Citrus Sinensis ID: 022200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVAATSINNN
Secondary Structure (PSIPRED)
cccEEHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccccHHHcccccccHHHHHHHcccHHHHHHHHHccccHcHHHccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccEEEccccccc
Coil and Loop (DISEMBL)
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDaylidqidqvpfvdtHLHIAASMGHVNFALEIMRlkpsfarkqnqygcsplhlaLQNSHTQMVLRLIDVDRnlvrvqgregvtplhYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRyvnkddiinrkddegsiLLHISISRKLESTVrnfggregsslaTVEIADYLKRGLIWRQKVLLFFYRsslsitdenrnaPLVVAILITTATfqaaltppqdlwgnnsnntdfATNVAATSINNN
Flexible Loop (DISEMBL)
maalcytlqhqkiksrtdqRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGregvtplhyVAENVDLLYKFLTACPKSILQVTIRKETALyvaakndklkVLKVMLGWLRYVNkddiinrkddegsillhisisrklestvrnfggregsslatVEIADYLKRGLIWRQKVLLFFYRSSlsitdenrnAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVaatsinnn
Low Complexity Region (SEG)
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVAATSINNN
Disordered region (IsUnstruct)
****CYTL*****************QAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGN*******************
Disordered Region (DISOPRED)
MAALCYTLQHQKI*SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWG********************
Disordered Region (DISEMBL)
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVAATSINNN
Disordered Region (DISPRO)
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNS******T*V********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALCYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVAATSINNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.455	0.257	0.308	2e-08
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.687	0.395	0.264	1e-06
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.528	0.269	0.257	3e-06
F8W2M1	904	E3 ubiquitin-protein liga	no	no	0.468	0.155	0.272	5e-06
Q3U0D9	909	E3 ubiquitin-protein liga	yes	no	0.468	0.155	0.272	6e-06
D3ZBM7	909	E3 ubiquitin-protein liga	yes	no	0.468	0.155	0.272	8e-06
E1C656	942	E3 ubiquitin-protein liga	yes	no	0.478	0.152	0.270	9e-06
F1N6G5	909	E3 ubiquitin-protein liga	no	no	0.468	0.155	0.272	9e-06
Q8IYU2	909	E3 ubiquitin-protein liga	yes	no	0.478	0.158	0.270	9e-06
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.534	0.114	0.262	1e-05

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
            H+AA  GH+    E++RL P   R  +    SPL+ A    H ++V  ++DVD +   +
Sbjct: 98  FHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMI 157

Query: 117 QGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRK-ETALYVAAKNDKLKVLKVMLG 174
             + G T LH       L + K L     +I+ V  +K +TAL++A K   L+V++ +L 
Sbjct: 158 VRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEIL- 216

Query: 175 WLRYVNKD-DIINRKDDEGSILLHIS 199
                  D  I+N +D +G+  LHI+
Sbjct: 217 -----QADYTILNERDRKGNTALHIA 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 20/227 (8%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
           T LH AA  GH     +++  K     + ++ G + LH+A++  +T++V  L++ D +L+
Sbjct: 161 TALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLI 220

Query: 115 RVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172
                +G TPLH        +++   L  C  S + V    ETAL +A K    +++  +
Sbjct: 221 NSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVP-L 279

Query: 173 LGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGL 232
           L  +   N   I   +  E S       SRKL+ TV   G          E+   L++  
Sbjct: 280 LQKIGMQNARSIKPAEKVEPS-----GSSRKLKETVSEIGH---------EVHTQLEQTG 325

Query: 233 IWRQKVLLFFYRSSLSITDENRNA---PLVVAILITTATFQAALTPP 276
             R+++     R +   T+   NA     +VAILI T  F A    P
Sbjct: 326 RTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVP 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 94/175 (53%), Gaps = 16/175 (9%)

Query: 41  AYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL--KPSFARKQNQYGCSPLHLALQNS 98
           A ++++++++   +T L  AA  GH++   E+++   + S A+K N+ G  PLH+A    
Sbjct: 119 ASIVNEVNELG--ETALFTAADKGHLDVVKELLKYSSRESIAKK-NRSGYDPLHIAAIQG 175

Query: 99  HTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--ENVDLLYKFLTACPKSILQVT-IRKET 155
           H  +V  L+D D  L +  G    TPL   A   + +++ + L+    ++L+++    + 
Sbjct: 176 HHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKA-GNLLEISRSNNKN 234

Query: 156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK-DDEGSILLHISISRKLESTVR 209
           AL++AA+   ++V+K +L      +KD  + R+ D +G   LH+++  +    V+
Sbjct: 235 ALHLAARQGHVEVIKALL------SKDPQLARRIDKKGQTALHMAVKGQSSEVVK 283

Arabidopsis thaliana (taxid: 3702)

>sp|F8W2M1|HACE1_DANRE E3 ubiquitin-protein ligase HACE1 OS=Danio rerio GN=hace1 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 17/158 (10%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  + +    Q+  GC+PLHLA +N   + + RL++ + + V +
Sbjct: 73  LHIAANCGSVE-CLVLLLKRGANPNYQDISGCTPLHLAARNGQKKCMGRLLEYNAD-VNI 130

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRK---ETALYVAAKNDKLKVLKV 171
              EG+T +H++A N   +LL+  +    + +  V +     +TAL+VA +N     ++ 
Sbjct: 131 CNNEGLTAIHWLAVNGRTELLHDLV----QHVTNVDVEDAMGQTALHVACQNGHKTTVQC 186

Query: 172 MLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +L      +    INR +  G+  L+ + S     T +
Sbjct: 187 LL------DSGADINRPNVSGATPLYFACSHGQRDTAQ 218

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  K +    Q+  GC+PLHLA +N   + + +L++   + V +
Sbjct: 69  LHIAANCGSVE-CLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSAD-VNI 126

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRK---ETALYVAAKNDKLKVLKV 171
              EG+T +H++A N   +LL+  +    + +  V +     +TAL+VA +N     ++ 
Sbjct: 127 CNNEGLTAIHWLAVNGRTELLHDLV----QHVTDVDVEDAMGQTALHVACQNGHKTTVQC 182

Query: 172 MLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +L      +    INR +  G+  L+ + S     T +
Sbjct: 183 LL------DSGADINRPNVSGATPLYFACSHGQRDTAQ 214

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division. Specifically interacts with GTP-bound RAC1, mediating ubiquitination and subsequent degradation of active RAC1, thereby playing a role in host defense against pathogens (By similarity). May also act as a transcription regulator via its interaction with RARB.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|D3ZBM7|HACE1_RAT E3 ubiquitin-protein ligase HACE1 OS=Rattus norvegicus GN=Hace1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  K +    Q+  GC+PLHLA +N   + + +L++   + V +
Sbjct: 69  LHIAANCGSVE-CLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSAD-VNI 126

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRK---ETALYVAAKNDKLKVLKV 171
              EG+T +H++A N   +LL+  +    + +  V +     +TAL+VA +N     ++ 
Sbjct: 127 CNNEGLTAIHWLAVNGRTELLHDLV----QHVTDVDVEDAMGQTALHVACQNGHKTTVQC 182

Query: 172 MLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +L      +    INR +  G+  L+ + S     T +
Sbjct: 183 LL------DSGADINRPNVAGATPLYFACSHGQRDTAQ 214

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division. Specifically interacts with GTP-bound RAC1, mediating ubiquitination and subsequent degradation of active RAC1, thereby playing a role in host defense against pathogens. May also act as a transcription regulator via its interaction with RARB.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E1C656|HACE1_CHICK E3 ubiquitin-protein ligase HACE1 OS=Gallus gallus GN=HACE1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  K +    Q+  GC+PLHLA +N   + + +L++   + V +
Sbjct: 69  LHIAANCGSVE-CLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSAD-VNI 126

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174
              EG+T +H++A N   +LL+  +       ++  +  +TAL+VA +N     ++ +L 
Sbjct: 127 CNNEGLTAIHWLAVNGRTELLHDLVQHVSNVDVEDAM-GQTALHVACQNGHKTTVQCLL- 184

Query: 175 WLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
                +    INR +  G+  L+ + S     T +
Sbjct: 185 -----DSGADINRPNVSGATPLYFACSHGQRDTAQ 214

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1N6G5|HACE1_BOVIN E3 ubiquitin-protein ligase HACE1 OS=Bos taurus GN=HACE1 PE=3 SV=3

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  K +    Q+  GC+PLHLA +N   + + +L++   + V +
Sbjct: 69  LHIAANCGSVE-CLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSAD-VNI 126

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRK---ETALYVAAKNDKLKVLKV 171
              EG+T +H++A N   +LL+  +    + +  V +     +TAL+VA +N     ++ 
Sbjct: 127 CNNEGLTAIHWLAVNGRTELLHDLV----QHVSDVDVEDAMGQTALHVACQNGHKTTVQC 182

Query: 172 MLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +L      +    INR +  G+  L+ + S     T +
Sbjct: 183 LL------DSGADINRPNVSGATPLYFACSHGQRDTAQ 214

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division. Specifically interacts with GTP-bound RAC1, mediating ubiquitination and subsequent degradation of active RAC1, thereby playing a role in host defense against pathogens. May also act as a transcription regulator via its interaction with RARB.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LHIAA+ G V   L ++  K +    Q+  GC+PLHLA +N   + + +L++   + V +
Sbjct: 69  LHIAANCGSVE-CLVLLLKKGANPNYQDISGCTPLHLAARNGQKKCMSKLLEYSAD-VNI 126

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174
              EG+T +H++A N   +LL+  +       ++  +  +TAL+VA +N     ++ +L 
Sbjct: 127 CNNEGLTAIHWLAVNGRTELLHDLVQHVSDVDVEDAM-GQTALHVACQNGHKTTVQCLL- 184

Query: 175 WLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
                +    INR +  G+  L+ + S     T +
Sbjct: 185 -----DSGADINRPNVSGATPLYFACSHGQRDTAQ 214

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division. Specifically interacts with GTP-bound RAC1, mediating ubiquitination and subsequent degradation of active RAC1, thereby playing a role in host defense against pathogens. May also act as a transcription regulator via its interaction with RARB.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           ++ AA AGN D    L+ +D  L+++ D+  +  T LHIAA     +F + ++       
Sbjct: 504 IHAAASAGNYDVGELLLNKDINLLEKADKNGY--TPLHIAADSNKNDFVMFLIGNNADVN 561

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLT 140
            +      +PLHLA +   T +   LID+    +  Q + G TPLH    +       L 
Sbjct: 562 VRTKSDLFTPLHLAARRDLTDVTQTLIDITEIDLNAQDKSGFTPLHLSISSTSETAAILI 621

Query: 141 ACPKSILQVTIRKE-TALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
               +++ +  +   T L++A   + L V K++ G   Y+N  D
Sbjct: 622 RNTNAVINIKSKVGLTPLHLATLQNNLSVSKLLAGKGAYLNDGD 665

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
357517641	450	Ankyrin repeat protein [Medicago truncat	0.933	0.624	0.409	3e-60
356514663	377	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.883	0.705	0.4	6e-57
357456647	634	Ankyrin repeat-containing protein [Medic	0.910	0.432	0.373	3e-56
356514671	399	PREDICTED: ankyrin-3-like [Glycine max]	0.877	0.661	0.397	4e-56
356514711	418	PREDICTED: ankyrin repeat-containing pro	0.930	0.669	0.409	6e-56
356545491	452	PREDICTED: death-associated protein kina	0.946	0.630	0.371	5e-55
357465949	427	Ankyrin repeat domain-containing protein	0.850	0.599	0.386	7e-55
357517511	447	Ankyrin repeat protein [Medicago truncat	0.916	0.617	0.358	6e-54
356514709	583	PREDICTED: uncharacterized protein LOC10	0.920	0.475	0.402	5e-53
357515201	438	Ankyrin repeat-containing protein [Medic	0.930	0.639	0.369	2e-52

>gi|357517641|ref|XP_003629109.1| Ankyrin repeat protein [Medicago truncatula] gi|355523131|gb|AET03585.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/327 (40%), Positives = 197/327 (60%), Gaps = 46/327 (14%)

Query: 18  DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
           D +L  AAQ G+++ LY LI ED Y+++ ID +PFV+T LHIAASMGHV FA EIMRLKP
Sbjct: 8   DYKLKVAAQEGDINLLYTLIEEDPYVLEYIDLIPFVETPLHIAASMGHVQFATEIMRLKP 67

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLL 135
           SFA K NQ G SP+HLALQN+   MVLR +D+++ LVR++G+EG+TPLH   ++  +DLL
Sbjct: 68  SFAWKLNQQGFSPIHLALQNNQKSMVLRFVDMNKELVRIKGKEGLTPLHLACQSGEIDLL 127

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRK 188
             FL  CP SI  VT+R ETAL++A KN+  + L V++GWL+   +         ++N K
Sbjct: 128 ANFLFVCPNSIEDVTVRGETALHIAVKNEHYESLHVLVGWLKTTRQRGAREFEKLVLNYK 187

Query: 189 DDEGSILLHIS---------------------------------ISRKLESTVRNFGGRE 215
           D++G+ +LHIS                                  S +++  + + G + 
Sbjct: 188 DEKGNTVLHISALNNDLKALRLLVKTKINLNAKNSENSTALDIAASSEIKGILLSAGAKP 247

Query: 216 GSSLATV-EIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALT 274
            S +  V ++ D L+  +    K+L++  R    I++E RNA L+VA LI TAT+Q+AL+
Sbjct: 248 SSKVKDVSKLEDKLRSNVTILDKMLIYILRIRKDISEEQRNAFLIVATLIATATYQSALS 307

Query: 275 PPQDLWGNNSNNTDFATNVA-ATSINN 300
           PP  ++  N+   D+  NV   TS+N+
Sbjct: 308 PPGGVYQGNAG--DYNNNVKNNTSLNS 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514663|ref|XP_003526023.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 191/310 (61%), Gaps = 44/310 (14%)

Query: 15  SRTDQ-RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIM 73
           +R D+ R+N AAQ G++D LY +I E+ ++++ ID +PFVDT LH+AAS+GH+ F  E+M
Sbjct: 25  TREDRSRVNLAAQEGDIDGLYTVIQENPHVLEDIDSIPFVDTPLHVAASVGHLRFVTEVM 84

Query: 74  RLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--N 131
           RLKPSFA KQN  G +P+HLALQ+ H  +VLRL+ ++ +LVR +GR+G TPLH  ++   
Sbjct: 85  RLKPSFAWKQNPEGLTPIHLALQHGHDNVVLRLVSINNDLVRAKGRKGRTPLHLASKKGE 144

Query: 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVN-------KDDI 184
           +DLL KFL ACP  I  VT++ ETAL++A +  + + L+V++GWLR +        +   
Sbjct: 145 IDLLTKFLLACPNCIEDVTVKSETALHIAVRCGQFEALQVLVGWLRRLPHKGARDLERTT 204

Query: 185 INRKDDEGSILLHISI-------------------SRKLEST----------VRN----F 211
           +N +D+EG+ +LHIS                    ++ LE++          +RN     
Sbjct: 205 LNWEDEEGNTILHISSRENNLQALQLLLKTKVDLKAKNLENSTALDVVTSAEIRNALVKA 264

Query: 212 GGREGSSLATVE-IADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQ 270
           G ++GSS+     +AD L+  +    K+ +F  R    IT++ R A L+VA LI TAT+Q
Sbjct: 265 GAKQGSSVTNAPTLADKLRWNITLMGKITIFVLRIRSDITEDQRQAFLIVAALIATATYQ 324

Query: 271 AALTPPQDLW 280
           +AL+PP  ++
Sbjct: 325 SALSPPGGVF 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456647|ref|XP_003598604.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355487652|gb|AES68855.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 193/332 (58%), Gaps = 58/332 (17%)

Query: 20  RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF 79
           RLN AA+AG++D LY +I +D ++++ ID +PFV+T LHIAASMGH+ FA EIM+LKPSF
Sbjct: 9   RLNGAAEAGDIDLLYTVIQDDPFILEMIDLIPFVETPLHIAASMGHLQFASEIMKLKPSF 68

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLLYK 137
           A K NQ G SP+HLA+QN+   MV R ++ +++LVRV+GR G+TPLH+ ++   V+LL  
Sbjct: 69  AWKLNQQGFSPIHLAMQNNQNSMVTRFVNFNKDLVRVEGRNGITPLHFASQIGEVELLAN 128

Query: 138 FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKD--------DIINRKD 189
           FL ACP+SI  +T+R ETAL++A  N++ + L+V+LGWL+  NK          I+N++D
Sbjct: 129 FLFACPESIEYLTVRFETALHIAVMNEQYEALQVLLGWLK-TNKQRGADLLKYKILNQED 187

Query: 190 DEGSILLHIS--------------------------------------------ISRKLE 205
           + G+ + HIS                                            ++R+++
Sbjct: 188 ENGNTIFHISALYSEPQALQLLIKTFCQKNKFLKKTRINLCAKNLENKTSLDMAVTREIK 247

Query: 206 STVRNFGGREGSSLATVE-IADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILI 264
           S + + G + G  +     +A  LK        + L+       I++E RN  L+VA L+
Sbjct: 248 SILSSVGAKPGLEVTNAPTLAHKLKSNTTLMSSMFLYIVGLRNDISEEQRNTWLIVATLV 307

Query: 265 TTATFQAALTPPQDLWGNNSNNTDFATNVAAT 296
            TATFQ+A++PP  ++    N +D + N+ +T
Sbjct: 308 ATATFQSAMSPPGGVY--QVNASDSSLNITST 337

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514671|ref|XP_003526027.1| PREDICTED: ankyrin-3-like [Glycine max]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 187/307 (60%), Gaps = 43/307 (14%)

Query: 13  IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
           + + +D +L  AAQ G+++ LY +I ED  +++  D + FV+T LHIA+S G++ FA EI
Sbjct: 5   MNTTSDNKLKVAAQEGDINLLYTVIEEDPQVLEHNDLISFVETPLHIASSCGNIGFATEI 64

Query: 73  MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE-- 130
           MRLKPS A K NQ G +P+HLA+Q+SH +MV RL+D+++ LVR +GREG+TPLH+ ++  
Sbjct: 65  MRLKPSLAWKLNQQGFTPIHLAMQHSHKRMVHRLVDINKELVRAKGREGLTPLHFASQIG 124

Query: 131 NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD------- 183
            +DLL  FL ACP SI  VTIR ETAL++A +  + + L++++GWL+   + +       
Sbjct: 125 EIDLLANFLLACPDSIEDVTIRGETALHIAVRYRQYEALQLLVGWLKGTCQKNAMQIEKT 184

Query: 184 IINRKDDEGSILLHIS------------ISRKLESTVRNF-------------------- 211
           I+N KD+EG+ +LH+S            +  K++  V+N                     
Sbjct: 185 ILNWKDEEGNTILHVSALMNDSKVLQLLLKTKVDLKVKNLENSTALDVAASAEIKNALVR 244

Query: 212 -GGREGSSLATVE-IADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATF 269
            G + GSS+     +AD L+  +    K+++F  R    IT++ R A LVVA LI TAT+
Sbjct: 245 AGAKHGSSVTNAPTLADKLRWNITLMGKIIIFVLRIRRDITEDQRQAFLVVAALIATATY 304

Query: 270 QAALTPP 276
           Q+AL+PP
Sbjct: 305 QSALSPP 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514711|ref|XP_003526047.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 30/310 (9%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L  AA+  N+D LY+ I +D  +++ ID +PFV+T LH+AA++GH  FA EIM LKPSFA
Sbjct: 6   LKVAAEGNNIDGLYQEIQQDPRILESIDSIPFVETPLHVAATLGHFEFATEIMTLKPSFA 65

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKF 138
           +K N  G +P+HLALQ +H +MVLRL++++++LVRV+GREG TPLH  ++    +LL+KF
Sbjct: 66  QKLNPEGFTPIHLALQCNHDEMVLRLVEMNKDLVRVKGREGFTPLHLASQENKTELLHKF 125

Query: 139 LTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRKDDE 191
           L ACP SI  VT R ETAL++A K+   ++L+V+  WL+  ++ D       ++N KD +
Sbjct: 126 LKACPDSIEDVTARSETALHIAVKHGHYEILQVLFRWLKRNSRKDSLKFIRTMLNWKDQK 185

Query: 192 GSILLHI--------SISRKLESTVRNFGGREGSSLATVEIADYLKRGLI---------- 233
           G+ ++H+        ++S  L     +    EG + + +  +D++K  LI          
Sbjct: 186 GNTVVHVAALNDHIEAVSLLLTMVDLDAKNSEGKTASDIASSDHMKSILIKDLGFFESLA 245

Query: 234 -WRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATN 292
             R K   FF R    +T+E RNA LVVA LI TAT+QAAL+PP  L+ ++    +  ++
Sbjct: 246 LLRNKFRNFFLRFRRYMTEEERNAYLVVAALIATATYQAALSPPGGLYPSDVGTNNNTSH 305

Query: 293 VAAT--SINN 300
           V A+  SIN+
Sbjct: 306 VVASTHSIND 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545491|ref|XP_003541175.1| PREDICTED: death-associated protein kinase 1-like [Glycine max]

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/334 (37%), Positives = 197/334 (58%), Gaps = 49/334 (14%)

Query: 17  TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK 76
           +D +L  AAQ G++  LY LI ED +++D +D  PF +T LHI A +GH+ FA EIMRLK
Sbjct: 4   SDDKLKVAAQEGDISLLYTLIQEDLHVLDHMDLTPFAETPLHIVACVGHLQFATEIMRLK 63

Query: 77  PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDL 134
           PSFA K NQ G +P+HL +Q+   +MVLR +D++++LVRV+GREG+TP H+ ++   +DL
Sbjct: 64  PSFASKLNQQGFTPIHLDMQHGQKRMVLRFVDINKDLVRVKGREGLTPFHFASQKGEIDL 123

Query: 135 LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNK-------DDIINR 187
           L  FL ACP SI  VT+R ETAL++A ++ + +  +V++GWL+   +         I+N 
Sbjct: 124 LANFLLACPDSIEDVTVRCETALHIALRSQQYEAFRVLVGWLQRTRQRGATTLEKTILNW 183

Query: 188 KDDEGSILLHIS------------ISRKLESTVRNF---------------------GGR 214
           +++EG+ +LH+S            +  K++   +N+                     G +
Sbjct: 184 RNEEGNTILHVSALMNDSKAIRLLVKTKVDLNAKNWENLTALDIAANAEVKIVLAKAGAK 243

Query: 215 EGSSLATVE-IADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAAL 273
            GSS+       D L+  +   +K+++F  R    IT++ RNA L+VA L+ TAT+Q+AL
Sbjct: 244 HGSSITNAPTFPDKLRSNITLMEKIIIFILRIRRDITEDQRNAFLIVAALVATATYQSAL 303

Query: 274 TPPQDLW-----GNNSNNT-DFATNVAATSINNN 301
           +PP  ++      NN+N+T    + VA T+ + N
Sbjct: 304 SPPGGVYQANAGDNNTNSTPSLNSTVATTATHGN 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465949|ref|XP_003603259.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355492307|gb|AES73510.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 178/305 (58%), Gaps = 49/305 (16%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           LN AAQ G++D L++LI  D Y++++ + +PFVDT LHIAA+ GH +FA EIMRLKPSFA
Sbjct: 5   LNAAAQMGDIDLLFKLIQIDPYILERYNLIPFVDTPLHIAAASGHTSFATEIMRLKPSFA 64

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLLYKF 138
            K N+YG SP+HLALQN + +MV R +D++++LVRV+GREG+TPLH   +  N DL+ KF
Sbjct: 65  WKLNEYGLSPIHLALQNKYHRMVCRFVDINKDLVRVKGREGLTPLHIATQTGNFDLVVKF 124

Query: 139 LTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLR-------YVNKDDIINRKDDE 191
           L  CP  I  VT+R ETAL++A K  +  VL+++LGWLR       +  +  ++N +D+ 
Sbjct: 125 LFVCPGCIEDVTVRSETALHIAVKYKQFHVLEILLGWLRRTCHRRSHHKEKRVLNWEDEA 184

Query: 192 GSILLHISI----------------------------------------SRKLESTVRNF 211
           G+ +LH+S+                                        S +++  +   
Sbjct: 185 GNTILHMSVLNSFPQAVGLLIDSNIDINAKNLDEQTALDIVEQIQSQVYSAEMKDMLIKA 244

Query: 212 GGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQA 271
           G   G SLA   + + L+  + + +++ +   R    I+ + RNA LVVAIL  T+ ++A
Sbjct: 245 GALHGFSLAPTPLHEELQSKITFNERIAICVTRLRRRISSDTRNALLVVAILFATSAYEA 304

Query: 272 ALTPP 276
            L PP
Sbjct: 305 TLNPP 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517511|ref|XP_003629044.1| Ankyrin repeat protein [Medicago truncatula] gi|355523066|gb|AET03520.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 193/321 (60%), Gaps = 45/321 (14%)

Query: 19  QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
           +RLN AA+AG++D LY +I +D Y+++ ID +PFV+T LHIAASMGH++FA+EIM LKPS
Sbjct: 8   ERLNAAAEAGDIDLLYTVIQDDPYILEHIDSIPFVETPLHIAASMGHIDFAIEIMNLKPS 67

Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLY 136
           FA K N  G SP+HLA+Q +  +MV   + ++++LVRV+GREG+TPLH+  +N  V +L 
Sbjct: 68  FALKLNPQGFSPIHLAMQKNKKRMVYHFVSINKDLVRVRGREGITPLHFACQNGEVQMLA 127

Query: 137 KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNK-------DDIINRKD 189
            FL  CP+SI  +T+R+ETAL+++ KN++ + L+V++ WL+   +       + I+N++D
Sbjct: 128 YFLRLCPESIEYLTVRRETALHISVKNEQYEALQVLVSWLKKNTQRGAQKLENKILNQRD 187

Query: 190 DEGSILLHIS------------ISRKLESTVRNFGGREGSSLATV--------------- 222
              + +LHIS            +S  ++   +N   +    +A+                
Sbjct: 188 KASNTILHISALSSDPQALLLLVSTGIDLKAKNSENKTALDIASTPEIKSILLSVGTKPS 247

Query: 223 -EIADY------LKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTP 275
            E+ DY      ++  +     V ++  R    I++E RN  L+VA L+ TA +Q+ L+P
Sbjct: 248 SEVTDYPTCDHRIRSKITTIGAVTIYINRIRGDISEEQRNTWLIVATLVATAIYQSGLSP 307

Query: 276 PQDLWGNNSNNTDFATNVAAT 296
           P  ++  ++ +T+  TN+ ++
Sbjct: 308 PGGIYQVSAGDTN--TNITSS 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514709|ref|XP_003526046.1| PREDICTED: uncharacterized protein LOC100776039 [Glycine max]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 36/313 (11%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L  AA   N+D LY+ I +D  +++ ID +PFV+T +H+AAS+GH  FA EIM LKPSFA
Sbjct: 6   LKVAAVGNNIDGLYQEIQQDPRILESIDSIPFVETPMHVAASLGHFEFATEIMTLKPSFA 65

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKF 138
           +K N  G +P+HLALQ +H +MVLRL++++++LVRV+GREG T LH  ++    +LL KF
Sbjct: 66  QKLNPEGFTPIHLALQCNHDEMVLRLVEMNKDLVRVKGREGFTALHLASQENKTELLDKF 125

Query: 139 LTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRKDDE 191
           L ACP SI  VT R ETAL++A K+   + L+V+  WL   ++ D       +++ KD +
Sbjct: 126 LKACPDSIEDVTARSETALHIAVKHGHYETLQVLFRWLMRNSRKDSQKFIRTMLDWKDQK 185

Query: 192 GSILLHIS--------ISRKLESTVRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFY 243
           G+ +LH++        +S  L     +    EG + + +  +D++K  LI   K L FF 
Sbjct: 186 GNTVLHVAALYDHIEAVSLLLTMVDLDAKNSEGKTASDIASSDHMKSILI---KDLGFFE 242

Query: 244 RSSL--------------SITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDF 289
             +L               +T+E RNA LVVA LI TAT+QAAL+PP  L+ ++    + 
Sbjct: 243 SLALLRNKFRNFFLRFRRYMTEEERNAYLVVAALIATATYQAALSPPGGLYPSDVGTNNN 302

Query: 290 ATNVAAT--SINN 300
            ++V A+  SIN+
Sbjct: 303 TSHVVASTHSIND 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515201|ref|XP_003627889.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355521911|gb|AET02365.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 192/330 (58%), Gaps = 50/330 (15%)

Query: 20  RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF 79
           RL  AA  G++D LY +I +D  +++ ID + FV+T LH AASMGH+ FA E+M LKPSF
Sbjct: 13  RLKAAALTGDIDLLYTVIQDDPSILEHIDLITFVETPLHTAASMGHLRFATEVMNLKPSF 72

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYK 137
           A K +  G SP+HLALQN+   MV R +D++++LVRV+GREG+TPLH+ ++N  VDLL  
Sbjct: 73  AWKLDLQGFSPIHLALQNNQKPMVYRFVDINKDLVRVKGREGLTPLHFASQNGEVDLLVC 132

Query: 138 FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNK-------DDIINRKDD 190
           FL  CP+SI  +T+R+ETAL++A KN++ + L+V++GWL+   K       ++I+N++D+
Sbjct: 133 FLLLCPESIEYLTVRQETALHIAVKNEQFEALQVLVGWLKENCKRGAENLENNILNQRDE 192

Query: 191 EGSILLHIS------------ISRKLESTVRNFGGREGSSLA----------------TV 222
           +G+ +LHIS            +S  +    +N   +    +                 ++
Sbjct: 193 DGNTILHISALSSELQALQLLVSTGINLKEKNLENKTALDITSTPEMKSILLSVGAKHSI 252

Query: 223 EIADYLKRGLIWR---------QKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAAL 273
           E+AD   R    R          K++    R+   +T+E RN  L+VA LI TA +Q+ L
Sbjct: 253 EVADAPTRAHRLRLMATTKTMSNKLVSEITRTRSDMTEEQRNIWLIVATLIATAMYQSVL 312

Query: 274 TPPQDLW----GNNSNNTDFATNVAATSIN 299
           +PP  ++    G+N+ N   + +  +T  N
Sbjct: 313 SPPGGVYQISAGDNNLNITSSNSTISTPKN 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.604	0.408	0.455	1.2e-42
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.604	0.398	0.474	1.7e-41
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.604	0.422	0.450	1.2e-40
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.637	0.450	0.432	4.2e-40
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.637	0.440	0.417	4.9e-37
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.604	0.412	0.397	4e-35
TAIR|locus:2123406	406	AT4G11000 "AT4G11000" [Arabido	0.282	0.209	0.564	1.4e-19
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.435	0.296	0.274	8.1e-11
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.461	0.261	0.328	2.9e-09
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.514	0.289	0.247	8.1e-09

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 87/191 (45%), Positives = 131/191 (68%)

Query:    18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
             D RL  A Q G++D LY  I E+ Y+++ ID +PF++T LHIA++ G+++FA+E+M LKP
Sbjct:     2 DPRLIVATQIGSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLKP 61

Query:    78 SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLL 135
             SFARK N YG SPLHLA++   T++VL L+ VD +LVR++GREG+TP H V      DL+
Sbjct:    62 SFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDLM 121

Query:   136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRK 188
              +FL ACP  I    +  ETAL++A  ND+ + L+V+LGW++ + + D        +N++
Sbjct:   122 TEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKR 181

Query:   189 DDEGSILLHIS 199
             D +G+  LHI+
Sbjct:   182 DQDGNTALHIA 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 93/196 (47%), Positives = 132/196 (67%)

Query:    18 DQR-LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK 76
             DQR L  AA++GN+D LYELI ED Y++D+ D VPFV+T LH+AA  G   FA+E+M LK
Sbjct:     2 DQRSLEAAAKSGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAVNGKTEFAMEMMNLK 61

Query:    77 PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--ENVDL 134
             PSFARK N  G +PLHLA+++ H  +VL ++ VD +LVR++GR G+TPL      + +DL
Sbjct:    62 PSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKIDL 121

Query:   135 LYKFLTACPKSILQVTIRKETALYVAAKN-DK---LKVLKVMLGW-LRYVNKDD------ 183
             + +F   CP+SI+   +  E AL++A  N D+   L VLKV++GW LR   KD       
Sbjct:   122 MSEFFLGCPESIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDAEWIETR 181

Query:   184 IINRKDDEGSILLHIS 199
             +INR+D +G+  LH++
Sbjct:   182 VINRRDKDGNTPLHLA 197

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 86/191 (45%), Positives = 128/191 (67%)

Query:    18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
             D+RL     +GNVDALY LI +D Y++  ID +PFV T LH A+S G  + A+E+M LKP
Sbjct:     2 DRRLLWVTDSGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLKP 61

Query:    78 SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVD--LL 135
             +FA+K N  G SPLHLA++N   Q+ L L+ ++ +LV V GR+G+TPLH V +  D  LL
Sbjct:    62 TFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLL 121

Query:   136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRK 188
              +FL ACP+SI    +  ETAL++A  ND+ + LKV+ GW+  ++K D       ++N++
Sbjct:   122 TEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNKR 181

Query:   189 DDEGSILLHIS 199
             D +G+ +LH++
Sbjct:   182 DRDGNTILHLA 192

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 86/199 (43%), Positives = 132/199 (66%)

Query:    18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
             D +L    Q+G+VD LY LI     ++ ++D +P + T LH A+S G ++ A+E+M LKP
Sbjct:     2 DSKLLLVTQSGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILKP 61

Query:    78 SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLL 135
             SFA+K N+YG SPLHLA++N   ++ L L+ VD +LVR++GR G+TPLH VA+  +VDLL
Sbjct:    62 SFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLL 121

Query:   136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYV-NKDDI----INRKDD 190
               FL ACP+SI  V +  ET L++   NDK + LKV+ GW++ + + DD+    +NR+D 
Sbjct:   122 TDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDR 181

Query:   191 EGSILLHISISRKLESTVR 209
              G+ +LH++     +  V+
Sbjct:   182 GGNTVLHLAAYENNDKVVK 200

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 84/201 (41%), Positives = 128/201 (63%)

Query:    18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
             D RL  AA+ G+++  Y LI E+ Y++D I+ VPFV+T LH+AA+  ++ FA+E++ LKP
Sbjct:     2 DPRLQHAAETGSINDFYALIEENPYILDNINAVPFVNTPLHVAAASDNIPFAMEMLNLKP 61

Query:    78 SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--ENVDLL 135
             SFARK N  G SPLHLA++  H + +  L+  D  LVRV+GREG+TP H +A   +V+L+
Sbjct:    62 SFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRGDVNLV 121

Query:   136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWL-RYVNKD------DIINRK 188
              + L  CP  I  V++    AL++A  ND+ ++L+V+ GWL R   KD      D +NRK
Sbjct:   122 AECLKYCPVCIQDVSVNGHNALHLAVMNDRFEILQVLTGWLQRMSQKDSASTESDFLNRK 181

Query:   189 DDEGSILLHISISRKLESTVR 209
             D   +  LH++  ++    V+
Sbjct:   182 DLAHNTPLHLAAYKEDHQAVK 202

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 76/191 (39%), Positives = 125/191 (65%)

Query:    18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
             D RL +AA++G+++ LY LI E+ Y+++ ID VPFV T LH+AA  G++ FA+E++ LKP
Sbjct:     2 DLRLQQAAESGSINELYALIDENPYILENIDAVPFVSTPLHVAAVFGNIEFAMEMLNLKP 61

Query:    78 SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY--VAENVDLL 135
             SFARK N  G SPLHLA++   +  V  ++  D  L RV+GR GVTP H   +  + DL+
Sbjct:    62 SFARKLNTSGYSPLHLAVEKEQSDFVSHMLWHDGGLSRVKGRNGVTPFHLLVIRGDDDLV 121

Query:   136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-------IINRK 188
              + L   P+ I  V + ++ AL++A  ND+ +VL+V+ GW++ +++ D       ++N++
Sbjct:   122 AECLITSPECIEDVNVDRQNALHLAVMNDRFEVLQVLTGWIQRMSQKDAYYIENRVLNKR 181

Query:   189 DDEGSILLHIS 199
             D + +  LH++
Sbjct:   182 DFDFNTALHLA 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123406 AT4G11000 "AT4G11000" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 48/85 (56%), Positives = 59/85 (69%)

Query:    20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF 79
             RL   AQ G+++ LYELI ED  ++D  D+V F +T LHIAA  G  +FA+E+M LKPS 
Sbjct:    41 RLKTVAQVGDIERLYELIAEDPNILDHFDKVSFCETPLHIAAEKGQTHFAMELMTLKPSL 100

Query:    80 ARKQNQYGCSPLHLALQNSHTQMVL 104
             A K N  G SPLHLALQN+H Q VL
Sbjct:   101 ALKLNVSGFSPLHLALQNNHIQTVL 125

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 37/135 (27%), Positives = 77/135 (57%)

Query:    71 EIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
             +I+R +  F   +N  G SPLH A      + V   + V++ L R++ R+G TPLH    
Sbjct:    33 KILRQRSVFDLDKN--GFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATM 90

Query:   131 N--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK 188
                +D++ + + +C   +   T++ +TAL++A  + +++ +  ++  +   N+ D++N+K
Sbjct:    91 RGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKK 150

Query:   189 DDEGSILLHISISRK 203
             D++G+  LH++  RK
Sbjct:   151 DEQGNTALHLATWRK 165

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 49/149 (32%), Positives = 78/149 (52%)

Query:    58 HIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQ 117
             H+AA  GH+    E++RL P   R  +    SPL+ A    H ++V  ++DVD +   + 
Sbjct:    99 HVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIV 158

Query:   118 GREGVTPLHYVAENVDLL--YKFLTACPKSILQVTIRK-ETALYVAAKNDKLKVLKVMLG 174
              + G T LH  A    LL   K L     +I+ V  +K +TAL++A K   L+V++ +L 
Sbjct:   159 RKNGKTSLH-TAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQ 217

Query:   175 WLRYVNKDDIINRKDDEGSILLHISISRK 203
                Y     I+N +D +G+  LHI+ +RK
Sbjct:   218 -ADYT----ILNERDRKGNTALHIA-TRK 240

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
 Identities = 43/174 (24%), Positives = 78/174 (44%)

Query:    44 IDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMV 103
             +++ D+  F  T LH+A  +G+     +I+ + PS     N    +PLHLA +  HT ++
Sbjct:    19 LEEQDE-SFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSIL 77

