q 022198          280 V  280 (301)
Q Consensus       280 ~  280 (301)
                      .
T Consensus       171 ~  171 (338)
T COG0477         171 A  171 (338)
T ss_pred             H
Confidence            3

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.10  E-value=0.3  Score=44.74  Aligned_cols=159  Identities=19%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             HHhHHHHHHHHhCC---Ccchh----hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH-HHHH
Q 022198          130 LTWMPTYYNQVLHF---NLTES----GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF-FLTQ  201 (301)
Q Consensus       130 ~~wlp~~l~~~~g~---s~~~~----~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~  201 (301)
                      .+..|.|+++..+-   ++.+.    ++...+..+...+-.++-|.++|+.|+|+       +.......+.... +...
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk-------~~~~~f~~i~i~~~~~L~  107 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRK-------KFFGFFTAIGIISTFLLW  107 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc-------hHHHHHHHHHHHHHHHHH
Confidence            35677888766555   55443    33334445556666778889999998773       2221111111111 1111


Q ss_pred             hhcc-CChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh--hhhc----------
Q 022198          202 LSHV-DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT--GYIL----------  267 (301)
Q Consensus       202 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~--g~l~----------  267 (301)
                      +... ......+.+++.......++.....+...+..+ +..+..++.....+++|+.+.-..+  +...          
T Consensus       108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l  187 (438)
T COG2270         108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL  187 (438)
T ss_pred             HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEe
Confidence            1222 223333333332111111111111233334433 3445555666667777666543332  1111          


Q ss_pred             ------ccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198          268 ------QHGSWDDVFKVSVGLYLVGTAVWNLFST  295 (301)
Q Consensus       268 ------~~~~~~~~f~~~~~~~~v~~~~~~~~~~  295 (301)
                            |...-+.++.+.++.+++..+.+.+..+
T Consensus       188 ~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~  221 (438)
T COG2270         188 LGLPPADGEDVRITGLLAALWWLLFALPMILNVH  221 (438)
T ss_pred             eccCccccccchhHHHHHHHHHHHHHhHHHhccc
Confidence                  1122456777788888887777666543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.06  E-value=3.1  Score=39.09  Aligned_cols=164  Identities=10%  Similarity=0.052  Sum_probs=83.7

Q ss_pred             hhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-c---------CCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198            6 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-F---------GWPSVFYSFGSLGTVWFTVWLSKAHSSPA   75 (301)
Q Consensus         6 ~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~---------gWR~~F~~~g~l~~~~~~~~~~~~~~~p~   75 (301)
                      ....|.+..+|-.|-.++++.+.+++..++..+..++.+. .         .=+..|.+.+..+++......+..+.-++
T Consensus       171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~  250 (509)
T COG3202         171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLT  250 (509)
T ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4567888899999999999999999999988887777651 1         13344555555554432222222222222


Q ss_pred             CCCCCCHHHHHHHHhccCCCCCCC-CCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchhhhH--
Q 022198           76 EDPQLRPAEKKLIVSSCASKEPVK-TIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTESGLF--  151 (301)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~~~~--  151 (301)
                      ++... .++.+   +++.++...+ ...++-++|+|+++...+...+.+....-+ .+|-.- .++.+-.+.....++  
T Consensus       251 ~~~f~-~~~~~---kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~-ik~~~~~~~~~~~f~~~  325 (509)
T COG3202         251 DPLFY-LRAKK---KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSG-IKELYPTTNEYTAFMGR  325 (509)
T ss_pred             Ccchh-HHHhc---ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHhcCChhHHHHHHHH
Confidence            22111 11110   0000111100 113555788999888766655544433332 355433 222333332333333  


Q ss_pred             -hhhhHHH-HHHHHHHHHHHHHHHH
Q 022198          152 -CVLPWLT-MAFSANLGGWIADTLV  174 (301)
Q Consensus       152 -~~~~~i~-~~~g~~~~G~l~Dr~~  174 (301)
                       ....++. .++....++-+..|.|
T Consensus       326 ~~~~tgvv~~v~~~~~~s~~ir~~G  350 (509)
T COG3202         326 FQIWTGVVSLVVFLFPGSNLIRRVG  350 (509)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhh
Confidence             3333333 3445566666666665

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.95  E-value=4.2  Score=40.09  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=46.9

Q ss_pred             CchhhhHhhccCcc---hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------CCchhHHhhhhhHHHH
Q 022198            2 PAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFGSLGTVW   62 (301)
Q Consensus         2 p~~~~~i~~~~p~~---~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------gWR~~F~~~g~l~~~~   62 (301)
                      |+..+...|-++++   +|-+...++..+.++|+.++.++.+++.+..       ||...|.+.+++-++.
T Consensus       104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia  174 (654)
T TIGR00926       104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA  174 (654)
T ss_pred             cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence            56667778888654   4678888889999999999999998887443       6999999866654443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=94.73  E-value=0.025  Score=53.14  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=44.9

Q ss_pred             HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCC
Q 022198          125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  178 (301)
Q Consensus       125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~  178 (301)
                      ..-.+...+++|.. ++|+++.+.|.++..-.+..+++.++.|+++||+.+|+.
T Consensus        26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~   78 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRP   78 (618)
T ss_pred             cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence            34446678888887 569999999999988899999999999999999976643

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.18  E-value=3.7  Score=37.51  Aligned_cols=165  Identities=15%  Similarity=0.012  Sum_probs=82.4

Q ss_pred             hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198          103 WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  182 (301)
Q Consensus       103 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~  182 (301)
                      ++++++-|....+.......-.++.+--.-.+.-+. ++|++..+-+++..+..-...+.....|+.+.  +.|.+....
T Consensus       258 l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLl-e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~l  334 (510)
T KOG3574|consen  258 LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLL-EHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFL  334 (510)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHH-HcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHH
Confidence            456777787776666555555565555566666666 56999988887764433344444444443332  123333222


Q ss_pred             HHHHH-HHHhhHHHHHHHHHhhccCC-----hHHHHHHHHHHHhh-hhhhhcch---hhhhhc-cCCCchHHHHHHHhHH
Q 022198          183 VRKIM-QSIGFLGPAFFLTQLSHVDS-----PAMAVLCMACSQGT-DAFSQSGL---YSNHQD-IAPRYSGVLLGLSNTA  251 (301)
Q Consensus       183 ~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~p~~~g~a~g~~~~~  251 (301)
                      .+... ...+....+ ..........     +...-++..+...+ +.+..+..   ++.... ..|+..|+-+.+.|+.
T Consensus       335 ka~~~R~~~~~~~t~-Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTL  413 (510)
T KOG3574|consen  335 KAVPYRLGGGLVQTA-LVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTL  413 (510)
T ss_pred             HhhhHHHHHHHHHHH-HHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHH
Confidence            11111 111111111 1111111111     11111111111111 11111111   112222 3467889999999999


Q ss_pred             HhhHHhHHHhHhhhhcccCc
Q 022198          252 GVLAGVFGTAATGYILQHGS  271 (301)
Q Consensus       252 ~~lgg~~~~~l~g~l~~~~~  271 (301)
                      .++||.--..+.+++.|..+
T Consensus       414 snLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  414 SNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHhcCCcHHHHHHHhcccCc
Confidence            99999999999999988633

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.67  E-value=1.2  Score=40.37  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=46.9

Q ss_pred             CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      ++.+.....+.....++|+.+++.+.+++-++.||...|.+.++..+++.+.+..
T Consensus        67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            3456778888999999999999999999999999999999999888888777644

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.67  E-value=9.2  Score=36.12  Aligned_cols=39  Identities=13%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             hhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198          229 LYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL  267 (301)
Q Consensus       229 ~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~  267 (301)
                      .|+...|.. +++..+-.++...++++|..+++.+..++.
T Consensus       150 FW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       150 FWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555554 467888999999999999999999998876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.83  E-value=10  Score=36.71  Aligned_cols=172  Identities=15%  Similarity=0.098  Sum_probs=93.6

Q ss_pred             HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198          120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL  199 (301)
Q Consensus       120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
                      .+...++|++..=+-+|+.+++|.+...+........-......+++++++|-+-.|-..+... -.+..++..+..+..
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~-s~i~~~G~~~lt~~a  125 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIG-SLISLLGLFGLTLSA  125 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3455667777666668999999999877777666555456677789999999885541111100 001111111111111


Q ss_pred             HHhhc-------------cC--ChHHH-HHHHHHH-Hhhhhhhh-cchhhhhhcc----CCC---chHHHHHHHhHHHhh
Q 022198          200 TQLSH-------------VD--SPAMA-VLCMACS-QGTDAFSQ-SGLYSNHQDI----APR---YSGVLLGLSNTAGVL  254 (301)
Q Consensus       200 ~~~~~-------------~~--~~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~----~p~---~~g~a~g~~~~~~~l  254 (301)
                      .....             ..  +.... +...... .+.+.... +.+.+...|.    .|+   ....-..+.....+.
T Consensus       126 ~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~  205 (571)
T KOG1237|consen  126 MIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNG  205 (571)
T ss_pred             HhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHH
Confidence            10000             00  11111 1111110 11111110 1111221222    122   234677777888888


Q ss_pred             HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          255 AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       255 gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      |..++..+.-+.-|+.+|..+|.+..++.+++.+++..
T Consensus       206 g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  206 GALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            99999999999988889999999988888887766543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=87.56  E-value=1.2  Score=37.59  Aligned_cols=60  Identities=30%  Similarity=0.567  Sum_probs=46.7

Q ss_pred             CchhhhHhhccCc-chhHHHHHHHHh-hhhhhHHHHhhhHHHHhhh--cCCchhHHhhhhhHHH
Q 022198            2 PAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTV   61 (301)
Q Consensus         2 p~~~~~i~~~~p~-~~rg~a~~~~~~-g~~lG~~~g~~l~~~l~~~--~gWR~~F~~~g~l~~~   61 (301)
                      |....+++|++|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.........
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            5667889999998 789999999998 5778888888777666554  7899988775555533

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=87.37  E-value=0.84  Score=41.44  Aligned_cols=58  Identities=17%  Similarity=0.278  Sum_probs=47.4