Query:   104 LRLIDV--------------DRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSIL 147
             L +++               D  L  +  ++G TPLH    N  V+ L  F+   P S  
Sbjct:    78 LLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFD 137

Query:   148 QVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISIS 201
              VT++    ++  A   K   ++  +   +  N   ++   D EG+ +LH + S
Sbjct:   138 SVTLQTSETVFHLAARHKK--MEAFIFMAKNANLRRLLYELDGEGNTVLHAAAS 189

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LH+AAS GH+     ++         ++  G +PLHLA +N H ++V  L++   + V  
Sbjct: 11  LHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNA 68

Query: 117 QGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
           + ++G TPLH  A N +L + K L      +        T L++AAKN  L+V+K++L
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 83  QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTA 141
           +++ G +PLHLA  N H ++V  L++   + V  +  +G TPLH  A+N  L + K L  
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 142 CPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISIS 201
               +        T L++AA+N  L V+K++L           +N +D +G   LH++  
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLL------KHGADVNARDKDGRTPLHLAAK 115

Query: 202 RKLESTVR 209
                 V+
Sbjct: 116 NGHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ AA  G+++ +  L+ E+   ++  D      T LH+AA  GH+     ++       
Sbjct: 11  LHLAASNGHLEVVKLLL-ENGADVNAKDN--DGRTPLHLAAKNGHLEIVKLLLEKGAD-V 66

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL 134
             +++ G +PLHLA +N +  +V  L+    + V  + ++G TPLH  A+N  L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 251 DENRNAPLVVAILITTATFQAALTPPQDLWGNNSNN 286
           ++ RN+ LVVA LI T TF A  TPP   W ++  +
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGH 40

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTH--LHIAASMGHVNFALEIMRLKPS 78
           L+ AA+ GN++ +         L+++   V   DT   LH+AA  G++     ++     
Sbjct: 1   LHLAAKNGNLELVK-------LLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD 53

Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLID 108
               +++ G + LHLA +N + ++V  L++
Sbjct: 54  V-NAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 36/117 (30%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           LH+AA  G++     ++               + LHLA +N + ++V  L++   + V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 117 QGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
           + ++G T LH                                 AA+N  L+++K++L
Sbjct: 57  KDKDGNTALHL--------------------------------AARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
            T LH AA  G +   ++ +  K     + ++ G + LH+A +N + +++  L+
Sbjct: 2   RTALHKAAISGRLE-LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.98
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PF13962	113	PGG: Domain of unknown function	99.24
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.85
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.75
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.7
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.68
PF13606	30	Ank_3: Ankyrin repeat	98.66
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.57
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.14
KOG0511	516	consensus Ankyrin repeat protein [General function	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.06
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.98
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.98
KOG2384	223	consensus Major histocompatibility complex protein	97.77
KOG2384	223	consensus Major histocompatibility complex protein	97.62
KOG0511	516	consensus Ankyrin repeat protein [General function	97.59
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
KOG2505	591	consensus Ankyrin repeat protein [General function	96.53
KOG2505	591	consensus Ankyrin repeat protein [General function	96.49
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.97
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.12
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.04
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.29
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.78

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-39  Score=242.65  Aligned_cols=202  Identities=25%  Similarity=0.250  Sum_probs=178.8

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      ..++.+.+++..-..-|+.+++..+ ..+.+.++  +|+||||+||+.|+.+++..|++.-...++.+|..||||||.|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dq--D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQ--DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccc--cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            3466777888888888999998887 44555554  59999999999999999999998655556788999999999999


Q ss_pred             HCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      ..|+.++|+.|+.+ |++ ++..++.|.|+||||+.. ..++..+|++.|+.++.+|..|+||||.|+..|..+++++|+
T Consensus        81 s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            99999999999999 787 999999999999999999 889999999999999999999999999999999999999999


Q ss_pred             HhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhhhh
Q 022200          174 GWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEIADYL  228 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~  228 (301)
                      .+      ++.+|.+|+.|+||||+|...       +|+++     .+|++| ||+.+++.+..+..
T Consensus       160 ~~------~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~l~~al  219 (226)
T KOG4412|consen  160 SQ------GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNELLEAL  219 (226)
T ss_pred             hc------CCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHHHHHHH
Confidence            97      899999999999999999333       67776     889988 99999977665544

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=273.50  Aligned_cols=233  Identities=17%  Similarity=0.155  Sum_probs=200.5

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--------------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--------------   79 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------   79 (301)
                      ..++.||||.|++.|+.++|++|++.|++++....   .|.||||+|+..|+.+++++|++.|++.              
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~---~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~  108 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINT---KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK  108 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence            35688999999999999999999999998765443   4899999999999999999999887542              


Q ss_pred             --------hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc
Q 022200           80 --------ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT  150 (301)
Q Consensus        80 --------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d  150 (301)
                              ++.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..+
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~  187 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD  187 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence                    355788999999999999999999999999999 999999999999999999 8899999999999999999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH------HHHhh----hhhCCCCchhhhh
Q 022200          151 IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR------KLEST----VRNFGGREGSSLA  220 (301)
Q Consensus       151 ~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~------~Ll~~----~~n~~g~tpl~~a  220 (301)
                      ..|.||||+|+..|+.+++++|+++      |++++.++..|.||||+|+..      +|+..    .+|.+|+||||+|
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll~~------g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLIDH------GNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC------CCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999996      999999999999999999987      44433    7889999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200          221 TVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL  263 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l  263 (301)
                      +...........++.       .+......+..+.|++++|..
T Consensus       262 ~~~~~~~~iv~~Ll~-------~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        262 INPPCDIDIIDILLY-------HKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             HhcCCcHHHHHHHHH-------CcCCCCCCCCCCCCHHHHHHH
Confidence            864333333333333       455556667788899888864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-36  Score=228.27  Aligned_cols=177  Identities=23%  Similarity=0.230  Sum_probs=162.2

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHH-cChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh-CCchhhhcCCCCCcHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIW-EDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL-KPSFARKQNQYGCSPL   91 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL   91 (301)
                      +.++.+|||+||..|+.+++++|+. .+..++++++   .|+||||+||..|+.++|+.|+.+ ++++ +..+..|+|||
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd---aGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~L  110 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD---AGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCL  110 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc---cCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCccee
Confidence            3478899999999999999999995 4455555544   499999999999999999999999 5555 88899999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK  170 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~  170 (301)
                      |||+..|..+++++|++.|+. ++.+|..|.||||-|+.. ...++++|+..|+.+|..|..|+||||.|...|+.++..
T Consensus       111 HyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~  189 (226)
T KOG4412|consen  111 HYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAV  189 (226)
T ss_pred             hhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHH
Confidence            999999999999999999998 999999999999999998 889999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|++.      |++++..|++| ||+-.|+-.
T Consensus       190 lLV~~------gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  190 LLVRA------GADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HHHHh------ccceeeccccC-chHHHHHHH
Confidence            99996      99999999999 999888765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3e-34  Score=260.44  Aligned_cols=173  Identities=14%  Similarity=0.107  Sum_probs=81.6

Q ss_pred             CHHHHHHHH--hCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           18 DQRLNEAAQ--AGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        18 ~~~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      .++||.++.  .++.++|+.|++.|++++....   .|+||||+|+..|+.++++.|+++|+++ +.+|..|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~---~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDD---DGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCC---CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHH
Confidence            344444432  2234455555555554433322   2555555555555555555555554443 444555555555554


Q ss_pred             HCC--CHHHHHHHhhcCCccce-ecCCCCCchhHHHHhcHHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC--HHHHH
Q 022200           96 QNS--HTQMVLRLIDVDRNLVR-VQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDK--LKVLK  170 (301)
Q Consensus        96 ~~~--~~~~v~~Ll~~~~~~~~-~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~--~~~~~  170 (301)
                      ..+  ..+++++|+++|++ ++ ..|..|.||||.|......++++|++.|++++.+|..|+||||+|+..++  .++++
T Consensus       114 ~~~~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAK-INNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HcCCchHHHHHHHHHcCCC-cccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            433  24455555555554 33 23445555554222223344444445555555555555555555444322  34455


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHH
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISIS  201 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~  201 (301)
                      +|++.      |++++.+|.+|+||||+|+.
T Consensus       193 ~Ll~~------Gadin~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        193 WMMKL------GISPSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             HHHHc------CCCCcccCCCCCCHHHHHHH
Confidence            55543      55555555555555555544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-34  Score=243.56  Aligned_cols=192  Identities=15%  Similarity=0.081  Sum_probs=170.1

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|+..|+.++++.|++.|++++..     +|+||||+|+..|+.++++.|++.++++ +.+|..|+||||
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~-----d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh   99 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL-----ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC-----CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            3577999999999999999999999999876432     3789999999999999999999998876 788999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCC-chhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHHHcCCHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGV-TPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~~  169 (301)
                      +|+..|+.+++++|++.|++ ++.++..|+ ||||+|+.. ..+++++|++.+.+.  .| ..|.||||+|+..|+.+++
T Consensus       100 ~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv  176 (284)
T PHA02791        100 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMM  176 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHH
Confidence            99999999999999999999 888888885 899999999 888889888876543  23 3589999999999999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcH-HHHHHHH-------HHHhh-----hhhCCCCchhhhh
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSIL-LHISISR-------KLEST-----VRNFGGREGSSLA  220 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tp-Lh~A~~~-------~Ll~~-----~~n~~g~tpl~~a  220 (301)
                      ++|+++      |++++.+|..|.|| ||+|+..       +|+++     .+|.+ .+|++.+
T Consensus       177 ~lLL~~------gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~-~~~l~~~  233 (284)
T PHA02791        177 ILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE-NVLLDDA  233 (284)
T ss_pred             HHHHHC------CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc-CccCCCH
Confidence            999997      99999999999987 9999998       77777     77774 4888766

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.4e-34  Score=254.08  Aligned_cols=195  Identities=22%  Similarity=0.234  Sum_probs=176.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHc-ChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           19 QRLNEAAQAGNVDALYELIWE-DAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      ..++.|++.|+++.|+.|++. |.+++..++   +|.|+||+||.+++.+++++|+++++++...-...+.||||||+++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~---~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDR---EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCc---CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            368999999999999999998 777766554   4999999999999999999999999988434337899999999999


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhh
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWL  176 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~  176 (301)
                      |+..+|.+|+++|++ ++.+|.+|.+|||.|++. +..++.+++.++++++.+|.+|+||||+|+.+|....++.||+. 
T Consensus       123 G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f-  200 (600)
T KOG0509|consen  123 GHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF-  200 (600)
T ss_pred             CcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh-
Confidence            999999999999999 999999999999999999 88888888999999999999999999999999998889999997 


Q ss_pred             hhcCccccccccc-CCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          177 RYVNKDDIINRKD-DEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       177 ~~~~~~~~~~~~d-~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                           ++.+...| ..|+||||+|+..       +|++.     ..|.+|+||+++|.+.
T Consensus       201 -----~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 -----GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             -----cccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence                 89999887 9999999999998       44444     7888999999999544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-34  Score=263.39  Aligned_cols=198  Identities=20%  Similarity=0.147  Sum_probs=172.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHH-----------------------
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALE-----------------------   71 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~-----------------------   71 (301)
                      ..+.+|||.|++.|+.++|+.|++.|++++....   .|+||||+||..|+.+++++                       
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~---~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDH---RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            3467899999999999999999999998865543   49999999998876654444                       


Q ss_pred             -----------------------------------------HHHhCCchhhhcCCC-CCcHHHHHHHCCCHHHHHHHhhc
Q 022200           72 -----------------------------------------IMRLKPSFARKQNQY-GCSPLHLALQNSHTQMVLRLIDV  109 (301)
Q Consensus        72 -----------------------------------------Ll~~~~~~~~~~~~~-g~tpLh~A~~~~~~~~v~~Ll~~  109 (301)
                                                               |+++|+++ +.++.. |.||||+|+..|+.+++++|++.
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~  190 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSY  190 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence                                                     44444443 455666 99999999999999999999999


Q ss_pred             CCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHc-CCHHHHHHHHHhhhhcCccccccc
Q 022200          110 DRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKN-DKLKVLKVMLGWLRYVNKDDIINR  187 (301)
Q Consensus       110 ~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~-g~~~~~~~Ll~~~~~~~~~~~~~~  187 (301)
                      |++ ++.+|..|.||||+|+.. ...++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++      |++++.
T Consensus       191 gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~------gadvn~  263 (477)
T PHA02878        191 GAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH------GVDVNA  263 (477)
T ss_pred             CCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc------CCCCCc
Confidence            999 999999999999999999 88999999999999999999999999999975 789999999996      999999


Q ss_pred             ccC-CCCcHHHHHHHH-----HHHhh-----hhhCCCCchhhhhhhh
Q 022200          188 KDD-EGSILLHISISR-----KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       188 ~d~-~g~tpLh~A~~~-----~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      ++. .|.||||+|+..     +|+++     .+|.+|+||+++|+..
T Consensus       264 ~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        264 KSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             cCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            886 899999999655     67777     8899999999999763

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=258.56  Aligned_cols=231  Identities=16%  Similarity=0.131  Sum_probs=196.2

Q ss_pred             ccCCCHHHHHHHHhC---CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC-CHHHHHHHHHhCCchhhhcCCCCCc
Q 022200           14 KSRTDQRLNEAAQAG---NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG-HVNFALEIMRLKPSFARKQNQYGCS   89 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t   89 (301)
                      +..+.||||.|+..|   +.++++.|++.|++++....   .|.||||+|+..| +.+++++|++.|+++ +.+|..|.|
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~---~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~t  119 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER---CGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRT  119 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            456889999999999   99999999999999876654   4999999999999 599999999999886 888999999


Q ss_pred             HHHHHH--HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhccccCCCcHHHHHHHc-
Q 022200           90 PLHLAL--QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQVTIRKETALYVAAKN-  163 (301)
Q Consensus        90 pLh~A~--~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~-  163 (301)
                      |||+|+  ..++.+++++|++.|++ ++.+|..|.||||+|+..   ..+++++|++.|++++..|..|.||||+++.. 
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence            999999  55689999999999999 999999999999999876   57889999999999999999999999999875 


Q ss_pred             -CCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH---------HHHhh-----hhhCCCCchhhhhhhhhhhhh
Q 022200          164 -DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR---------KLEST-----VRNFGGREGSSLATVEIADYL  228 (301)
Q Consensus       164 -g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~---------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~  228 (301)
                       ++.+++++|+++      |++++.+|..|+||||+|+..         .|++.     .+|..|+||||+|+..... .
T Consensus       199 ~~~~~i~~~Ll~~------g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~-~  271 (471)
T PHA03095        199 KPRARIVRELIRA------GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNP-R  271 (471)
T ss_pred             CCcHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-H
Confidence             778999999986      999999999999999999975         34444     7889999999999765322 2


Q ss_pred             hhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200          229 KRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL  263 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l  263 (301)
                      ....++.       .+......+..+.|+++.|+.
T Consensus       272 ~v~~LL~-------~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        272 ACRRLIA-------LGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             HHHHHHH-------cCCCCcccCCCCCCHHHHHHH
Confidence            2333333       445555666778888888764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-33  Score=267.09  Aligned_cols=235  Identities=17%  Similarity=0.139  Sum_probs=184.1

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhc---------------------------------------------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQID---------------------------------------------   48 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------------------------------   48 (301)
                      +..|.||||+|++.|+.++|+.|++.|++++....                                             
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~  254 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLE  254 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHH
Confidence            45688999999999999999999999876532110                                             


Q ss_pred             --------------CCCCCChHHHHHHHcCCH-HHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC-CHHHHHHHhhcCCc
Q 022200           49 --------------QVPFVDTHLHIAASMGHV-NFALEIMRLKPSFARKQNQYGCSPLHLALQNS-HTQMVLRLIDVDRN  112 (301)
Q Consensus        49 --------------~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~-~~~~v~~Ll~~~~~  112 (301)
                                    ....|.||||+|+..|+. ++++.|++.++++ +.+|..|.||||+|+..| ..+++++|+..|++
T Consensus       255 ~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad  333 (682)
T PHA02876        255 TSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD  333 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence                          112477888888888775 4777777777665 677888888888888888 58888888888888


Q ss_pred             cceecCCCCCchhHHHHhc--HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccC
Q 022200          113 LVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD  190 (301)
Q Consensus       113 ~~~~~d~~g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~  190 (301)
                       ++..|..|.||||+|+..  ...++.+|++.|++++.+|..|.||||+|+..|+.+++++|+++      |++++..+.
T Consensus       334 -in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~------gad~~~~~~  406 (682)
T PHA02876        334 -VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDY------GADIEALSQ  406 (682)
T ss_pred             -CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCccccCC
Confidence             888888888999988875  67788888999999999999999999999999999999999986      899999999


Q ss_pred             CCCcHHHHHHHH--------HHHhh-----hhhCCCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhH
Q 022200          191 EGSILLHISISR--------KLEST-----VRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAP  257 (301)
Q Consensus       191 ~g~tpLh~A~~~--------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  257 (301)
                      .|.||||+|+..        .|++.     .+|.+|+||||+|+...........++.       .+......+..++|+
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~-------~Gad~n~~d~~g~tp  479 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD-------NGADVNAINIQNQYP  479 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH-------CCCCCCCCCCCCCCH
Confidence            999999999854        55555     7899999999999765433233333333       445555556777788


Q ss_pred             HHHHHH
Q 022200          258 LVVAIL  263 (301)
Q Consensus       258 l~va~l  263 (301)
                      +++|+.
T Consensus       480 l~~a~~  485 (682)
T PHA02876        480 LLIALE  485 (682)
T ss_pred             HHHHHH
Confidence            777653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.8e-33  Score=260.48  Aligned_cols=174  Identities=17%  Similarity=0.121  Sum_probs=152.9

Q ss_pred             ccCCCHHHHHHHHh--CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCC--HHHHHHHHHhCCchhhhcCCCCCc
Q 022200           14 KSRTDQRLNEAAQA--GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGH--VNFALEIMRLKPSFARKQNQYGCS   89 (301)
Q Consensus        14 ~~~~~~~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t   89 (301)
                      +..|.||||.|+..  ++.++++.|++.|++++....   .|.||||+|+..|+  .++++.|+++|+++ +.+|..|.|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~---~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~T  249 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN---HLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMS  249 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            45688999998754  688999999999999876544   49999999999995  58999999999886 888999999


Q ss_pred             HHHHH-------------------------------------HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           90 PLHLA-------------------------------------LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        90 pLh~A-------------------------------------~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |||+|                                     +..|+.+++++|++.|++ ++.+|..|+||||+|+.. 
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHh
Confidence            99975                                     345788999999999999 999999999999998753 


Q ss_pred             --HHHHHHHHHhCCcchhccccCCCcHHHHHHH--------------cCCHHHHHHHHHhhhhcCcccccccccCCCCcH
Q 022200          132 --VDLLYKFLTACPKSILQVTIRKETALYVAAK--------------NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL  195 (301)
Q Consensus       132 --~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~--------------~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tp  195 (301)
                        ..+++++|++.|++++.+|..|+||||+|+.              .++.+++++|+++      |++++.+|..|+||
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~------GADIn~kn~~G~TP  402 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL------GADITAVNCLGYTP  402 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC------CCCCCCcCCCCCCh
Confidence              6788999999999999999999999999875              3689999999996      99999999999999


Q ss_pred             HHH
Q 022200          196 LHI  198 (301)
Q Consensus       196 Lh~  198 (301)
                      ||.
T Consensus       403 Lh~  405 (764)
T PHA02716        403 LTS  405 (764)
T ss_pred             HHH
Confidence            994

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=250.78  Aligned_cols=226  Identities=20%  Similarity=0.154  Sum_probs=190.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ..|+.|+..|+++.++.|++.++......+.  .|.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~--~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVD--ETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            4789999999999999999876654333222  5899999999999999999999999877 777899999999999999


Q ss_pred             CHHHHHHHhhcCCcc----------------------ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCc
Q 022200           99 HTQMVLRLIDVDRNL----------------------VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKET  155 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~----------------------~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t  155 (301)
                      +.+++++|++.|++.                      ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.|
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t  159 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY  159 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            999999999877541                      566788999999999999 888999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       156 ~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      |||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..       +|++.     .++..|.||||.|+..
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEK------GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            99999999999999999996      999999999999999999998       66666     6788999999999765


Q ss_pred             hhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200          224 IADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL  263 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l  263 (301)
                      ....  ...++        .+......+..+.|+++.|+-
T Consensus       234 ~~~~--i~~Ll--------~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        234 NRSA--IELLI--------NNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             ChHH--HHHHH--------cCCCCCCcCCCCCCHHHHHHh
Confidence            4321  11111        233344456678899998874

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.2e-33  Score=251.43  Aligned_cols=196  Identities=14%  Similarity=0.154  Sum_probs=169.7

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC--CHHHHHHHHHhCCchhhhcCCCCCcH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG--HVNFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      .+.+|.||||+|++.|+.++|+.|++.|++++....   .|+||||+|+..+  ..++++.|+++|+++....|..|.||
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~---~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK---QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC---CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            457799999999999999999999999999865543   5999999998866  48999999999998855679999999


Q ss_pred             HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhccccCCCcHHHHHHHcC--C
Q 022200           91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQVTIRKETALYVAAKND--K  165 (301)
Q Consensus        91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g--~  165 (301)
                      || |+..++.+++++|++.|++ ++.+|..|+||||+|+..   ...++++|++.|++++.+|..|.||||+|+..|  +
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            97 6778999999999999999 999999999999999876   467889999999999999999999999999986  7


Q ss_pred             HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH--------HHHhhhhhCCCCchhhhhh
Q 022200          166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR--------KLESTVRNFGGREGSSLAT  221 (301)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~--------~Ll~~~~n~~g~tpl~~a~  221 (301)
                      .+++++|++       +++++.+|..|.||||+|+..        .|+++-.+..++| ++++.
T Consensus       223 ~~iv~lLl~-------gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~-~~~a~  278 (446)
T PHA02946        223 VDIINLLLP-------STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQT-VNICI  278 (446)
T ss_pred             HHHHHHHHc-------CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcH-HHHHH
Confidence            899999986       899999999999999999987        4455433334554 66654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=248.70  Aligned_cols=175  Identities=18%  Similarity=0.112  Sum_probs=103.6

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      .++|+.|++.|+.++++.|++.|++++....   .|.||||+|+..|+.+++++|++.|+.+ +.++..+.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIY---DGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            3556666666666666666666655543322   2566666666666666666666665543 44455566666666666


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhh
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWL  176 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~  176 (301)
                      |+.+++++|++.|+...+..+..|.||||+|+.. ..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ 
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-
Confidence            6666666666665553344455566666666665 55566666666666666666666666666666666666666654 


Q ss_pred             hhcCcccccccccCCCCcHHHHHHHH
Q 022200          177 RYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       177 ~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                           |++++.+|..|+||||+|+..
T Consensus       158 -----g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        158 -----KACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             -----CCCCCCCCCCCCCHHHHHHHc
Confidence                 556666666666666666655

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-32  Score=252.69  Aligned_cols=198  Identities=22%  Similarity=0.199  Sum_probs=131.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHH-----HHHcCCHHHHHHHHHhCCchhhhcCCCCCc
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHI-----AASMGHVNFALEIMRLKPSFARKQNQYGCS   89 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   89 (301)
                      ..+.+|||.|++.|+.++|+.|++.|.+++....   .|.||||+     |+..|+.++++.|++.|+++ +..|..|.|
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~---~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~t  108 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTK---NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGIT  108 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCCCCCccc---cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCc
Confidence            3456677777777777777777777766543332   36677777     77777777777777776666 666667777


Q ss_pred             HHHHHH--HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhccccCCCcHHHHHHHcC
Q 022200           90 PLHLAL--QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQVTIRKETALYVAAKND  164 (301)
Q Consensus        90 pLh~A~--~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g  164 (301)
                      |||+|+  ..|+.+++++|++.|++ ++..+..|.||||+|+..   ..+++++|++.|++++.+|..|.||||+|+..|
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence            777777  66777777777777766 666667777777776655   456666667777777766667777777777777


Q ss_pred             CHHHHHHHHHhhhhcCcccccccccCCC------CcHHHHHHHH---------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          165 KLKVLKVMLGWLRYVNKDDIINRKDDEG------SILLHISISR---------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~g------~tpLh~A~~~---------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      +.+++++|+++      |++++..+..|      .||||+|+..         .|++.     .+|..|.||||+|+..
T Consensus       188 ~~~iv~~Ll~~------ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        188 NIDVIKFLLDN------GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             CHHHHHHHHHc------CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            77777777764      66666666666      6666666544         34443     4556666666666543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=248.10  Aligned_cols=197  Identities=16%  Similarity=0.097  Sum_probs=179.1

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      ..|.||||+|+..|+.++++.|++.|++......   .+.||||.|+..|+.++++.|++.++...+..+..|.||||+|
T Consensus        33 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~---~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         33 YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP---DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC---CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence            4689999999999999999999999987654322   4899999999999999999999999877677788899999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      +..|+.+++++|++.|++ ++.++..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       110 ~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll  188 (413)
T PHA02875        110 TILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL  188 (413)
T ss_pred             HHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999 999999999999999999 888999999999999999999999999999999999999999


Q ss_pred             HhhhhcCcccccccccCCCC-cHHHHHHHH-------HHHhh--------hhhCCCCchhhhhh
Q 022200          174 GWLRYVNKDDIINRKDDEGS-ILLHISISR-------KLEST--------VRNFGGREGSSLAT  221 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~-tpLh~A~~~-------~Ll~~--------~~n~~g~tpl~~a~  221 (301)
                      ++      |++++..+..|. ||+|+|+..       +|+++        ..+.++.||+++++
T Consensus       189 ~~------ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        189 DS------GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             hC------CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHH
Confidence            96      999999998885 899999987       67766        34678999999774

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-32  Score=250.91  Aligned_cols=257  Identities=16%  Similarity=0.143  Sum_probs=206.8

Q ss_pred             HHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC---CHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           22 NEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG---HVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        22 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ..++..++++.|+.|++.|++++....   .|.||||+|+..|   +.++++.|++.|+++ +.++..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~---~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGE---YGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCC---CCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            456778999999999999999865543   5999999999998   999999999999887 888999999999999999


Q ss_pred             -CHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhccccCCCcHHHHHHHcC--CHHHHHHH
Q 022200           99 -HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQVTIRKETALYVAAKND--KLKVLKVM  172 (301)
Q Consensus        99 -~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~~~~L  172 (301)
                       +.+++++|++.|++ ++.+|..|.||||+|+..   ...++++|++.|++++..|..|.||||+|+..+  +.+++++|
T Consensus        95 ~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         95 TTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence             59999999999999 999999999999999943   678999999999999999999999999999876  68999999


Q ss_pred             HHhhhhcCcccccccccCCCCcHHHHHHHH---------HHHhh-----hhhCCCCchhhhhhhhhhhhh-hhhhhhhhh
Q 022200          173 LGWLRYVNKDDIINRKDDEGSILLHISISR---------KLEST-----VRNFGGREGSSLATVEIADYL-KRGLIWRQK  237 (301)
Q Consensus       173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~---------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~-~~~~~~~~~  237 (301)
                      +++      |++++..|..|+||||+|+..         .|++.     .+|..|.||||+|+....... ....++.  
T Consensus       174 l~~------g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~--  245 (471)
T PHA03095        174 IDA------GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI--  245 (471)
T ss_pred             HHc------CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH--
Confidence            996      999999999999999999876         55555     889999999999976543211 1112222  


Q ss_pred             hhhhhhccccchhhhcchhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccccccc
Q 022200          238 VLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATNVAAT  296 (301)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~t~l~va~liatv~faa~~~~Pgg~~~~~~~~~~~~~~~f~~  296 (301)
                           .+......+..+.|++++|+.-....+...+--.|.-..-....|.++++.++.
T Consensus       246 -----~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        246 -----AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             -----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence                 344455556788999999988644444444433443222233446677666543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=261.14  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=83.8

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHH--------------------------------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAA--------------------------------   61 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~--------------------------------   61 (301)
                      ...+.||||.|++.|+.++|+.|++++|+.....+.  .|+||||+|+                                
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~--~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  115 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDH--KCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKH  115 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccchhhch--hhccccccccCCCCccccccccccchhhcccccHHHHHHHHH
Confidence            345789999999999999999999998875444433  4777777555                                


Q ss_pred             --------------------------------------HcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHH
Q 022200           62 --------------------------------------SMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMV  103 (301)
Q Consensus        62 --------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v  103 (301)
                                                            ..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++|
T Consensus       116 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv-n~~d~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        116 KLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADV-NAKDIYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHH
Confidence                                                  446677788888887766 67788888888888888888888


Q ss_pred             HHHhhcCCccceecCCCCCchhHHHHh
Q 022200          104 LRLIDVDRNLVRVQGREGVTPLHYVAE  130 (301)
Q Consensus       104 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~  130 (301)
                      ++|+++|++ ++..+..|.||||+|+.
T Consensus       195 ~~LL~~Gad-~n~~~~~g~t~L~~A~~  220 (682)
T PHA02876        195 NLLLSYGAD-VNIIALDDLSVLECAVD  220 (682)
T ss_pred             HHHHHCCCC-cCccCCCCCCHHHHHHH
Confidence            888888776 55555555555554444

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-32  Score=250.32  Aligned_cols=200  Identities=23%  Similarity=0.186  Sum_probs=184.6

Q ss_pred             ccCCCHHHHH-----HHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHH--HcCCHHHHHHHHHhCCchhhhcCCC
Q 022200           14 KSRTDQRLNE-----AAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAA--SMGHVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        14 ~~~~~~~L~~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      +..+.+|||.     |+..|+.++++.|++.|+++.....   .|.||||+|+  ..|+.+++++|++.|+++ +.++..
T Consensus        65 ~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~---~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~  140 (480)
T PHA03100         65 TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN---NGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSD  140 (480)
T ss_pred             cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC---CCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCC
Confidence            4557799999     9999999999999999999844333   5999999999  999999999999999876 778999


Q ss_pred             CCcHHHHHHHCC--CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC------CcHH
Q 022200           87 GCSPLHLALQNS--HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK------ETAL  157 (301)
Q Consensus        87 g~tpLh~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g------~t~L  157 (301)
                      |.||||+|+..|  +.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..+..|      .|||
T Consensus       141 g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        141 GENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL  219 (480)
T ss_pred             CCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence            999999999999  99999999999999 999999999999999999 8999999999999999999999      9999


Q ss_pred             HHHHHcCC--HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          158 YVAAKNDK--LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       158 h~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      |.|+..|+  .+++++|+++      |++++.+|..|.||||+|+..       .|++.     .+|..|+||+++|+..
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~------g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSY------GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            99999999  9999999996      999999999999999999997       66766     7899999999999764


Q ss_pred             h
Q 022200          224 I  224 (301)
Q Consensus       224 ~  224 (301)
                      .
T Consensus       294 ~  294 (480)
T PHA03100        294 N  294 (480)
T ss_pred             C
Confidence            3

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.1e-31  Score=217.65  Aligned_cols=178  Identities=16%  Similarity=0.129  Sum_probs=156.0

Q ss_pred             cccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC--CHHHHHHHHHhCCchhhhcC-CCC
Q 022200           11 QKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG--HVNFALEIMRLKPSFARKQN-QYG   87 (301)
Q Consensus        11 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g   87 (301)
                      ....+...+||+.|++.|+++.|+.|++..   +.. +  ..|.||||+|+..+  +.+++++|++.|+++ +.++ ..|
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~---n~~-~--~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g   87 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKFV---NDC-N--DLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNN   87 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHhh---hcc-C--ccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCC
Confidence            344567889999999999999999999752   222 2  25999999999854  899999999999988 6665 589


Q ss_pred             CcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhccccCCCcHHHH-H
Q 022200           88 CSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQVTIRKETALYV-A  160 (301)
Q Consensus        88 ~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~~d~~g~t~Lh~-A  160 (301)
                      .||||+|+..   ++.+++++|+++|++ ++.+|..|.||||+|+..   ..+++++|++.|++++.+|..|.||||. |
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence            9999998864   479999999999999 999999999999998764   6789999999999999999999999995 5


Q ss_pred             HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       161 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +..++.+++++|+++      |++++.+|..|.||||+|..+
T Consensus       167 ~~~~~~~iv~~Ll~~------Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        167 LFHSDKKIFDFLTSL------GIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HhcCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhh
Confidence            678899999999996      999999999999999999876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.7e-31  Score=248.38  Aligned_cols=206  Identities=15%  Similarity=0.057  Sum_probs=170.6

Q ss_pred             ccCCCHHHHHHHHhCC--HHHHHHHHHcChhhhhhhcCCCCCChHHHHH-------------------------------
Q 022200           14 KSRTDQRLNEAAQAGN--VDALYELIWEDAYLIDQIDQVPFVDTHLHIA-------------------------------   60 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A-------------------------------   60 (301)
                      +..|.||||+|++.|+  .++|+.|++.|++++....   .|+||||+|                               
T Consensus       209 D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~---~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L  285 (764)
T PHA02716        209 NNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV---NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMIL  285 (764)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhh
Confidence            4678999999999995  5899999999999876544   499999975                               


Q ss_pred             ------HHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH--CCCHHHHHHHhhcCCccceecCCCCCchhHHHHh--
Q 022200           61 ------ASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ--NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--  130 (301)
Q Consensus        61 ------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~--~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--  130 (301)
                            +..|+.++++.|++.|+++ +.+|..|+||||+|+.  .++.+++++|++.|++ ++.+|..|+||||+|+.  
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSML  363 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhh
Confidence                  4457889999999999876 7889999999999875  4689999999999999 99999999999999864  


Q ss_pred             ------------c-HHHHHHHHHhCCcchhccccCCCcHHHH----HHHcCCHHHHHHHHHhhhh---------------
Q 022200          131 ------------N-VDLLYKFLTACPKSILQVTIRKETALYV----AAKNDKLKVLKVMLGWLRY---------------  178 (301)
Q Consensus       131 ------------~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~----A~~~g~~~~~~~Ll~~~~~---------------  178 (301)
                                  . ..+++++|++.|++++.+|..|+||||.    |...++.+++++|++....               
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~  443 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRV  443 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhcc
Confidence                        1 5689999999999999999999999994    2335778999998874110               


Q ss_pred             ----------------------------------------cCcccccccccCCCCcHHHHHHHH------------HHHh
Q 022200          179 ----------------------------------------VNKDDIINRKDDEGSILLHISISR------------KLES  206 (301)
Q Consensus       179 ----------------------------------------~~~~~~~~~~d~~g~tpLh~A~~~------------~Ll~  206 (301)
                                                              ..++.+++..|..|+||||+|+..            +|++
T Consensus       444 d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~  523 (764)
T PHA02716        444 DDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS  523 (764)
T ss_pred             CcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh
Confidence                                                    001234466789999999999975            4666


Q ss_pred             h-----hhhCCCCchhhhhhhhh
Q 022200          207 T-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       207 ~-----~~n~~g~tpl~~a~~~~  224 (301)
                      .     .+|++|+||||+|....
T Consensus       524 ~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        524 IQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             CCCCCcccCCCCCCHHHHHHHcC
Confidence            6     89999999999997654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=9.9e-31  Score=222.57  Aligned_cols=178  Identities=14%  Similarity=0.058  Sum_probs=157.8

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC-cHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC-SPLHLA   94 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpLh~A   94 (301)
                      ++.||||+|+..|+.++++.|++.|++++....   .|+||||+|+..|+.++++.|+++++++ +.++..|+ ||||+|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~---~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~A  135 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDD---KGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHH
Confidence            468999999999999999999999998765544   5999999999999999999999999877 66777774 899999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcH-HHHHHHcCCHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETA-LYVAAKNDKLKVLKV  171 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~~~~~  171 (301)
                      +..|+.+++++|++.+++.   .| ..|.||||+|+.. ..+++++|+++|++++.+|..|.|| ||+|+..|+.+++++
T Consensus       136 a~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            9999999999999987652   23 3589999999999 9999999999999999999999987 999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH-HHHhh
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-KLEST  207 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-~Ll~~  207 (301)
                      |+++      |++++.+|.+ .|||..|=.- +||++
T Consensus       213 Ll~~------Ga~in~~~~~-~~~l~~~e~~~~ll~~  242 (284)
T PHA02791        213 LFKY------DINIYSVNLE-NVLLDDAEIAKMIIEK  242 (284)
T ss_pred             HHHC------CCCCccCccc-CccCCCHHHHHHHHHh
Confidence            9997      9999999995 4888777333 77776

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.9e-30  Score=237.08  Aligned_cols=226  Identities=17%  Similarity=0.216  Sum_probs=176.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      .|+.+....+.+.+...++.-. ...........+.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+||..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCc
Confidence            3567777777655555555411 11111122225889999999999999999999999876 788999999999999875


Q ss_pred             CHH----------------------------------------------------------------HHHHHhhcCCccc
Q 022200           99 HTQ----------------------------------------------------------------MVLRLIDVDRNLV  114 (301)
Q Consensus        99 ~~~----------------------------------------------------------------~v~~Ll~~~~~~~  114 (301)
                      +.+                                                                ++++|++.|++ +
T Consensus        82 ~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-i  160 (477)
T PHA02878         82 NKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-I  160 (477)
T ss_pred             cHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-C
Confidence            433                                                                66667777777 7


Q ss_pred             eecCCC-CCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCC
Q 022200          115 RVQGRE-GVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG  192 (301)
Q Consensus       115 ~~~d~~-g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g  192 (301)
                      +.++.. |.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++|++.      |++++.+|..|
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~------ga~in~~d~~g  234 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN------GASTDARDKCG  234 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc------CCCCCCCCCCC
Confidence            888888 99999999999 88999999999999999999999999999999999999999996      99999999999


Q ss_pred             CcHHHHHHHH--------HHHhh-----hhhC-CCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHH
Q 022200          193 SILLHISISR--------KLEST-----VRNF-GGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPL  258 (301)
Q Consensus       193 ~tpLh~A~~~--------~Ll~~-----~~n~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  258 (301)
                      +||||+|+..        +|+++     .++. .|.||||+|...   ......++.       .+......+..+.|++
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~---~~~v~~Ll~-------~gadin~~d~~g~TpL  304 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS---ERKLKLLLE-------YGADINSLNSYKLTPL  304 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccC---HHHHHHHHH-------CCCCCCCcCCCCCCHH
Confidence            9999999965        56666     3443 799999999432   122223333       4455556677888999