Q ss_pred             CchhhhHhhccCcc---hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhH
Q 022198            2 PAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG   59 (301)
Q Consensus         2 p~~~~~i~~~~p~~---~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~   59 (301)
                      |+..++.+|-++++   +|.+.-.+++.+.++|..++..+.+++-+.+||...|.+.++.-
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~  112 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM  112 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH
Confidence            45667788888655   56778888999999999999999999999999999999855543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=87.31  E-value=5.3  Score=37.26  Aligned_cols=47  Identities=17%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             chhhhHhhccCcchhHH-HHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHH
Q 022198            3 AMNNILSKWVPVAERSR-SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY   53 (301)
Q Consensus         3 ~~~~~i~~~~p~~~rg~-a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~   53 (301)
                      ++-++++|.+.+++|-+ +.++...-..+|..+|..+++    ..|||-.|-
T Consensus       162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~~  209 (498)
T KOG0637|consen  162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIFP  209 (498)
T ss_pred             hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEee
Confidence            35578899997777776 999999999999999888776    557776653

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=86.93  E-value=5.3  Score=38.26  Aligned_cols=33  Identities=12%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022198          143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVS  175 (301)
Q Consensus       143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~  175 (301)
                      +++...|.+.....+..++++.++|+.+-|.-+
T Consensus       290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk  322 (521)
T PF02990_consen  290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLYK  322 (521)
T ss_pred             ccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455656666666667788888888888888754

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=86.75  E-value=5  Score=35.43  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc----------------CcchHHHHHHHHHHHHHHHHHHhh
Q 022198          237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------------GSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~----------------~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +++.++...++.+.+..+|..++|.+.+.+...                ..|+..+...+.+.++..+.+...
T Consensus        40 ~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        40 PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345678888999999999999999999988743                246677775555544444444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.03  E-value=38  Score=31.88  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=27.0

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhh
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF   38 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l   38 (301)
                      ..+++|+.++|++.|..++.=+-...+..+|..+
T Consensus       124 G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  124 GGYLTSNSTRETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            3578999999999999998877777777776543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=82.41  E-value=2.6  Score=36.12  Aligned_cols=54  Identities=7%  Similarity=-0.056  Sum_probs=34.1

Q ss_pred             hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhH
Q 022198            4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG   59 (301)
Q Consensus         4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~   59 (301)
                      +.....+.||+ +||+++|+.-+...+++.+=..+...+-+.-.-+..+++ +..+
T Consensus       117 ~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l-a~~~  170 (250)
T PF06813_consen  117 SLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL-AVLP  170 (250)
T ss_pred             HHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH-HHHH
Confidence            34556688985 899999999998888766655554444443234444443 4433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.78  E-value=49  Score=31.53  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198          237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH  269 (301)
Q Consensus       237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~  269 (301)
                      .|...|+-+.+.|+..|+||.-...++-+++|.
T Consensus       435 DP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  435 DPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             CcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            578899999999999999999998888888774

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.17  E-value=2.4  Score=37.22  Aligned_cols=50  Identities=16%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC---CchhHHh
Q 022198            5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFYS   54 (301)
Q Consensus         5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g---WR~~F~~   54 (301)
                      +..++...|+++-|++-|++++..++|..+-+.+.+.+.+.-|   |-.+|++
T Consensus       374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl  426 (459)
T KOG4686|consen  374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL  426 (459)
T ss_pred             hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence            4567788999999999999999999999999999999988644   8888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	8e-42

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  149 bits (377), Expect = 8e-42
 Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 12/305 (3%)

Query: 2   PAMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGT 60
           P     +  W    ER   +++      +G  +  L F   +     W +  Y       
Sbjct: 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 197

Query: 61  VWFTVWLSKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWAL 115
           +      +    +P         E K             +   K I    +L    +W +
Sbjct: 198 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI 257

Query: 116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS 175
            +++       + +L W PTY  +V HF L +S     L          L GW++D +  
Sbjct: 258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 317

Query: 176 KGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 235
                T V      +  +  A  +  ++   +P + ++CM             +  +  +
Sbjct: 318 GNRGATGVFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373

Query: 236 IAPRYS-GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293
           +AP+ + G   G +   G L G V  +A  GY +    WD  F V +G  ++   +  + 
Sbjct: 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Query: 294 STGEK 298
             GEK
Sbjct: 434 MIGEK 438

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.81
2xut_A	524	Proton/peptide symporter family protein; transport	99.63
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.5
2xut_A	524	Proton/peptide symporter family protein; transport	99.4
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.27
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.19
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.17
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.17

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=1.6e-26  Score=212.35  Aligned_cols=283  Identities=16%  Similarity=0.228  Sum_probs=193.8

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC-CchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g-WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |+..++++|++|+|+|+++.++.+.+.++|..+|+.+++.+.+.+| ||++|++.+++.++..++.....+|+|++....
T Consensus       138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (451)
T 1pw4_A          138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP  217 (451)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred             chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence            5678899999999999999999999999999999999999999999 999999988877665444444566666532111


Q ss_pred             CHHHH-----HHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           81 RPAEK-----KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      ++++.     ....++.+++...++..+++++|+|.++...+..++...+.++...|+|.|+++.+|+|..+++.+....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  297 (451)
T 1pw4_A          218 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  297 (451)
T ss_dssp             SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred             ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            11100     0000000001111111246788999999988888888888889999999999988999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc--CChHHHHHH-HHHHHhhhhhhhcchh
Q 022198          156 WLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV--DSPAMAVLC-MACSQGTDAFSQSGLY  230 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (301)
                      .++..++.++.|+++||+  ++|        +.+.....+..++........  .+......+ ...+.+... ..+...
T Consensus       298 ~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~  368 (451)
T 1pw4_A          298 EYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG-PVMLIG  368 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc-hHHHHH
Confidence            999999999999999998  644        222111111111222222222  233222222 222222221 112223


Q ss_pred             hhhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          231 SNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       231 ~~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      ....+..| +.++++.|+.+...++ ++.++|.+.|++.|+.|+...|.+.+++.+++.+.....
T Consensus       369 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          369 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555 6799999999999999 999999999999999889999988877777766554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=2e-24  Score=197.84  Aligned_cols=263  Identities=9%  Similarity=0.060  Sum_probs=180.5

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-hhcC-------------------------CchhHHhh
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFG-------------------------WPSVFYSF   55 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-~~~g-------------------------WR~~F~~~   55 (301)
                      |+..++++|++|+|+|++++++.+.+.++|..+++.+++.+. +..+                         ||+.|++.
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  215 (438)
T 3o7q_A          136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence            567889999999999999999999999999999999999998 5554                         99999887


Q ss_pred             hhhHHHHHHHHhh-hccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHH
Q 022198           56 GSLGTVWFTVWLS-KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  134 (301)
Q Consensus        56 g~l~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp  134 (301)
                      +.+..+...++.. ..||+++++   +++          ++++..+.++++++|+|.++...+..++.....+....|+|
T Consensus       216 ~~~~~~~~~~~~~~~~p~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (438)
T 3o7q_A          216 VAIVLLVALLIMLTKFPALQSDN---HSD----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI  282 (438)
T ss_dssp             HHHHHHHHHHHHHCCCCCCTTTC---CCC----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcccccc---ccc----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766554333332 222222111   000          01111123567899999999988888877777888899999


Q ss_pred             HH-HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH
Q 022198          135 TY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL  213 (301)
Q Consensus       135 ~~-l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (301)
                      .| +++.+|+|..+++.+.....++..++.+++|+++||+++|+        .+. ...+..++.........+....+.
T Consensus       283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T 3o7q_A          283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--------VLA-AYALIAMALCLISAFAGGHVGLIA  353 (438)
T ss_dssp             HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------HHH-HHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99 88888999999999999999999999999999999998652        111 111112222221222223322222


Q ss_pred             HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHH
Q 022198          214 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTA  288 (301)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~  288 (301)
                      +...+++.+. ..+..++...+..|++++.+.++.+ .+.+++.++|.+.|++.|+.| ++..|.+.+++.++..+
T Consensus       354 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          354 LTLCSAFMSI-QYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            2222222221 1233344444555655888888766 678999999999999999966 88888876655555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=7.3e-24  Score=190.54  Aligned_cols=256  Identities=9%  Similarity=0.023  Sum_probs=177.6

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR   81 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~   81 (301)
                      |...+++.|++|+|+|+++.+..+.+.++|..+++.+++++.+.+|||+.|++.+++.++..+......||+|+++++  
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  184 (375)
T 2gfp_A          107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--  184 (375)
T ss_dssp             HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--
T ss_pred             hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--
Confidence            566789999999999999999999999999999999999999999999999987777655433233334443322110  


Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198           82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~  161 (301)
                                  +++  .+.++++++|+|.++...+..++...+.+...+|.|.|+++.+|+|+.+.+.+.....++..+
T Consensus       185 ------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  250 (375)
T 2gfp_A          185 ------------RTR--LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF  250 (375)
T ss_dssp             ------------CCC--TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             ------------ccc--HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence                        001  123456799999999888888887888888999999999998999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198          162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRY  240 (301)
Q Consensus       162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  240 (301)
                      +.++.++++||.+++  ...    .....................+.... +.....+++.+. ..+.......|..|++
T Consensus       251 ~~~~~~~l~~r~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~  323 (375)
T 2gfp_A          251 GAWFAGRPNKRFSTL--MWQ----SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFPFL  323 (375)
T ss_dssp             HHHHHHTTTTHHHHH--HHH----HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCCcc
Confidence            999999999998752  000    00000000000001001011112211 111222222222 1233334445555688


Q ss_pred             hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHH
Q 022198          241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV  280 (301)
Q Consensus       241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~  280 (301)
                      ++++.|+.+..+++|+.++|.+.|.+.++.++...+.+.+
T Consensus       324 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          324 AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999999999988877777766543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=1.6e-21  Score=178.46  Aligned_cols=276  Identities=11%  Similarity=0.038  Sum_probs=167.8

Q ss_pred             hhhHhhccCc--chhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198            5 NNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP   82 (301)
Q Consensus         5 ~~~i~~~~p~--~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~   82 (301)
                      ...+.++.++  |+|++..|....+.++|..+++.+++++.+ ++||+.|++.+++.++..+.+. ..+|+|++.++  +
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~--~  197 (417)
T 2cfq_A          122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLF-FAKTDAPSSAT--V  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSC-SSCCCCSCSSC--S
T ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHH-HcCcccccccc--c
Confidence            3445566554  466777888888889999999999999887 6999999987666544332322 22332211110  0


Q ss_pred             HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC---CcchhhhHhhhhHHHH
Q 022198           83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF---NLTESGLFCVLPWLTM  159 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~---s~~~~~~~~~~~~i~~  159 (301)
                      +|+    ++ .++++....++++++|+|+++...+..++....++...+|+|.|+++.++.   +..+.++...+..++.
T Consensus       198 ~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  272 (417)
T 2cfq_A          198 ANA----VG-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN  272 (417)
T ss_dssp             SSS----SS-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHH
T ss_pred             ccc----cc-cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            000    00 001110112356789999988776665554455666778999999766542   2344566666777788