Q ss_pred             HHHHH
Q 022200          259 VVAIL  263 (301)
Q Consensus       259 ~va~l  263 (301)
                      +.|+.
T Consensus       305 ~~A~~  309 (477)
T PHA02878        305 SSAVK  309 (477)
T ss_pred             HHHHH
Confidence            88864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.9e-31  Score=235.38  Aligned_cols=181  Identities=23%  Similarity=0.266  Sum_probs=165.2

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      +.+.+|-++||+|+.+++++++++|+++|++++.....  -+.||||+|+++|+..+|++|+++|+++ +.+|.+|.+||
T Consensus        73 ~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~--l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~l  149 (600)
T KOG0509|consen   73 NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV--LGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPL  149 (600)
T ss_pred             CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC--CCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHH
Confidence            34568999999999999999999999999998766532  4899999999999999999999999988 88999999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHHHcCCHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~~  169 (301)
                      |+|+..|+.-++-+||.++++ ++.+|.+|+||||+|+.. ....+..|+..++.+...| ..|.||||+|+..|+..++
T Consensus       150 Hla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v  228 (600)
T KOG0509|consen  150 HLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAV  228 (600)
T ss_pred             HHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceE
Confidence            999999999999999999988 999999999999999999 4443888889999999998 8999999999999999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+|++      .|++.+.+|.+|.||+.+|..+
T Consensus       229 ~Ll~~------g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  229 KLLLE------GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ehhhh------cCCcccccccCCCCHHHHHHHh
Confidence            96666      3899999999999999999665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.3e-30  Score=236.98  Aligned_cols=203  Identities=20%  Similarity=0.169  Sum_probs=157.5

Q ss_pred             cCCCHHHHHHHHhC--CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC------CHHHHHHHHHhCCchhhhcCCC
Q 022200           15 SRTDQRLNEAAQAG--NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG------HVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        15 ~~~~~~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      ..+.++|+.++..+  +.++|+.|++.|++++...    .+.||||.|+..+      +.+++++|+++|+++ +.+|..
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~----~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~  107 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG----YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFN  107 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC----CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCC
Confidence            45778887665543  6899999999999986542    3789999988754      468999999999887 888999


Q ss_pred             CCcHHHHHHHC---CCHHHHHHHhhcCCccc-eecCCCCCchhHHHHhc---HHHHHHHHHhCCcchhc-cccCCCcHHH
Q 022200           87 GCSPLHLALQN---SHTQMVLRLIDVDRNLV-RVQGREGVTPLHYVAEN---VDLLYKFLTACPKSILQ-VTIRKETALY  158 (301)
Q Consensus        87 g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~-~~~d~~g~tpLh~A~~~---~~~~~~lL~~~~~~~~~-~d~~g~t~Lh  158 (301)
                      |.||||.|+..   ++.+++++|+++|++ + +.+|..|+||||+|+..   ..+++++|++.|++++. .+..|.||||
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~  186 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN  186 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence            99999988765   678999999999999 7 88999999999998764   67899999999999998 6789999999


Q ss_pred             HHHHcC----CHHHHHHHHHhhhhcC--------------------------------cccccccccCCCCcHHHHHHHH
Q 022200          159 VAAKND----KLKVLKVMLGWLRYVN--------------------------------KDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       159 ~A~~~g----~~~~~~~Ll~~~~~~~--------------------------------~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|+..+    +.+++++|++.+....                                ++++++.+|..|+||||+|+..
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~  266 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV  266 (494)
T ss_pred             HHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh
Confidence            998764    8999999998622110                                1233455555666666666655


Q ss_pred             -------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          203 -------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       203 -------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                             .|++.     .+|..|+||||+|+..
T Consensus       267 ~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        267 DNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             cCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence                   45554     5566666666666543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=235.63  Aligned_cols=261  Identities=20%  Similarity=0.169  Sum_probs=179.9

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      .+.+|+|+|+..|+.++++.|++.+.+++...+   .|.||||+||..++.|..+.|++.++++ ...|.+|++|+|.|+
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de---~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa  195 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDE---NGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAA  195 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHhcCCcccccc---CCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHH
Confidence            344556666666666666666666655443332   3667777777777777666666666665 455677777777777


Q ss_pred             HCCCHHHHHHHhh-----cCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc---------------hhccccCCC
Q 022200           96 QNSHTQMVLRLID-----VDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS---------------ILQVTIRKE  154 (301)
Q Consensus        96 ~~~~~~~v~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~---------------~~~~d~~g~  154 (301)
                      ..|..++.+..+.     ++.. ++.-+.+|.||||.|+.. ..++.+.+++.|..               ++..|.+|.
T Consensus       196 ~s~s~e~mEi~l~~~g~~r~~~-in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~  274 (929)
T KOG0510|consen  196 RSGSKECMEIFLPEHGYERQTH-INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGC  274 (929)
T ss_pred             Hhcchhhhhhhhccccchhhcc-cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCC
Confidence            7777777777776     4445 777788888888888888 77777777766652               245688899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-------hhhCCCCchhhhh
Q 022200          155 TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-------VRNFGGREGSSLA  220 (301)
Q Consensus       155 t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-------~~n~~g~tpl~~a  220 (301)
                      ||||+|++.|++++++.|+..      |++++.++.++.||||.|+.+       .||+.       ..|..|.||+|+|
T Consensus       275 tpLH~a~r~G~~~svd~Ll~~------Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  275 TPLHYAARQGGPESVDNLLGF------GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             chHHHHHHcCChhHHHHHHHc------CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            999999999999999999986      999999999999999999988       66663       7788899999999


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccc
Q 022200          221 TVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAILITTATFQAALTPPQDLWGNNSNNTDFATN  292 (301)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~liatv~faa~~~~Pgg~~~~~~~~~~~~~~  292 (301)
                      +++.........+-+........     ..+..++|++|.|+.-..+..-+.|---|-+.+.-...|+.||+
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~-----e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMS-----EADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhccc-----ccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            76544332222222211111000     11788999999999877777666665566655544455666665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-29  Score=233.17  Aligned_cols=176  Identities=15%  Similarity=0.121  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHhC------CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCC
Q 022200           17 TDQRLNEAAQAG------NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYG   87 (301)
Q Consensus        17 ~~~~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g   87 (301)
                      +.||||.|+..+      ..++++.|++.|++++....   .|.||||.|+..   |+.+++++|+++|+++.+.+|..|
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~---~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g  145 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF---NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRG  145 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCC---CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCC
Confidence            456666665543      34566666666666544332   366666655543   456666666666655434556666


Q ss_pred             CcHHHHHHHC--CCHHHHHHHhhcCCcccee-cCCCCCchhHHHHhc-----HHHHHHHHHhCCc---------------
Q 022200           88 CSPLHLALQN--SHTQMVLRLIDVDRNLVRV-QGREGVTPLHYVAEN-----VDLLYKFLTACPK---------------  144 (301)
Q Consensus        88 ~tpLh~A~~~--~~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~-----~~~~~~lL~~~~~---------------  144 (301)
                      +||||+|+..  ++.+++++|+++|++ ++. .+..|.||||+|+..     ..+++++|++.|+               
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~  224 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES  224 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence            6666665543  456666666666666 444 455666666665443     3445555555554               


Q ss_pred             -----------------------chhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHH
Q 022200          145 -----------------------SILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISIS  201 (301)
Q Consensus       145 -----------------------~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~  201 (301)
                                             +++.+|..|+||||+|+..|+.+++++|++.      |++++.+|..|+||||+|+.
T Consensus       225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~------Gadin~~d~~G~TpL~~A~~  298 (494)
T PHA02989        225 FLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL------GDDIYNVSKDGDTVLTYAIK  298 (494)
T ss_pred             HHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc------CCCccccCCCCCCHHHHHHH
Confidence                                   4556667799999999999999999999996      99999999999999999999


Q ss_pred             H
Q 022200          202 R  202 (301)
Q Consensus       202 ~  202 (301)
                      .
T Consensus       299 ~  299 (494)
T PHA02989        299 H  299 (494)
T ss_pred             c
Confidence            8

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1e-29  Score=230.88  Aligned_cols=200  Identities=22%  Similarity=0.293  Sum_probs=108.8

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcC-----------------------------------CCCCChHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQ-----------------------------------VPFVDTHL   57 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------------------~~~g~t~L   57 (301)
                      -+..+.||||.||..++.+..+.|++.|+++...+..                                   ++.|.|||
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pL  229 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPL  229 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcch
Confidence            3444556777777777777666666666655332221                                   11245555


Q ss_pred             HHHHHcCCHHHHHHHHHhCCch--------------hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCc
Q 022200           58 HIAASMGHVNFALEIMRLKPSF--------------ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT  123 (301)
Q Consensus        58 h~A~~~g~~~~v~~Ll~~~~~~--------------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t  123 (301)
                      |.|+..|+.++++.+|+.+...              ++..|.+|.||||+|++.|+.++++.|+..|++ ++.++.++.|
T Consensus       230 hlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~s  308 (929)
T KOG0510|consen  230 HLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEES  308 (929)
T ss_pred             hhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCC
Confidence            5555555555555555554311              122355566666666666666666666666665 5566666666


Q ss_pred             hhHHHHhc-H-HHHHHHHHhC-CcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccc---cccCCCCcHHH
Q 022200          124 PLHYVAEN-V-DLLYKFLTAC-PKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN---RKDDEGSILLH  197 (301)
Q Consensus       124 pLh~A~~~-~-~~~~~lL~~~-~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~---~~d~~g~tpLh  197 (301)
                      |||.|+.+ . ..+.++|.+. -...+..|..|.||||+|++.||..++++|+++      |++..   ..|.+|+||||
T Consensus       309 pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~------GA~~~~~~e~D~dg~TaLH  382 (929)
T KOG0510|consen  309 PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK------GALFLNMSEADSDGNTALH  382 (929)
T ss_pred             chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc------ChhhhcccccccCCchhhh
Confidence            66666655 2 2333333312 224455555566666666666666666666654      55544   33566666666


Q ss_pred             HHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200          198 ISISR-------KLEST-----VRNFGGREGSSL  219 (301)
Q Consensus       198 ~A~~~-------~Ll~~-----~~n~~g~tpl~~  219 (301)
                      +|++.       .|+++     .+|+.|.|++++
T Consensus       383 ~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  383 LAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            66655       44544     455566666664

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=232.30  Aligned_cols=204  Identities=19%  Similarity=0.080  Sum_probs=155.9

Q ss_pred             CCCHHHHHHHHh--CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHc-----CCHHHHHHHHHhCCchhhhcCCCCC
Q 022200           16 RTDQRLNEAAQA--GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM-----GHVNFALEIMRLKPSFARKQNQYGC   88 (301)
Q Consensus        16 ~~~~~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~   88 (301)
                      .+.++++.+...  ++.++|+.|++.|++++....   .|.||||.|+..     ++.++++.|+++|+++ +.+|..|.
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~---~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~  110 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDN---EYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGE  110 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCC---CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcC
Confidence            355665544433  478888888888888766554   388888887753     5678888888888775 77788888


Q ss_pred             cHHHHHHHCC---CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-H---HHHHHHHHhCCcchhccc-cCCCcHHHHH
Q 022200           89 SPLHLALQNS---HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-V---DLLYKFLTACPKSILQVT-IRKETALYVA  160 (301)
Q Consensus        89 tpLh~A~~~~---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~---~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A  160 (301)
                      ||||+|+..+   +.+++++|+++|++ ++.+|..|.||||+|+.. .   .+++++|++.|++++..+ ..|.||||.+
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHH
Confidence            8888888765   67888888888888 888888888888888876 4   778888888888888774 4678888887


Q ss_pred             HHc----CCHHHHHHHHHhhhhcC---------------------------------cccccccccCCCCcHHHHHHHH-
Q 022200          161 AKN----DKLKVLKVMLGWLRYVN---------------------------------KDDIINRKDDEGSILLHISISR-  202 (301)
Q Consensus       161 ~~~----g~~~~~~~Ll~~~~~~~---------------------------------~~~~~~~~d~~g~tpLh~A~~~-  202 (301)
                      +..    ++.+++++|++++....                                 .++++|.+|..|+||||+|+.. 
T Consensus       190 ~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             HHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcC
Confidence            654    36778888876532111                                 1457888999999999999987 


Q ss_pred             ------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          203 ------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       203 ------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                            .|++.     .+|..|+|||++|+...
T Consensus       270 ~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        270 NRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             cHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence                  77776     88999999999997643

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=202.51  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=141.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC--CHHHHHHHhhcCCccceecC-CCCCchhHHH
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS--HTQMVLRLIDVDRNLVRVQG-REGVTPLHYV  128 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  128 (301)
                      .+.||||.|+..|+.++|+.|+..    .+.+|..|.||||+|+..+  +.+++++|++.|++ ++.++ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCCCCCCCHHHHH
Confidence            378999999999999999999975    2567889999999999865  89999999999999 88887 5899999998


Q ss_pred             Hhc----HHHHHHHHHhCCcchhccccCCCcHHHHHHH--cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          129 AEN----VDLLYKFLTACPKSILQVTIRKETALYVAAK--NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       129 ~~~----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +..    ..+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++      |++++.+|.+|+||||.++..
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~------gadin~~d~~g~t~Lh~~a~~  168 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS------GVSFLNKDFDNNNILYSYILF  168 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc------CCCcccccCCCCcHHHHHHHh
Confidence            753    5789999999999999999999999999986  4689999999996      999999999999999975443


Q ss_pred             --------HHHhh-----hhhCCCCchhhhhhh
Q 022200          203 --------KLEST-----VRNFGGREGSSLATV  222 (301)
Q Consensus       203 --------~Ll~~-----~~n~~g~tpl~~a~~  222 (301)
                              +|++.     .+|..|+||+++|..
T Consensus       169 ~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        169 HSDKKIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence                    66666     789999999999954

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.8e-28  Score=224.31  Aligned_cols=214  Identities=15%  Similarity=0.087  Sum_probs=171.7

Q ss_pred             CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHH--cCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC-----CCHH
Q 022200           29 NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAAS--MGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN-----SHTQ  101 (301)
Q Consensus        29 ~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~-----~~~~  101 (301)
                      +++.|+.|++.+. ++...    +|.|+++....  .++.+++++|+++|+++ +.+|..|.||||.|+.+     +..+
T Consensus        17 ~~~~v~~ll~~~~-~~~~~----~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEIV----NEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCC-hhhhc----ccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            4678999997653 32322    37787774444  45799999999999987 88899999999999864     6789


Q ss_pred             HHHHHhhcCCccceecCCCCCchhHHHHhc----HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC---HHHHHHHHH
Q 022200          102 MVLRLIDVDRNLVRVQGREGVTPLHYVAEN----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK---LKVLKVMLG  174 (301)
Q Consensus       102 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~~~~Ll~  174 (301)
                      ++++|++.|++ ++.+|..|+||||+|+..    ..+++++|++.|++++.+|..|.||||+|+..++   .+++++|++
T Consensus        91 iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         91 IVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            99999999999 999999999999999985    6789999999999999999999999999999998   999999999


Q ss_pred             hhhhcCccccccccc-CCCCcHHHHHHHH-----------HHHhh-----------------------------------
Q 022200          175 WLRYVNKDDIINRKD-DEGSILLHISISR-----------KLEST-----------------------------------  207 (301)
Q Consensus       175 ~~~~~~~~~~~~~~d-~~g~tpLh~A~~~-----------~Ll~~-----------------------------------  207 (301)
                      .      |++++.++ ..|.||||.++..           +|+++                                   
T Consensus       170 ~------gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~  243 (489)
T PHA02798        170 K------GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILD  243 (489)
T ss_pred             h------CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHH
Confidence            6      99999885 5799999988653           22221                                   


Q ss_pred             ---------hhhCCCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200          208 ---------VRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL  263 (301)
Q Consensus       208 ---------~~n~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l  263 (301)
                               .+|..|+||||+|+.... ......++.       .+......+..+.|+++.|+.
T Consensus       244 ~l~~~~dvN~~d~~G~TPL~~A~~~~~-~~~v~~LL~-------~GAdin~~d~~G~TpL~~A~~  300 (489)
T PHA02798        244 FIFSYIDINQVDELGFNPLYYSVSHNN-RKIFEYLLQ-------LGGDINIITELGNTCLFTAFE  300 (489)
T ss_pred             HHHhcCCCCCcCcCCccHHHHHHHcCc-HHHHHHHHH-------cCCcccccCCCCCcHHHHHHH
Confidence                     357789999999976532 223333344       455566667788899988874

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=224.26  Aligned_cols=195  Identities=12%  Similarity=0.039  Sum_probs=159.5

Q ss_pred             ccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHH----HHHHHHHhCCchhhhcCCC
Q 022200           14 KSRTDQRLNEAAQA---GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVN----FALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        14 ~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~   86 (301)
                      +..|.||||+|++.   |+.++|+.||+.|++++....   .|+||||+|+..|+.+    +++.|++.++.. +..+  
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~---~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--  102 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW---RQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--  102 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC---CCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--
Confidence            55689999998666   889999999999999865443   5999999999999955    556777764432 3323  


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHh--c-HHHHHHHHHhCCcchhcccc---CC-------
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--N-VDLLYKFLTACPKSILQVTI---RK-------  153 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~-~~~~~~lL~~~~~~~~~~d~---~g-------  153 (301)
                      ..+++|+|+..|+.+++++|++.|++ ++.+|..|+||||.++.  . ..+++++|++.|++++.+|.   .|       
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence            23678889999999999999999999 99999999999996543  3 89999999999999986653   23       


Q ss_pred             ----CcHHHHHHH-----------cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH---------HHHhh--
Q 022200          154 ----ETALYVAAK-----------NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR---------KLEST--  207 (301)
Q Consensus       154 ----~t~Lh~A~~-----------~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~---------~Ll~~--  207 (301)
                          .||||+|+.           .++.+++++|+++      |++++.+|.+|+||||+|+..         .|++.  
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~------Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d  255 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH------GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGID  255 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHC------CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCc
Confidence                599999986           4689999999996      999999999999999999987         34433  


Q ss_pred             ------hhhCCCCchhhhhh
Q 022200          208 ------VRNFGGREGSSLAT  221 (301)
Q Consensus       208 ------~~n~~g~tpl~~a~  221 (301)
                            ..|..|.+|+++|+
T Consensus       256 ~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        256 NTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             ccccccccCcccccchHHHH
Confidence                  24556788888886

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=204.67  Aligned_cols=181  Identities=18%  Similarity=0.176  Sum_probs=160.9

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcC-hhhh-----hhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWED-AYLI-----DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~-----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      ....|.|||.+|+++|+.++|++|+++. +++.     .-+.++.+|-+||..|+..||.++|+.|+++++++ |.....
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~T  116 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRT  116 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-cccccc
Confidence            3456789999999999999999999853 3221     11223346899999999999999999999999776 666777


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      ..|||--||..|+.+++++|+++|++ +++.|..|.|.||+|+.. ...++++|++.|+|++.++..|.|+||.|++.|+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence            88999999999999999999999999 999999999999999999 8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+++++|+.+      |+.++ +|..|-|||..|+..
T Consensus       196 vdivq~Ll~~------ga~i~-~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  196 VDIVQLLLKH------GAKID-VDGHGMTPLLLAAVT  225 (615)
T ss_pred             HHHHHHHHhC------Cceee-ecCCCCchHHHHhhh
Confidence            9999999997      77776 677799999999888

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.7e-26  Score=202.88  Aligned_cols=168  Identities=15%  Similarity=0.049  Sum_probs=150.3

Q ss_pred             HHHHhCCHHHHHHHHHcChhhh------hhhcCCCCCChHHHHHHH--cCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           23 EAAQAGNVDALYELIWEDAYLI------DQIDQVPFVDTHLHIAAS--MGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        23 ~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      +|+..+..++++.|+.+|.+++      ...+   .++|+||+++.  .|+.+++++|+++|+++ +.  .++.||||.|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~---~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A  156 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCN---SVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRG  156 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccc---cccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHH
Confidence            8999999999999999999966      3333   48999999999  89999999999999987 44  3568999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceec-----CCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQ-----GREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV  168 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  168 (301)
                      +..++.+++++|+++|++..+..     +..+.||+|.|+.. ..+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       157 ~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~ei  236 (437)
T PHA02795        157 ICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDL  236 (437)
T ss_pred             HHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999998533333     23478999999998 8899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          169 LKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       169 ~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +++|+++      |++++.+|..|+||||+|+..
T Consensus       237 VelLL~~------GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        237 VSWLLEN------GANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             HHHHHHC------CCCCCCcCCCCCCHHHHHHHc
Confidence            9999996      999999999999999999874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=7e-26  Score=220.52  Aligned_cols=174  Identities=18%  Similarity=0.096  Sum_probs=157.9

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      +..++|+.||..|+.+.++.|++.|.+++..+.   .|+||||+|+..|+.++++.|+++++++ +.+|.+|.||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~---~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDS---KGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            456899999999999999999999999865544   4999999999999999999999998876 888999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      ..|+.+++++|++.++. .+  ...|.++||.|+.. ...++++|+++|++++.+|.+|+||||+|+..|+.+++++|++
T Consensus       600 ~~g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999988765 32  35677999999999 8899999999999999999999999999999999999999999


Q ss_pred             hhhhcCcccccccccCCC-CcHHHHHHHH
Q 022200          175 WLRYVNKDDIINRKDDEG-SILLHISISR  202 (301)
Q Consensus       175 ~~~~~~~~~~~~~~d~~g-~tpLh~A~~~  202 (301)
                      +      |++++..|..| .||++++...
T Consensus       677 ~------GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        677 N------GADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             c------CCCCCCCCCCCCCCHHHHHHHH
Confidence            6      99999999998 9999888543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2e-26  Score=198.14  Aligned_cols=193  Identities=22%  Similarity=0.202  Sum_probs=167.1

Q ss_pred             HHHHHhCCHHHHHHHHHcC--hhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh-CCch-------hhhcCCCCCcHH
Q 022200           22 NEAAQAGNVDALYELIWED--AYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL-KPSF-------ARKQNQYGCSPL   91 (301)
Q Consensus        22 ~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~-------~~~~~~~g~tpL   91 (301)
                      .-|++.|.+..+..|+...  .++.........|.|||-+||++||.++|++|+++ ++++       .+-...+|.+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            4788889998888887543  33444434444689999999999999999999996 3322       111246789999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK  170 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~  170 (301)
                      ..|+..||.++|+.|+++|++ +|.......|||-.||.- ..+++++|+++|+|++..|..|.|+||+||..|+.+|++
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~-VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGAS-VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCc-cccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            999999999999999999998 999889999999999999 889999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh----hhhCCCCchhhhhh
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST----VRNFGGREGSSLAT  221 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~----~~n~~g~tpl~~a~  221 (301)
                      +|++.      |+++|.++..|+|+||.++..       +|+++    .+|..|.|||..|.
T Consensus       168 yLle~------gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  168 YLLEQ------GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAA  223 (615)
T ss_pred             HHHHh------CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHh
Confidence            99996      999999999999999999976       77777    78889999999993

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.8e-25  Score=195.63  Aligned_cols=165  Identities=13%  Similarity=-0.040  Sum_probs=146.8

Q ss_pred             ccCCCHHHHHHHH--hCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhc-----CCC
Q 022200           14 KSRTDQRLNEAAQ--AGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ-----NQY   86 (301)
Q Consensus        14 ~~~~~~~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~   86 (301)
                      .....|+||.|+.  .|+.++|++|+++|++++..     ++.||||.|+..|+.++++.|+++|+...+..     +..
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~-----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI-----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            3457899999999  89999999999999998642     36899999999999999999999997543333     245


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      +.||+|.|+..++.+++++|+++|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            88999999999999999999999999 999999999999999999 8899999999999999999999999999999984


Q ss_pred             --------HHHHHHHHHhhhhcCcccccccccC
Q 022200          166 --------LKVLKVMLGWLRYVNKDDIINRKDD  190 (301)
Q Consensus       166 --------~~~~~~Ll~~~~~~~~~~~~~~~d~  190 (301)
                              .+++++|++.      |++++..+.
T Consensus       267 ~~~~~~~~~eIvelLL~~------gadI~~~~~  293 (437)
T PHA02795        267 VIARRETHLKILEILLRE------PLSIDCIKL  293 (437)
T ss_pred             cccccccHHHHHHHHHhC------CCCCCchhH
Confidence                    6999999985      777776553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=4.3e-25  Score=213.63  Aligned_cols=196  Identities=20%  Similarity=0.162  Sum_probs=155.6

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHc--ChhhhhhhcCCCCCChHHH-HHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWE--DAYLIDQIDQVPFVDTHLH-IAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      .+++.+|+.|++.|+.+.|+.+++.  +.+++..+.   .|+|||| .|+..++.++++.|++.+.     .+..|.|||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~---~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~L   86 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDR---LGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLL   86 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCc---cchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHH
Confidence            4567899999999999999999998  555543322   5999999 8888999999999999876     577899999


Q ss_pred             HHHHHCC---CHHHHHHHhhcCCcc---------ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc--------
Q 022200           92 HLALQNS---HTQMVLRLIDVDRNL---------VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT--------  150 (301)
Q Consensus        92 h~A~~~~---~~~~v~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d--------  150 (301)
                      |.|+..+   ...+++.+++.+.+.         ....+..|.||||+|+.. +.+++++|+++|++++.++        
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence            9998722   223444444443220         111235799999999999 9999999999999998653        


Q ss_pred             ------cCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH----------------HHHhh-
Q 022200          151 ------IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR----------------KLEST-  207 (301)
Q Consensus       151 ------~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~----------------~Ll~~-  207 (301)
                            ..|+||||.|+..|+.+++++|+++      |++++.+|..|+||||+|+..                .+++. 
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll  240 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSED------PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL  240 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                  3589999999999999999999986      999999999999999999875                12221 


Q ss_pred             -----------hhhCCCCchhhhhhhhh
Q 022200          208 -----------VRNFGGREGSSLATVEI  224 (301)
Q Consensus       208 -----------~~n~~g~tpl~~a~~~~  224 (301)
                                 ..|.+|.||+|+|+...
T Consensus       241 ~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       241 DKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             hccCChHhhhhhcCCCCCCchhhhhhcC
Confidence                       46889999999996543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=204.72  Aligned_cols=183  Identities=12%  Similarity=0.052  Sum_probs=147.7

Q ss_pred             HHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCH----HH
Q 022200           30 VDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHT----QM  102 (301)
Q Consensus        30 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~----~~  102 (301)
                      ++.|+.|+..+.... ..+.  +|+||||+|+..   |+.+++++|++.|+++ +.++..|+||||+|+..|+.    ++
T Consensus        12 ~~~~~~l~~~~~~~~-~~d~--~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPND-TRNQ--FKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCccc-ccCC--CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHH
Confidence            467888988776653 3333  599999998655   8899999999999887 67899999999999999985    46


Q ss_pred             HHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHH--HcCCHHHHHHHHHhhhhc
Q 022200          103 VLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAA--KNDKLKVLKVMLGWLRYV  179 (301)
Q Consensus       103 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~~~~Ll~~~~~~  179 (301)
                      ++.|++.+.. .+..+  ..+++|+|+.. ..+++++|++.|++++.+|..|+||||.++  ..|+.+++++|+++    
T Consensus        88 ~~~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~----  160 (661)
T PHA02917         88 AMALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN----  160 (661)
T ss_pred             HHHHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc----
Confidence            6788876544 34433  23667778777 889999999999999999999999999654  57899999999996    


Q ss_pred             CcccccccccC---CC-----------CcHHHHHHH-----------H-------HHHhh-----hhhCCCCchhhhhhh
Q 022200          180 NKDDIINRKDD---EG-----------SILLHISIS-----------R-------KLEST-----VRNFGGREGSSLATV  222 (301)
Q Consensus       180 ~~~~~~~~~d~---~g-----------~tpLh~A~~-----------~-------~Ll~~-----~~n~~g~tpl~~a~~  222 (301)
                        |++++.+|.   .|           .||||+|+.           .       +|+++     .+|.+|.||||+|+.
T Consensus       161 --Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        161 --GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             --CCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH
Confidence              999986653   34           599999975           1       67776     889999999999976


Q ss_pred             hhh
Q 022200          223 EIA  225 (301)
Q Consensus       223 ~~~  225 (301)
                      ...
T Consensus       239 ~g~  241 (661)
T PHA02917        239 SSH  241 (661)
T ss_pred             cCC
Confidence            543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=5.5e-25  Score=211.02  Aligned_cols=196  Identities=23%  Similarity=0.207  Sum_probs=173.0

Q ss_pred             ccCCCHHHHHHHHhC-CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           14 KSRTDQRLNEAAQAG-NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      +..|.|++|+|+..| ..+....+++.+.+++....   .|.||||+|+..|+.++++.|++.++.. +.....|.+++|
T Consensus       437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~---~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK---QGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLH  512 (1143)
T ss_pred             hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc---ccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhh
Confidence            355789999999999 67777777888887766655   3999999999999999999999887554 556778999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      .|...+...+++.+++.|++ ++.++..|.||||.|+.+ ...++++|+++|++++.+++.|+||||.||..|+.+|+++
T Consensus       513 la~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHH
Confidence            99999999999999999999 999999999999999999 8899999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh----------hhhCCCCchhhhh
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST----------VRNFGGREGSSLA  220 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~----------~~n~~g~tpl~~a  220 (301)
                      |+++      |+++|..|.+|.||||+|++.       .|+..          ..+.+|.+|.+++
T Consensus       592 Llk~------GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~  651 (1143)
T KOG4177|consen  592 LLKH------GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVA  651 (1143)
T ss_pred             HHHc------CCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHH
Confidence            9997      999999999999999999999       22222          5678999999988

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=9.7e-26  Score=216.13  Aligned_cols=204  Identities=25%  Similarity=0.268  Sum_probs=147.1

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcC------------------------------CCCCChHHHHHH
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQ------------------------------VPFVDTHLHIAA   61 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------------------------~~~g~t~Lh~A~   61 (301)
                      ...+.+.+|+|.|+++|..+.++.++++|.+++.....                              ...|+||+|+|+
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhh
Confidence            34566788888888888888888888888775433221                              002455555555


Q ss_pred             HcC-CHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHH
Q 022200           62 SMG-HVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFL  139 (301)
Q Consensus        62 ~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL  139 (301)
                      ..| ..++...++..+.++ +.....|.||||.|+..|+.+++..|++.++. .+.....|.++||.+... ...+...+
T Consensus       449 ~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHH
Confidence            555 445554444444443 44455566666666666666666666666554 555555666666666666 55666667


Q ss_pred             HhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----
Q 022200          140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----  207 (301)
Q Consensus       140 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----  207 (301)
                      ...|++++.++..|.||||.|+.+|+..+|++||++      |++++.+|+.|+||||.|+..       +|+++     
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~------gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH------GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhC------CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence            778888888899999999999999999999999996      999999999999999999988       67777     


Q ss_pred             hhhCCCCchhhhhhhh
Q 022200          208 VRNFGGREGSSLATVE  223 (301)
Q Consensus       208 ~~n~~g~tpl~~a~~~  223 (301)
                      ..|.+|.|||++|...
T Consensus       601 a~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  601 AADLDGFTPLHIAVRL  616 (1143)
T ss_pred             cccccCcchhHHHHHh
Confidence            8889999999999654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=6e-24  Score=194.66  Aligned_cols=230  Identities=11%  Similarity=0.075  Sum_probs=145.1

Q ss_pred             ccCCCHHHH-HHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHH-cCCHHHHHHHHHhCCch------------
Q 022200           14 KSRTDQRLN-EAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAAS-MGHVNFALEIMRLKPSF------------   79 (301)
Q Consensus        14 ~~~~~~~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~------------   79 (301)
                      +..+..++| .|...|++++|+.|+++|++++...+.   |.+|+|+|+. .++.|++++|++.|++.            
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~---~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNG---INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCC---CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhh
Confidence            344555664 345567888888888888877655442   6778888755 57888888888887641            


Q ss_pred             -----------------------hhhcCCCCCcHHHHHHHCC-------CHHHHHHHhhcCCccceecCCCCCchhHHHH
Q 022200           80 -----------------------ARKQNQYGCSPLHLALQNS-------HTQMVLRLIDVDRNLVRVQGREGVTPLHYVA  129 (301)
Q Consensus        80 -----------------------~~~~~~~g~tpLh~A~~~~-------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  129 (301)
                                             .+.+|..|.||||+|+..+       +.+++++|+++|++ ++..|..|.||||+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~  223 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYV  223 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHH
Confidence                                   1234566788888888877       77888888888887 7777878888888877


Q ss_pred             hc------------------------------------------------------------------------------
Q 022200          130 EN------------------------------------------------------------------------------  131 (301)
Q Consensus       130 ~~------------------------------------------------------------------------------  131 (301)
                      ..                                                                              
T Consensus       224 ~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  303 (631)
T PHA02792        224 DKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT  303 (631)
T ss_pred             HcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh
Confidence            62                                                                              


Q ss_pred             ----------------HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCC--C
Q 022200          132 ----------------VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG--S  193 (301)
Q Consensus       132 ----------------~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g--~  193 (301)
                                      ..+++++|++.|+++.  ...+..+++.|+..|+.+++++|+++      |++++.+|.+|  .
T Consensus       304 ~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~------GADIN~kD~~g~~~  375 (631)
T PHA02792        304 DSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKN------GNVVVEDDDNIINI  375 (631)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHc------CCchhhhcCCCCCh
Confidence                            2333344444444432  11245567777777777788777775      77777777664  5


Q ss_pred             cHHHHHHHH----------HHHhh-----hhhCCCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHH
Q 022200          194 ILLHISISR----------KLEST-----VRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPL  258 (301)
Q Consensus       194 tpLh~A~~~----------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  258 (301)
                      ||||+|+..          +|+++     .+|..|+||||+|+..... .....++.       .+......+..++|++
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~-eivelLLs-------~GADIN~kD~~G~TpL  447 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSV-SLVEWLID-------NGADINITTKYGSTCI  447 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCH-HHHHHHHH-------CCCCCCCcCCCCCCHH
Confidence            777776554          23333     6677777888777643221 11222222       3333444455666776


Q ss_pred             HHHHH
Q 022200          259 VVAIL  263 (301)
Q Consensus       259 ~va~l  263 (301)
                      +.|..
T Consensus       448 ~~A~~  452 (631)
T PHA02792        448 GICVI  452 (631)
T ss_pred             HHHHH
Confidence            66654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.1e-24  Score=195.68  Aligned_cols=175  Identities=10%  Similarity=0.024  Sum_probs=146.0

Q ss_pred             ccCCCHHHHHHHHhC---CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC--CHHHHHHHHHhCCch-hhhcCCCC
Q 022200           14 KSRTDQRLNEAAQAG---NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG--HVNFALEIMRLKPSF-ARKQNQYG   87 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~-~~~~~~~g   87 (301)
                      +..|.||||+|+..|   +.++|+.||++|++++....   .|+||||+|+..+  +.+++++|++.|+.. .+..+..+
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~---~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN---EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC---CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            467899999999997   59999999999999986654   4999999999977  799999999996532 24467779


Q ss_pred             CcHHHHHHH--CCCHHHHHHHhh-cCCccceecCC-----CCCchhHHHHhc-HHHHHHHHHhCCcchh-------cccc
Q 022200           88 CSPLHLALQ--NSHTQMVLRLID-VDRNLVRVQGR-----EGVTPLHYVAEN-VDLLYKFLTACPKSIL-------QVTI  151 (301)
Q Consensus        88 ~tpLh~A~~--~~~~~~v~~Ll~-~~~~~~~~~d~-----~g~tpLh~A~~~-~~~~~~lL~~~~~~~~-------~~d~  151 (301)
                      .+|||.++.  +++.+++++|++ .+.+ ++....     .|.+|+++++.. ..+++++|++.|++++       ..+.
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIR-PSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDS  193 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCC-hhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccC
Confidence            999999988  899999999997 4455 555532     789999999999 9999999999999995       3455


Q ss_pred             CCCcHHHH-H------HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHH
Q 022200          152 RKETALYV-A------AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI  198 (301)
Q Consensus       152 ~g~t~Lh~-A------~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~  198 (301)
                      .+.+|+.+ .      ....+.+++++|+++      |+++|.+|.+|.||||+
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~------GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDN------NVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHC------CCCCCCCCCCCCCHHHH
Confidence            55555443 2      456789999999997      99999999999999996

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-24  Score=186.15  Aligned_cols=203  Identities=21%  Similarity=0.169  Sum_probs=171.6

Q ss_pred             cccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcH
Q 022200           11 QKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        11 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      .++.++..-.+..|+..|+.+-|+.|+..|.+++....   +|.|+||-+|.-.+.+||++|+++++++ +..|..|+||
T Consensus        34 ~~v~f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~---DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtP  109 (527)
T KOG0505|consen   34 PKVRFEDSAVFLEACSRGDLEEVRKLLNRGASPNLCNV---DGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTP  109 (527)
T ss_pred             CcccCCchHHHHhccccccHHHHHHHhccCCCccccCC---ccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCc
Confidence            45566666689999999999999999999987744333   5999999999999999999999999988 8889999999


Q ss_pred             HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc----------------------------HHHHHHHHHhC
Q 022200           91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN----------------------------VDLLYKFLTAC  142 (301)
Q Consensus        91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----------------------------~~~~~~lL~~~  142 (301)
                      ||.|+..|+..++++|++.|++ +...+..|..|+-.+..-                            ...+..+ +..
T Consensus       110 lhaaascg~~~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~-l~~  187 (527)
T KOG0505|consen  110 LHAAASCGYLNIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQW-LNA  187 (527)
T ss_pred             chhhcccccHHHHHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHH-Hhc
Confidence            9999999999999999999999 777777777776433221                            1122222 237


Q ss_pred             CcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhh
Q 022200          143 PKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRN  210 (301)
Q Consensus       143 ~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n  210 (301)
                      |.+.+..+..|.|.||.|+..|..++.++|+++      |.+++.+|.+||||||.|+..       +|+++     .++
T Consensus       188 G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a------g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  188 GAELDARHARGATALHVAAANGYTEVAALLLQA------GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             cccccccccccchHHHHHHhhhHHHHHHHHHHh------ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence            777788888899999999999999999999997      999999999999999999988       67777     888