Q ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC
Q 022198          160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP  238 (301)
Q Consensus       160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p  238 (301)
                      .++.++.|+++||++||+        .+. .+....++.........+....+.... .+.+...+ ....+....|..|
T Consensus       273 ~~~~~~~g~l~dr~g~~~--------~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p  342 (417)
T 2cfq_A          273 ASIMFFAPLIINRIGGKN--------ALL-LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL-LVGCFKYITSQFE  342 (417)
T ss_dssp             HHHHHHHHHHHHHHCHHH--------HHH-HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHH-HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcHHH--------HHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
Confidence            899999999999998762        111 222222222222223333332222111 11111111 1222334455555


Q ss_pred             -CchHHHHHHH-hHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCccc
Q 022198          239 -RYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV  299 (301)
Q Consensus       239 -~~~g~a~g~~-~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~  299 (301)
                       +.+|++.+.. +..+++|+.++|.+.|++.|+.|+...|.+.+++.+++.+......+++++
T Consensus       343 ~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence             6789999984 888889999999999999998788888988888888777665454444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=4e-20  Score=171.92  Aligned_cols=286  Identities=12%  Similarity=0.053  Sum_probs=165.3

Q ss_pred             CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCC-CC--C
Q 022198            2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS-PA--E   76 (301)
Q Consensus         2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~-p~--~   76 (301)
                      |+..++++|++|+++  |+++.+.++.+.++|..+|+.+++.+.+.+|||++|++.++..++..+.+....++. ++  +
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            567889999999988  788888899999999999999999999999999999987665544322222111111 11  1


Q ss_pred             CCC--CCHHHHHHHHhc------------------cCCCC-----------------------CCCCCChHHhhcChhHH
Q 022198           77 DPQ--LRPAEKKLIVSS------------------CASKE-----------------------PVKTIPWGLILSKPPVW  113 (301)
Q Consensus        77 ~~~--~~~~~~~~~~~~------------------~~~~~-----------------------~~~~~~~~~ll~~~~~~  113 (301)
                      +++  .++++.+...+.                  ...+.                       ..++.+..+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            111  122222110000                  00000                       00000001111222233


Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198          114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  193 (301)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~  193 (301)
                      ...+..++....+....+++|.|+++..+.+..+.+.+.....++..++.++.|+++||++||+....  ++.  ..+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~--~~~--~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP--TKF--AVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH--HHH--HHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch--HHH--HHHHH
Confidence            33434444334455567889999998889998888998888899999999999999999987743221  111  11111


Q ss_pred             HHHHHH--HHhhc-------cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhH
Q 022198          194 GPAFFL--TQLSH-------VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAA  262 (301)
Q Consensus       194 ~~~~~~--~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l  262 (301)
                      ..++..  .....       ..+....+ .....+.+.+. ..+..+....|..| +.++++.|+.+...++|+.++|.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~  441 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL  441 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111  11100       11222222 22222222221 12223344455555 678999999999999999999999


Q ss_pred             hhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          263 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       263 ~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      .+++.|. +....|.+.+++.+++.+....+
T Consensus       442 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          442 VTLYNAK-SEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             GGGGGGS-STTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876 46667776666666655544443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.81  E-value=1.2e-18  Score=161.73  Aligned_cols=291  Identities=14%  Similarity=0.071  Sum_probs=170.3

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------hcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------RFGWPSVFYSFGSLGTVWFTVWLSKAHSS   73 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~   73 (301)
                      |.+..+++|+.|+++|++..++.+.+..+|.+++..++..+..        .++||..+.+..+..++. .+.....||+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peS  223 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPES  223 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCC
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCC
Confidence            5677899999999999999999999999999999888877654        346888888755554443 4455567888


Q ss_pred             CCCC--CCCCHHHHHHHHh---c-----------cCCCCCCCCCChHHhhcChhHHHHHH-HHHhhHHHHHHHHHhHHHH
Q 022198           74 PAED--PQLRPAEKKLIVS---S-----------CASKEPVKTIPWGLILSKPPVWALIV-SHFCHNWGTFILLTWMPTY  136 (301)
Q Consensus        74 p~~~--~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~wlp~~  136 (301)
                      |+..  ++.+++.++..++   +           ...++.++.......++.++...... ..+.+..+.+.+..|.|.+
T Consensus       224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (491)
T 4gc0_A          224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV  303 (491)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence            8631  1111111110000   0           00000000111223444454444333 3334444566666777666


Q ss_pred             HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH-HhhccCChHHHHHHH
Q 022198          137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLSHVDSPAMAVLCM  215 (301)
Q Consensus       137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  215 (301)
                      .+ ..+.+..+......+..+...++.++++++.||+|||+....      .........+.+. ...........+..+
T Consensus       304 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  376 (491)
T 4gc0_A          304 FK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII------GALGMAIGMFSLGTAFYTQAPGIVALLSM  376 (491)
T ss_dssp             HH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH------HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc------chHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            55 568888777777778888999999999999999987632111      1111111111111 111222222222222