Q ss_pred             CCCCchhhhhhhhhh
Q 022200          211 FGGREGSSLATVEIA  225 (301)
Q Consensus       211 ~~g~tpl~~a~~~~~  225 (301)
                      ..|+||++++..+..
T Consensus       262 ~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  262 KMGETPLDVADEEEL  276 (527)
T ss_pred             hcCCCCccchhhhhH
Confidence            999999999966544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=192.72  Aligned_cols=199  Identities=11%  Similarity=0.056  Sum_probs=151.6

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhh-----hcCCCCCChHHHHH------HHcCCHHHHHHHHHhCCchhhhcC
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQ-----IDQVPFVDTHLHIA------ASMGHVNFALEIMRLKPSFARKQN   84 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~g~t~Lh~A------~~~g~~~~v~~Ll~~~~~~~~~~~   84 (301)
                      .+-+|++.|...+++++|+.|++.|+++...     ..+++-..|.||+.      ...++.++++.|+++|+++ +.+|
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd  232 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRD  232 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCC
Confidence            5678999999999999999999999987411     12222344566643      3557889999999999877 8889


Q ss_pred             CCCCcHHHH--HHHCCCHHHHHHHhh--------------------------------cCCcccee--------------
Q 022200           85 QYGCSPLHL--ALQNSHTQMVLRLID--------------------------------VDRNLVRV--------------  116 (301)
Q Consensus        85 ~~g~tpLh~--A~~~~~~~~v~~Ll~--------------------------------~~~~~~~~--------------  116 (301)
                      ..|.||||+  ++..|+.|++++|++                                +|++ ...              
T Consensus       233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~  311 (672)
T PHA02730        233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDV  311 (672)
T ss_pred             CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhh
Confidence            999999985  555677999999999                                5666 444              


Q ss_pred             ------cCCCCCc---------------------hhHHHHhc----HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200          117 ------QGREGVT---------------------PLHYVAEN----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus       117 ------~d~~g~t---------------------pLh~A~~~----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                            .+..|.+                     .||.-...    ..+++++|+++|++++.. ..|.||||+|+..++
T Consensus       312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nn  390 (672)
T PHA02730        312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNN  390 (672)
T ss_pred             hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcC
Confidence                  4555544                     45554443    678889999999999975 789999998888774


Q ss_pred             ----HHHHHHHHHhhhhcCccc--ccccccCCCCcHHHH---HH----------------HHHHHhh-----hhhCCCCc
Q 022200          166 ----LKVLKVMLGWLRYVNKDD--IINRKDDEGSILLHI---SI----------------SRKLEST-----VRNFGGRE  215 (301)
Q Consensus       166 ----~~~~~~Ll~~~~~~~~~~--~~~~~d~~g~tpLh~---A~----------------~~~Ll~~-----~~n~~g~t  215 (301)
                          .+++++|+++      |+  +++.+|.+|.||||.   |.                ..+|+++     .+|..|+|
T Consensus       391 n~i~~eIvelLIs~------Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~T  464 (672)
T PHA02730        391 NIVDVNVVRFIVEN------NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKT  464 (672)
T ss_pred             CcchHHHHHHHHHc------CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCC
Confidence                7999999985      65  688889999999984   32                1256666     78889999


Q ss_pred             hhhhhhhh
Q 022200          216 GSSLATVE  223 (301)
Q Consensus       216 pl~~a~~~  223 (301)
                      |||+|+..
T Consensus       465 PLh~Aa~~  472 (672)
T PHA02730        465 LLYYAVDV  472 (672)
T ss_pred             HHHHHHHh
Confidence            99999764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.7e-23  Score=203.85  Aligned_cols=159  Identities=21%  Similarity=0.251  Sum_probs=145.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .+.++||.||..|+.++++.|++.|.++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHh
Confidence            4679999999999999999999999886 88899999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------H
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------K  203 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~  203 (301)
                       ...++++|.+.++..+.  ..+.++||.|+..|+.+++++|+++      |++++.+|.+|+||||+|+..       +
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~------Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ------GLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence             88999999988776543  4577999999999999999999996      999999999999999999988       6


Q ss_pred             HHhh-----hhhCCC-Cchhhhh
Q 022200          204 LEST-----VRNFGG-REGSSLA  220 (301)
Q Consensus       204 Ll~~-----~~n~~g-~tpl~~a  220 (301)
                      |+++     ..|..| .||.+++
T Consensus       674 Ll~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        674 LIMNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHH
Confidence            7766     667777 8999887

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.1e-24  Score=170.31  Aligned_cols=191  Identities=15%  Similarity=0.168  Sum_probs=156.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      .+|.+.++.|+-+|+.+.+...|..+...+....   .+++|+.+++.+-+.+.+..+.+   +.+|..|..|.|||.||
T Consensus        94 p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~---~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWA  167 (296)
T KOG0502|consen   94 PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSL---MPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWA  167 (296)
T ss_pred             chhhhhhhhcCCCCCcceeeeeecccccCCcccc---ccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHH
Confidence            3344556666666666666666655554433222   36788888887777776655554   34577899999999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      +..|++++|++||+.|++ +....++..++|.+|+.. ...++++|+.++.|+|..|.+|-|||.+|++.++.+|++.|+
T Consensus       168 aa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  168 AAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             HhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHH
Confidence            999999999999999999 899999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HhhhhcCcccccccccCCCCcHHHHHHHH------HHHh-----hhhhCCCCchhh
Q 022200          174 GWLRYVNKDDIINRKDDEGSILLHISISR------KLES-----TVRNFGGREGSS  218 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~tpLh~A~~~------~Ll~-----~~~n~~g~tpl~  218 (301)
                      +.      |++++..|..|++++..|+..      ..|+     ..+|+.-++|+|
T Consensus       247 ~s------GAd~t~e~dsGy~~mdlAValGyr~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  247 NS------GADVTQEDDSGYWIMDLAVALGYRIVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             hc------CCCcccccccCCcHHHHHHHhhhHHHHHHHHHHHHHHhhcccCCCCCC
Confidence            85      999999999999999999887      2222     277877888875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7.9e-23  Score=161.79  Aligned_cols=134  Identities=14%  Similarity=0.137  Sum_probs=112.2

Q ss_pred             CCChHHHHHHHcCCH----HHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHH---HHHHhhcCCccceecC-CCCCc
Q 022200           52 FVDTHLHIAASMGHV----NFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQM---VLRLIDVDRNLVRVQG-REGVT  123 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~---v~~Ll~~~~~~~~~~d-~~g~t  123 (301)
                      .+.++||.||+.|+.    ++++.|++.+..+ +.+|..|+||||+|+..|+.+.   +++|++.|++ ++.+| ..|.|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g~T   96 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTGNT   96 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCCCc
Confidence            377889999999998    4555666666544 7778899999999999887654   7899999998 88888 58999


Q ss_pred             hhHHHHhc-HHHHHHHHH-hCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCC
Q 022200          124 PLHYVAEN-VDLLYKFLT-ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGS  193 (301)
Q Consensus       124 pLh~A~~~-~~~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~  193 (301)
                      |||+|+.. ...++++|+ +.|++++.+|..|+||||+|+..++.+++++|+++      |++++.++..|.
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~------ga~~~~~~~~~~  162 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN------GAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcccCCc
Confidence            99999988 777788887 47999999999999999999999999999999986      888888887764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.3e-22  Score=181.93  Aligned_cols=178  Identities=12%  Similarity=0.029  Sum_probs=113.0

Q ss_pred             ccCCCHHHHHHHHhC-------CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC--CHHHHHHHHHhCCch-----
Q 022200           14 KSRTDQRLNEAAQAG-------NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG--HVNFALEIMRLKPSF-----   79 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~-----   79 (301)
                      +..|.||||+|+..+       +.++++.|+++|++++..+.   .|.||||+|+...  +.++++.|++..-..     
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~---~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~  248 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTY---REHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN  248 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCC---CCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence            455999999999999       89999999999999877655   4999999999999  777887776641100     


Q ss_pred             ----------------hh--h-----------------------------------------------------------
Q 022200           80 ----------------AR--K-----------------------------------------------------------   82 (301)
Q Consensus        80 ----------------~~--~-----------------------------------------------------------   82 (301)
                                      ++  .                                                           
T Consensus       249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI  328 (631)
T PHA02792        249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI  328 (631)
T ss_pred             HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence                            00  0                                                           


Q ss_pred             ---c---CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCC--CchhHHHHhc-H---HHHHHHHHhCCcchhccc
Q 022200           83 ---Q---NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREG--VTPLHYVAEN-V---DLLYKFLTACPKSILQVT  150 (301)
Q Consensus        83 ---~---~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g--~tpLh~A~~~-~---~~~~~lL~~~~~~~~~~d  150 (301)
                         .   ...+..+++.|+..|+.+++++|+++|++ ++.+|..|  .||||+|+.. .   ..++++|+++|++++.+|
T Consensus       329 d~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD  407 (631)
T PHA02792        329 DEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKID  407 (631)
T ss_pred             HCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccc
Confidence               0   00123345555556666666666666665 55555443  3556655444 1   234455555666666666


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHH
Q 022200          151 IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISIS  201 (301)
Q Consensus       151 ~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~  201 (301)
                      ..|.||||+|+..++.+++++|+++      |++++.+|..|+||||+|+.
T Consensus       408 ~~G~TPLh~Aa~~~n~eivelLLs~------GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        408 KHGRSILYYCIESHSVSLVEWLIDN------GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHH
Confidence            6666666666666666666666654      66666666666666666543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.3e-22  Score=196.44  Aligned_cols=179  Identities=18%  Similarity=0.148  Sum_probs=139.1

Q ss_pred             cccCCCHHHH-HHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcC---CHHHHHHHHHhCCc-----hh---
Q 022200           13 IKSRTDQRLN-EAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG---HVNFALEIMRLKPS-----FA---   80 (301)
Q Consensus        13 ~~~~~~~~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~-----~~---   80 (301)
                      .+..|.|||| .|+..++.++++.|++.+.    . +  ..|.||||.|+..+   ...+++.+...++.     ..   
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~-~--~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~  120 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSC----R-G--AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQ  120 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCC----C-C--CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccc
Confidence            3467899999 8889899999999999886    1 1  24999999998722   12333444433322     01   


Q ss_pred             -hhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecC--------------CCCCchhHHHHhc-HHHHHHHHHhCCc
Q 022200           81 -RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--------------REGVTPLHYVAEN-VDLLYKFLTACPK  144 (301)
Q Consensus        81 -~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~-~~~~~~lL~~~~~  144 (301)
                       ...+..|.||||+|+..|+.+++++|+++|++ ++.++              ..|.||||.|+.. ..+++++|++.|+
T Consensus       121 ~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       121 YTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence             11235799999999999999999999999998 66543              3589999999999 8999999999999


Q ss_pred             chhccccCCCcHHHHHHHcC---------CHHHHHHHHHhhhhcCccccc----ccccCCCCcHHHHHHHH
Q 022200          145 SILQVTIRKETALYVAAKND---------KLKVLKVMLGWLRYVNKDDII----NRKDDEGSILLHISISR  202 (301)
Q Consensus       145 ~~~~~d~~g~t~Lh~A~~~g---------~~~~~~~Ll~~~~~~~~~~~~----~~~d~~g~tpLh~A~~~  202 (301)
                      +++..|..|+||||+|+..+         ...+.+++++.+..   ..+.    +..|.+|.||||+|+..
T Consensus       200 din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~---~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK---LRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCChHhhhhhcCCCCCCchhhhhhc
Confidence            99999999999999999987         34466777765322   2233    66899999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=2.6e-22  Score=151.52  Aligned_cols=141  Identities=21%  Similarity=0.169  Sum_probs=126.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHH
Q 022200           56 HLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDL  134 (301)
Q Consensus        56 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~  134 (301)
                      .+.+|+..+....|+.||+..++.++.+|.+|+||||-|+++|+.+|++.|+..|++ .+.+...||||||.||.. +.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            456799999999999999999999999999999999999999999999999999999 999999999999999999 999


Q ss_pred             HHHHHHhCCcchhccccCCCcHHHHHHHcCCH-HHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          135 LYKFLTACPKSILQVTIRKETALYVAAKNDKL-KVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       135 ~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+.+|+++|+|++.......||||+||...+. ..+++|+.     .++..+..++..+.||+.+|-+.
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~-----dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH-----DRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh-----ccccChhhhcCccchHHHHHHHh
Confidence            99999999999999999999999999988765 56677765     35677777778888888887655

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1e-21  Score=156.13  Aligned_cols=124  Identities=16%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhC-----CchhhhcCCCCCcHHHHHHHCCC----HHHHHHHhhcCCccceecCC-CC
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLK-----PSFARKQNQYGCSPLHLALQNSH----TQMVLRLIDVDRNLVRVQGR-EG  121 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~tpLh~A~~~~~----~~~v~~Ll~~~~~~~~~~d~-~g  121 (301)
                      .|.||||+|+..|+.++++.|+...     +..++.+|..|.||||+|+..|+    .+++++|++.|++ ++.++. .|
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~~~~g   98 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQEMLEG   98 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCCcCCC
Confidence            4999999999999999999986532     23357889999999999999998    5899999999999 888885 99


Q ss_pred             CchhHHHHhc-HHHHHHHHHh-CCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhh
Q 022200          122 VTPLHYVAEN-VDLLYKFLTA-CPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWL  176 (301)
Q Consensus       122 ~tpLh~A~~~-~~~~~~lL~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~  176 (301)
                      +||||+|+.. ..+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++.
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999 8888888886 59999999999999999999999999999999873

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=155.24  Aligned_cols=138  Identities=12%  Similarity=0.056  Sum_probs=117.6

Q ss_pred             cccCCCHHHHHHHHhCCHH----HHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHH---HHHHHHhCCchhhhcC-
Q 022200           13 IKSRTDQRLNEAAQAGNVD----ALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNF---ALEIMRLKPSFARKQN-   84 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~~~~-   84 (301)
                      .+.++.++||.|++.|+++    +++.|++.+..++....   .|+||||+|+..|+.+.   +++|++.++++ +.++ 
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~---~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~   91 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH---HGRQCTHMVAWYDRANAVMKIELLVNMGADI-NAREL   91 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC---CCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCC
Confidence            4566778999999999984    45566677777654433   49999999999988654   78999999877 7777 


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHhh-cCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCc
Q 022200           85 QYGCSPLHLALQNSHTQMVLRLID-VDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKET  155 (301)
Q Consensus        85 ~~g~tpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t  155 (301)
                      ..|.||||+|+..|+.+++++|++ .+++ ++.+|..|.||||+|+.. ...++++|+.+|++++.++..|..
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            589999999999999999999995 7888 899999999999999998 888999999999999998887753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2e-21  Score=165.64  Aligned_cols=157  Identities=12%  Similarity=0.109  Sum_probs=129.6

Q ss_pred             cccccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhc-CCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhc-CCC
Q 022200            9 QHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQID-QVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ-NQY   86 (301)
Q Consensus         9 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~   86 (301)
                      .+.+......++||.|++.|+.++++.|++.|++++.... ....|.||||+|+..|+.++++.|+++|+++ +.+ +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCC
Confidence            4556566677789999999999999999999999865431 1125999999999999999999999999877 654 568


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      |.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...+..++.  |.   ..+..+.+|++.+   ++
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---cc
Confidence            99999999999999999999999999 999999999999999987 445555443  32   2456678888865   47


Q ss_pred             HHHHHHHHHh
Q 022200          166 LKVLKVMLGW  175 (301)
Q Consensus       166 ~~~~~~Ll~~  175 (301)
                      .+++++|+.+
T Consensus       175 ~ei~~~Lish  184 (300)
T PHA02884        175 FDILKILVSH  184 (300)
T ss_pred             HHHHHHHHHH
Confidence            8999999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=6.3e-22  Score=179.22  Aligned_cols=195  Identities=19%  Similarity=0.154  Sum_probs=168.8

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.|.||.|+.+|+.++++.|++..+-......   .|.+|||+|+..|+.++++.++..+ +..+.....|.||||.
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d~---kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT---KGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHL  121 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc---cCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccch
Confidence            34788999999999999999999998876654443   4999999999999999999999998 4458889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcch--------hccccCCCcHHHHHHHcC
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSI--------LQVTIRKETALYVAAKND  164 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~--------~~~d~~g~t~Lh~A~~~g  164 (301)
                      |+..|+.+++.+|++++++ +..+|..+.|+|-.|++. ...++.+|++...+.        ..++..+.+|||+|+++|
T Consensus       122 aaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            9999999999999999999 899999999999999999 777777776653322        234566889999999999


Q ss_pred             CHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhh
Q 022200          165 KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLA  220 (301)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a  220 (301)
                      +.++++.|++.      |.++|.....| |+||.|+.-       +|++.     ++|.+|+|+|++.
T Consensus       201 h~~~~~~ll~a------g~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  201 HVECMQALLEA------GFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDII  261 (854)
T ss_pred             hHHHHHHHHhc------CCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHH
Confidence            99999999997      99999877655 899999877       66666     9999999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=3.7e-22  Score=166.96  Aligned_cols=144  Identities=24%  Similarity=0.270  Sum_probs=126.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC-----CCHHHHHHHhhcCCccceec-CCCCCchh
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN-----SHTQMVLRLIDVDRNLVRVQ-GREGVTPL  125 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~-----~~~~~v~~Ll~~~~~~~~~~-d~~g~tpL  125 (301)
                      .|+|+||||+.++++++|+.||+.+-..++.++.-|+||+++++..     .+.++|..|...|-  +|.+ ...|+|+|
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKASQHGQTAL  344 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhhhhcchhh
Confidence            4999999999999999999999999888899999999999998764     36778888887764  4554 35799999


Q ss_pred             HHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          126 HYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       126 h~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++|+.. ...+++.|+.+|+|+|..|.+|.|+|++|+.+||.+++++||..     .++++...|.+|.|+|.+|-..
T Consensus       345 MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHHhc
Confidence            999999 88899999999999999999999999999999999999999974     5888999999999999988665

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=7.1e-22  Score=154.71  Aligned_cols=169  Identities=20%  Similarity=0.141  Sum_probs=149.5

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      --+-+|+.+++.+.+++.+..+.+.-.   +..|+  +|.|||.+|+..|++++|+.||..|+++ ....+...|+|.+|
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n~V---N~~De--~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLA  200 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNNKV---NACDE--FGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLA  200 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhccc---cCccc--cCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHH
Confidence            345568999999998887776655433   33343  6999999999999999999999999987 67788889999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      +..|..++|++||+++.+ +|..|.+|-|||-+|+.. .-.|++.|+..|++++..+..|.+++..|+..|.. +|+..+
T Consensus       201 t~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             hcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHH
Confidence            999999999999999999 999999999999999999 88999999999999999999999999999999988 888888


Q ss_pred             HhhhhcCcccccccccCCCCcHHH
Q 022200          174 GWLRYVNKDDIINRKDDEGSILLH  197 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~tpLh  197 (301)
                      +.      .++...+|..-+||+|
T Consensus       279 e~------h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  279 EK------HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HH------HHHHHhhcccCCCCCC
Confidence            74      7788888988888876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=6.6e-21  Score=143.96  Aligned_cols=145  Identities=24%  Similarity=0.205  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      ....+.+|+..|.+..|+.||+..++..+..|.  +|+||||.|+.+|+.+||+.|+-.+++. +.+...|+||||-||.
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~--D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDE--DEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcccccccccc--ccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhc
Confidence            334688999999999999999999988777665  6999999999999999999999999887 7889999999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--HHHHH-HHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLY-KFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~~~~~-~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      -++.+++.+||++|++ ++......+||||+|+..  ....+ .+|...+..+..++..+.||+.+|-+.+-
T Consensus       140 WnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             ccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999999999999 999999999999999988  44444 45556677888889999999999977653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.5e-21  Score=162.02  Aligned_cols=159  Identities=22%  Similarity=0.241  Sum_probs=138.5

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHc-----CCHHHHHHHHHhCCchhhhcCCCC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM-----GHVNFALEIMRLKPSFARKQNQYG   87 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g   87 (301)
                      .+..|+|+||||+..+++++|+.||+.|.-..+..+.  -|+||+++|+..     .+.++|..|+..|... -.....|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr--AGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~g  340 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR--AGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHG  340 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCccccccccc--ccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhc
Confidence            3578999999999999999999999998765554444  499999998853     4678999999887433 3446789


Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhC-CcchhccccCCCcHHHHHHHcCC
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTAC-PKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~-~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      +|+|++|+.+|+.++|+.||..|++ +|++|.+|.|+|++|+.. ..+++++|+.. ++++...|.+|.|+|.+|...||
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            9999999999999999999999999 999999999999999999 88888877765 56889999999999999999999


Q ss_pred             HHHHHHHHHh
Q 022200          166 LKVLKVMLGW  175 (301)
Q Consensus       166 ~~~~~~Ll~~  175 (301)
                      .+|.-+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9999988765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=6.1e-21  Score=149.43  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhC------CchhhhcCCCCCcHHHHHHHCCCH---HHHHHHhhcCCccceecC-CCC
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLK------PSFARKQNQYGCSPLHLALQNSHT---QMVLRLIDVDRNLVRVQG-REG  121 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~g~tpLh~A~~~~~~---~~v~~Ll~~~~~~~~~~d-~~g  121 (301)
                      .|.||||+|+..|+..  +.+...+      +.....+|..|.||||+|+..|+.   +++++|++.|++ ++.++ ..|
T Consensus        16 ~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~~~~~g   92 (154)
T PHA02736         16 EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGKERVFG   92 (154)
T ss_pred             CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccccCCCCC
Confidence            4889999999988842  2222211      123355688899999999998876   468889999988 88887 489


Q ss_pred             CchhHHHHhc-HHHHHHHHHh-CCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          122 VTPLHYVAEN-VDLLYKFLTA-CPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       122 ~tpLh~A~~~-~~~~~~lL~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +||||+|+.. ..+++++|+. .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999988 7777777776 5889999999999999999999999999999885

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=149.37  Aligned_cols=128  Identities=19%  Similarity=0.190  Sum_probs=109.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHc------ChhhhhhhcCCCCCChHHHHHHHcCC----HHHHHHHHHhCCchhhh
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWE------DAYLIDQIDQVPFVDTHLHIAASMGH----VNFALEIMRLKPSFARK   82 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~   82 (301)
                      .+..+.|+||+|++.|+.++++.|+..      +.+++....   .|.||||+|+..|+    .+++++|++.++++ +.
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~---~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~   92 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD---AGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NA   92 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC---CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CC
Confidence            356789999999999999999998653      344433332   59999999999999    58899999998877 67


Q ss_pred             cCC-CCCcHHHHHHHCCCHHHHHHHhh-cCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           83 QNQ-YGCSPLHLALQNSHTQMVLRLID-VDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        83 ~~~-~g~tpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      ++. .|.||||+|+..++.+++++|++ .+++ ++.+|..|+||||+|+.. ...++++|+++++.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            674 89999999999999999999998 4887 899999999999999999 77888888887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3e-20  Score=158.44  Aligned_cols=142  Identities=15%  Similarity=0.024  Sum_probs=120.4

Q ss_pred             CC-hHHHHHHHcCCHHHHHHHHHhCCchhhhc----CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceec-CCCCCchhH
Q 022200           53 VD-THLHIAASMGHVNFALEIMRLKPSFARKQ----NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQ-GREGVTPLH  126 (301)
Q Consensus        53 g~-t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh  126 (301)
                      |+ ++||.|+..|+.++++.|+++|+++ +.+    +..|.||||+|+..++.+++++|+++|++ ++.+ +..|.||||
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh  109 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLY  109 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHH
Confidence            44 5677778889999999999999877 555    46899999999999999999999999999 8886 468999999


Q ss_pred             HHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH---
Q 022200          127 YVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR---  202 (301)
Q Consensus       127 ~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~---  202 (301)
                      +|+.. ..+++++|+..|++++.+|..|.||||+|+..++.+++..+.        +..   .+..+.+|++++...   
T Consensus       110 ~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~n~ei~  178 (300)
T PHA02884        110 ISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--------DNE---ISNFYKHPKKILINFDIL  178 (300)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--------CCc---ccccccChhhhhccHHHH
Confidence            99998 889999999999999999999999999999999888775543        322   567788899876432   


Q ss_pred             -HHHhh
Q 022200          203 -KLEST  207 (301)
Q Consensus       203 -~Ll~~  207 (301)
                       .|+++
T Consensus       179 ~~Lish  184 (300)
T PHA02884        179 KILVSH  184 (300)
T ss_pred             HHHHHH
Confidence             66666

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=6.5e-20  Score=143.58  Aligned_cols=130  Identities=17%  Similarity=0.217  Sum_probs=104.2

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcCh------hhhhhhcCCCCCChHHHHHHHcCCH---HHHHHHHHhCCchhhh
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDA------YLIDQIDQVPFVDTHLHIAASMGHV---NFALEIMRLKPSFARK   82 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~   82 (301)
                      ..+..|.||||+|++.|++.  ..++..+.      ......+  .+|.||||+|+..|+.   ++++.|++.++++ +.
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d--~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~   86 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYN--RHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NG   86 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhc--CCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cc
Confidence            34677999999999999843  22222211      1112222  2599999999999987   4688999999876 66


Q ss_pred             cC-CCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchh
Q 022200           83 QN-QYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSIL  147 (301)
Q Consensus        83 ~~-~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~  147 (301)
                      ++ ..|.||||+|+..|+.+++++|++. +++ ++.+|..|.||||+|+.. ...++++|+..|++++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            77 5899999999999999999999985 777 899999999999999998 8889999999998764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.4e-20  Score=163.53  Aligned_cols=181  Identities=19%  Similarity=0.155  Sum_probs=154.6

Q ss_pred             cccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcH
Q 022200           11 QKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        11 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      ..++.++.|+||.+|...+.++|++|++.|++++.....   |+||||.|+..|+..++++|+.+++++.. .+.+|..|
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e---~wtPlhaaascg~~~i~~~li~~gA~~~a-vNsdg~~P  142 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNE---GWTPLHAAASCGYLNIVEYLIQHGANLLA-VNSDGNMP  142 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccc---cCCcchhhcccccHHHHHHHHHhhhhhhh-ccCCCCCc
Confidence            345678999999999999999999999999999877664   99999999999999999999999998744 47777776


Q ss_pred             HHHHHHC-------------C-CH------------HHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC
Q 022200           91 LHLALQN-------------S-HT------------QMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP  143 (301)
Q Consensus        91 Lh~A~~~-------------~-~~------------~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~  143 (301)
                      +..+...             | .+            +=++..+..|.. .+..+..|-|.||.|+.+ ...+.++|+.+|
T Consensus       143 ~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  143 YDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             cccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHHhc
Confidence            6543211             1 11            112233346666 788888899999999999 999999999999


Q ss_pred             cchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          144 KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       144 ~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+++.+|.+||||||.|+..|+.+++++|+++      |++++.....|.||+.+|..-
T Consensus       222 ~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~------ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  222 YSVNIKDYDGWTPLHAAAHWGQEDACELLVEH------GADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cCcccccccCCCcccHHHHhhhHhHHHHHHHh------hcccchhhhcCCCCccchhhh
Confidence            99999999999999999999999999999997      999999999999999999875

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=9e-19  Score=160.63  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=140.2

Q ss_pred             ccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhhhh--cCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhh------
Q 022200           14 KSRTDQRLNEAAQA---GNVDALYELIWEDAYLIDQI--DQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARK------   82 (301)
Q Consensus        14 ~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------   82 (301)
                      ...|+|.||.|.-+   ++-++++.|++..|...+..  ++...|.||||+|+.+.+.++|++|++.|+++...      
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            45689999999984   45688999999888765432  22236999999999999999999999999976321      


Q ss_pred             --cC--------------CCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           83 --QN--------------QYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        83 --~~--------------~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                        .|              ..|..||.+|+..++.+++++|+++|+| ++.+|..|+|.||..+.. ..++..+++++|++
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence              11              2467899999999999999999999999 999999999999999999 89999999999999


Q ss_pred             --hhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          146 --ILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       146 --~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                        ...+|.+|.|||-+|++.|+.++.+.+++.
T Consensus       299 ~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  299 ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence              888999999999999999999999999984

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.79  E-value=2.7e-19  Score=162.31  Aligned_cols=178  Identities=23%  Similarity=0.178  Sum_probs=155.3

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +.++.+|||+|++.|+.++++.++.++...+....   +|.||||.|+..||.+++.+|+.++++. -.+|..+.|+|.+
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~---e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldl  154 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI---ENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDL  154 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCcccc---cCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHH
Confidence            36788999999999999999999999855444444   5999999999999999999999999887 5568999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCcc-------ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           94 ALQNSHTQMVLRLIDVDRNL-------VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      |+..|..++++.|++..-..       ...++-.+.+|||.|+.+ ..++++.|++.|.++|.... .-|+||.|+..|.
T Consensus       155 A~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~-~gtalheaalcgk  233 (854)
T KOG0507|consen  155 ASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTE-DGTALHEAALCGK  233 (854)
T ss_pred             HHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccc-cchhhhhHhhcCc
Confidence            99999999999999863110       223455678999999999 99999999999999997654 5589999999999


Q ss_pred             HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+++.+|++.      |.+...+|.+|.|.|.+-...
T Consensus       234 ~evvr~ll~~------gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  234 AEVVRFLLEI------GINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             chhhhHHHhh------ccccccccccchHHHHHHHhc
Confidence            9999999996      999999999999999987766

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1e-19  Score=148.19  Aligned_cols=132  Identities=24%  Similarity=0.274  Sum_probs=109.8

Q ss_pred             HHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHH
Q 022200           25 AQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL  104 (301)
Q Consensus        25 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~  104 (301)
                      |+.|+.-.|+..|+.-....+..|.  .|.+|||+||+.|+..+++.|+..|+.+ +..+....||||+|+..|+.++|+
T Consensus         8 cregna~qvrlwld~tehdln~gdd--hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDD--HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccc--cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHH
Confidence            4555554555555433222222232  5899999999999999999999999877 777888899999999999999999


Q ss_pred             HHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200          105 RLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVA  160 (301)
Q Consensus       105 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A  160 (301)
                      .||+..++ ++..+..|.|||||||.. .+.+.+=|+.+|+.++..++.|.|||..|
T Consensus        85 kll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   85 KLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            99999999 999999999999999999 88888999999999999999999999876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=2.7e-19  Score=145.79  Aligned_cols=135  Identities=18%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             HHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHH
Q 022200           61 ASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFL  139 (301)
Q Consensus        61 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL  139 (301)
                      |+.|+.--|++-|+......+.-|..|.+|||+|+..|+..+++.||.+|+. ++..+....||||+|+.. ...++..|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHH
Confidence            5566655566666666666688899999999999999999999999999999 999999999999999999 77778888


Q ss_pred             HhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       140 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++..+|+|..+..|.||||+||..|...+.+-|+..      |+.++..+++|.|||..|--.
T Consensus        87 l~~kadvnavnehgntplhyacfwgydqiaedli~~------ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC------GAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc------cceeeecccCCCCchhhhchH
Confidence            888999999999999999999999999999999986      999999999999999988444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=3.2e-18  Score=121.18  Aligned_cols=89  Identities=27%  Similarity=0.355  Sum_probs=66.0

Q ss_pred             HHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCH
Q 022200           21 LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHT  100 (301)
Q Consensus        21 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~  100 (301)
                      ||+|++.|++++++.|++.+.++..       |+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-------~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-------GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-------SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-------CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            6788888888888888887665432       667888888888888888888877766 66677888888888888888


Q ss_pred             HHHHHHhhcCCccceecC
Q 022200          101 QMVLRLIDVDRNLVRVQG  118 (301)
Q Consensus       101 ~~v~~Ll~~~~~~~~~~d  118 (301)
                      +++++|+++|++ ++.+|
T Consensus        73 ~~~~~Ll~~g~~-~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGAD-VNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT--TTSS-
T ss_pred             HHHHHHHHcCCC-CCCcC
Confidence            888888888777 65543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=3.2e-18  Score=157.04  Aligned_cols=178  Identities=19%  Similarity=0.186  Sum_probs=149.1

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhh------hhhhcCCCCCChHHHHHHH---cCCHHHHHHHHHhCCchhhh----cC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYL------IDQIDQVPFVDTHLHIAAS---MGHVNFALEIMRLKPSFARK----QN   84 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~----~~   84 (301)
                      ..++..|...|.++.+..++..+...      ........-|+|.||.|..   .++.++++.|++..+..++.    ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            37889999999999988888766321      1111112359999999997   35569999999988766554    24


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHhhcCCccceec---------C--------------CCCCchhHHHHhc-HHHHHHHHH
Q 022200           85 QYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQ---------G--------------REGVTPLHYVAEN-VDLLYKFLT  140 (301)
Q Consensus        85 ~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~---------d--------------~~g~tpLh~A~~~-~~~~~~lL~  140 (301)
                      ..|.||||.|+.+.+.++|++|++.||| ++.+         |              ..|..||-+||+. +++++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            6899999999999999999999999998 5543         1              1378899999999 999999999


Q ss_pred             hCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccc--cccccCCCCcHHHHHHHH
Q 022200          141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI--INRKDDEGSILLHISISR  202 (301)
Q Consensus       141 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~--~~~~d~~g~tpLh~A~~~  202 (301)
                      ++|+|++.+|.+|+|.||+.+..-..++.+++|++      |++  ...++..|-|||-+|++-
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~------ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL------GANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhc------CCCccccccccCCCChHHHHHHh
Confidence            99999999999999999999999999999999997      766  888999999999999988

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=9.7e-19  Score=163.79  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      ..+++|-.||..|+-|.|+.|+.+|.++...+..   |.+||.+|+-.||..+|+.|+++.+++....|..+.|+|.+||
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkk---gf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKK---GFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccc---cchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            3455666666666666666666666665444332   6666666666666666666666666555555566666666666


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc--cCCCcHHHHHHHcCCHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT--IRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      ..|+.++|++||..|++ -..++....|||.+|... ...++.+|+..|+.|+.+.  +.|..||++|...||...++.|
T Consensus       833 sggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            66666666666666655 445555555555555555 5555555555555554432  3345555555555554444444


Q ss_pred             HH
Q 022200          173 LG  174 (301)
Q Consensus       173 l~  174 (301)
                      |+
T Consensus       912 l~  913 (2131)
T KOG4369|consen  912 LQ  913 (2131)
T ss_pred             hc
Confidence            44

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2.5e-17  Score=116.52  Aligned_cols=88  Identities=27%  Similarity=0.372  Sum_probs=62.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHH
Q 022200           57 LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLL  135 (301)
Q Consensus        57 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~  135 (301)
                      ||+|++.|+.++++.|++.+.+. +.    |.||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.. ..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            67778888888888888766544 22    77788888888888888888877777 777777777777777777 6667


Q ss_pred             HHHHHhCCcchhccc
Q 022200          136 YKFLTACPKSILQVT  150 (301)
Q Consensus       136 ~~lL~~~~~~~~~~d  150 (301)
                      +++|++.|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            777777777766553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=6.1e-17  Score=121.31  Aligned_cols=120  Identities=32%  Similarity=0.420  Sum_probs=98.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .|.||||+|+..|+.++++.|++.+... +.++..|.||||+|+..++.+++++|++.++. ++..+..|.||+|+|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence            4788888888888888888888887665 56677888888888888888888888888876 677778888888888888


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                       ...++++|+..+.+++..+..|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence             777888888888778888888888888888888888888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-17  Score=156.88  Aligned_cols=199  Identities=20%  Similarity=0.197  Sum_probs=175.9

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ++.+.+||.+|+-.|++.+|+.|++.-.++....|++  +.|+|.+||..|..++|++||..+++. ..++...+|||.+
T Consensus       787 dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrt--kdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsl  863 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRT--KDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccc--cCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhh
Confidence            4668899999999999999999999999988887775  899999999999999999999999877 6778899999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecC--CCCCchhHHHHhc-HHHHHHHHHhCCcchhcc-ccCCCcHHHHHHHcCCHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQG--REGVTPLHYVAEN-VDLLYKFLTACPKSILQV-TIRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~~  169 (301)
                      |..-|.+++++.||..|++ ++.+.  +.|-.||++|..+ .....+.|++.|.|+|.. ..+.+|+|-+|+..|+.+++
T Consensus       864 a~Sggy~~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hcCcchHHHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence            9999999999999999988 77664  6789999999999 888889999999999965 46788999999999999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh--------hhhCCCCchhhhhhhh
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST--------VRNFGGREGSSLATVE  223 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~--------~~n~~g~tpl~~a~~~  223 (301)
                      .+||.+      .+++..+-+.|.|||+-++..       +||..        ..+.++ |++.+++..
T Consensus       943 ~lLLa~------~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~d-talti~a~k 1004 (2131)
T KOG4369|consen  943 FLLLAA------QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWD-TALTIPANK 1004 (2131)
T ss_pred             HHHHHH------hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCC-ccceeecCC
Confidence            999987      899999999999999999888       67766        445444 667766543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=3.6e-16  Score=117.10  Aligned_cols=113  Identities=30%  Similarity=0.450  Sum_probs=105.2

Q ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHH
Q 022200           83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAA  161 (301)
Q Consensus        83 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~  161 (301)
                      +|..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+.. ...++++|++.+.+++..+..|.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            467899999999999999999999999988 688999999999999999 778999999999989999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       162 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ..++.+++++|++.      +.+.+..|..|.||+|+|...
T Consensus        82 ~~~~~~~~~~L~~~------~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          82 RNGNLDVVKLLLKH------GADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HcCcHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhc
Confidence            99999999999985      788899999999999999775

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=3.7e-16  Score=105.95  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=91.1

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      +..+.+++++|.++.|+.....|-+++....    |++|||+|+..|..+++++|+..|+++ +.+|+.|.|||.-|+..
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g----gR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIYG----GRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWE   77 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHhC----CcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHH
Confidence            4567889999999999999999977766653    899999999999999999999999987 78899999999999999


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHH
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY  127 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  127 (301)
                      ||.++|++||+.|++ -..+..+|.+.+-.
T Consensus        78 GH~~cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             hhHHHHHHHHHcCcc-cceeCCCchhHHhh
Confidence            999999999999999 77777888765544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=1.6e-14  Score=119.48  Aligned_cols=122  Identities=25%  Similarity=0.310  Sum_probs=107.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCC-----HHHHHHHhhcCC--ccceecCCCCCchh
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSH-----TQMVLRLIDVDR--NLVRVQGREGVTPL  125 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~-----~~~v~~Ll~~~~--~~~~~~d~~g~tpL  125 (301)
                      +.+++|.++..+..+++++++..+.++ +.++..|.||||+|+..++     .+++++|++.|+  +..+.+|..|.|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            778999999999999888888888888 8889999999999999998     899999999998  44777789999999


Q ss_pred             HHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          126 HYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       126 h~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      |+|+.. ...++++|+..|++++.++..|.|++++|+..++.++++.+++.
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999988 67888888888999988889999999999999999999888874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=3.1e-14  Score=117.84  Aligned_cols=125  Identities=26%  Similarity=0.260  Sum_probs=113.2

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCC-----HHHHHHHHHhCC--chhhhcCCCC
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGH-----VNFALEIMRLKP--SFARKQNQYG   87 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~~~g   87 (301)
                      ....++++.++..++.+.++.++..+.++... +.  .|.||||+|+..|+     .++++.|++.++  ...+.+|..|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DA--DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCcccc-cC--CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            34678999999999999999999999998443 33  59999999999999     999999999999  6768889999


Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP  143 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~  143 (301)
                      .||||+|+..|+.+++++|++.+++ ++.++..|.|++++|+.. ...+...+...+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999 899999999999999999 777888777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=4.4e-14  Score=95.93  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HH
Q 022200           55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VD  133 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~  133 (301)
                      --+.+++++|..+-|+..+..+.++ +.. ..|++|||+|+-+|+.+++++|+..|++ ++.+|+.|.|||..|++. ..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhH
Confidence            3467788899999998888888555 332 3789999999999999999999999998 888899999999888888 88


Q ss_pred             HHHHHHHhCCcchhccccCCCcHHHH
Q 022200          134 LLYKFLTACPKSILQVTIRKETALYV  159 (301)
Q Consensus       134 ~~~~lL~~~~~~~~~~d~~g~t~Lh~  159 (301)
                      .|+++|++.|++-..+..+|.+.+..
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhh
Confidence            88888888888888777788776543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=1e-14  Score=93.30  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=32.6

Q ss_pred             HhCC-cchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHH
Q 022200          140 TACP-KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS  199 (301)
Q Consensus       140 ~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A  199 (301)
                      ++.| .+++..|..|.||||+|+..|+.+++++|++.      +++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~------g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN------GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC------T--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC------cCCCCCCcCCCCCHHHhC
Confidence            4455 89999999999999999999999999999985      999999999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=1.9e-14  Score=91.98  Aligned_cols=56  Identities=30%  Similarity=0.608  Sum_probs=29.5

Q ss_pred             HHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHH
Q 022200           72 IMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYV  128 (301)
Q Consensus        72 Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  128 (301)
                      ||++++..++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            45666555577888888888888888888888888888888 888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=1.2e-13  Score=87.73  Aligned_cols=54  Identities=28%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHh
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI  107 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  107 (301)
                      |+||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888887665 667888888888888888888888876

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=3.6e-13  Score=128.39  Aligned_cols=105  Identities=23%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSH   99 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~   99 (301)
                      .|+.|+..|+.+.++.|++.|++++..+.   .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~---~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDY---DGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            58899999999999999999998765543   4999999999999999999999998877 7889999999999999999


Q ss_pred             HHHHHHHhhc-------CCccceecCCCCCchhHHHH
Q 022200          100 TQMVLRLIDV-------DRNLVRVQGREGVTPLHYVA  129 (301)
Q Consensus       100 ~~~v~~Ll~~-------~~~~~~~~d~~g~tpLh~A~  129 (301)
                      .+++++|+++       +++ .+..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            9999999998       777 7777777877766544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.5e-13  Score=118.33  Aligned_cols=114  Identities=25%  Similarity=0.258  Sum_probs=83.4

Q ss_pred             HHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHH
Q 022200           59 IAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYK  137 (301)
Q Consensus        59 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~  137 (301)
                      -|+..|.+++|+.++..-.++ ...+.+|.|+||-|+..||.+||++|++.|++ +|..|.+||||||+|+.. +..+++
T Consensus       556 DaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHH
Confidence            377788888888887765444 56677888888888888888888888888888 888888888888888877 666666


Q ss_pred             HHHhCCcchhccc-cCCCcHHHHHH--HcCCHHHHHHHHH
Q 022200          138 FLTACPKSILQVT-IRKETALYVAA--KNDKLKVLKVMLG  174 (301)
Q Consensus       138 lL~~~~~~~~~~d-~~g~t~Lh~A~--~~g~~~~~~~Ll~  174 (301)
                      .|.+.|+.+-... .++.|+..-+-  +.|..+|.+||..
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            6777776655433 45677765443  3577778888754

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=8.3e-13  Score=108.03  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      ..++|..++..|+.+....||..-..++..++   .|+++|..|+..|+.+++++|++.|+++...++..++||||+|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~---sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDP---SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCC---CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            45799999999999999999987444444433   499999999999999999999999999988889999999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHH
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLT  140 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~  140 (301)
                      +|+.++.++|++.|+. +...+.-|+|+-..|+.- ..+|+.++-
T Consensus        89 SGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999 899999999999999987 666666553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=4.9e-13  Score=127.48  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHH
Q 022200           56 HLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDL  134 (301)
Q Consensus        56 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~  134 (301)
                      .|+.|+..|+.++++.|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            578888899999999999888776 77788899999999999999999999999888 888899999999999888 778


Q ss_pred             HHHHHHhC-------CcchhccccCCCcHHHHHH
Q 022200          135 LYKFLTAC-------PKSILQVTIRKETALYVAA  161 (301)
Q Consensus       135 ~~~lL~~~-------~~~~~~~d~~g~t~Lh~A~  161 (301)
                      ++++|+.+       +++++..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            88888877       7777777777776665443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=5.3e-13  Score=117.24  Aligned_cols=119  Identities=21%  Similarity=0.235  Sum_probs=93.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      -.|.-|+..|.+|+|+..+.+-.|.....|+   |-|+||-|+-.||.+||+.|++.|+++ |..|.+||||||.|+..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdE---GITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDE---GITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCcc---chhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcC
Confidence            3577788889998888888876666555554   889999998889999999999888877 778889999999999989


Q ss_pred             CHHHHHHHhhcCCccceecCCCCCchhHHHHhc---HHHHHHHHHh
Q 022200           99 HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---VDLLYKFLTA  141 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~lL~~  141 (301)
                      +..+++.|++.|+..+-..-.++.|+..-+-..   ...|..+|..
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999988885555556777877665544   5566666643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=2.4e-12  Score=105.36  Aligned_cols=122  Identities=17%  Similarity=0.142  Sum_probs=110.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      -..||.-++..++.+-...||+.-.++ +.+|..|.|||..|+..|+.+++++||+.|++.-..++..+.||||+|+.. 
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            468999999999999999999874444 888999999999999999999999999999995555678899999999999 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +..+.++|++.|+.....+.-|+|+-.+|+.-|+.++|..+=.+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            89999999999999999999999999999999999998877443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2.7e-12  Score=81.47  Aligned_cols=53  Identities=32%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200          121 GVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus       121 g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      |+||||+|+.. ..+++++|++.|.+++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            34444444444 444444444444455555555555555555555555555553

...

>PF13962 PGG: Domain of unknown function

Probab=99.24  E-value=5.1e-12  Score=93.04  Aligned_cols=50  Identities=40%  Similarity=0.538  Sum_probs=42.0

Q ss_pred             hhhhcchhHHHHHHHHHHHHHHhhcCCCCcccCCCC---CC---CCC-ccccccccc
Q 022200          249 ITDENRNAPLVVAILITTATFQAALTPPQDLWGNNS---NN---TDF-ATNVAATSI  298 (301)
Q Consensus       249 ~~~~~~~t~l~va~liatv~faa~~~~Pgg~~~~~~---~~---~~~-~~~~f~~~~  298 (301)
                      ..++.+++.++||+|||||+|+|+|+|||||+|+++   .+   +++ .|++|.+++
T Consensus         3 ~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~n   59 (113)
T PF13962_consen    3 WLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISN   59 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHH
Confidence            346889999999999999999999999999988763   22   455 888888764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.87  E-value=2.2e-09  Score=99.49  Aligned_cols=100  Identities=22%  Similarity=0.317  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHH-cChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcC-CCCCcHHHHHHHCCCHHHHHH
Q 022200           28 GNVDALYELIW-EDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQN-QYGCSPLHLALQNSHTQMVLR  105 (301)
Q Consensus        28 g~~~~v~~Ll~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~A~~~~~~~~v~~  105 (301)
                      +....++.+++ .+.+..+..|.  +|+|+||+|+..+..+++++|+.+|.++ ..+| ..|+||||-|+.+|+++++-+
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~--~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDR--YGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHh--hccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHH
Confidence            33333444443 34444444444  6999999999999999999999998877 5556 579999999999999999999


Q ss_pred             HhhcCCccceecCCCCCchhHHHHhc
Q 022200          106 LIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus       106 Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      ||.+|.. +.++|++|.+||..-+.-
T Consensus       105 LL~~g~S-L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  105 LLSKGRS-LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHhcCCc-eEEecccCCCHHHHHhhc
Confidence            9999998 999999999999987763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.85  E-value=2.2e-09  Score=99.56  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=81.7

Q ss_pred             HHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCC-CCCchhHHHHhc-HHHHHHHHHhCCcchhcc
Q 022200           72 IMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHYVAEN-VDLLYKFLTACPKSILQV  149 (301)
Q Consensus        72 Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~  149 (301)
                      +-+...+..+.+|..|+|+||+|+..+..++++|||++|.+ +..+|. .|+||||-|+.+ +.+|+.+|+++|..+...
T Consensus        37 ~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~  115 (1267)
T KOG0783|consen   37 SEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK  115 (1267)
T ss_pred             HHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe
Confidence            33445566788999999999999999999999999999999 888885 699999999999 999999999999999999


Q ss_pred             ccCCCcHHHHHHHc
Q 022200          150 TIRKETALYVAAKN  163 (301)
Q Consensus       150 d~~g~t~Lh~A~~~  163 (301)
                      |.+|.+||..-++-
T Consensus       116 Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSRV  129 (1267)
T ss_pred             cccCCCHHHHHhhc
Confidence            99999999887773

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.4e-08  Score=90.60  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             HHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCc-cceecCCCCCchhHHHHhc-HHHHHH
Q 022200           60 AASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN-LVRVQGREGVTPLHYVAEN-VDLLYK  137 (301)
Q Consensus        60 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~-~~~~~~  137 (301)
                      |+..++.--++..-..|+++ -.++.+..|.||+|+..|+-++|+++|++++. .++..|..|.|+||-|+.. +..+..
T Consensus       873 av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~  951 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQ  951 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHH
Confidence            44444433333444444443 34455555555555555555555555555532 2444455556666655555 555555


Q ss_pred             HHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200          138 FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus       138 lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      +|.+.|+.+...|..|.||-..|-+.|.++...+|-
T Consensus       952 ~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  952 LLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            555566655555666666666666666666555553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2e-08  Score=89.61  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=97.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCC-chhhhcCCCCCcHHHHHHHCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP-SFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      .+..|+..+++-.+...-..|.+...+..   +..+.||+|++.|+-++|+|||++++ ++++..|..|.|+||.|+..+
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~---~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGP---DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCc---chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            47888888887666666666776654433   47899999999999999999999976 456777889999999999999


Q ss_pred             CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHh
Q 022200           99 HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTA  141 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~  141 (301)
                      +..+.++|++.|+. +...|..|.||-.-|-+. ..++..+|..
T Consensus       946 ~r~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             chHHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999999999999 888999999999888777 6777777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.75  E-value=1.2e-08  Score=55.81  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=15.1

Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCc
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRN  112 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~  112 (301)
                      |+||||+||..|+.+++++|++.|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            55555555555555555555555554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=3.7e-08  Score=86.61  Aligned_cols=87  Identities=23%  Similarity=0.278  Sum_probs=79.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ..||..++.|+.+..-.||..|++.+....+  .|.||||.|++.|+..-+++|+-+|+++ ...|.+|.||+.+|-..|
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpe--kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPE--KGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcc--cCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcC
Confidence            3699999999999999999999998877655  4999999999999999999999999988 888999999999999999


Q ss_pred             CHHHHHHHhh
Q 022200           99 HTQMVLRLID  108 (301)
Q Consensus        99 ~~~~v~~Ll~  108 (301)
                      |.++.+.|++
T Consensus       212 H~~laeRl~e  221 (669)
T KOG0818|consen  212 HHELAERLVE  221 (669)
T ss_pred             chHHHHHHHH
Confidence            9998887776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.70  E-value=2.2e-08  Score=56.30  Aligned_cols=31  Identities=29%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG  118 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d  118 (301)
                      |.||||+|+..|+.+++++|++.|++ ++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD-INARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence            56666666666666666666666665 55444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=1.8e-08  Score=88.13  Aligned_cols=89  Identities=18%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      +..++++|++.|+...++.+.=.+.+. +.+|.+.+|+||.|+..|+.+++++|++....+++.+|..|+|||.-|... 
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            456677777777777777776666555 666777777777777777777777777765555777777777777777666 


Q ss_pred             HHHHHHHHHhC
Q 022200          132 VDLLYKFLTAC  142 (301)
Q Consensus       132 ~~~~~~lL~~~  142 (301)
                      +.+++++|.+.
T Consensus       585 h~~v~k~L~~~  595 (622)
T KOG0506|consen  585 HKEVVKLLEEA  595 (622)
T ss_pred             cHHHHHHHHHH
Confidence            66666666654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.68  E-value=1.8e-08  Score=88.07  Aligned_cols=90  Identities=23%  Similarity=0.231  Sum_probs=80.0

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      -.++++|++.|++..++.+.-.|.|....+-   +.+|+||.||..|+.+++++|++.-...++.+|..|+|||.-|...
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy---D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDY---DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhccccccccc---ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3479999999999999999999998765543   4899999999999999999999986666688999999999999999


Q ss_pred             CCHHHHHHHhhcC
Q 022200           98 SHTQMVLRLIDVD  110 (301)
Q Consensus        98 ~~~~~v~~Ll~~~  110 (301)
                      +|.+++++|-+.-
T Consensus       584 ~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQ  596 (622)
T ss_pred             CcHHHHHHHHHHh
Confidence            9999999987753

>PF13606 Ank_3: Ankyrin repeat

Probab=98.66  E-value=3e-08  Score=54.19  Aligned_cols=29  Identities=28%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccc
Q 022200          152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN  186 (301)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  186 (301)
                      +|+||||+|++.|+.+++++|+++      |+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~------gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH------GADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc------CCCCC
Confidence            589999999999999999999996      88876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=4.4e-08  Score=55.03  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccC
Q 022200          152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD  190 (301)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~  190 (301)
                      +|.||||+|+..|+.+++++|+++      |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~------ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH------GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT------TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC------cCCCCCCCC
Confidence            589999999999999999999996      999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.57  E-value=2.2e-07  Score=83.26  Aligned_cols=93  Identities=19%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhh-hhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLI-DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      ..|..|+...|+..+..||.+|.... +......+|+|+||+||..|+..+.++|+=++.++ ..+|..|+|+|.||-..
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhc
Confidence            36888888888888888888875432 12222235788888888888888888888666655 77788888888888888


Q ss_pred             CCHHHHHHHhhcCCc
Q 022200           98 SHTQMVLRLIDVDRN  112 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~  112 (301)
                      |..+++..|+++|..
T Consensus       705 ~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCP  719 (749)
T ss_pred             ccHHHHHHHHHcCCC
Confidence            888888888888754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.56  E-value=2.6e-07  Score=81.42  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=80.8

Q ss_pred             hcCCCCCc------HHHHHHHCCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC
Q 022200           82 KQNQYGCS------PLHLALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK  153 (301)
Q Consensus        82 ~~~~~g~t------pLh~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g  153 (301)
                      .+|.+|.+      -||-.++.|+.+..-.||..|++ +|..+ ..|.||||.|++. ...-+++|.-+|+|+...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            35556655      48999999999999999999999 77666 5799999999999 7778889999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh
Q 022200          154 ETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       154 ~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      .||+.+|=..||-++.+-|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999888888774

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=2e-07  Score=82.89  Aligned_cols=84  Identities=21%  Similarity=0.330  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCHHHHHHH-HHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--H
Q 022200           56 HLHIAASMGHVNFALEI-MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--V  132 (301)
Q Consensus        56 ~Lh~A~~~g~~~~v~~L-l~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~  132 (301)
                      |+|+++.....+-+... ...-...++.+|..|.||||+|+..|+.+.++.|+..+++ +..+|.+|++|||.|+..  .
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCCH
Confidence            48888877666554443 3333445577788888888888888888888888888888 888888888888888887  3


Q ss_pred             HHHHHHHH
Q 022200          133 DLLYKFLT  140 (301)
Q Consensus       133 ~~~~~lL~  140 (301)
                      ..+..+|.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            34444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=2.9e-07  Score=81.92  Aligned_cols=89  Identities=27%  Similarity=0.366  Sum_probs=72.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      .|||.++...+.+.....+.... ...+..+  ..|.||||+|+..|+.+.++.|+..++++ ..++..|++|||.|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D--~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRD--PPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecccc--CCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHc
Confidence            35999999999888877654432 2223323  25899999999999999999999999877 78899999999999999


Q ss_pred             CCHHHHHHHhhcC
Q 022200           98 SHTQMVLRLIDVD  110 (301)
Q Consensus        98 ~~~~~v~~Ll~~~  110 (301)
                      |+.+++..+|.+-
T Consensus        99 g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   99 GNEQIITEVLRHL  111 (560)
T ss_pred             CCHHHHHHHHHHh
Confidence            9998888777643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=1.7e-06  Score=77.67  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=66.4

Q ss_pred             HHHHHHHCCCHHHHHHHhhcCCcc---ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           90 PLHLALQNSHTQMVLRLIDVDRNL---VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        90 pLh~A~~~~~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      -|.-|+...+...+-+||.+|...   -...+.+|+|+||+|+.. +-.+..+|+-+|+|+..+|..|+|+|.||=..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            356677777777777888776431   222345678888888888 7778888888888888888888888888888888


Q ss_pred             HHHHHHHHHh
Q 022200          166 LKVLKVMLGW  175 (301)
Q Consensus       166 ~~~~~~Ll~~  175 (301)
                      .+++..|+++
T Consensus       707 qec~d~llq~  716 (749)
T KOG0705|consen  707 QECIDVLLQY  716 (749)
T ss_pred             HHHHHHHHHc
Confidence            8888888887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.14  E-value=1.2e-05  Score=75.82  Aligned_cols=126  Identities=16%  Similarity=0.077  Sum_probs=73.7

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhh-hhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYL-IDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ..++-....|+..|+...|+..++..... .+..-.++-|+++|++|+.+.+.+++++|+++.-..        .-+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            34455677788888888888887764430 111111224788888888888888888888765332        235777


Q ss_pred             HHHCCCHHHHHHHhhcCCccc---------eecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhc
Q 022200           94 ALQNSHTQMVLRLIDVDRNLV---------RVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQ  148 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~  148 (301)
                      |+..|..++|+.++.+.....         ...-..+.|||.+||.. +-+|+++|+..|+++..
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            888888888888887543310         00111234455555444 44444555544444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=1.3e-05  Score=68.83  Aligned_cols=55  Identities=24%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP   77 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~   77 (301)
                      .|..||+.|+++.|++|++.|.+++..+.   +..+||.+|+..||.++|+.||++|+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~---fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDR---FDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhc---ccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            45555555555555555555544433322   24455555555555555555555543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.06  E-value=3.7e-06  Score=80.87  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             CCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHH
Q 022200          120 EGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI  198 (301)
Q Consensus       120 ~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~  198 (301)
                      .|.|+||.|+.. ...+.++|++.|++++..|..|+||||.+...|+...+..|++.      +++.+..|.+|.+||++
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~------~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR------GADPNAFDPDGKLPLDI  728 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc------cccccccCccCcchhhH
Confidence            467777777777 66777777777777777777777777777777777777777763      77777777777777777


Q ss_pred             HHHH
Q 022200          199 SISR  202 (301)
Q Consensus       199 A~~~  202 (301)
                      |...
T Consensus       729 a~~~  732 (785)
T KOG0521|consen  729 AMEA  732 (785)
T ss_pred             Hhhh
Confidence            7555

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=2.1e-05  Score=74.18  Aligned_cols=113  Identities=18%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCc---hhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           55 THLHIAASMGHVNFALEIMRLKPS---FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      --...|+..|+...|+..++....   ..+..|.-|+++|+.|+.+.+.+++++|++++.. .  .|  +   |.+|+..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-~--gd--A---LL~aI~~   98 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-E--GD--A---LLLAIAV   98 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-c--ch--H---HHHHHHH
Confidence            344556677777777666665322   3355666677777777777777777777766543 1  22  2   4444444


Q ss_pred             -HHHHHHHHHhCCcchh----------ccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          132 -VDLLYKFLTACPKSIL----------QVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~----------~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                       .-.++++++.+.....          ..-.-+.|||.+||...+.||+++||..
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence             4555555555443321          1112356777777777777777777764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.98  E-value=8e-06  Score=78.49  Aligned_cols=121  Identities=18%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |++.+|+++..++.-.++.+++.........|.+|.-.+|+ |..++.+..-+|.......++++|..|+||||+|+.. 
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            66667777666666666666664111123345555555555 3344444444444433222666677777777777666 


Q ss_pred             HHHHHHHHHhCCcch------hccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200          132 VDLLYKFLTACPKSI------LQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~------~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      .+.++.-|.+.|++.      ......|.|+-..|-..|+..+..+|-+
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            556666555544432      2223446666666666666666655544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.98  E-value=5.8e-06  Score=79.53  Aligned_cols=63  Identities=19%  Similarity=0.148  Sum_probs=39.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200          152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSL  219 (301)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~  219 (301)
                      .|.|+||.|+..|...+.++||+.      |+++|..|..|+||||.+...       .|++.     ..+.+|.+|+++
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~------ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN------GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc------CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhH
Confidence            356666666666666666666664      666666666666666666655       33333     556666666666


Q ss_pred             h
Q 022200          220 A  220 (301)
Q Consensus       220 a  220 (301)
                      |
T Consensus       729 a  729 (785)
T KOG0521|consen  729 A  729 (785)
T ss_pred             H
Confidence            6

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.98  E-value=7.3e-06  Score=78.77  Aligned_cols=121  Identities=14%  Similarity=0.038  Sum_probs=97.3

Q ss_pred             hhcCCCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHH
Q 022200           81 RKQNQYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALY  158 (301)
Q Consensus        81 ~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh  158 (301)
                      ......|.+.+|+++..+..-+++.+++- +.. ....|..|.-.+|+++.. .+..+.+..-.|..++.+|..|+||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            44567899999999999999999999996 555 667788888899997776 555556666788899999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          159 VAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       159 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|+..|+..++..|.+..+...--.++...+..|.|+-.+|..+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence            99999999999999986444333334445567789988888766

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.77  E-value=4.8e-05  Score=59.36  Aligned_cols=61  Identities=21%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN  112 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~  112 (301)
                      +|+|+|++|+..|+.+.+.+|+.++...+...|..|.+++.+|-..|..++++.|-+...+
T Consensus        11 fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            6889999998888888888998888666688888888888888888888888888876544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.62  E-value=0.00015  Score=56.65  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             hhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhC
Q 022200           79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTAC  142 (301)
Q Consensus        79 ~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~  142 (301)
                      .++.+|..|+||++.|+..|+.+.+.+|+.+|+..+...|..|.+++.+|-.. ...+++.|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34788999999999999999999999999999544889999999999998888 66677766654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.59  E-value=0.00015  Score=62.50  Aligned_cols=84  Identities=23%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhcHHH
Q 022200           55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL  134 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~  134 (301)
                      --|..||+.|+.+.|++|++.|.++ |..|....+||.+|+..||..++++||+.|+- ...-..+|.-. |+++.+ ..
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC-~YgaLn-d~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRC-HYGALN-DR  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchh-hhhhhh-HH
Confidence            3578999999999999999988776 88899999999999999999999999999986 33333455544 444443 33


Q ss_pred             HHHHHHhC
Q 022200          135 LYKFLTAC  142 (301)
Q Consensus       135 ~~~lL~~~  142 (301)
                      +.++|+++
T Consensus       114 IR~mllsy  121 (516)
T KOG0511|consen  114 IRRMLLSY  121 (516)
T ss_pred             HHHHHHHH
Confidence            44444443

>smart00248 ANK ankyrin repeats

Probab=96.92  E-value=0.0016  Score=33.92  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=11.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhC
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLK   76 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~   76 (301)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.0029  Score=32.83  Aligned_cols=26  Identities=38%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCc
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRN  112 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~  112 (301)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            67888888888888888888887765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.53  E-value=0.003  Score=56.51  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhCCch-----hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           66 VNFALEIMRLKPSF-----ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        66 ~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .+.+++|.+++...     +...+..-.|+||+|+..|..++|.+||+.|++ +..+|..|+||..++.-.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccccH
Confidence            55666776664332     122344567899999999999999999999988 889999999999888743

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.49  E-value=0.0034  Score=56.20  Aligned_cols=64  Identities=20%  Similarity=0.005  Sum_probs=52.2

Q ss_pred             HHHHHHHHhCCcchh------ccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          133 DLLYKFLTACPKSIL------QVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       133 ~~~~~lL~~~~~~~~------~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +..++.|.+++.+.|      ..+....|+||+|+..|..+++.+||+.      |+|+..+|..|.||..++.-.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee------g~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE------GCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh------cCCchhcccCCCCcccccccH
Confidence            455666666666553      3345578999999999999999999996      899999999999999998755

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.97  E-value=0.52  Score=38.43  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          149 VTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +-+.|.|.|.-|+++++.+++.+||++
T Consensus       250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~  276 (284)
T PF06128_consen  250 KVNSGDTMLDNAMKYKNSEMIAFLLKY  276 (284)
T ss_pred             ccCCcchHHHhHHhcCcHHHHHHHHHc
Confidence            345577777777777777777777776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.12  E-value=0.3  Score=32.81  Aligned_cols=47  Identities=15%  Similarity=0.079  Sum_probs=26.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL   75 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   75 (301)
                      ..|..|+..|+.|+++.+++.+..          -...+..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            455666666666666666543311          12346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.04  E-value=1.5  Score=34.64  Aligned_cols=132  Identities=12%  Similarity=0.024  Sum_probs=79.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSH   99 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~   99 (301)
                      .|..|++.+.+.++++.-+...+.   .   ...++.+-.||+..+.++|+++-..-.      -.+-.+-+..|....+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~---~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---R---YLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---h---hHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhccc
Confidence            467788888888887765543321   0   125678889999999999999843311      1122345667887777


Q ss_pred             HHHHH----HHhhcCCccceecCCCCC-----chhHHHHhc--HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHH
Q 022200          100 TQMVL----RLIDVDRNLVRVQGREGV-----TPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV  168 (301)
Q Consensus       100 ~~~v~----~Ll~~~~~~~~~~d~~g~-----tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  168 (301)
                      .++..    ++.++...    .+....     .-|..|+..  ..-+.+.|. +|.+++.      ++|..|+.+.+.++
T Consensus       117 lsLyslGY~l~~~~~~~----~~~~d~~~ll~~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkI  185 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMS----EHNEDPTSLLTQHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKI  185 (192)
T ss_pred             hhHHHHHHHHHHhhccc----ccccCHHHHHHHHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHH
Confidence            77633    22222211    111111     124455555  555555544 4554432      78999999999999


Q ss_pred             HHHHHH
Q 022200          169 LKVMLG  174 (301)
Q Consensus       169 ~~~Ll~  174 (301)
                      +.+++.
T Consensus       186 L~yfi~  191 (192)
T PF03158_consen  186 LDYFIR  191 (192)
T ss_pred             HHHhhc
Confidence            988864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.29  E-value=0.94  Score=37.02  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhC----CchhhhcCCCCCcHHHHH
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK----PSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~----~~~~~~~~~~g~tpLh~A   94 (301)
                      -.|-.|+..-+.+.+..++..-.+          -.+++.+|+..+..+++-+|++.-    .++..  -..+..-+-|+
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd----------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~--~~~~~ydieY~  222 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD----------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVAS--MEKELYDIEYL  222 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH----------HHHHHHHHhcccHHHHHHHHHhhcceecchhhh--cCcchhhHHHH
Confidence            357888888888888777654332          357888888888899999999872    22221  12244456666


Q ss_pred             HHC--CCHHHHHHHhhcCCccce---ecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           95 LQN--SHTQMVLRLIDVDRNLVR---VQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        95 ~~~--~~~~~v~~Ll~~~~~~~~---~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      ...  .+..++++++++|-..++   .+-+.|.|-|.-|..+ ..++..+|+++|+.
T Consensus       223 LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  223 LSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            553  467889999998844344   3457899999999999 88888999999884

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.78  E-value=0.43  Score=32.08  Aligned_cols=49  Identities=14%  Similarity=0.108  Sum_probs=40.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcC
Q 022200           54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD  110 (301)
Q Consensus        54 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~  110 (301)
                      ...+..|+..|+.|+++.+++.+...        ...+..|+...+.+++++|++.-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            35679999999999999999776322        23599999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           T LH+AA  GH    LE+++L     +    +++ G +PLHLA +N H ++V  L++   
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 112 NLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170
           + V  + + G TPLH  A N  L + K L      +        T L++AA+N  L+V+K
Sbjct: 60  D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 171 VML 173
           ++L
Sbjct: 119 LLL 121

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 15  SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
           S   +RL EAA+ GN D + +L+    D    D   + P     LH AA  GH     EI
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTP-----LHYAAENGHK----EI 52
Query: 73  MRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 127
           ++L   K +    ++  G +PLH A +N H ++V  L+    D N     GR   TPLHY
Sbjct: 53  VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHY 109
Query: 128 VAEN 131
            AEN
Sbjct: 110 AAEN 113

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 15  SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
           S   ++L EAA+AG  D +  L+    D    D +   P     LH+AA  GH+   +E+
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTP-----LHLAAKTGHLEI-VEV 65
Query: 73  MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--- 129
           +    +     + YG +PLHLA  N H ++V  L+    + V  +  EG TPLH  A   
Sbjct: 66  LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDG 124
Query: 130 --ENVDLLYKF 138
             E V++L K+
Sbjct: 125 HLEIVEVLLKY 135

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
           T LHIAA    V  A  +++   S A  ++  G +PLHLA Q  H +MV  L+    N  
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G 271
Query: 115 RVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKE-TALYVAAKNDKLKV 168
            +  + G+TPLH VA+       D+L K        ++  T R   T L+VA+    +K+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKL 326
Query: 169 LKVML 173
           +K +L
Sbjct: 327 VKFLL 331

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
           S   ++L EAA+AG  D +  L+   A +    DQ     T LH+AA +GH    +E++ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEI-VEVLL 67
Query: 75  LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
              +    ++  G +PLHLA  N H ++V  L+    + V  Q   G+TPLH  A+
Sbjct: 68  KHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAAD 122

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19  QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
           ++L EAA+AG  D +  L+   A  ++  D+  +  T LH+AA  GH+   +E++    +
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 71
Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
               +++ G +PLHLA +  H ++V  L+    + V  + ++G TPLH  A
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19  QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
           ++L EAA+AG  D +  L+   A  ++  D+  +  T LH+AA  GH+   +E++    +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 59
Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
               +++ G +PLHLA +  H ++V  L+    + V  + ++G TPLH  A
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 55  THLHIAASMGHVNFALEIMRL--KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
           T LH A   GH++  +++M+    PS    +   GCS +HLA Q  HT +V  LI   ++
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 113 LVRVQGREGVTPLHYVA---ENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169
            V +  + G+TPL + A    +VD     LT      L     K TAL+ A       V+
Sbjct: 135 -VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 170 KVML 173
            ++L
Sbjct: 194 SLLL 197

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
           S   ++L EAA+AG  D +  LI   A  ++ +D      T LH+AA  GH+   +E++ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGAD-VNAVDNTGL--TPLHLAAVSGHLEI-VEVLL 67
Query: 75  LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA----- 129
              +     + YG +PLHLA    H ++V  L+    + V      G TPLH  A     
Sbjct: 68  KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHL 126
Query: 130 ENVDLLYKF 138
           E V++L K+
Sbjct: 127 EIVEVLLKY 135

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19  QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
           ++L EAA+AG  D +  L+   A  ++  D+  +  T LH+AA  GH+   +E++    +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 59
Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
               +++ G +PLHLA +  H ++V  L+    + V  + ++G TPLH  A
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKS 145
           G +PLHLA +N H ++V  L++   + V  + + G TPLH  A N  L + K L      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVML 173
           +        T L++AA+N  L+V+K++L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 19  QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
           ++L EAA+AG  D +  L+   A   D   +  + DT LH+AA +GH+   +E++    +
Sbjct: 16  KKLLEAARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEI-VEVLLKNGA 71
Query: 79  FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-----ENVD 133
                +  G +PLHLA +  H ++V  L+    + V      G TPLH  A     E V+
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIVE 130
Query: 134 LLYKF 138
           +L K+
Sbjct: 131 VLLKY 135

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
           S   ++L EAA+AG  D +  L+   A  ++  D V +  T LH+AA  GH+   +E++ 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGAD-VNAADVVGW--TPLHLAAYWGHLEI-VEVLL 67
Query: 75  LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVA--- 129
              +     +  G +PLHLA    H ++V  L+   +N   V  ++  G+TPLH  A   
Sbjct: 68  KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANRG 124
Query: 130 --ENVDLLYKF 138
             E V++L K+
Sbjct: 125 HLEIVEVLLKY 135

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACPKS 145
           G +PLH A +N H ++V  LI    + V  +  +G TPLH+ AEN    + K L +    
Sbjct: 37  GRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
           +        T L+ AA+N   +V+K+++     VN  D   R
Sbjct: 96  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
           S   ++L EAA+AG  D +  L+   A  ++  D V +  T LH+AA  GH+   +E++ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGAD-VNASDHVGW--TPLHLAAYFGHLEI-VEVLL 67
Query: 75  LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
              +     +  G +PLHLA    H ++V  L+    + V      G TPLH  A
Sbjct: 68  KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAA 121

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD-THLHIAASMGHVNFALEIM 73
           S   ++L EAA+AG  D +  L+   A     ++   F   T LH+AA  GH+   +E++
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGA----DVNARDFTGWTPLHLAAHFGHLEI-VEVL 66
Query: 74  RLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
               +    ++  G +PLHLA +  H ++V  L+    + V      G TPLH  A+
Sbjct: 67  LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAK 122

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 86  YGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-----ENVDLLYKFLT 140
           +G +PLHL + N H +++  L+    + V    + G TPLH  A     E V++L K+  
Sbjct: 46  FGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
                +  +  +  T L++AA++  L++++V+L +   VN  D   +
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 19  QRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK 76
           ++L EAA+AG  D +  L+    DA   D   + P     LH+AA++GH+   +E++   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGADANAYDHYGRTP-----LHMAAAVGHLEI-VEVLLRN 57
Query: 77  PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
            +     +  G +PLHLA    H ++V  L+    + V  +   G+TPL+  A
Sbjct: 58  GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAA 109

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 15  SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
           S   ++L EAA+AG  D +  L+   A  ++  D   +  T LH+AAS GH+   +E++ 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGAD-VNATDNDGY--TPLHLAASNGHLEI-VEVLL 67
Query: 75  LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
              +     +  G +PLHLA    H ++V  L+    + V     +G TPLH  A+
Sbjct: 68  KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAK 122

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 87  GCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACP 143
           G +PLHLA +N H ++V  L+    D N    +  +G TPLH  AEN    + K L +  
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 144 KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
                     +T L++AA+N   +V+K++L      N  D   R
Sbjct: 94  ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGR 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
2etb_A	256	Transient receptor potential cation channel subfam	5e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	7e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-05

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPS---FARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           D+ LH+A         +E++R       F   QN    +PLHLA+  +  ++   L+   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLL--YKFLTACPKSILQVTIRKETALYVAAKN 163
            +   ++   G TPLH   E      V +L            +        T L++A+ +
Sbjct: 69  CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 164 DKLKVLKVML 173
             L ++++++
Sbjct: 128 GYLGIVELLV 137

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 63/218 (28%)

Query: 24  AAQAGNVDALYELIWEDAYLIDQIDQVPFVD----THLHIAASMGHVNFALEIMRL---- 75
           A          E+I     +   +  + F +    T LH+A          EI       
Sbjct: 15  AIIHEEKALTMEVI---RQVKGDLAFLNFQNNLQQTPLHLAVITNQ----PEIAEALLGA 67

Query: 76  --KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG-----REGVTPLHYV 128
              P     ++  G +PLHLA +      V  L                   G T LH  
Sbjct: 68  GCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 129 AEN-----VDLLYKFLTACPKSILQVTIRK------------ETALYVAAKNDKLKVLKV 171
           + +     V+LL               +               TAL++A       ++ +
Sbjct: 125 SIHGYLGIVELL---------------VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 172 MLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +L           +NR   +G     ++  R      +
Sbjct: 170 LL------KCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 20/155 (12%)

Query: 54  DTHLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
           +T LH+A   G     L  + +           S  +  N  G + LHLA  + +  +V 
Sbjct: 79  NTPLHLACEQGC----LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKN 163
            L+ +  ++   +   G T LH   +  +  L   L  C   + +VT +  +   +    
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
              ++ + +              +   E       
Sbjct: 195 PSTRIQQQLG------QLTLENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 8e-09
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 34/136 (25%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLI--------DVDRNLVRVQGREGVTPLHYVAEN-- 131
           +  + G S LHLA+ +    + + +I         ++      Q     TPLH       
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----FQNNLQQTPLHLAVITNQ 57

Query: 132 ---VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKD 182
               + L          +           R  T L++A +   L  + V+       +  
Sbjct: 58  PEIAEAL----------LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 183 DIINRKDDEGSILLHI 198
            I+   +  G   LH+
Sbjct: 108 SILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 28/128 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGCSPLHLALQNSHTQMVLR 105
           T LH+A+  G+    L I+ L               ++   G + LHLA+   +  +V  
Sbjct: 119 TCLHLASIHGY----LGIVELLVSLGADVNA-----QEPCNGRTALHLAVDLQNPDLVSL 169