Q ss_pred             HHH-HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc------CcchHHHHHHHHHHHHHH
Q 022198          216 ACS-QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGT  287 (301)
Q Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~------~~~~~~f~~~~~~~~v~~  287 (301)
                      ... .++.....+..+....|..| +.|+++.|+.+..+++++.+++.+.+.+.+.      .++...|.+.+++.+++.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~  456 (491)
T 4gc0_A          377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA  456 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            111 11111111223445567777 6799999999999999999999888777654      234456677667777665


Q ss_pred             HHHHh--hcCCcccc
Q 022198          288 AVWNL--FSTGEKVV  300 (301)
Q Consensus       288 ~~~~~--~~~~~~~~  300 (301)
                      +....  .+|++|++
T Consensus       457 i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          457 LFMWKFVPETKGKTL  471 (491)
T ss_dssp             HHHHHHCCCCTTCCH
T ss_pred             HHHHheecCCCCCCH
Confidence            54433  38888875

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.63  E-value=2.5e-15  Score=140.71  Aligned_cols=62  Identities=21%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             CchhhhHhhccCcchhHHHHHH---HHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHH
Q 022198            2 PAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF   63 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~---~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~   63 (301)
                      |+..++++|++|+++|+++.+.   .+.+.++|..+|+.+++.+.+.+|||++|++.+++.++..
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~  192 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVAT  192 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            5678899999999999887777   9999999999999999999999999999998777665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.50  E-value=1.3e-12  Score=121.02  Aligned_cols=173  Identities=10%  Similarity=0.080  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH-----hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV  183 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~-----~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~  183 (301)
                      +..+...+..++..+++|+...++|.|++++     +|+|..+.+++.....++..++.+++|+++|| +|||+      
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence            3566677777778889999999999999998     99999999999999999999999999999999 78762      


Q ss_pred             HHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCc--hHHHHHHHhHHHhhHHhHH
Q 022198          184 RKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRY--SGVLLGLSNTAGVLAGVFG  259 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~--~g~a~g~~~~~~~lgg~~~  259 (301)
                        .+ ..+.+..++........++....+. ....+.+.+.. .+...+...|.. +++  |+.+.++.+...++|..++
T Consensus        87 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  162 (491)
T 4aps_A           87 --AV-FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA  162 (491)
T ss_dssp             --HH-HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence              11 1222222222222223333333222 22222322222 122233334443 445  7888888899999999999


Q ss_pred             HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198          260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      |.+.|++.++.+|+..|.+.++..+++.+.+..
T Consensus       163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999889999999887777766655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.40  E-value=5.1e-12  Score=118.15  Aligned_cols=172  Identities=14%  Similarity=0.064  Sum_probs=115.5

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC------CCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCCcHHH
Q 022198          110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH------FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTT  182 (301)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g------~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~~~~~  182 (301)
                      |.+|...+..++...++|+...++|.|+++++|      +|..+.+++.....++..++.+++|+++||+ |||+     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----   86 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----   86 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence            455666677777788899999999999999999      9999999999999999999999999999999 8652     


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhccC-ChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHH---HhHHHhhHH
Q 022198          183 VRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGL---SNTAGVLAG  256 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~---~~~~~~lgg  256 (301)
                         .+. .+.+..++......... +....+. ....+.+.+.. .+...+...|.. +++|+.+.+.   .+...++|+
T Consensus        87 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           87 ---TIL-WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             ---HHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence               111 12222222221122223 3332222 22222222211 122233344444 4566655444   888899999


Q ss_pred             hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198          257 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN  291 (301)
Q Consensus       257 ~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~  291 (301)
                      .++|.+.|++.++.+|+..|.+.+++.+++.+.+.
T Consensus       162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988899999888777776655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.27  E-value=3.4e-10  Score=102.92  Aligned_cols=167  Identities=11%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198          115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG  194 (301)
Q Consensus       115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~  194 (301)
                      ..+..++...........+|. +++++|+|..+.+++.....++..++.++.|+++||+|||+.        + ..+.+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~--------l-~~~~~~  100 (438)
T 3o7q_A           31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--------I-ITGLFL  100 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH--------H-HHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH--------H-HHHHHH
Confidence            344444444455556666766 567889999999999999999999999999999999997621        1 111211


Q ss_pred             HHHHHHHh---hccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc-c
Q 022198          195 PAFFLTQL---SHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL-Q  268 (301)
Q Consensus       195 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~-~  268 (301)
                      .++.....   ...++....+.. ...+.+.+.. .+...+...|.. +++|+.+.++.+....+|..++|.+.+.+. +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22111111   233344333222 2222222222 122233444554 578999999999999999999999999998 6


Q ss_pred             cCc-------------------------chHHHHHHHHHHHHHHHHHHh
Q 022198          269 HGS-------------------------WDDVFKVSVGLYLVGTAVWNL  292 (301)
Q Consensus       269 ~~~-------------------------~~~~f~~~~~~~~v~~~~~~~  292 (301)
                      ..+                         |+..|.+.++..++..+.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            544                         888887766655555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.27  E-value=5.4e-11  Score=108.59  Aligned_cols=170  Identities=11%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 022198          112 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG  191 (301)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~  191 (301)
                      ++...+..++.....+.....+|.+.+ ++ .|..+.+++.....++..++.++.|+++||+|||+        .+. .+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~--------~l~-~~   98 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV--------FLP-AG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH--------HHH-HH
Confidence            344444455555555556677777665 56 99999999999999999999999999999999762        111 11