Query: 106 LIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVA 160
           L+    + V     +G +P               L + LT      LQ+    E      
Sbjct: 170 LLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTL---ENLQMLPESEDEESYD 224

Query: 161 AKNDKLKV 168
            +++  + 
Sbjct: 225 TESEFTEF 232

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 24/180 (13%)

Query: 24  AAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ 83
           A          EL  E+    D I      DT+     S G          +  ++  +Q
Sbjct: 19  ALYTFEPRTPDELYIEEG---DIIYITDMSDTNWWKGTSKGRTG------LIPSNYVAEQ 69

Query: 84  NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKF 138
            +   +PLH A +  +   +   +D     V    + G T L++         V++L   
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEML--- 125

Query: 139 LTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            T     + Q     +TAL+ AA      +++++L       K    + ++ E  +   +
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL------AKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 40/163 (24%)

Query: 54  DTHLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
           D  LH AA  G+    L  +R         +     ++ G + L+ A    H  +V  L 
Sbjct: 74  DNPLHEAAKRGN----LSWLRECLDNRVGVN---GLDKAGSTALYWACHGGHKDIVEMLF 126

Query: 108 DVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETA 156
                 +  Q + G T LH  A       V LL          + +        I K+ A
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLL----------LAKGARTDLRNIEKKLA 176

Query: 157 LYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS 199
             +A       +LK   G       D +    + E  +    S
Sbjct: 177 FDMATNAACASLLKKKQG------TDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLT 140
           K  + G   +  AL     +    L   + +++ +      T            L     
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYIT-DMSDTNWWKGTSKGRTGLIPSNY 65

Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
              +         +  L+ AAK   L  L+  L      +    +N  D  GS  L+ 
Sbjct: 66  VAEQ-----AESIDNPLHEAAKRGNLSWLRECL------DNRVGVNGLDKAGSTALYW 112

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L  A   G+ D +  L  +    ++Q ++    DT LH AA  G+     +I++L     
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNK--LGDTALHAAAWKGY----ADIVQLLLAKG 163

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
            +      +N        +A   +   ++ +    D     +   E           
Sbjct: 164 ARTD---LRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDSDLE 216

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.1 bits (160), Expect = 5e-13
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           +++ A  G +D L E + +   L+++ D+     T L  A++ G     +E +R      
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGE----IETVRFLLEWG 59

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
             P       +   S L LA    +T +V  L++ D + + +    G TPL Y       
Sbjct: 60  ADPH---ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHV 115

Query: 132 --VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKD 189
             V    + L A    +        T + +A      KV +V+       N    + + +
Sbjct: 116 KCV----EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE------NHILKLFQSN 165

Query: 190 DEG 192
              
Sbjct: 166 LVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 58.6 bits (143), Expect = 8e-11
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             +H  A+ G ++   E +R   +   K ++ G +PL  A      + V  L++   +  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-P 62

Query: 115 RVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRK-----------ETALY 158
            +  +E  + L   +       V LL               + +            T L 
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLL---------------LERDVDINIYDWNGGTPLL 107

Query: 159 VAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            A + + +K ++ +L       +   +  + D G   + +
Sbjct: 108 YAVRGNHVKCVEALL------ARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 8e-08
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 29/124 (23%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
               +H          +   +    NLV      G TPL + +       V  L      
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL------ 55

Query: 142 CPKSILQV-------TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSI 194
                L+           +E+AL +A+      ++ ++L       +D  IN  D  G  
Sbjct: 56  -----LEWGADPHILAKERESALSLASTGGYTDIVGLLL------ERDVDINIYDWNGGT 104

Query: 195 LLHI 198
            L  
Sbjct: 105 PLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL---KP 77
           L+ A+  G  D +  L+  D   I+  D      T L  A    H    ++ +     + 
Sbjct: 73  LSLASTGGYTDIVGLLLERDVD-INIYDW--NGGTPLLYAVRGNH----VKCVEALLARG 125

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTP 124
           +    +   G +P+ LA+   + ++   + +     +         P
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP 171

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 26/186 (13%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+ AA+AG+ +    L+   A  ++   +     T LH AA +GH      +++L     
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAK-VNAKAK--DDQTPLHCAARIGH----TNMVKLLLENN 103

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--V 132
             P+        G +PLH+A +  H + VL L++ + +      ++G TPLH  A+   V
Sbjct: 104 ANPN---LATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKV 159

Query: 133 DLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG 192
            +  + L               T L+VA  ++ L ++K++L       +    +     G
Sbjct: 160 RVA-ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL------PRGGSPHSPAWNG 212

Query: 193 SILLHI 198
              LHI
Sbjct: 213 YTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 20/183 (10%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL---KP 77
           L+ A    N+D +  L+                 T LHIAA        +E+ R      
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGS-PHSPAW--NGYTPLHIAAKQNQ----VEVARSLLQYG 235

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLL 135
             A  ++  G +PLHLA Q  H +MV  L+    N   +  + G+TPLH VA+   V + 
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
              L      +   T    T L+VA+    +K++K +L           +N K   G   
Sbjct: 295 -DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL------QHQADVNAKTKLGYSP 347

Query: 196 LHI 198
           LH 
Sbjct: 348 LHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 17/183 (9%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL---KP 77
           L+ AAQ G+ + +  L+ + A   +  ++     T LH+ A  GH    + +  +     
Sbjct: 249 LHLAAQEGHAEMVALLLSKQAN-GNLGNK--SGLTPLHLVAQEGH----VPVADVLIKHG 301

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLL 135
                  + G +PLH+A    + ++V  L+    + V  + + G +PLH  A+    D++
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIV 360

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
              L     S  +V+    T L +A +   + V  V+       ++   +   D      
Sbjct: 361 -TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL---KVVTDETSFVLVSDKHRMSF 416

Query: 196 LHI 198
              
Sbjct: 417 PET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           T LH+A+ MGH    L I++    + +     N    +PLH+A +  HT++   L+    
Sbjct: 16  TPLHVASFMGH----LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71

Query: 112 NLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169
             V  + ++  TPLH  A     +++ K L     +    T    T L++AA+   ++ +
Sbjct: 72  K-VNAKAKDDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETV 129

Query: 170 KVMLGWLRYVNKDDIINRKDDEGSILLHI 198
             +L       K+        +G   LH+
Sbjct: 130 LALL------EKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL---KP 77
           L+ AA+   V+    L+       +         T LH+AA  GH     E++ L   K 
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGS-ANAESV--QGVTPLHLAAQEGH----AEMVALLLSKQ 268

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLL 135
           +     N+ G +PLHL  Q  H  +   LI      V    R G TPLH  +    + L+
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLV 327

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
            KFL      +   T    + L+ AA+     ++ ++L      N     N    +G+  
Sbjct: 328 -KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-----NGASP-NEVSSDGTTP 380

Query: 196 LHISISRKLESTVR 209
           L I+      S   
Sbjct: 381 LAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFL 139
              + G +PLH+A    H  +V  L+    +   V   +  TPLH  A     ++  K+L
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVA-KYL 66

Query: 140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                 +       +T L+ AA+     ++K++L        +   N     G   LHI
Sbjct: 67  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL------ENNANPNLATTAGHTPLHI 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV--DRN 112
             LH A          E++  KPS   +++Q G  PLH ++     ++   L+    + N
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 113 LVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKS-ILQVTIRKETALYVAAKNDKL 166
           L       G TP H          V  L        K  + ++T +  T L++A      
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSL---YDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           +V + ++           +  KD    I LH 
Sbjct: 121 EVSQFLI------ENGASVRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFA--RKQNQYGCSPLHLALQNSHTQMVLRLIDV 109
           T  HIA S+G+    LE+++    +P      K    G + LHLA+     ++   LI+ 
Sbjct: 74  TPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 110 DRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKND 164
             + VR++ +    PLH  A       ++LL         ++     +  T L+ A    
Sbjct: 130 GAS-VRIKDKFNQIPLHRAASVGSLKLIELL---CGLGKSAVNWQDKQGWTPLFHALAEG 185

Query: 165 KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                 +++            +  D++G+    +
Sbjct: 186 HGDAAVLLVE-----KYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH+A          E+ +            R ++++   PLH A      +++  L  
Sbjct: 109 TCLHLAVGKKW----FEVSQFLIENGASV---RIKDKFNQIPLHRAASVGSLKLIELLCG 161

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKN 163
           + ++ V  Q ++G TPL +           LL +   A       V  +   A  VA   
Sbjct: 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA---EYDLVDNKGAKAEDVALNE 218

Query: 164 DKLKVL 169
              K  
Sbjct: 219 QVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
              PLH A   +    V  L+    +L+  + ++G  PLH+            L      
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-ME 60

Query: 142 CPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                        T  ++A     L+V+K +       +    +N+  ++G   LH+
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD----LNKITNQGVTCLHL 113

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 21/203 (10%), Positives = 59/203 (29%), Gaps = 40/203 (19%)

Query: 21  LNEAAQAGNVDALYELIWEDAYL----IDQIDQVPFVDTHLHIAASMGHVNFALEIMRL- 75
           L  A +  N +AL  ++          +D  ++    ++HLH A  +       ++    
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANK--QGNSHLHWAILINW----EDVAMRF 230

Query: 76  -----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR----------- 119
                  +    ++     PL+L+++ +   +   L+      +                
Sbjct: 231 VEMGIDVN---MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 120 -EGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWL 176
              +  +   A+    ++L + L      +++             K     V ++ L   
Sbjct: 288 VVWLDFVPAAADPSKQEVL-QLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL--- 343

Query: 177 RYVNKDDIINRKDDEGSILLHIS 199
                   +  +    +    +S
Sbjct: 344 ---APSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 24/189 (12%), Positives = 62/189 (32%), Gaps = 37/189 (19%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           ++ A  A   D +         L++   +         +           E+  +    +
Sbjct: 88  IHLAVMANKTDLV-------VALVEGAKER--GQMPESLLNECDE----REVNEIG---S 131

Query: 81  RKQNQYGCSPLHLALQ--NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VD 133
             ++  G + LH  +     + +M+  L+ +  +    + +   TPL    E      +D
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALD 190

Query: 134 LLYKFLTACPKS----ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKD 189
           L+   +   P      +     +  + L+ A   +   V    +           +N +D
Sbjct: 191 LM---MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV------EMGIDVNMED 241

Query: 190 DEGSILLHI 198
           +E ++ L++
Sbjct: 242 NEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 43/155 (27%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
             +H+AA  G      + +R        P+    QN++GC+ LHLA +         L  
Sbjct: 22  EKIHVAARKGQ----TDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKN 163
           V           G  P+H          V  L          +     R +    +  + 
Sbjct: 75  VGEV---HSLWHGQKPIHLAVMANKTDLVVAL----------VEGAKERGQMPESLLNEC 121

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           D+ +V ++              + K  +G   LH 
Sbjct: 122 DEREVNEIG------------SHVKHCKGQTALHW 144

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 18/172 (10%), Positives = 50/172 (29%), Gaps = 43/172 (25%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH    +G     LE++++       P+    +++   +PL  A++  + + +  ++D
Sbjct: 140 TALHWCVGLGPEY--LEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREALDLMMD 194

Query: 109 VDRNL----VRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRK 153
              +     +    ++G + LH+                       +             
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF----------VEMGIDVNMEDNEH 244

Query: 154 ETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-------INRKDDEGSILLHI 198
              LY++ +   + + K +L                  +          +  
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 42/131 (32%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
           K +      +H+A +   T  V RLI+   +   +Q R G T LH   +         L 
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYL- 72

Query: 137 KFLTACPKSILQVTIRK---------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
                                     +  +++A   +K  ++              ++  
Sbjct: 73  --------------ASVGEVHSLWHGQKPIHLAVMANKTDLVVA------------LVEG 106

Query: 188 KDDEGSILLHI 198
             + G +   +
Sbjct: 107 AKERGQMPESL 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 9e-11
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 28/155 (18%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           + LH AA  GH    ++I  +              ++   +PL  A +N+H + V  LI 
Sbjct: 13  SPLHAAAEAGH----VDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKN 163
                V  +  EG T LH  A+      V  L   L+     +        T +  A + 
Sbjct: 66  AGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYL---LSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
             + ++K++L      +K   IN +D+E +I LH 
Sbjct: 122 KHVDLVKLLL------SKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 1e-10
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 36/159 (22%)

Query: 55  THLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           T LH+AA  GH     E+++            Q+  G +P+  A +  H  +V  L+   
Sbjct: 79  TCLHLAAKKGH----YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYV 159
            + + ++  E    LH+ A +      ++L          +        V I  ++ L++
Sbjct: 135 SD-INIRDNEENICLHWAAFSGCVDIAEIL----------LAAKCDLHAVNIHGDSPLHI 183

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           AA+ ++   + + L      ++D  +  K+ EG   L  
Sbjct: 184 AARENRYDCVVLFL------SRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 40/161 (24%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T L  AA   H    LE ++              ++  G + LHLA +  H ++V  L+ 
Sbjct: 46  TPLMEAAENNH----LEAVKYLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETAL 157
             +  V  Q   G TP+ +  E      V LL          + +          +   L
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL----------LSKGSDINIRDNEENICL 148

Query: 158 YVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           + AA +  + + +++L           ++  +  G   LHI
Sbjct: 149 HWAAFSGCVDIAEILL------AAKCDLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 37/171 (21%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+ AA+ G+ + +  L+      ++  D      T +  A    H    +++++L     
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQMDVNCQDD--GGWTPMIWATEYKH----VDLVKLLLSKG 134

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
              +    ++      LH A  +    +   L+    + +      G +PLH  A     
Sbjct: 135 SDIN---IRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRY 190

Query: 132 --VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLG 174
             V L           + +           ET L  A+ N ++     M  
Sbjct: 191 DCVVLF----------LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 27/128 (21%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
            ++Q   SPLH A +  H  +   L+    N +     +  TPL   AEN     V  L 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYL- 63

Query: 137 KFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
                    I              T L++AAK    +V++ +L      N    +N +DD
Sbjct: 64  ---------IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-----NGQMDVNCQDD 109

Query: 191 EGSILLHI 198
            G   +  
Sbjct: 110 GGWTPMIW 117

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF- 79
           +    + GN  A+   +      ++Q D   F  + LH A   G       ++ +     
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGR----SAVVEMLIMRG 62

Query: 80  AR--KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----V 132
           AR    N+   +PLHLA  + H  +V +L+    + +      G  PLHY          
Sbjct: 63  ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVA 121

Query: 133 DLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
               + L A    +       E  +  A    +  + +   
Sbjct: 122 ----EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 28/155 (18%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             +      G+       +    +   + + +G SPLH A +   + +V  LI      +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-I 65

Query: 115 RVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKN 163
            V  R   TPLH  A +     V  L          +        V       L+ A   
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKL----------LQYKADINAVNEHGNVPLHYACFW 115

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            + +V + ++          +++  +  G + +  
Sbjct: 116 GQDQVAEDLV------ANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 27/123 (21%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
               +    +  +   V   +D   N +      G +PLH+         V++L      
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML------ 58

Query: 142 CPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
               I++      +    +T L++AA +    +++ +L       K D IN  ++ G++ 
Sbjct: 59  ----IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKAD-INAVNEHGNVP 108

Query: 196 LHI 198
           LH 
Sbjct: 109 LHY 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 45/225 (20%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L +A Q  +VD + +L+   A  ++  ++     T LH A  M       +I+ L     
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGAN-VNFQEEE-GGWTPLHNAVQMSR----EDIVELLLRHG 62

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
             P     + + G +P  LA      +++   +    + V      G T     A     
Sbjct: 63  ADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKV 118

Query: 132 --VDLLYK------FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
             +  LYK            +   ++     TAL  AA+   ++VLK++L          
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD-----EMGA 173

Query: 184 IINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYL 228
            +N  D+ G   L  ++                       I   L
Sbjct: 174 DVNACDNMGRNALIHAL-------------LSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 45/182 (24%)

Query: 55  THLHIAASMGHVNFALEIMRL-------------KPSFARKQNQYGCSPLHLALQNSHTQ 101
           T    AA  G     ++ ++                    +  + G + L  A +  H +
Sbjct: 107 TAFMEAAVYGK----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 102 MVLRLID---VDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRK----- 153
           ++  L+D    D N        G   L +   + D       +  ++I  + +       
Sbjct: 163 VLKILLDEMGADVN---ACDNMGRNALIHALLSSDD------SDVEAITHLLLDHGADVN 213

Query: 154 ------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLEST 207
                 +T L +A +   L +++ +L       +   IN  D +G   L +++  KL+  
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLL-----EQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 208 VR 209
             
Sbjct: 269 AE 270

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 21  LNEAAQAGNVDALYELI-------WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIM 73
             EAA  G V AL  L               DQ        T L  AA  GH    +E++
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH----VEVL 164

Query: 74  RLKPSFAR----KQNQYGCSPLHLALQNSHTQMVLR----LIDVDRNLVRVQGREGVTPL 125
           ++            +  G + L  AL +S    V      L+D   + V V+G  G TPL
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPL 223

Query: 126 HYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVN 180
               E      V  L +        I       +TAL +A +    K+ +++       +
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

Query: 181 KDDII 185
             D++
Sbjct: 281 CGDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 54  DTHLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV 109
           +  L  A         +++++       +   ++ + G +PLH A+Q S   +V  L+  
Sbjct: 6   NHLLIKAVQNED----VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 110 DRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLK 167
             +   ++ + G TP    A    V LL K   +    + +      TA   AA   K+K
Sbjct: 62  GAD-PVLRKKNGATPFLLAAIAGSVKLL-KLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 168 VLKVMLGWLRYVNKDD----IINRKDDEGSILLHI 198
            LK +      VN          R    G+  L  
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 29/127 (22%)

Query: 84  NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLHYVAEN-----VDLLYK 137
                  L  A+QN    +V +L++   N V  Q  E G TPLH   +      V+LL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELL-- 58

Query: 138 FLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE 191
                   +              T   +AA    +K+LK+ L      +K   +N  D  
Sbjct: 59  --------LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL------SKGADVNECDFY 104

Query: 192 GSILLHI 198
           G      
Sbjct: 105 GFTAFME 111

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 35/159 (22%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH A   GH    L ++         PS     +  GCS +HLA Q  HT +V  LI 
Sbjct: 78  TPLHWATRQGH----LSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIA 130

Query: 109 VDRNLVRVQGREGVTPLHYVAEN------VDLLYKF---LTACPKSILQVTIRKETALYV 159
             ++ V +  + G+TPL + A          LL  F   +    K        K TAL+ 
Sbjct: 131 KGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK------YHKNTALHW 183

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           A       V+ ++L           ++ ++ +G   L +
Sbjct: 184 AVLAGNTTVISLLL------EAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 34/158 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             +  A   G      E  R         R+ ++   + LH A  N+   +V   I    
Sbjct: 11  WDIVKATQYGI----YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ---VTIRKE---TALYVA 160
            + ++ G    TPLH+         V  L          +      ++      + +++A
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQL----------MKYGADPSLIDGEGCSCIHLA 116

Query: 161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           A+     ++  ++       K   ++  D  G   L  
Sbjct: 117 AQFGHTSIVAYLI------AKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 23/186 (12%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----K 76
           + +A Q G  +   EL+      + Q D+     T LH AA        +++++      
Sbjct: 13  IVKATQYGIYERCRELVEAGYD-VRQPDK--ENVTLLHWAAINNR----IDLVKYYISKG 65

Query: 77  PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDL 134
               +       +PLH A +  H  MV++L+    +   +   EG + +H  A+     +
Sbjct: 66  AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSI 124

Query: 135 LYKFLTACPKSILQVTIRKETALYVAA-KNDKLKVLKVMLGWLRYVNKDDIINRKDD-EG 192
           +  +L A  + +  +     T L  AA +   +   +++L        +  +N  D    
Sbjct: 125 V-AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL------TFNVSVNLGDKYHK 177

Query: 193 SILLHI 198
           +  LH 
Sbjct: 178 NTALHW 183

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 39/134 (29%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
             + Y    +  A Q    +    L++   + VR   +E VT LH+ A N     V    
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYY- 61

Query: 137 KFLTACPKSILQVTIRK------------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDI 184
                         I K             T L+ A +   L ++  ++           
Sbjct: 62  --------------ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM------KYGAD 101

Query: 185 INRKDDEGSILLHI 198
            +  D EG   +H+
Sbjct: 102 PSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 55  THLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           T L  AA   H   +++  RL      S       +  + LH A+   +T ++  L++  
Sbjct: 144 TPLMWAAYRTH---SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200

Query: 111 RNLVRVQGREGVTPLHYVAEN 131
            N V  Q  +G + L    + 
Sbjct: 201 AN-VDAQNIKGESALDLAKQR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI----DV 109
           ++ L +AA    V    ++++ +     ++   G + LH+A    + +  + L+    ++
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 110 DRNLVRVQGREGVTPLHYVAENVDL-LYKFL-------------TACPKSILQVTIRKET 155
               +  +  EG T LH    N ++ L + L             +        +    E 
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI 200
            L  AA     +++++++           I  +D  G+ +LHI I
Sbjct: 124 PLSFAACVGSEEIVRLLI------EHGADIRAQDSLGNTVLHILI 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 45/163 (27%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             +H  A+ G     +  +     + +     ++ G +PL  A  +    +V  L+    
Sbjct: 5   LSVHQLAAQGE----MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRK-----------ET 155
           +  ++ G+   + L           V +L               +              T
Sbjct: 61  D-PQLLGKGRESALSLACSKGYTDIVKML---------------LDCGVDVNEYDWNGGT 104

Query: 156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            L  A   + +K +K++L              + D G   + +
Sbjct: 105 PLLYAVHGNHVKCVKMLL------ESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 7e-09
 Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 52/177 (29%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD--THLHIAASMGHVNFALEIMRL--- 75
           +++ A  G +  L   I ++   I+  D+    +  T L  AA+ G     + ++     
Sbjct: 7   VHQLAAQGEMLYLATRIEQENV-INHTDE----EGFTPLMWAAAHGQ----IAVVEFLLQ 57

Query: 76  ---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131
               P       +   S L LA    +T +V  L+D   + V      G TPL Y     
Sbjct: 58  NGADPQ---LLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGN 113

Query: 132 ----VDLLYKFLTACPKSILQVTIRK-----------ETALYVAAKNDKLKVLKVML 173
               V +L               +               ++ +A       V +V+ 
Sbjct: 114 HVKCVKML---------------LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 30/124 (24%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
               +H          +   I+ +   +     EG TPL + A +     V+ L      
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFL------ 55

Query: 142 CPKSILQV-------TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSI 194
                LQ           +E+AL +A       ++K++L      +    +N  D  G  
Sbjct: 56  -----LQNGADPQLLGKGRESALSLACSKGYTDIVKMLL------DCGVDVNEYDWNGGT 104

Query: 195 LLHI 198
            L  
Sbjct: 105 PLLY 108

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 54  DTHLHIAASMGHVNFA-LEIMRLKPSFAR--KQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           DT LHIA   G++      +   +         N    +PLHLA+  +   +V  L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK 165
            +      R G T  H   E+     +  L          +        TAL+VA   + 
Sbjct: 70  AS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 166 LKVLKVMLGWLRYVNKDDIINRKDDE-GSILLHI 198
            + ++++L       +   I+  D + G   L  
Sbjct: 129 QETVQLLL------ERGADIDAVDIKSGRSPLIH 156

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 38/173 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
           T  H+A            +R               +N  G + LH+A+     + V  L+
Sbjct: 81  TAAHLACEHRS----PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136

Query: 108 DVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETA 156
           +   ++  V  + G +PL +  EN     V LL          +              +A
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL----------LQHGANVNAQMYSGSSA 186

Query: 157 LYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           L+ A+    L +++ ++            + K+      L ++ SR++   +R
Sbjct: 187 LHSASGRGLLPLVRTLV------RSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 30/135 (22%)

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL---VRVQGREGVTPLHYVAEN----- 131
           A + ++ G +PLH+A+   +   V RL+++ +     + +      TPLH          
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 132 VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVML--GWLRYVNKDD 183
           V LL          +        +    +TA ++A ++     L+ +L       ++   
Sbjct: 62  VRLL----------VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--- 108

Query: 184 IINRKDDEGSILLHI 198
            +  ++ +G   LH+
Sbjct: 109 -LEARNYDGLTALHV 122

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 28/162 (17%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF-------------ARKQNQYGCSPLHLALQNSHTQ 101
           T L IA+  G           + +                + ++ G + LHLA + S + 
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 102 MVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETA 156
              RL++   +   +Q   G TPLH            +L   +      +        T 
Sbjct: 72  AAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQIL---IRNRATDLDARMHDGTTP 127

Query: 157 LYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           L +AA+     +L+ ++      N    +N  DD G   LH 
Sbjct: 128 LILAARLAVEGMLEDLI------NSHADVNAVDDLGKSALHW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 36/159 (22%)

Query: 55  THLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           T LH A S         + ++    + +    +   G +PL LA + +   M+  LI+  
Sbjct: 92  TPLHAAVSADA----QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYV 159
            + V      G + LH+ A         +L          +           R+ET L++
Sbjct: 148 AD-VNAVDDLGKSALHWAAAVNNVDAAVVL----------LKNGANKDMQNNREETPLFL 196

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           AA+    +  KV+L    + N     +  D    +   I
Sbjct: 197 AAREGSYETAKVLL--DHFAN----RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 39/141 (27%)

Query: 82  KQNQYGCSPLHLA-------------LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYV 128
            +   G +PL +A              +     ++   I    +L     R G T LH  
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 129 AEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLR 177
           A          L          +              T L+ A   D   V ++++    
Sbjct: 65  ARYSRSDAAKRL----------LEASADANIQDNMGRTPLHAAVSADAQGVFQILIR--- 111

Query: 178 YVNKDDIINRKDDEGSILLHI 198
             N+   ++ +  +G+  L +
Sbjct: 112 --NRATDLDARMHDGTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 41/169 (24%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+ A  A        LI   A  +D         T L +AA +        ++       
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAV----EGMLEDLINSH 147

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAEN- 131
              +     +  G S LH A   ++    + L+    +++   +Q     TPL   A   
Sbjct: 148 ADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREG 201

Query: 132 ----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLK 170
                 +L          +                  +A +     +++
Sbjct: 202 SYETAKVL----------LDHFANRDITDHMDRLPRDIAQERMHHDIVR 240

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 22/185 (11%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF- 79
           L +AA  G ++ + + + E      Q ++     T LH A    +      I+    +  
Sbjct: 25  LLDAALTGELEVVQQAVKEMND-PSQPNE--EGITALHNAICGAN----YSIVDFLITAG 77

Query: 80  AR--KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA---ENVDL 134
           A     + +G +PLH A   + T + + L+     +      +G T         E    
Sbjct: 78  ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 135 LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-INRKDDEGS 193
              +L    +S+  +      AL+  +     ++         +   + + + R+D    
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--------FREGESVTVLRRDGPEE 189

Query: 194 ILLHI 198
                
Sbjct: 190 TDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 24/153 (15%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
             L  AA  G     LE+++        PS   + N+ G + LH A+  ++  +V  LI 
Sbjct: 23  VLLLDAALTGE----LEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLIT 75

Query: 109 VDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRK-ETALYVAAKNDK- 165
              N V      G TPLH  A   D  +   L     +I   T+    TA        + 
Sbjct: 76  AGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134

Query: 166 -LKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
                  +       + +  +   +      L 
Sbjct: 135 YADCATYLA------DVEQSMGLMNSGAVYALW 161

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 11/120 (9%)

Query: 55  THLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLA--LQNSHTQMVLRLID 108
           T LH AAS         I         +        G +        +  +      L D
Sbjct: 89  TPLHCAASCND----TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144

Query: 109 VDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
           V+++ + +     V  L   +        F      ++L+    +ET  + AA + +   
Sbjct: 145 VEQS-MGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 45/185 (24%)

Query: 25  AQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL--------- 75
             A   D+L + +           Q       LHIA    +    + ++ L         
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTA-----LHIAIERRN----MTLVTLLVENGADVQ 128

Query: 76  --------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL--VRVQGREGVTPL 125
                   K +  R    +G  PL LA   +   +V  L+        +  +   G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 126 HYVAENVDL---LYKFLTACPKSILQV--------------TIRKETALYVAAKNDKLKV 168
           H + E  D      KF+T+    IL +                +  T L +AA + K+ V
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248

Query: 169 LKVML 173
           L  +L
Sbjct: 249 LAYIL 253

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 35/232 (15%), Positives = 64/232 (27%), Gaps = 47/232 (20%)

Query: 12  KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD-----THLHIA---ASM 63
           ++  R    + +A    N   L  L+        ++    F D     T L  A      
Sbjct: 10  RLYDRR--SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 64  GHVNFALEIM----------RLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI----DV 109
           G  +    ++          +   +        G + LH+A++  +  +V  L+    DV
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 110 D---------RNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKE---TA 156
                     +   R     G  PL   A    L + KFL         ++ R     T 
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 157 LYVAAKNDKLKVLKVMLGWLRY----------VNKDDIINRKDDEGSILLHI 198
           L+   +     V         Y               +    + +G   L +
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 41/136 (30%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSH--------- 99
             L +AA        L I++       +P+    ++  G + LH  ++ +          
Sbjct: 150 LPLSLAACTNQ----LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 100 TQMVLRLIDVDRNL------VRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ 148
           T M   ++ +   L        +  R+G+TPL   A +     +  +           LQ
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI-----------LQ 254

Query: 149 VTIRKETALYVAAKND 164
             I +    + AA + 
Sbjct: 255 REIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 23/126 (18%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGH------------VNF 68
           L+ AA    +  +  L+       D   +    +T LH    +               N 
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 69  ALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPL 125
            L +              N+ G +PL LA  +    ++  ++  + +             
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------EPECR 263

Query: 126 HYVAEN 131
           H  A +
Sbjct: 264 HAAAHH 269

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 36/188 (19%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD--THLHIAASMGHVNFALEIMRLKPS 78
              A  +G+ + +  L+   A  I+  +    VD  T LH A    +    +++++    
Sbjct: 44  FLAACSSGDTEEVLRLLERGAD-INYAN----VDGLTALHQACIDDN----VDMVKFLVE 94

Query: 79  F-AR--KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN---- 131
             A   + +  G  PLH A    +  +   LI    + V     EG TPL    E     
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEE 153

Query: 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
            +             + +  +  E A     +       +    WL   +      R   
Sbjct: 154 LLQNE----------VNRQGVDIEAARKEEERIMLRDARQ----WL--NSGHINDVRHAK 197

Query: 191 EGSILLHI 198
            G   LH+
Sbjct: 198 SGGTALHV 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 24/159 (15%)

Query: 57  LHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
              A S G      E +          +     N  G + LH A  + +  MV  L++  
Sbjct: 44  FLAACSSGD----TEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 111 RNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
            N +     EG  PLH  A    +D+  ++L +    +  V    +T L +A +    ++
Sbjct: 97  AN-INQPDNEGWIPLHAAASCGYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 169 LKVMLGWLRYVNKDDI-INRKDDEGSILLHISISRKLES 206
           L+        VN+  + I     E   ++     + L S
Sbjct: 155 LQN------EVNRQGVDIEAARKEEERIMLRDARQWLNS 187

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 25/150 (16%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
             LH AAS G+    L+I                 N  G +PL +A + +  +++   ++
Sbjct: 108 IPLHAAASCGY----LDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 109 VDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
                +    +E    +   A       ++L +   + ++      TAL+VAA     +V
Sbjct: 161 RQGVDIEAARKEEERIMLRDAR------QWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 169 LKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           LK+++           +N KD +G   LH 
Sbjct: 215 LKLLI------QARYDVNIKDYDGWTPLHA 238

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.1 bits (126), Expect = 5e-08
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 44/187 (23%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ A +    + L   +         +D    ++        +       +  +   S  
Sbjct: 143 LDIAEEEAMEELLQNEVNRQG-----VD----IEAARKEEERIML----RDARQWLNSGH 189

Query: 81  ---RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----V 132
               +  + G + LH+A    +T+++  LI    + V ++  +G TPLH  A        
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 133 DLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN 186
            +L          +        V    +TA  VA ++     L+ +        ++ + +
Sbjct: 249 RIL----------VENLCDMEAVNKVGQTAFDVADEDIL-GYLEELQ-----KKQNLLHS 292

Query: 187 RKDDEGS 193
            K ++ S
Sbjct: 293 EKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 57  LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
           L IA          E+++       +Q     +      +         L     N VR 
Sbjct: 143 LDIAEEEAM----EELLQN---EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR- 194

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174
             + G T LH  A     ++L K L      +        T L+ AA   K +  ++++ 
Sbjct: 195 HAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV- 252

Query: 175 WLRYVNKDDIINRKDDEGSILLHI 198
                     +   +  G     +
Sbjct: 253 -----ENLCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
            +  +   +G        +     K    + +   G      A  +  T+ VLRL++   
Sbjct: 10  RNEQLKRWIGS----ETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGA 64

Query: 112 NLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170
           + +     +G+T LH    + ++ + KFL     +I Q        L+ AA    L + +
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 171 VMLGWLRYVNKDDIINRKDDEGSILLHI 198
            ++      ++   +   + EG   L I
Sbjct: 124 YLI------SQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLT 140
           +  +        L         +   +   +   +V+  +G   L   +         L 
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                I    +   TAL+ A  +D + ++K ++           IN+ D+EG I LH 
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLV------ENGANINQPDNEGWIPLHA 112

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.0 bits (139), Expect = 7e-10
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 36/170 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           T LH A S         + ++    + +    +   G +PL LA + +   M+  LI+  
Sbjct: 60  TPLHAAVSADA----QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYV 159
            + V      G + LH+ A         +L          +           R+ET L++
Sbjct: 116 AD-VNAVDDLGKSALHWAAAVNNVDAAVVL----------LKNGANKDMQNNREETPLFL 164

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           AA+    +  KV+L    + N     +  D    +   I+  R     VR
Sbjct: 165 AAREGSYETAKVLL--DHFAN----RDITDHMDRLPRDIAQERMHHDIVR 208

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 40/161 (24%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH+AA         +  +         +    Q+  G +PLH A+      +   LI 
Sbjct: 27  TALHLAARYSR----SDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETAL 157
                +  +  +G TPL   A       ++ L          I        V    ++AL
Sbjct: 80  NRATDLDARMHDGTTPLILAARLAVEGMLEDL----------INSHADVNAVDDLGKSAL 129

Query: 158 YVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           + AA  + +    V+L            + +++     L +
Sbjct: 130 HWAAAVNNVDAAVVLL------KNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
           + ++ G + LHLA + S +    RL++   +   +Q   G TPLH            +L 
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQIL- 77

Query: 137 KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196
             +      +        T L +AA+     +L+ ++      N    +N  DD G   L
Sbjct: 78  --IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI------NSHADVNAVDDLGKSAL 129

Query: 197 HI 198
           H 
Sbjct: 130 HW 131

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 41/172 (23%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+ A  A        LI   A  +D         T L +AA +        ++       
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAV----EGMLEDLINSH 115

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAEN- 131
              +     +  G S LH A   ++    + L+    +++   +Q     TPL   A   
Sbjct: 116 ADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREG 169

Query: 132 ----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVML 173
                 +L          +                  +A +     +++++ 
Sbjct: 170 SYETAKVL----------LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 26/111 (23%)

Query: 99  HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ----- 148
              ++   I    +L     R G T LH  A          L          +       
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL----------LEASADAN 52

Query: 149 -VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                  T L+ A   D   V ++++      N+   ++ +  +G+  L +
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIR-----NRATDLDARMHDGTTPLIL 98

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/202 (17%), Positives = 55/202 (27%), Gaps = 49/202 (24%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
             +    GN             +  + +  P     LH  A+ G       I        
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQ-IPTEPE--PESPIKLHTEAA-GS----YAITEP---IT 113

Query: 81  RK-----QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG-------REGVTPLHYV 128
           R+       ++  + LH    NS  +    LI  +       G        +  TPL   
Sbjct: 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 129 AEN-----VDLLYKFLTACPKSILQ---VTIRKE---TALYVAAKNDKLKVLKVMLGWLR 177
                   V  L          +      TI  +   +AL+ AA N    ++  ML   +
Sbjct: 174 VLARRRRLVAYL----------MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223

Query: 178 Y-VNKDDIINRKDDEGSILLHI 198
              +    I   D  G   L I
Sbjct: 224 LKGD----IEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 39/171 (22%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARK-----------QNQYGCSPLHLALQNSHTQMV 103
           T LH  AS        E          K            +    +PL LA+     ++V
Sbjct: 127 TVLHWIASNSS----AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 104 LRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPK--SILQVTIRKETA 156
             L+    +   +  +   + LH  A N     +  +   L +      I ++     TA
Sbjct: 183 AYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYM---LNSTKLKGDIEELDRNGMTA 238

Query: 157 LYVAAKNDKLKVLKVMLGWLRY-------VNKDD--IINRKDDEGSILLHI 198
           L + A N+    +       +        V+ D     + +  +G   LH 
Sbjct: 239 LMIVAHNEGRDQVASA----KLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 48/183 (26%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFAR------KQNQYGCSPLHLALQNSHTQMVLR--- 105
           + LH AA+         +M    +  +      + ++ G + L +   N     V     
Sbjct: 201 SALHQAAANRD----FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256

Query: 106 LID--VDRNLVRVQGRE-----GVTPLHYVAEN-----VDLLYKFLTACPKSILQV---- 149
           L++     +      ++     G T LHY A+      V  L          + +     
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL----------VGEKGSNK 306

Query: 150 ---TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLES 206
                  +T + +AA+  +++V+  ++       +   +   D        ++ +    +
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLI------QQGASVEAVDATDHTARQLAQANNHHN 360

Query: 207 TVR 209
            V 
Sbjct: 361 IVD 363

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 43/146 (29%)

Query: 55  THLHIAASMGHVNFALEIMRL-----------KPSFARKQNQYGCSPLHLALQNSHTQMV 103
           T L I A     +  +   +L             +    +   G + LH A Q S+  +V
Sbjct: 237 TALMIVAHNEGRD-QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 104 LRLI-----DVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ----- 148
             L+     + D      Q  +G TP+   A+      V  L          I Q     
Sbjct: 296 KYLVGEKGSNKD-----KQDEDGKTPIMLAAQEGRIEVVMYL----------IQQGASVE 340

Query: 149 -VTIRKETALYVAAKNDKLKVLKVML 173
            V     TA  +A  N+   ++ +  
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             L  A+  G+    ++  R +         Y   P      N +  +        +   
Sbjct: 39  HSLLEASYDGY----IKRQRNE------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQI-P 87