Q ss_pred             hHHHHHHHHHhhc----cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhh
Q 022198          192 FLGPAFFLTQLSH----VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGY  265 (301)
Q Consensus       192 ~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~  265 (301)
                      .+..++.......    ..+....+ .....+.+.+.. .+...+...|..| ++|+.+.++.+....+|..++|.+.++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111    22332222 222222222211 1222344455554 789999999999999999999999999


Q ss_pred             hcccCc-chHHHHHHHHHHHHHHHHHHhh
Q 022198          266 ILQHGS-WDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       266 l~~~~~-~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      +.++.+ |+..|.+.+++.++..+....+
T Consensus       178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          178 GMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            888877 9999988877776655544333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.19  E-value=2.2e-12  Score=117.60  Aligned_cols=173  Identities=13%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198          105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR  184 (301)
Q Consensus       105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~  184 (301)
                      +.+|+|++|......++...++.....++|.|+++++|+|..+.+++.....++..++.++.|+++||+|||+.....  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~--   79 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI--   79 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH--
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH--
Confidence            368999999887777666666666788999999988999999999999999999999999999999999987421110  


Q ss_pred             HHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhhhcchhhhhhcc---CCCchHHHHHHHhHHHhhHHhHH
Q 022198          185 KIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI---APRYSGVLLGLSNTAGVLAGVFG  259 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~g~a~g~~~~~~~lgg~~~  259 (301)
                        ..................  .......  ....+...+.. .+.......+.   .++.++.+.|..+..+.+|+.++
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~  154 (417)
T 2cfq_A           80 --ITGMLVMFAPFFIFIFGPLLQYNILVG--SIVGGIYLGFC-FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG  154 (417)
T ss_dssp             --HHHTTSCHHHHHHHTHHHHHHTTCCHH--HHGGGSSTTHH-HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence              000000000010000000  0000000  00000001100 00001111111   12345666777788889999999


Q ss_pred             HhHhhhhcccCcchHHHHHHHHHHHH
Q 022198          260 TAATGYILQHGSWDDVFKVSVGLYLV  285 (301)
Q Consensus       260 ~~l~g~l~~~~~~~~~f~~~~~~~~v  285 (301)
                      |.+.|++.+. +|+..|++.++..++
T Consensus       155 ~~l~~~l~~~-~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          155 ASIVGIMFTI-NNQFVFWLGSGCALI  179 (417)
T ss_dssp             HHHHHHHHHH-CSHHHHTTTTTTTTT
T ss_pred             HHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            9999999875 688888765544333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.17  E-value=9.2e-11  Score=104.77  Aligned_cols=162  Identities=12%  Similarity=0.020  Sum_probs=104.3

Q ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH
Q 022198          116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP  195 (301)
Q Consensus       116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~  195 (301)
                      .+..++...........+|.+ .+++|.|..+.++......++..++.++.|+++||+|||+......      ......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~------~~~~~~   78 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM------SIFMLA   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH------HHHHHH
Confidence            344444445555566667765 4578999999999999999999999999999999999876543211      111111


Q ss_pred             HHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198          196 AFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD  273 (301)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~  273 (301)
                      .+.. .  ..++....+. ....+.+.+.. .+...+...|. ++++|+.+.+..+....+|..++|.+.+++.++.+|+
T Consensus        79 ~~~~-~--~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  154 (375)
T 2gfp_A           79 TLVA-V--TTSSLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR  154 (375)
T ss_dssp             HHHH-H--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHH-H--HhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence            1111 1  1112222221 11122222211 12222333344 3578899999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHHH
Q 022198          274 DVFKVSVGLYLVGTA  288 (301)
Q Consensus       274 ~~f~~~~~~~~v~~~  288 (301)
                      ..|.+.++..++..+
T Consensus       155 ~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          155 ACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887777766655

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.17  E-value=4.7e-05  Score=69.92  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh------------------ccCC
Q 022198          146 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------------------HVDS  207 (301)
Q Consensus       146 ~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  207 (301)
                      .+.+++.+...++..+|.++.|+++||+|||+.        +. +..+...+......                  ...+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~--------l~-~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~  125 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDS--------LK-IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY  125 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH--------HH-HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------HH-HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh
Confidence            345677777889999999999999999998731        11 11111111111000                  1122


Q ss_pred             hHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198          208 PAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ  268 (301)
Q Consensus       208 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~  268 (301)
                      ....+.. ...+++.+... +.......|..| +.|+...+..+....+|..+++.+...+.+
T Consensus       126 ~~~l~~~R~l~G~g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            2222221 22233332211 122234456654 689999998888777777777666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 21/187 (11%), Positives = 56/187 (29%), Gaps = 2/187 (1%)

Query: 107 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLG 166
           L     W   +  F + +       + P + + + H + +++G+      L       L 
Sbjct: 4   LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63

Query: 167 GWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQ 226
           G ++D L  +   +  +      + F     F+       +  +  +      G    + 
Sbjct: 64  GLLSDKLGLRKYLLWII--TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 227 SGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 286
           +       +   R S    G +   G +    G +  G +    +    +  S    ++ 
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 287 TAVWNLF 293
             ++   
Sbjct: 182 VLLFFAK 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.66
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.32
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.6e-25  Score=202.64  Aligned_cols=287  Identities=17%  Similarity=0.239  Sum_probs=189.2

Q ss_pred             CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198            2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL   80 (301)
Q Consensus         2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~   80 (301)
                      |++.++++|++|+|+|++++++++.+..+|..+++.+++.+.+. .+||+.|++.+.+.++..++.+...+|+|++.+..
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP  214 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc
Confidence            56778999999999999999999999999999999988887765 48999999988877665555555556655433221


Q ss_pred             CHHHH--HHH---HhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198           81 RPAEK--KLI---VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  155 (301)
Q Consensus        81 ~~~~~--~~~---~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~  155 (301)
                      +++|.  +..   .++.+++...++...++++++|.++......++.....++..+|.|.|+++.+|++..+.+....+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T d1pw4a_         215 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  294 (447)
T ss_dssp             SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence            11110  000   0000011111222356788999999888888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhh
Q 022198          156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQ  234 (301)
Q Consensus       156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  234 (301)
                      .++..++.+++|+++||.+++....    ...........+..........++...+.+.. .+++.... .........
T Consensus       295 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~  369 (447)
T d1pw4a_         295 EYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP-VMLIGLHAL  369 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCHHH----HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhcccccccc----ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9999999999999999997653111    11111111111111111112233333322222 22222111 122233344


Q ss_pred             ccCC-CchHHHHHHHhHHHhhHH-hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198          235 DIAP-RYSGVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF  293 (301)
Q Consensus       235 ~~~p-~~~g~a~g~~~~~~~lgg-~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~  293 (301)
                      |..| +.+|++.|+.+..+++++ .++|.+.|++.|+.|+...|.+.+++.+++.+....+
T Consensus       370 ~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         370 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            5555 678999999999988865 5679999999999899988887766666655444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.7e-15  Score=131.82  Aligned_cols=266  Identities=11%  Similarity=0.017  Sum_probs=148.0

Q ss_pred             chhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCC
Q 022198           15 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCAS   94 (301)
Q Consensus        15 ~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   94 (301)
                      +++.+..+........+..+++.+++.+.+. +|+..+........+...+.....+|+|++.++ +++++       .+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~  204 (417)
T d1pv7a_         134 RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATV-ANAVG-------AN  204 (417)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCS-SHHHH-------SC
T ss_pred             hhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhh-hhhhh-------hh
Confidence            3455677777788888888999988888764 555556554555544434444444554433221 22111       01


Q ss_pred             CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHH---HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHH
Q 022198           95 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN---QVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD  171 (301)
Q Consensus        95 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~---~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D  171 (301)
                      ++...+....+.++++..+.......+..........+.+.+..   ++.+.+....+.......++..++..+.+++.|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  284 (417)
T d1pv7a_         205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN  284 (417)
T ss_dssp             CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             cccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhc
Confidence            11111122344555555554443333333233333333333322   233444555666667777888899999999999


Q ss_pred             HHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHH-
Q 022198          172 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLS-  248 (301)
Q Consensus       172 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~-  248 (301)
                      |.++|+        .+ .......++........++....+.. ...+.+.+.. .+...+..+|.. ++.++++.++. 
T Consensus       285 r~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  354 (417)
T d1pv7a_         285 RIGGKN--------AL-LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             HHCHHH--------HH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cccccc--------ch-hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHH
Confidence            987652        11 12222222222223334444333322 2222222222 222334444554 56899999875 


Q ss_pred             hHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCccc
Q 022198          249 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV  299 (301)
Q Consensus       249 ~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~  299 (301)
                      +....+|+.++|.+.|++.|+.|++..|.+.+++.+++.++.....++++.
T Consensus       355 ~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            455668999999999999999889999988887777766655555545443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=7.7e-12  Score=109.23  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=65.8

Q ss_pred             hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198          106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  177 (301)
Q Consensus       106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~  177 (301)
                      .+|||++|...+.+++...+.......+|.|+++++|+|.++.|++.....++..++.++.|+++||+|||+
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~   74 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK   74 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            579999999988888877777777889999999999999999999999999999999999999999999874

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=4.5e-10  Score=99.71  Aligned_cols=150  Identities=13%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             HHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc----cCCh
Q 022198          133 MPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH----VDSP  208 (301)
Q Consensus       133 lp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  208 (301)
                      .-++++ +.|+|.++.+++.....++..++.++.|+++||+|||+        .+. .+.+..++.......    ..+.
T Consensus        47 ~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~  116 (447)
T d1pw4a_          47 AMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV--------FLP-AGLILAAAVMLFMGFVPWATSSI  116 (447)
T ss_dssp             HHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HHHHHHHHHHHHHHHCHHHHSSS
T ss_pred             HHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH--------HHH-HHHHHHHHHHhhccccchhhhhH
Confidence            334666 47999999999999999999999999999999999762        111 111111111111111    1122


Q ss_pred             -HHHHHHHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHH
Q 022198          209 -AMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLV  285 (301)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v  285 (301)
                       ...+.-...+.+.+.. .+.......+. ++++|+.+.++.+....+|+.++|.+.+.+.+. .+|+..|.+.+.+.++
T Consensus       117 ~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~  195 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL  195 (447)
T ss_dssp             SHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHH
Confidence             1222222222222211 12222333444 457899999999999999999999998887776 6788888776666655


Q ss_pred             HHHHHHhh
Q 022198          286 GTAVWNLF  293 (301)
Q Consensus       286 ~~~~~~~~  293 (301)
                      ..+....+
T Consensus       196 ~~~~~~~~  203 (447)
T d1pw4a_         196 VALFAFAM  203 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            54444444