Query: 115 RVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174
                E    LH  A     + + +T    +I+       T L+  A N   +  + ++ 
Sbjct: 88  TEPEPESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIV 146

Query: 175 WLRYVNKDDI-----INRKDDEGSILLHI 198
              +  K+ I     +N  D + +  L +
Sbjct: 147 ---HEAKECIAAGADVNAMDCDENTPLML 172

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 37/191 (19%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
              A    NV  +  L+   A   + ++     +  LH AA++       +I+++     
Sbjct: 35  SYYAIADNNVRLVCTLLNAGAL-KNLLEN----EFPLHQAATLED----TKIVKILLFSG 85

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGV-TPLHYVAEN-- 131
              S   + +  G + L+ A+ + + Q V   +  +   +   G+ G  T  ++      
Sbjct: 86  LDDS---QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLND 141

Query: 132 ---VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK 188
              V      L+  P           + +++  KN  + ++ ++L      +     N  
Sbjct: 142 VSIVSYF---LSEIP--STFDLAILLSCIHITIKNGHVDMMILLL------DYMTSTNTN 190

Query: 189 DDEGSI-LLHI 198
           +    I  + +
Sbjct: 191 NSLLFIPDIKL 201

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 35/157 (22%)

Query: 55  THLHIAASMGHVNFALEIMR-LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
           +  + A +  +    + ++  L  + A K       PLH A     T++V  L+    + 
Sbjct: 33  SASYYAIADNN----VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD- 87

Query: 114 VRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ---VTIR----KETALYVAA 161
                 +G T L+Y  ++     V L           + +   +        +T+ Y A 
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLF----------VKKNWRLMFYGKTGWKTSFYHAV 137

Query: 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
             + + ++   L      ++              +HI
Sbjct: 138 MLNDVSIVSYFL------SEIPSTF-DLAILLSCIHI 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 32/163 (19%)

Query: 54  DTHLHIAASMGHVNFALEIMR--LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
            T  + A  +      + I+   L    +        S +H+ ++N H  M++ L+D   
Sbjct: 130 KTSFYHAVMLND----VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185

Query: 112 NLVRVQGREGVTP-LHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK 165
           +           P +    +N     +  L            +  I   +A       D 
Sbjct: 186 S-TNTNNSLLFIPDIKLAIDNKDIEMLQAL-----------FKYDINIYSANLENVLLDD 233

Query: 166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTV 208
            ++ K+++       K            + +    + KL+  +
Sbjct: 234 AEIAKMII------EKHVEYKSDSYTKDLDIV--KNNKLDEII 268

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 30/122 (24%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
           K + +G S  + A+ +++ ++V  L++           E   PLH  A       V +L 
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATLEDTKIVKIL- 81

Query: 137 KFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
                    +           +  TALY A  +  ++ +K+ +       K+  +     
Sbjct: 82  ---------LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV------KKNWRLMFYGK 126

Query: 191 EG 192
            G
Sbjct: 127 TG 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 28/170 (16%), Positives = 45/170 (26%), Gaps = 42/170 (24%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI- 107
           T LH+A    H       +           +   QN  G + LHLA        V +L  
Sbjct: 11  TALHLAVIHQH----EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 108 ---DVDRNLVRVQGREGVTPLHYVAEN-----VDLL-----------YKFLTACPKSILQ 148
               V      V  R G T LH            +L                   +    
Sbjct: 67  AGAGVL-----VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 149 VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            T     A+  +  N + +            +    +  ++ +G   LH+
Sbjct: 122 DTSHAPAAVD-SQPNPENEEEPRDE------DWRLQLEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 37/199 (18%)

Query: 21  LNEAAQAGNVDALYELI---------WEDAYLIDQIDQVP-FVDTHLHIAASMGHVNFAL 70
           L+ A +         L+           D YL    D  P        + +     N   
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 71  EIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
                       +N  G +PLH+A+ +   +MV  L D   +L + +   G TPLH   E
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 131 N-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYV 179
                 ++LL          +              T L  A       + +++       
Sbjct: 202 AQAASVLELL----------LKAGADPTARMYGGRTPLGSALLRPNPILARLLR------ 245

Query: 180 NKDDIINRKDDEGSILLHI 198
                      +       
Sbjct: 246 AHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 12/118 (10%)

Query: 57  LHIAASMGHVNFALEIMRL----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
           LH+A          E++RL         + +   G +PLHLA++     ++  L+    +
Sbjct: 162 LHVAVIHKD----AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 113 LVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
               +   G TPL          L  + L A      +    K +    +  +     
Sbjct: 218 -PTARMYGGRTPLGSALLRPNPILA-RLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 17/149 (11%)

Query: 83  QNQYGCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAEN-----VDLL 135
             + G + LHLA+ + H   +  L+        + +Q   G T LH  A       V+ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
                A    +L       TAL++A +        V+L             R   +  + 
Sbjct: 65  ---YAAGAG-VLVAERGGHTALHLACRVRAHTCACVLL------QPRPSHPRDASDTYLT 114

Query: 196 LHISISRKLESTVRNFGGREGSSLATVEI 224
                +            +          
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 14/83 (16%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH+A           ++ L       P+    +   G +PL  AL   +  +   L  
Sbjct: 194 TPLHLAVEAQA----ASVLELLLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 109 VDRNLVRVQGREGVTPLHYVAEN 131
                    G + ++P      +
Sbjct: 247 HGAP-EPEDGGDKLSPCSSSGSD 268

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
              ++A S        E+        S A + +Q   + LH A    HT++V  L+ +  
Sbjct: 9   MICNLAYSGKL----DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 112 NLVRVQGREGVTPLHYVAE-NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170
             V  +   G +PLH  A    D + K L      +  V     T L+ AA  ++ ++  
Sbjct: 65  P-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 171 VMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           ++L            + KD   +  +H + ++     V 
Sbjct: 124 MLL------EGGANPDAKDHYDATAMHRAAAKGNLKMVH 156

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ AA AG  + +  L+ + A+ ++ ++Q     T LH AAS      A  ++    +  
Sbjct: 77  LHIAASAGXDEIVKALLVKGAH-VNAVNQ--NGCTPLHYAASKNRHEIA-VMLLEGGANP 132

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFL 139
             ++ Y  + +H A    + +MV  L+    +   +Q  EG TPLH   +   +   KFL
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 140 TACPKSILQVTIRKETALYVAAKN 163
                SI      ++T L VA   
Sbjct: 192 VTQGASIYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 28/134 (20%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
                +LA      ++  R++           ++  T LH+         V+ L      
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFL------ 59

Query: 142 CPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
               +              + L++AA     +++K +L       K   +N  +  G   
Sbjct: 60  ----LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL------VKGAHVNAVNQNGCTP 109

Query: 196 LHISISRKLESTVR 209
           LH + S+       
Sbjct: 110 LHYAASKNRHEIAV 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 27/183 (14%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL---KP 77
           ++ AA  G  +   EL  +     + + +       L+      +     +I      K 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLK----SNILYDVLRNNNDEARYKISMFLINKG 65

Query: 78  SFARKQNQYGCSPLHLALQNSH------TQMVLRLID--VDRNLVRVQGREGVTPLHYVA 129
           +  + + + G +      Q         T++    ++   D        +     +    
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT---ALYKPYKIVVFKNI 122

Query: 130 ENVDLLYKFLTACPKSILQ-----VTIR---KETALYVAAKNDKLKVLKVMLGWLRYVN- 180
            N  +    +    K I       + I+     TAL    +  K   LK+M  +++  N 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

Query: 181 KDD 183
           K++
Sbjct: 183 KEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 22/167 (13%), Positives = 61/167 (36%), Gaps = 15/167 (8%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS----HTQMVLRLIDVD 110
             +  AA +G     LE+   +  +  K++    + L+  L+N+      ++ + LI+  
Sbjct: 8   RTVSAAAMLGTYEDFLEL--FEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 111 RNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQ-------VTIRKETALYVAAKN 163
            + ++ + +EG T    + +         T   K  L+       +    +  ++    N
Sbjct: 66  AD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 164 DKLKVLKVMLGWLRYVNKDDI-INRKDDEGSILLHISISRKLESTVR 209
             +   +++  +    ++  + +  KD  G   L      +    ++
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 28/156 (17%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
           D  L  AA  G V    ++  ++    R       +PLH A   +   +V  L+    + 
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD- 67

Query: 114 VRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAK 162
           V  + + G+ PLH           +LL          +          + K T L+ AA 
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELL----------VKHGAVVNVADLWKFTPLHEAAA 117

Query: 163 NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
             K ++ K++L      +  D   +K+ +G+  L +
Sbjct: 118 KGKYEICKLLLQ-----HGAD-PTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.9 bits (123), Expect = 4e-08
 Identities = 34/166 (20%), Positives = 51/166 (30%), Gaps = 45/166 (27%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L EAA+AG+V+ + +L    +     I+      T LH AA        + ++       
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEG--RQSTPLHFAAGYNR----VSVVEYLLQHG 65

Query: 76  -----KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
                K       ++ G  PLH A    H ++   L+      V V      TPLH  A 
Sbjct: 66  ADVHAK-------DKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAA 117

Query: 131 N-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDK 165
                   LL          +              T L +    D 
Sbjct: 118 KGKYEICKLL----------LQHGADPTKKNRDGNTPLDLVKDGDT 153

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 6e-07
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 27/126 (21%)

Query: 84  NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKF 138
           N      L  A +    + V +L  V     R       TPLH+ A       V+ L   
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL--- 61

Query: 139 LTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG 192
                  +                L+ A      +V ++++          ++N  D   
Sbjct: 62  -------LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV------KHGAVVNVADLWK 108

Query: 193 SILLHI 198
              LH 
Sbjct: 109 FTPLHE 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 26/95 (27%)

Query: 55  THLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
             LH A S GH     E+  L                  + +  +PLH A      ++  
Sbjct: 77  VPLHNACSYGH----YEVAELLVKHGAVVNVA-------DLWKFTPLHEAAAKGKYEICK 125

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAEN----VDLL 135
            L+    +    + R+G TPL  V +      DLL
Sbjct: 126 LLLQHGAD-PTKKNRDGNTPLDLVKDGDTDIQDLL 159

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 38/225 (16%), Positives = 67/225 (29%), Gaps = 73/225 (32%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           ++EAA  G+  +L  LI +    ++ I       + LH A   GH    L  +++     
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWA-VNIITA--DHVSPLHEACLGGH----LSCVKILLKHG 115

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHYVAE 130
            + +          +PL  A  +     V  L+     V          +  +P+H  A 
Sbjct: 116 AQVN---GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE------SDLASPIHEAAR 166

Query: 131 N-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYV 179
                 V+ L          I              T LY+A +N +   +K +L     V
Sbjct: 167 RGHVECVNSL----------IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216

Query: 180 NKDDI--------------------------INRKDDEGSILLHI 198
           N+                                K+ EG   + +
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 8e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 26/125 (20%)

Query: 57  LHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI--- 107
           +H AA  GH    +E +               +  +  +PL+LA +N     V +L+   
Sbjct: 161 IHEAARRGH----VECVNSLIAYGGNID---HKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 108 -DVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKND 164
            DV+      QG+   +PLH V      +L    L              +  + +     
Sbjct: 214 ADVN------QGKGQDSPLHAVVRTASEELA-CLLMDFGADTQAKNAEGKRPVELVPPES 266

Query: 165 KLKVL 169
            L  L
Sbjct: 267 PLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 34/157 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           + +H AA  GH       +R    +            SPLH A    H   V  L+    
Sbjct: 61  SPMHEAAIHGH----QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSI-----LQVTIRKETALYVAA 161
             V     +  TPL     +     V+LL          +     +Q      + ++ AA
Sbjct: 117 Q-VNGVTADWHTPLFNACVSGSWDCVNLL----------LQHGASVQPESDLASPIHEAA 165

Query: 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           +   ++ +  ++           I+ K       L++
Sbjct: 166 RRGHVECVNSLI------AYGGNIDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 39/188 (20%)

Query: 24  AAQAGNVDALYELIWEDAYL--IDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR 81
            +   +      L+   +++  +D                  G         RL  +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI--------RLLSNPLM 53

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLY 136
                  SP+H A  + H   +  LI      V +   + V+PLH          V +L 
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKIL- 111

Query: 137 KFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
                    +        VT    T L+ A  +     + ++L           +   + 
Sbjct: 112 ---------LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL------QHGASVQ-PES 155

Query: 191 EGSILLHI 198
           + +  +H 
Sbjct: 156 DLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF- 79
           L  A +      + +L+   A     ++Q    D+ LH            E+  L   F 
Sbjct: 194 LYLACENQQRACVKKLLESGA----DVNQGKGQDSPLHAVVRTAS----EELACLLMDFG 245

Query: 80  --ARKQNQYGCSPLHLALQNSHTQMVL 104
              + +N  G  P+ L    S    + 
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPLAQLF 272

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 31/157 (19%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF-AR-KQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
             L             +    + +   R K N    + L  +       +V R+I    +
Sbjct: 7   VSLPPGKRTNL----RKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 113 LVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVAA 161
              +   EG+T LH          V  L          +              T L+ AA
Sbjct: 63  -PSLPNDEGITALHNAVCAGHTEIVKFL----------VQFGVNVNAADSDGWTPLHCAA 111

Query: 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
             + ++V K ++     V     +   D + +     
Sbjct: 112 SCNNVQVCKFLVESGAAVFA---MTYSDMQTAADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 28/188 (14%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L    +        E I        ++   P     L  ++  G      ++++      
Sbjct: 9   LPPGKRTNLRKTGSERIAHGM----RVKFNPLPLALLLDSSLEGE----FDLVQRIIYEV 60

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL 134
             PS     N  G + LH A+   HT++V  L+    N V     +G TPLH  A   ++
Sbjct: 61  DDPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV 116

Query: 135 -LYKFLT---ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
            + KFL    A   ++    ++         +    +  + +          + +   + 
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY------GVQEKMGIMNK 170

Query: 191 EGSILLHI 198
                L  
Sbjct: 171 GVIYALWD 178

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 27/168 (16%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF-AR--KQNQYGCSPLHLALQNSHTQMVLRLIDV-- 109
           T LH A   GH     EI++    F       +  G +PLH A   ++ Q+   L++   
Sbjct: 72  TALHNAVCAGH----TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

Query: 110 DRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
               +     +         E       +FL    + +  +      AL+     +  ++
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

Query: 169 LKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREG 216
                           I  ++DE  I    +              +EG
Sbjct: 188 PM-------KEGDCMTIIHREDEDEIEWWWA----------RLNDKEG 218

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 9/113 (7%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKS 145
           G   L    + +  +     I      V+      +  L   +   +  L + +      
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                    TAL+ A      +++K ++     VN    +N  D +G   LH 
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVN----VNAADSDGWTPLHC 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 52/177 (29%)

Query: 55  THLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGCSPLHLALQNSHTQMVLR 105
             L  AA  G      + +R+                 +  G SPLHLA Q  H      
Sbjct: 4   KKLLEAARAGQ----DDEVRILMANGAPFTT-------DWLGTSPLHLAAQYGHFSTTEV 52

Query: 106 LID--VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIR 152
           L+   V R+    + +   TPLH  A       V++L          +          + 
Sbjct: 53  LLRAGVSRD---ARTKVDRTPLHMAASEGHANIVEVL----------LKHGADVNAKDML 99

Query: 153 KETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           K TAL+ A +++  +V+++++         D ++ +         ISI    E    
Sbjct: 100 KMTALHWATEHNHQEVVELLIK-----YGAD-VHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.0 bits (113), Expect = 7e-07
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 43/138 (31%)

Query: 55  THLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
           + LH+AA  GH         +          +        +   +PLH+A    H  +V 
Sbjct: 36  SPLHLAAQYGH----FSTTEVLLRAGVSRDAR-------TKVDRTPLHMAASEGHANIVE 84

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRK 153
            L+    + V  +    +T LH+  E+     V+LL          I         +   
Sbjct: 85  VLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELL----------IKYGADVHTQSKFC 133

Query: 154 ETALYVAAKNDKLKVLKV 171
           +TA  ++  N    + ++
Sbjct: 134 KTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 37/127 (29%)

Query: 87  GCSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHYVAEN-----VDLLYK 137
               L  A +      V  L+        +        G +PLH  A+       ++L  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD------WLGTSPLHLAAQYGHFSTTEVL-- 53

Query: 138 FLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE 191
                   +         T    T L++AA      +++V+L           +N KD  
Sbjct: 54  --------LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL------KHGADVNAKDML 99

Query: 192 GSILLHI 198
               LH 
Sbjct: 100 KMTALHW 106

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.4 bits (132), Expect = 3e-09
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 27/146 (18%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFA--RKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           +T    AA         + +            ++ G + L         + V  L +   
Sbjct: 45  ETPWWTAARKAD----EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVA 160
           +L     R G+T LH  A       V+ L          +           R  TAL +A
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEAL----------VELGADIEVEDERGLTALELA 150

Query: 161 AKNDKLKVLKVMLGWLRYVNKDDIIN 186
            +  K       + + R +  + +IN
Sbjct: 151 REILKTTPKGNPMQFGRRIGLEKVIN 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 50/164 (30%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI---DVDR 111
               I    GH              A        +P   A + +  Q + +L+   DVD 
Sbjct: 16  MEYLIEWKDGH----SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 70

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRK------------E 154
                    G T L +VA       V LL                               
Sbjct: 71  ----AVDENGRTALLFVAGLGSDKCVRLL---------------AEAGADLDHRDMRGGL 111

Query: 155 TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           TAL++AA   + +V++ ++           I  +D+ G   L +
Sbjct: 112 TALHMAAGYVRPEVVEALV------ELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----K 76
              AA+  +  AL +L+ ED   +D +D+     T L   A +G      + +RL     
Sbjct: 48  WWTAARKADEQALSQLL-EDRD-VDAVDE--NGRTALLFVAGLGS----DKCVRLLAEAG 99

Query: 77  PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
                +  + G + LH+A      ++V  L+++  + + V+   G+T L    E 
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI 153

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 33/131 (25%)

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDL 134
             +    G     +  ++ H+   +    +  ++V     E  TP    A       +  
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQ 62

Query: 135 LYKFLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK 188
           L           L+      V     TAL   A     K ++++            ++ +
Sbjct: 63  L-----------LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA------EAGADLDHR 105

Query: 189 DDE-GSILLHI 198
           D   G   LH+
Sbjct: 106 DMRGGLTALHM 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LHIA+  G     +  +         P+    ++  G +PLH A  + H ++V  L+ 
Sbjct: 12  TLLHIASIKGD----IPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 109 VDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL 166
                V   G +  +PLH  A+N  VD++ K L +   S   V I     +         
Sbjct: 65  HKAL-VNTTGYQNDSPLHDAAKNGHVDIV-KLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 167 KVLK 170
            +L 
Sbjct: 123 SLLL 126

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 30/137 (21%)

Query: 84  NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKF 138
           N  G + LH+A        V  L+    +   V+   G TPLH    +     V+LL   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELL--- 62

Query: 139 LTACPKSILQV-------TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE 191
                   LQ          + ++ L+ AAKN  + ++K++L      +     N  +  
Sbjct: 63  --------LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL------SYGASRNAVNIF 108

Query: 192 GSILLHISISRKLESTV 208
           G   +  +    ++S +
Sbjct: 109 GLRPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+EA   G++  +  L+   A L++        D+ LH AA  GH    ++I++L     
Sbjct: 47  LHEACNHGHLKVVELLLQHKA-LVNTTGY--QNDSPLHDAAKNGH----VDIVKLLLSYG 99

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
              +     N +G  P+      S   ++L   
Sbjct: 100 ASRN---AVNIFGLRPVDYTDDESMKSLLLLPE 129

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 57/181 (31%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH AAS       +E+  L       P+     N +G S + +A      + +     
Sbjct: 126 TPLHEAASKNR----VEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 109 --------VDRNLVRV------------QGREGVTPLHYVAENVDLLYKFLTACPKSILQ 148
                    + +L +V            Q +   T LH    ++           K + +
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR-------KQVAE 231

Query: 149 VTIRK-----------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
           + +RK            T L+VAA+     V++V+            +N  D  G   LH
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH------KHGAKMNALDSLGQTALH 285

Query: 198 I 198
            
Sbjct: 286 R 286

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 24  AAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL------KP 77
           AA+  ++  + + +  +     Q       +T LH A +  H     ++  L        
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSH---ETALHCAVASLHPK-RKQVAELLLRKGANV 240

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LY 136
           +   ++N+   +PLH+A + +H  ++  L       +      G T LH  A    L   
Sbjct: 241 N---EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTC 296

Query: 137 KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196
           + L +       ++++  TA  +  +  +             +++   +   D +    L
Sbjct: 297 RLLLSYGSDPSIISLQGFTAAQMGNEAVQQ-----------ILSESTPMRTSDVDYR--L 343

Query: 197 HI 198
             
Sbjct: 344 LE 345

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             L  AA  G+    + ++          +    +PLHLA   +  ++V  L+    + V
Sbjct: 26  DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-V 84

Query: 115 RVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVAAKN 163
             + + G+ PLH           +LL          +        + + + T L+ AA  
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELL----------LKHGACVNAMDLWQFTPLHEAASK 134

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           ++++V  ++L      +        +  G   + +
Sbjct: 135 NRVEVCSLLL------SHGADPTLVNCHGKSAVDM 163

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 41/188 (21%)

Query: 25  AQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNF------------ALEI 72
               +      L+                   LHIA     +                  
Sbjct: 67  QIDKDSGNPKPLVNAQCTDEFYQGHSA-----LHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 73  MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL--VRVQGREGVTPLHYVAE 130
            R           +G  PL LA       +V  L++       +      G T LH +  
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 131 NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
             D                   + +AL +   +  L++   +           +    + 
Sbjct: 182 IAD----------------NSPENSALVIHMYDGLLQMGARLC------PTVQLEEISNH 219

Query: 191 EGSILLHI 198
           +G   L +
Sbjct: 220 QGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 41/198 (20%)

Query: 19  QRLNEAAQAGNVDALYELI----WEDAYLIDQIDQVPFV-DTHLHIAA---SMGHVNFAL 70
            RL      G  + L  L+    W   YL D          T L  A      G     +
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 71  EIMRLKPSFA----------RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE 120
            ++++                 +   G S LH+A++    Q V  L++   + V ++   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACG 122

Query: 121 GVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVN 180
                H                           E  L +AA   +  V+  +   L   +
Sbjct: 123 RFFQKHQGTCFYF-------------------GELPLSLAACTKQWDVVTYL---LENPH 160

Query: 181 KDDIINRKDDEGSILLHI 198
           +   +   D  G+ +LH 
Sbjct: 161 QPASLEATDSLGNTVLHA 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 37/143 (25%)

Query: 21  LNEAAQAGNVDALYELI----------WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFAL 70
           L+ A +  ++  +  L+              +   Q     F +  L +AA         
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ----W 149

Query: 71  EIMRL------KPSFARKQNQYGCSPLHL----------------ALQNSHTQMVLRLID 108
           +++        +P+     +  G + LH                  + +   QM  RL  
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 109 VDRNLVRVQGREGVTPLHYVAEN 131
             +    +   +G+TPL   A+ 
Sbjct: 210 TVQL-EEISNHQGLTPLKLAAKE 231

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
           ++ L I    G +     +           N  G +PL LA +    ++   ++      
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHILQ----- 242

Query: 114 VRVQGREGVTPLHY 127
              +   G    H+
Sbjct: 243 ---REFSGAAAHHH 253

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.5 bits (130), Expect = 5e-09
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 41/163 (25%)

Query: 53  VDTHLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRL 106
           +   L  AA  G      + +R+        +    ++  G +PLHLA  N H ++V  L
Sbjct: 14  LGKKLLEAARAGR----DDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 107 IDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKET 155
           +    + V      G+TPL   A       V++L          +          +   T
Sbjct: 67  LKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVL----------LKNGADVNANDMEGHT 115

Query: 156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
            L++AA    L++++V+L           +N +D  G     I
Sbjct: 116 PLHLAAMFGHLEIVEVLL------KNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 29/133 (21%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           T LH+AA  GH    LEI+ +     +     +  G +PL LA    H ++V  L+    
Sbjct: 49  TPLHLAAFNGH----LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVA 160
           + V     EG TPLH  A       V++L          +             +TA  ++
Sbjct: 105 D-VNANDMEGHTPLHLAAMFGHLEIVEVL----------LKNGADVNAQDKFGKTAFDIS 153

Query: 161 AKNDKLKVLKVML 173
             N    + +++ 
Sbjct: 154 IDNGNEDLAEILQ 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 44/210 (20%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----K 76
              AA+  +  AL +L+ ED   +D +D+     T L   A +G      + +RL     
Sbjct: 49  WWTAARKADEQALSQLL-EDRD-VDAVDE--NGRTALLFVAGLGS----DKCVRLLAEAG 100

Query: 77  PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN----- 131
                +  + G + LH+A      ++V  L+++  + + V+   G+T L    E      
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTP 159

Query: 132 VDLL------------------YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
                                   F  A    I++   + +   Y+    D      V  
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219

Query: 174 GWLRYVNKDDIINRKDDEGSILLHISISRK 203
                   +     KD E    L  +++  
Sbjct: 220 VH----VAE--DVAKDYEDG--LEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 43/174 (24%)

Query: 54  DTHLHIAASMGHVNFALEIMR--LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           +T    AA         + +   L+       ++ G + L         + V  L +   
Sbjct: 46  ETPWWTAARKAD----EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 112 NLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRK-----------ETALYVA 160
           +L     R G+T LH  A  V             +++  +              TAL +A
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVR----------PEVVEALVELGADIEVEDERGLTALELA 151

Query: 161 AKNDKLKVLKVMLGWLRYVNKDDI----------------INRKDDEGSILLHI 198
            +  K       + + R +  + +                I  K  +G  + ++
Sbjct: 152 REILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYL 205

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 26/152 (17%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI---DVDR 111
               I    GH              A        +P   A + +  Q + +L+   DVD 
Sbjct: 17  MEYLIEWKDGH----SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 71

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL 166
                    G T L +VA       V LL     A      +      TAL++AA   + 
Sbjct: 72  ----AVDENGRTALLFVAGLGSDKCVRLL---AEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           +V++ ++           I  +D+ G   L +
Sbjct: 125 EVVEALV------ELGADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 21/125 (16%)

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDL 134
             +    G     +  ++ H+   +    +  ++V     E  TP    A       +  
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQ 63

Query: 135 LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE-GS 193
           L +       +   V     TAL   A     K ++++            ++ +D   G 
Sbjct: 64  LLE--DRDVDA---VDENGRTALLFVAGLGSDKCVRLLA------EAGADLDHRDMRGGL 112

Query: 194 ILLHI 198
             LH+
Sbjct: 113 TALHM 117

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 35/158 (22%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             L  AA+ G     LE +            QN +G + L +  +  + ++  RL+    
Sbjct: 7   NELASAAARGD----LEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGA 61

Query: 112 NLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYVA 160
           N   ++ R G   +H  A       +  L          +                L++A
Sbjct: 62  N-PDLKDRTGFAVIHDAARAGFLDTLQTL----------LEFQADVNIEDNEGNLPLHLA 110

Query: 161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           AK   L+V++ ++      +    +  ++ +G     +
Sbjct: 111 AKEGHLRVVEFLVK-----HTASNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 3e-07
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF-ARK--QNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             +H AA  G     L+ ++    F A    ++  G  PLHLA +  H ++V  L+    
Sbjct: 72  AVIHDAARAGF----LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127

Query: 112 NLVRVQGREGVTPLHYVAEN 131
           + V  +  +G T        
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L  AA  G+++ L  L+  +   ++  +   F  T L +   +G+     EI R      
Sbjct: 9   LASAAARGDLEQLTSLLQNNVN-VNAQNG--FGRTALQVMK-LGN----PEIARRLLLRG 60

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
             P     +++ G + +H A +      +  L++   + V ++  EG  PLH  A+    
Sbjct: 61  ANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHL 116

Query: 132 --VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
             V+ L   +     ++     + +TA  +A    + +V+ +M 
Sbjct: 117 RVVEFL---VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 27/164 (16%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L+ AA  G+V  +  L+  +    D +++  F  T L +    G       I        
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQVMMF-GS----TAIALELLKQG 58

Query: 76  -KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
             P+    Q+  G SP+H A +      +  L++   + V V    G  P+H   +    
Sbjct: 59  ASPN---VQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHT 114

Query: 132 --VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
             V  L     +    + +   R  T L +A +     ++ ++ 
Sbjct: 115 AVVSFLAA--ES---DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             L  AA+ G V     ++  +       N++G + L + +    T + L L+    +  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS-P 61

Query: 115 RVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172
            VQ   G +P+H  A    +D L K L      +          +++A +     V+  +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 173 LGWLRYVNKDDIINRKDDEGSILLHI 198
                   + D ++R+D  G   L +
Sbjct: 121 A------AESD-LHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFAR--KQNQYGCSPLHLALQNSHTQMVLRLID 108
             +H+A   GH      ++    + +   +++  G +PL LALQ     +V  L  
Sbjct: 103 LPIHLAVQEGH----TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.8 bits (123), Expect = 2e-08
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 53/145 (36%)

Query: 55  THLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
           T LH+AA  GH    LE+++L          K       ++ G +PLHLA +N H ++V 
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVK 52

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRK------ 153
            L++   + V  + + G TPLH  A N     V LL               +        
Sbjct: 53  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL---------------LEAGADVNA 96

Query: 154 -----ETALYVAAKNDKLKVLKVML 173
                 T L++AA+N  L+V+K++L
Sbjct: 97  KDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 38/128 (29%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
           G +PLHLA +N H ++V  L++   + V  + + G TPLH  A N     V LL      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------ 54

Query: 142 CPKSILQVTIRK-----------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
                    +              T L++AA+N  L+V+K++L         D +N KD 
Sbjct: 55  ---------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----AGAD-VNAKDK 99

Query: 191 EGSILLHI 198
            G   LH+
Sbjct: 100 NGRTPLHL 107

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 55  THLHIAASMGHVNFALEIMR-LKPSFA--RKQNQYGCSPLHLALQNSH---TQMVLRLID 108
           T LH   S+ +    LE+++ L    +     +  G S L  A+++ +   +     L+D
Sbjct: 133 TPLHWLTSIAN----LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-------------VDLLYKFLTACPKSILQVTIRKET 155
                + ++     T LH++                +D+L  ++       +Q    ++ 
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 156 ALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +       ++   +   L         +++N +D  G   L+I+      S V 
Sbjct: 249 SKPNDKNGERKDSILENLDLKW--IIANMLNAQDSNGDTCLNIAARLGNISIVD 300

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFAR---KQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
                   +    +  LE + LK   A     Q+  G + L++A +  +  +V  L+D  
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 111 RNLVRVQGREGVTPLHYVAEN 131
            +   +  + G+ P+ + A  
Sbjct: 307 AD-PFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH--------YVAENVD 133
             +++G +PLH     ++ ++V  L+    N        G + L         Y +   +
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFE 184

Query: 134 LLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV--------LKVMLGWLRYVNKDDII 185
            L  +L  C   ++       T L+       +          L +++GW+       I 
Sbjct: 185 ALLDYLYPC---LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 186 NRKDDEGSILLHISISRKLE 205
           +  +++ S     +  RK  
Sbjct: 242 SGTNEKESKPNDKNGERKDS 261

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 32/160 (20%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T L+IA         +EI +         +    QN    SP   A     T+++  ++ 
Sbjct: 41  TPLNIAVHNND----IEIAKALIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 109 VDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAA-- 161
                +    R G   L   AE      V LL   L    + I        TAL  A   
Sbjct: 94  HATPDLNKHNRYGGNALIPAAEKGHIDNVKLL---LEDGREDIDFQNDFGYTALIEAVGL 150

Query: 162 ---KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
                    ++K+++            + KD+ G   +  
Sbjct: 151 REGNQLYQDIVKLLM------ENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGCSPLHLALQNSHTQMVLRLIDV 109
           D+    A + G      EI+      A     K N+YG + L  A +  H   V  L++ 
Sbjct: 73  DSPYLYAGAQGR----TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 110 DRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRK-----------ETALY 158
            R  +  Q   G T L       +    +     + I+++ +              TA+ 
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLY-----QDIVKLLMENGADQSIKDNSGRTAMD 183

Query: 159 VAAKNDKLKVLKVML 173
            A +    ++ K++ 
Sbjct: 184 YANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 37/132 (28%)

Query: 83  QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYK 137
           +     + L  A Q    ++   L D     V     EG TPL+    N        L  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKAL-- 58

Query: 138 FLTACPKSILQVTIRK-----------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN 186
                        I +           ++    A    + ++L  ML      +    +N
Sbjct: 59  -------------IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK-----HATPDLN 100

Query: 187 RKDDEGSILLHI 198
           + +  G   L  
Sbjct: 101 KHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 35/159 (22%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF---ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             L  A          ++  +         + +  G +PL++A+ N+  ++   LID   
Sbjct: 8   ALLEAANQRDT----KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 112 NLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRK------------ETALYV 159
           + + +Q     +P  Y                  IL   ++               AL  
Sbjct: 64  D-INLQNSISDSPYLYAGAQ----------GRTEILAYMLKHATPDLNKHNRYGGNALIP 112

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           AA+   +  +K++L      +  + I+ ++D G   L  
Sbjct: 113 AAEKGHIDNVKLLLE-----DGREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
              A   G  + L  ++      +++ ++  +    L  AA  GH    ++ ++L     
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNR--YGGNALIPAAEKGH----IDNVKLLLEDG 129

Query: 81  R----KQNQYGCSPLHLA-----LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
           R     QN +G + L  A         +  +V  L++   +   ++   G T + Y  + 
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQK 188

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.5 bits (117), Expect = 7e-08
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 14/83 (16%)

Query: 55  THLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           T LH+AA  GH    LE+++L        +    +++ G +PLHLA +N H ++V  L++
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 109 VDRNLVRVQGREGVTPLHYVAEN 131
              + V  + + G TPLH  A N
Sbjct: 57  AGAD-VNAKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 5e-05
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 32/103 (31%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
           G +PLHLA +N H ++V  L++   + V  + + G TPLH  A N     V LL      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------ 54

Query: 142 CPKSILQVTIRK-----------ETALYVAAKNDKLKVLKVML 173
                    +              T L++AA+N  L+V+K++L
Sbjct: 55  ---------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 37.3 bits (88), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 15/62 (24%)

Query: 55  THLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
           T LH+AA  GH    LE+++L              +++ G +PLHLA +N H ++V  L+
Sbjct: 37  TPLHLAARNGH----LEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 108 DV 109
           + 
Sbjct: 89  EA 90

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.9 bits (118), Expect = 8e-08
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 17/125 (13%)

Query: 54  DTHLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           D     A   G     L+ ++    K     +  + G  PLH A      +++  L+   
Sbjct: 8   DKEFMWALKNGD----LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK 165
            + +    +  +TPL           V    K L +             TA         
Sbjct: 64  AD-INAPDKHHITPLLSAVYEGHVSCV----KLLLSKGADKTVKGPDGLTAFEATDNQAI 118

Query: 166 LKVLK 170
             +L+
Sbjct: 119 KALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 21/131 (16%), Positives = 34/131 (25%), Gaps = 38/131 (29%)

Query: 84  NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKF 138
                     AL+N     V   +    + V      G  PLHY A+      ++ L   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFL--- 59

Query: 139 LTACPKSILQVTIRK-----------ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
                       + K            T L  A     +  +K++L      +K      
Sbjct: 60  ------------LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL------SKGADKTV 101

Query: 188 KDDEGSILLHI 198
           K  +G      
Sbjct: 102 KGPDGLTAFEA 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.5 bits (117), Expect = 9e-08
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF---ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           T LH AA  GH     E ++   S       +++ G +PLHLA +N H ++V  L+    
Sbjct: 11  TPLHNAAKNGH----AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 112 NLVRVQGREGVTPLHYVAEN 131
           + V  + ++G TP H   +N
Sbjct: 67  D-VNARSKDGNTPEHLAKKN 85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 28/129 (21%)

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDL 134
               ++ G +PLH A +N H + V +L+    + V  + ++G TPLH  A+N     V L
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 135 LYKFLTACPKSILQ---VTIRKE---TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK 188
           L          + +   V  R +   T  ++A KN   +++K++          D +N +
Sbjct: 61  L----------LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA-----KGAD-VNAR 104

Query: 189 DDEGSILLH 197
               S   H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
           T LH+AA  GH     EI++L   K +    +++ G +P HLA +N H ++V  L     
Sbjct: 44  TPLHLAAKNGH----AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

Query: 112 NLVRVQGREGVTPLHY 127
           + V  +        H+
Sbjct: 100 D-VNARSWGSSHHHHH 114

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 32/151 (21%)

Query: 55  THLHIAASMGH-------------VNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQ 101
           T LHIA                  V+        +P        +G  PL LA   +   
Sbjct: 95  TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154

Query: 102 MVLRLIDVDRNL--VRVQGREGVTPLHY---VAENVDLLYKFLTACPKSILQVTIRK--- 153
           +V  L +       +R Q   G T LH    +A+N     KF+T     +L    +    
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214

Query: 154 -----------ETALYVAAKNDKLKVLKVML 173
                       + L +AAK  K+ + + ++
Sbjct: 215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 48/210 (22%)

Query: 12  KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD--------THLHIAA-- 61
           K+ +R    L +    G+ D L  L+   ++L+    ++   +        T L  A   
Sbjct: 2   KVFNRP--ILFDIVSRGSPDGLEGLL---SFLLTHKKRLTDEEFREPSTGKTCLPKALLN 56

Query: 62  -SMGHVNFA---LEIMRLKPSFARKQN-------QYGCSPLHLALQNSHTQMVLRLIDVD 110
            S G  +     L+I     +     N         G + LH+A++      V  L++  
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-- 114

Query: 111 RNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170
                 +G          A +V    +     PK         E  L +AA  ++  ++ 
Sbjct: 115 ------KG----------A-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH 157

Query: 171 VMLGWLRYVNKDDIINRKDDEGSILLHISI 200
            +       +K   + R+D  G+ +LH  +
Sbjct: 158 YL---TENGHKQADLRRQDSRGNTVLHALV 184

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 49/165 (29%)

Query: 55  THLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
           T L +A  +G        +            K       +  G + L  A++N+   +  
Sbjct: 37  TPLMVACMLGM----ENAIDKLVENFDKLEDK-------DIEGSTALIWAVKNNRLGIAE 85

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRK 153
           +L+    N V  +   G TPL +            L          +          +  
Sbjct: 86  KLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFL----------LEHGANVNDRNLEG 134

Query: 154 ETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           ET L VA+K  + +++K +L           I+ +D  G      
Sbjct: 135 ETPLIVASKYGRSEIVKKLL------ELGADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 41/159 (25%)

Query: 54  DTHLHIAASMGH---VNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           +    I         ++F              ++ Y  +PL +A        + +L++  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNY----------RDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 111 RNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRKETALYV 159
              +  +  EG T L +  +N      + L          + +           +T L  
Sbjct: 59  DK-LEDKDIEGSTALIWAVKNNRLGIAEKL----------LSKGSNVNTKDFSGKTPLMW 107

Query: 160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           +      ++   +L           +N ++ EG   L +
Sbjct: 108 SIIFGYSEMSYFLL------EHGANVNDRNLEGETPLIV 140

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 43/138 (31%)

Query: 55  THLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQMVL 104
           T L  A         L I             K       +  G +PL  ++   +++M  
Sbjct: 70  TALIWAVKNNR----LGIAEKLLSKGSNVNTK-------DFSGKTPLMWSIIFGYSEMSY 118

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTIRK 153
            L++   N V  +  EG TPL   ++      V  L          +          +  
Sbjct: 119 FLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKL----------LELGADISARDLTG 167

Query: 154 ETALYVAAKNDKLKVLKV 171
            TA   A    + +V+K+
Sbjct: 168 LTAEASARIFGRQEVIKI 185

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 34/127 (26%)

Query: 83  QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYK 137
            ++ G     +  + S  Q +    D  RN    +     TPL           +D L  
Sbjct: 4   MDKNGEIVEKIKDEKSINQNL----DFLRN---YRDSYNRTPLMVACMLGMENAIDKL-- 54

Query: 138 FLTACPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE 191
                   +          I   TAL  A KN++L + + +L      +K   +N KD  
Sbjct: 55  --------VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL------SKGSNVNTKDFS 100

Query: 192 GSILLHI 198
           G   L  
Sbjct: 101 GKTPLMW 107

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 43/142 (30%)

Query: 53  VDTHLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGCSPLHLALQNSHTQM 102
           +   L  AA  G      + +R+          K       ++YG +PL+LA  + H ++
Sbjct: 14  LGKKLLEAARAGQ----DDEVRILMANGADVNAK-------DEYGLTPLYLATAHGHLEI 62

Query: 103 VLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQ------VTI 151
           V  L+    + V      G TPLH  A        ++L          +           
Sbjct: 63  VEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVL----------LKHGADVNAQDK 111

Query: 152 RKETALYVAAKNDKLKVLKVML 173
             +TA  ++  N    + +++ 
Sbjct: 112 FGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 28/123 (22%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
               L  A +      V  L+    + V  +   G+TPL+    +     V++L      
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVL------ 66

Query: 142 CPKSILQ------VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
               +        V     T L++AA    L++ +V+L           +N +D  G   
Sbjct: 67  ----LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL------KHGADVNAQDKFGKTA 116

Query: 196 LHI 198
             I
Sbjct: 117 FDI 119

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 19/162 (11%)

Query: 54  DTHLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           +    +AA  G  + AL+ + L        +           LA +N H  ++ RL ++ 
Sbjct: 93  EVICFVAAITGCSS-ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 151

Query: 111 RNLVRV-QGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAA-KN 163
              +      E        AEN     ++ L +   A  ++   +      A   AA   
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE--LAPTEATAMIQAENYYAFRWAAVGR 209

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLE 205
               V+  +L      +   ++   +          ++  + 
Sbjct: 210 GHHNVINFLL------DCPVMLAYAEIHEFEYGEKYVNPFIA 245

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 54  DTHLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
           D  L  AA+ G     +E +R        P+     N++G  P+ + +     Q+   L+
Sbjct: 13  DAGLATAAARGQ----VETVRQLLEAGADPN---ALNRFGRRPIQVMMMG-SAQVAELLL 64

Query: 108 DVDRNLVRVQGREGVT-PLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKND 164
                         +T P+H  A    +D L   L      +          + +A +  
Sbjct: 65  LHGAE-PNCADPATLTRPVHDAAREGFLDTL-VVLHRAGARLDVCDAWGRLPVDLAEEQG 122

Query: 165 KLKVLKVML 173
              + + + 
Sbjct: 123 HRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 28/128 (21%)

Query: 82  KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN----VDLLYK 137
                  + L  A      + V +L++   +      R G  P+  +        +LL  
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMGSAQVAELL-- 63

Query: 138 FLTACPKSILQ---VTIRKE----TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
                   +L                ++ AA+   L  L V+            ++  D 
Sbjct: 64  --------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-----AGAR-LDVCDA 109

Query: 191 EGSILLHI 198
            G + + +
Sbjct: 110 WGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 19/118 (16%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L  AA  G V+ + +L+   A   + +++  F    + +   MG      ++  L     
Sbjct: 16  LATAAARGQVETVRQLLEAGAD-PNALNR--FGRRPIQVMM-MGS----AQVAELLLLHG 67

Query: 76  -KPSFARKQNQYGC-SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
            +P+     +      P+H A +      ++ L       + V    G  P+    E 
Sbjct: 68  AEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 13/58 (22%)

Query: 57  LHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
           +H AA  G     L+ + +      +       + +G  P+ LA +  H  +   L  
Sbjct: 82  VHDAAREGF----LDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 19/129 (14%)

Query: 54  DTHLHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
              L  AA+ G     +E +R        P+     N YG  P+ + +     ++   L+
Sbjct: 13  ADWLATAAARGR----VEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLL 64

Query: 108 DVDRNLVRVQGREGVT-PLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKND 164
                         +T P+H  A    +D L   L      +          + +A +  
Sbjct: 65  LHGAE-PNCADPATLTRPVHDAAREGFLDTL-VVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 165 KLKVLKVML 173
              V + + 
Sbjct: 123 HRDVARYLR 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 19/81 (23%)

Query: 57  LHIAASMGHVNFALEIMRL------KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVD 110
           +H AA  G     L+ + +      +      ++ +G  P+ LA +  H  +   L    
Sbjct: 82  VHDAAREGF----LDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRAAA 134

Query: 111 RNLVRVQGREGVTPLHYVAEN 131
                     G       A  
Sbjct: 135 GGT------RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 36/127 (28%)

Query: 87  GCSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHYVAEN----VDLLYKF 138
               L  A      + V  L+    + +          G  P+  +        +LL   
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVMMMGSARVAELL--- 63

Query: 139 LTACPKSILQ---VTIRKE----TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDE 191
                  +L                ++ AA+   L  L V+            ++ +D  
Sbjct: 64  -------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-----AGAR-LDVRDAW 110

Query: 192 GSILLHI 198
           G + + +
Sbjct: 111 GRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 23/120 (19%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----- 75
           L  AA  G V+ +  L+   A   +  +   +    + +   MG       +  L     
Sbjct: 16  LATAAARGRVEEVRALLEAGAN-PNAPNS--YGRRPIQVMM-MGS----ARVAELLLLHG 67

Query: 76  -KPSFARKQNQYGC-SPLHLALQNSHTQMVLRLIDV--DRNLVRVQGREGVTPLHYVAEN 131
            +P+     +      P+H A +      ++ L       +   V+   G  P+    E 
Sbjct: 68  AEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEEL 121

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSF---ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
             L  AA  G      + +R+  +       +++ G +PLHLA +N H ++V  L++   
Sbjct: 26  KKLLEAARAGQ----DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 112 NLVRVQGREGVTPLHYVAEN 131
           + V  Q + G T      +N
Sbjct: 82  D-VXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 14/118 (11%)

Query: 60  AASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR 119
            +S  H                         L  A +      V  L+    + V  + +
Sbjct: 1   GSSHHH----HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDK 55

Query: 120 EGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172
            G TPLH  A N     V    K L      +       +TA  ++  N    + +++
Sbjct: 56  NGSTPLHLAARNGHLEVV----KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.94

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.9e-39  Score=270.81  Aligned_cols=203  Identities=20%  Similarity=0.200  Sum_probs=157.9

Q ss_pred             cccCCCHHHHHHHHhC-------------CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch
Q 022200           13 IKSRTDQRLNEAAQAG-------------NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF   79 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   79 (301)
                      .+..|.||||+|+..|             +.++++.|++.|+++....+.  .|+||||+|+..|+.+++++|++.++++
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   83 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR--TGETALHLAARYSRSDAAKRLLEASADA   83 (253)
T ss_dssp             ----------------------------------------------CCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3577999999999988             899999999999998765444  5999999999999999999999999876


Q ss_pred             hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHH
Q 022200           80 ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALY  158 (301)
Q Consensus        80 ~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh  158 (301)
                       +.+|..|.||||+|+..|+.+++++|++.++..++.++..|.||||+|+.. ...++++|++.|++++.+|..|+||||
T Consensus        84 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           84 -NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence             788999999999999999999999999999855999999999999999999 888999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          159 VAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       159 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      +|+..|+.+++++|+++      |++++.+|..|+||||+|+..       +|+++     .+|..|+||+++|+...
T Consensus       163 ~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence            99999999999999996      999999999999999999998       67776     78999999999996653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.3e-38  Score=261.52  Aligned_cols=197  Identities=20%  Similarity=0.211  Sum_probs=180.5

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhC--CchhhhcCCCCCcHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK--PSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A   94 (301)
                      |+||||.|++.|+.++++.|++.+++.....+.  .|+||||+|+..|+.+++++|++.+  .+.....+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCC--CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            679999999999999999999999987664444  5999999999999999999999998  555443789999999999


Q ss_pred             HHCCCHHHHHHHhhcC--CccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVD--RNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +..|+.+++++|++.|  ++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999998  77 889999999999999999 8889999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcc-cccccccCCCCcHHHHHHHH-------HHH-hh-----hhhCCCCchhhhhhh
Q 022200          172 MLGWLRYVNKD-DIINRKDDEGSILLHISISR-------KLE-ST-----VRNFGGREGSSLATV  222 (301)
Q Consensus       172 Ll~~~~~~~~~-~~~~~~d~~g~tpLh~A~~~-------~Ll-~~-----~~n~~g~tpl~~a~~  222 (301)
                      |+++      | ++++.+|..|+||||+|+..       +|+ +.     .+|.+|+||+++|..
T Consensus       159 Ll~~------g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          159 LCGL------GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHTT------TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHhc------CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            9986      7 99999999999999999988       677 54     889999999999954

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-38  Score=271.66  Aligned_cols=205  Identities=18%  Similarity=0.100  Sum_probs=171.3

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|++.|+.++|+.|++.+++.......+..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            4678999999999999999999999998874322222336999999999999999999999999887 788999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCc----------------------------------------------cceecCCCCCchhH
Q 022200           93 LALQNSHTQMVLRLIDVDRN----------------------------------------------LVRVQGREGVTPLH  126 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~----------------------------------------------~~~~~d~~g~tpLh  126 (301)
                      +|+..|+.+++++|++.+++                                              .++.+|..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            99999999999999997754                                              15667889999999


Q ss_pred             HHHhc-HHHHHHHHHhCCcchhccccC-CCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH--
Q 022200          127 YVAEN-VDLLYKFLTACPKSILQVTIR-KETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR--  202 (301)
Q Consensus       127 ~A~~~-~~~~~~lL~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~--  202 (301)
                      +|+.. ...++++|++.|++++..+.. |+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..  
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA------GADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc------CCCCcccccCCCCHHHHHHHcCC
Confidence            99999 889999999999999999865 99999999999999999999996      999999999999999999988  


Q ss_pred             -----HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          203 -----KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       203 -----~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                           +|+++     .+|..|.||+++|....
T Consensus       238 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHHHTTCCCCCCC--------------
T ss_pred             cHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence                 67777     88999999999996544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.5e-38  Score=260.37  Aligned_cols=201  Identities=22%  Similarity=0.196  Sum_probs=185.0

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||.|+..|+.++++.|++.|.+++....   .|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   83 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL   83 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC---CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence            46689999999999999999999999998765443   4999999999999999999999998876 7789999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.++..++..+..|.||||+|+.. ..+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999444899999999999999999 88899999999999999999999999999999999999999


Q ss_pred             HHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          173 LGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      +++      |++++.+|..|.||||+|+..       +|+++     .+|.+|+||+|+|+...
T Consensus       164 l~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          164 LAA------KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             HTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             HHc------CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence            986      999999999999999999998       66666     78999999999996653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-37  Score=257.43  Aligned_cols=198  Identities=26%  Similarity=0.314  Sum_probs=183.5

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      .++++||.|++.|+++.++.|++.++......+.  .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCC--CCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence            4678999999999999999999998876554444  5999999999999999999999998876 778999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999 899999999999999999 8889999999999999999999999999999999999999999


Q ss_pred             hhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          175 WLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       175 ~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      +      |++++.+|..|+||||+|+..       +|+++     .+|..|+||+++|...
T Consensus       161 ~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  215 (231)
T 3aji_A          161 Y------KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG  215 (231)
T ss_dssp             T------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHH
T ss_pred             c------CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhh
Confidence            6      999999999999999999988       67776     7899999999999654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2e-37  Score=258.79  Aligned_cols=200  Identities=20%  Similarity=0.211  Sum_probs=181.1

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHH----cChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIW----EDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC   88 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   88 (301)
                      .+..|.||||+|++.|+.++++.|++    .+.+++....   .|.||||+|+..|+.+++++|++.++++ +.++..|.
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---LRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc---cCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            46789999999999999999999997    4555443332   5999999999999999999999999876 77899999


Q ss_pred             cHHHHHHHCCCHHHHHHHhhcCC----ccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHHH
Q 022200           89 SPLHLALQNSHTQMVLRLIDVDR----NLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAAK  162 (301)
Q Consensus        89 tpLh~A~~~~~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~~  162 (301)
                      ||||+|+..|+.+++++|++.++    + ++..|..|.||||+|+.. ..+++++|++.|++++..+ ..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            99999999999999999999987    5 888999999999999999 8899999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          163 NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       163 ~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      .|+.+++++|+++      |++++.+|..|+||||+|+..       +|+++     .+|..|+||+|+|...
T Consensus       160 ~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          160 NNSLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             TTCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence            9999999999996      999999999999999999998       67766     7899999999999654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=263.04  Aligned_cols=197  Identities=19%  Similarity=0.116  Sum_probs=180.1

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|+..|+.++++.|++.|.+++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~  130 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA---DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLF  130 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT---TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            356788999999999999999999999988765443   4999999999999999999999998876 788999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..|+.+++++|++.+++ ++. +..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999999998 665 44599999999999 8889999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhh
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATV  222 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~  222 (301)
                      |++.      |++++. |..|+||||+|+..       +|+++     .+|.+|+||+|+|+.
T Consensus       209 Ll~~------ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          209 LLES------GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HHHT------TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             HHHC------CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence            9996      889984 99999999999988       67766     789999999999974

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-37  Score=266.81  Aligned_cols=204  Identities=23%  Similarity=0.188  Sum_probs=178.2

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      .++..+.++|+.|+..|+.++|+.|++.|++++....   .|.||||+|+..|+.+++++|++.++++ +.+|..|.|||
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL  110 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPL  110 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence            3445678999999999999999999999998765443   4999999999999999999999999876 78899999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHH-HHHhCCcchhc---------------------
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYK-FLTACPKSILQ---------------------  148 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~-lL~~~~~~~~~---------------------  148 (301)
                      |+|+..|+.+++++|++.|++ ++..|..|.||||+|+.. ...+++ ++...+.+++.                     
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence            999999999999999999999 899999999999999988 444444 44455555543                     


Q ss_pred             -----cccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhC
Q 022200          149 -----VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNF  211 (301)
Q Consensus       149 -----~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~  211 (301)
                           .+..|.||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..       +|+++     .+|.
T Consensus       190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence                 456899999999999999999999986      999999999999999999998       67777     7899


Q ss_pred             CCCchhhhhhhhhhh
Q 022200          212 GGREGSSLATVEIAD  226 (301)
Q Consensus       212 ~g~tpl~~a~~~~~~  226 (301)
                      .|+||+|+|......
T Consensus       264 ~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          264 VGQTAFDVADEDILG  278 (299)
T ss_dssp             TSCCTTTSCCSGGGH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999765433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-38  Score=265.88  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=157.8

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhh-----cCCCCCChHHHHHHHcCCH-HHHHHHHHhCCchhhhcCCCC
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQI-----DQVPFVDTHLHIAASMGHV-NFALEIMRLKPSFARKQNQYG   87 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g   87 (301)
                      +.++.++|+.||+.|++++|+.||+.+.+.....     .....|.||||.|+..++. .++++|++.|.++ +.+|.+|
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G   86 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG   86 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence            3445689999999999999999999887643211     1122589999999988876 4788999998876 8889999


Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCH
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL  166 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~  166 (301)
                      +||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+.. ...++++|++.|++++.+|..|+||||+|+..|+.
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999999 999999999999999999 88899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       167 ~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      +++++|+++      |++++.+|..|+||||+|+..       +|+++     .+|.+|+||||+|+..
T Consensus       166 ~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          166 ELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             GGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTT
T ss_pred             HHHHHHHHC------CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhC
Confidence            999999996      999999999999999999998       77777     8899999999999754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-36  Score=258.90  Aligned_cols=232  Identities=21%  Similarity=0.141  Sum_probs=184.1

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      ++.++|+.|++.|+.++++.|++.|++++...+.  .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            4678999999999999999999998887655333  4889999999999999999999988776 677888999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhcc----------ccCCCcHHHHHHHcC
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQV----------TIRKETALYVAAKND  164 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~----------d~~g~t~Lh~A~~~g  164 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..          +..|.||||+|+..|
T Consensus        81 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            99999999999999988 888899999999999988 788888888898888876          777889999999999


Q ss_pred             CHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-----------HHHhh-----hhhCCCCchhhhhhhhhhhhh
Q 022200          165 KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-----------KLEST-----VRNFGGREGSSLATVEIADYL  228 (301)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-----------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~  228 (301)
                      +.+++++|++.     .+++++.+|..|+||||+|+..           +|++.     .+|..|+||||+|+..... .
T Consensus       160 ~~~~v~~Ll~~-----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~  233 (285)
T 1wdy_A          160 HVEVLKILLDE-----MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL-G  233 (285)
T ss_dssp             CHHHHHHHHHT-----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH-H
T ss_pred             CHHHHHHHHHh-----cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH-H
Confidence            99999999873     3888888999999999998865           45555     6788899999998765322 1


Q ss_pred             hhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200          229 KRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL  263 (301)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l  263 (301)
                      ....++.+      .+......+..+.|++++|+.
T Consensus       234 ~v~~Ll~~------~g~~~~~~~~~g~t~l~~A~~  262 (285)
T 1wdy_A          234 LVQRLLEQ------EHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             HHHHHHHS------SSCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhc------cCCCccccCCCCCcHHHHHHH
Confidence            12222221      223334445667788888764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-36  Score=265.09  Aligned_cols=204  Identities=18%  Similarity=0.163  Sum_probs=182.3

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||+|+..|+.++|+.|++.|.+++....   .|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~  129 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK---GGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLH  129 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC---CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            356788999999999999999999999998765543   4999999999999999999999998877 778999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecC------------------------------------------------------
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQG------------------------------------------------------  118 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d------------------------------------------------------  118 (301)
                      +|+..|+.+++++|++.|++ ++..+                                                      
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  208 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP  208 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence            99999999999999999987 55443                                                      


Q ss_pred             CCCCchhHHHHhc----HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCc
Q 022200          119 REGVTPLHYVAEN----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSI  194 (301)
Q Consensus       119 ~~g~tpLh~A~~~----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~t  194 (301)
                      ..|.||||+|+..    ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|+|
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------ga~~n~~d~~g~t  282 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH------GAKMNALDSLGQT  282 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCC
Confidence            5567889988876    57899999999999999999999999999999999999999996      9999999999999


Q ss_pred             HHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhhh
Q 022200          195 LLHISISR-------KLEST-----VRNFGGREGSSLATVEIADY  227 (301)
Q Consensus       195 pLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~~  227 (301)
                      |||+|+..       +|+++     .+|..|+||+++|......+
T Consensus       283 ~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~  327 (351)
T 3utm_A          283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI  327 (351)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHH
Confidence            99999998       67777     88999999999996554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-36  Score=273.06  Aligned_cols=200  Identities=26%  Similarity=0.240  Sum_probs=154.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|+..|+.++|++|++.|.+++....   .|.||||+|+..|+.+++++|++.++++ +.++..|.||||
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~---~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   85 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLH   85 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS---CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHH
Confidence            456678888888888888888888888877654433   4788888888888888888888887766 677888888888


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..|+.+++++|++.|++ ++..+..|.||||+|+.. ..+++++|++.+++++..+..|.||||+|+..|+.+++++
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  164 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  164 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            88888888888888888888 788888888888888887 7777777777888877778888888888888888888888


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      |++.      +++++..|..|.||||+|+..       +|++.     ..+.+|.||+|+|+..
T Consensus       165 Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  222 (437)
T 1n11_A          165 LLER------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ  222 (437)
T ss_dssp             HHHT------TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT
T ss_pred             HHhC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence            8875      777788888888888888776       45544     4456677777777543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=257.86  Aligned_cols=236  Identities=14%  Similarity=0.062  Sum_probs=166.5

Q ss_pred             ccccccCCCHHHHHHHHhCCHHHHHHHHHcChhh--------hhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhh
Q 022200           10 HQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYL--------IDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR   81 (301)
Q Consensus        10 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~   81 (301)
                      ++.+...+.|+||+|+..|+.+.+..++..++..        .........|+||||+|+..|+.+++++|++.+.++ +
T Consensus         8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~   86 (285)
T 3d9h_A            8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-N   86 (285)
T ss_dssp             ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-C
T ss_pred             ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence            3455678999999999999998888877665431        011112236999999999999999999999998876 7


Q ss_pred             hcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200           82 KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVA  160 (301)
Q Consensus        82 ~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A  160 (301)
                      .+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.. ..|.||||+|
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A  164 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEA  164 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHH
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHH
Confidence            8899999999999999999999999999999 999999999999999999 888999999999998864 4599999999


Q ss_pred             HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh----hhhCCCCchhhhhhhhhhhhhh
Q 022200          161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST----VRNFGGREGSSLATVEIADYLK  229 (301)
Q Consensus       161 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~----~~n~~g~tpl~~a~~~~~~~~~  229 (301)
                      +..|+.+++++|+++      |++++.+|..|+||||+|+..       +|++.    ..|..|.||||+|+..... ..
T Consensus       165 ~~~g~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~-~~  237 (285)
T 3d9h_A          165 ARRGHVECVNSLIAY------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASE-EL  237 (285)
T ss_dssp             HHHTCHHHHHHHHHT------TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCH-HH
T ss_pred             HHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH-HH
Confidence            999999999999996      999999999999999999988       66666    4578999999999765332 22


Q ss_pred             hhhhhhhhhhhhhhccccchhhhcchhHHHHHH
Q 022200          230 RGLIWRQKVLLFFYRSSLSITDENRNAPLVVAI  262 (301)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~  262 (301)
                      ...++.       .+......+..+.|++++|+
T Consensus       238 v~~Ll~-------~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          238 ACLLMD-------FGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHHH-------TTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHHH-------CCCCCCCcCCCCCCHHHHhc
Confidence            222222       23334444556666666653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.3e-36  Score=267.02  Aligned_cols=203  Identities=21%  Similarity=0.199  Sum_probs=180.0

Q ss_pred             cccccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC
Q 022200            9 QHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC   88 (301)
Q Consensus         9 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   88 (301)
                      .....+..+.||||+|+..|+.++|+.|++.|.+++....   .|.||||+|+..|+.+++++|++.+++.   .+..|.
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~   85 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR---FGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQ   85 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTB
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCC
Confidence            3444567789999999999999999999999988765443   5999999999999999999999999844   345899


Q ss_pred             cHHHHHHHCCCHHHHHHHhhc----CCcccee-----------------cCCCCCchhHHHHhc---HHHHHHHHHhCCc
Q 022200           89 SPLHLALQNSHTQMVLRLIDV----DRNLVRV-----------------QGREGVTPLHYVAEN---VDLLYKFLTACPK  144 (301)
Q Consensus        89 tpLh~A~~~~~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~---~~~~~~lL~~~~~  144 (301)
                      ||||+|+..|+.+++++|++.    +++ ++.                 +|..|.||||+|+..   ..+++++|++.|+
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            999999999999999999998    666 555                 888999999999987   5789999999999


Q ss_pred             chhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccc-----cccccCCCCcHHHHHHHH-------HHHhh-----
Q 022200          145 SILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-----INRKDDEGSILLHISISR-------KLEST-----  207 (301)
Q Consensus       145 ~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~-----~~~~d~~g~tpLh~A~~~-------~Ll~~-----  207 (301)
                      +++..|..|+||||+|+..|+.+++++|+++      +++     ++.+|..|+||||+|+..       +|+++     
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDT------VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhc------ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999997      777     999999999999999988       67776     


Q ss_pred             hhhCCCCchhhhhhhhh
Q 022200          208 VRNFGGREGSSLATVEI  224 (301)
Q Consensus       208 ~~n~~g~tpl~~a~~~~  224 (301)
                      .+|..|+||||+|+...
T Consensus       239 ~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          239 MEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             CCCTTSCCHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHhC
Confidence            78999999999997753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-35  Score=268.31  Aligned_cols=199  Identities=24%  Similarity=0.281  Sum_probs=160.4

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||.|++.|+.+++++|++.|++++....   .|+||||+|+..|+.+++++|+++++++ +..+..|.||||+
T Consensus        44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~  119 (437)
T 1n11_A           44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK---DDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHI  119 (437)
T ss_dssp             SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT---TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC---CCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence            45678899999999999999999998887654433   4889999999999999999999988776 6778888888888


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.+++ .+..+..|.||||+|+.. ...++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus       120 A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          120 AAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888888888887 777788888888888888 77788888888888888888888888888888888888888


Q ss_pred             HHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          173 LGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      ++.      +++++.++..|.||||+|+..       .|++.     ..+..|.||||+|+..
T Consensus       199 l~~------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  255 (437)
T 1n11_A          199 LPR------GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE  255 (437)
T ss_dssp             GGG------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HhC------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC
Confidence            875      777777777788888888776       45554     4566777777777553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-35  Score=249.59  Aligned_cols=200  Identities=18%  Similarity=0.138  Sum_probs=181.6

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||+|+..|+.++++.|++.|.++.....   .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~  111 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK---NGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFME  111 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHH
Confidence            45678999999999999999999999988765443   4999999999999999999999999876 7889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceec----------CCCCCchhHHHHhc-HHHHHHHHHhC-CcchhccccCCCcHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQ----------GREGVTPLHYVAEN-VDLLYKFLTAC-PKSILQVTIRKETALYVAA  161 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~-~~~~~~lL~~~-~~~~~~~d~~g~t~Lh~A~  161 (301)
                      |+..|+.+++++|++.|++ ++..          +..|.||||+|+.. ..+++++|++. |++++..|..|.||||+|+
T Consensus       112 A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          112 AAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            9999999999999999998 7766          78899999999999 77788888876 9999999999999999999


Q ss_pred             HcCC----HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHh-h-----hhhCCCCchhhhhhhhh
Q 022200          162 KNDK----LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLES-T-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       162 ~~g~----~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~-~-----~~n~~g~tpl~~a~~~~  224 (301)
                      ..++    .+++++|+++      |++++.+|..|+||||+|+..       +|++ .     .+|.+|+||+|+|+...
T Consensus       191 ~~~~~~~~~~i~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HccccchHHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            9999    8999999996      999999999999999999998       6776 3     78899999999997653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-35  Score=242.81  Aligned_cols=179  Identities=22%  Similarity=0.163  Sum_probs=168.1

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||+|++.|+.++++.|++.|.++.....   .|+||||+|+..|+.+++++|++.++...+.++..|.||||+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL   98 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence            56789999999999999999999999988765433   599999999999999999999999886668889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.+++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        99 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A           99 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL  177 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999 999999999999999999 88899999999999999999999999999999999999999


Q ss_pred             HHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          173 LGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +++      |++++.+|..|.||||+|+..
T Consensus       178 l~~------ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          178 LDH------FANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             HHT------TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHc------CCCCccccccCCCHHHHHHHh
Confidence            996      999999999999999999988

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.3e-35  Score=243.04  Aligned_cols=182  Identities=20%  Similarity=0.217  Sum_probs=163.1

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHc-ChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchh----hhcCCCCCcH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWE-DAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGCSP   90 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tp   90 (301)
                      .|.||||.|++.|+.++++.|++. |.+++....   .|+||||+|+..|+.+++++|++.+++..    +.+|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA---MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC---CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            478999999999999999999998 777655433   59999999999999999999999988753    4457799999


Q ss_pred             HHHHHHCCCHHHHHHHhhcCCccceecCC-------------CCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcH
Q 022200           91 LHLALQNSHTQMVLRLIDVDRNLVRVQGR-------------EGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETA  156 (301)
Q Consensus        91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~  156 (301)
                      ||+|+..|+.+++++|++.|++ ++.++.             .|.||||+|+.. ..+++++|++.|++++.+|..|+||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            9999999999999999999998 777665             799999999999 8899999999999999999999999


Q ss_pred             HHHHHHcCCHHHH----HHHHHhhhhcCccccc------ccccCCCCcHHHHHHHH-------HHHhh
Q 022200          157 LYVAAKNDKLKVL----KVMLGWLRYVNKDDII------NRKDDEGSILLHISISR-------KLEST  207 (301)
Q Consensus       157 Lh~A~~~g~~~~~----~~Ll~~~~~~~~~~~~------~~~d~~g~tpLh~A~~~-------~Ll~~  207 (301)
                      ||+|+..|+.+++    ++|+++      |+++      +.+|..|+||||+|+..       +|+++
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~------g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSY------DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHT------TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhc------CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999988    888886      7766      68999999999999988       56665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-35  Score=249.54  Aligned_cols=179  Identities=22%  Similarity=0.163  Sum_probs=169.5

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||+|++.|+.++|+.|++.|++++....   .|+||||+|+..|+.+++++|++.++...+.++..|.||||+
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  130 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL  130 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence            57789999999999999999999999998765543   499999999999999999999999986668889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus       131 A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L  209 (253)
T 1yyh_A          131 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL  209 (253)
T ss_dssp             HHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999 999999999999999999 88899999999999999999999999999999999999999


Q ss_pred             HHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          173 LGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +++      |++++.+|..|+||||+|+..
T Consensus       210 l~~------ga~~~~~d~~g~tpl~~A~~~  233 (253)
T 1yyh_A          210 LDH------FANRDITDHMDRLPRDIAQER  233 (253)
T ss_dssp             HHT------TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHc------CCCccccccCCCCHHHHHHHc
Confidence            997      999999999999999999988

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.6e-35  Score=256.44  Aligned_cols=200  Identities=19%  Similarity=0.157  Sum_probs=145.3

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch---------------
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF---------------   79 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------------   79 (301)
                      .+++|+||.||+.|++++|+.||+.|++++...+.  .|+||||+|+..|+.++|++|+++|+++               
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~--~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC--CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            44678999999999999999999999998765443  4899999999999999999999998754               


Q ss_pred             -----------------hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCcccee----------cCCCCCchhHHHHhc-
Q 022200           80 -----------------ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV----------QGREGVTPLHYVAEN-  131 (301)
Q Consensus        80 -----------------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~----------~d~~g~tpLh~A~~~-  131 (301)
                                       ++.+|..|.||||+|+..|+.+++++|++.|++ ++.          .+..|.||||+|+.. 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCC
Confidence                             234556677777777777777777777777766 433          234567777777776 


Q ss_pred             HHHHHHHHH-hCCcchhccccCCCcHHHHHHHcCC----HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH----
Q 022200          132 VDLLYKFLT-ACPKSILQVTIRKETALYVAAKNDK----LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR----  202 (301)
Q Consensus       132 ~~~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~----  202 (301)
                      ..+++++|+ +.|++++.+|..|.|++|.++..+.    ..++++|+++      |++++.+|..|+||||+|+..    
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~------gad~n~~d~~g~t~L~~a~~~~~~~  253 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLG  253 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT------TCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhhhhH
Confidence            555556555 4577777777777777776665433    3466666664      777777777777777777766    


Q ss_pred             ---HHHhh------hhhCCCCchhhhhhhh
Q 022200          203 ---KLEST------VRNFGGREGSSLATVE  223 (301)
Q Consensus       203 ---~Ll~~------~~n~~g~tpl~~a~~~  223 (301)
                         .|++.      .+|.+|+||||+|+..
T Consensus       254 ~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          254 LVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence               44432      5667777777777654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.2e-35  Score=231.15  Aligned_cols=158  Identities=28%  Similarity=0.317  Sum_probs=144.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ++|+.||+.|+.++|+.||+.|++++....   .|+||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~---~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDS---DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence            579999999999999999999999866544   5999999999999999999999999887 888999999999999999


Q ss_pred             CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 022200           99 HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLR  177 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~  177 (301)
                      +.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++  
T Consensus        82 ~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~--  158 (169)
T 4gpm_A           82 HKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ--  158 (169)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence            99999999999999 999999999999999999 88999999999999999999999999999999999999999996  


Q ss_pred             hcCccccccc
Q 022200          178 YVNKDDIINR  187 (301)
Q Consensus       178 ~~~~~~~~~~  187 (301)
                          |++++.
T Consensus       159 ----GA~ie~  164 (169)
T 4gpm_A          159 ----GGWLEH  164 (169)
T ss_dssp             ----------
T ss_pred             ----CCCcCC
Confidence                888764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.9e-35  Score=255.85  Aligned_cols=229  Identities=22%  Similarity=0.201  Sum_probs=191.8

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHc-ChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWE-DAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ..+.++|+.|++.|+.+.|+.|+.. +.+++.. +.  .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   97 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DG--RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-ST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHH
Confidence            4567899999999999999999976 4443333 22  5999999999999999999999999876 8889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc----------------------
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT----------------------  150 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d----------------------  150 (301)
                      |+..|+.+++++|++.|++ ++..|..|.||||+|+.. ..+++++|++.|++++..+                      
T Consensus        98 A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            9999999999999999999 999999999999999999 8889999999999887644                      


Q ss_pred             --------------------------------cCCCcHHHHHHHc---CCHHHHHHHHHhhhhcCcccccccccCCCCcH
Q 022200          151 --------------------------------IRKETALYVAAKN---DKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL  195 (301)
Q Consensus       151 --------------------------------~~g~t~Lh~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tp  195 (301)
                                                      ..|.||||+|+..   +..+++++|++.      |++++.+|..|+||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~  250 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK------GANVNEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT------TCCTTCCCTTCCCH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc------CCCcCCcCCCCCCH
Confidence                                            4577999999998   557899999996      99999999999999


Q ss_pred             HHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHH
Q 022200          196 LHISISR-------KLEST-----VRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAI  262 (301)
Q Consensus       196 Lh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~  262 (301)
                      ||+|+..       +|+++     .+|..|+||||+|+.... ......++.       .+......+..+.|++.+|.
T Consensus       251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll~-------~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH-LQTCRLLLS-------YGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHH-------TTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHH-------cCCCCCCcCCCCCChhhhhh
Confidence            9999998       67766     689999999999976532 222333333       34445555667778777763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.2e-35  Score=241.63  Aligned_cols=179  Identities=20%  Similarity=0.218  Sum_probs=168.0

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||+|+..|+.++++.|++.|.+++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus        36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  111 (231)
T 3aji_A           36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD---AGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLH  111 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC---CCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            357789999999999999999999999988755433   4999999999999999999999999876 778999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus       112 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          112 YAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999999999999999999 899999999999999999 8889999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+++      |++++.+|..|.||||+|+..
T Consensus       191 Ll~~------ga~~~~~~~~g~t~l~~A~~~  215 (231)
T 3aji_A          191 LVTQ------GASIYIENKEEKTPLQVAKGG  215 (231)
T ss_dssp             HHHT------TCCSCCCCTTSCCHHHHSCHH
T ss_pred             HHHC------CCCCCCCCCCCCCHHHHHHhh
Confidence            9996      999999999999999999876

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=241.57  Aligned_cols=201  Identities=19%  Similarity=0.203  Sum_probs=183.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      ++..+.++|+.|++.|+.++++.|++.|.++.....   .|.||||+|+..|+.+++++|++.++......+..|.||||
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK---ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC---CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            456678899999999999999999999988755433   59999999999999999999999999886676777999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC-HHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK-LKVLK  170 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~~~  170 (301)
                      +|+..|+.+++++|++.|++ ++.++..|.||||+|+.. ...++++|++.|++++..+..|.||||+|+..++ .++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence            99999999999999999999 899999999999999999 8889999999999999999999999999997766 89999


Q ss_pred             HHHHhhhhcCcccccccccC-CCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          171 VMLGWLRYVNKDDIINRKDD-EGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~-~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      +|++.      +++++..+. .|+||||+|+..       +|+++     .+|..|+||+++|...
T Consensus       161 ~L~~~------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          161 LLLTF------NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             HHHHT------TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHhc------CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            99986      999999997 999999999998       67776     7889999999999665

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.3e-35  Score=240.69  Aligned_cols=182  Identities=16%  Similarity=0.134  Sum_probs=164.9

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhC--CchhhhcCCCCCcH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK--PSFARKQNQYGCSP   90 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tp   90 (301)
                      .+..+.||||+|+..|+.++++.|++.+++..........|.||||+|+..|+.+++++|++.+  +++ +.++..|.||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~  110 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTC  110 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCH
Confidence            4577899999999999999999999999443222212235999999999999999999999997  554 7789999999


Q ss_pred             HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCCHHH
Q 022200           91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDKLKV  168 (301)
Q Consensus        91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~  168 (301)
                      ||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.| ++++.+|..|+||||+|+..|+.++
T Consensus       111 L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~  189 (228)
T 2dzn_A          111 LHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  189 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999 999999999999999999 888999999999 9999999999999999999999999


Q ss_pred             HHHHH-HhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          169 LKVML-GWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       169 ~~~Ll-~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +++|+ ++      |++++.+|..|.||||+|+..
T Consensus       190 v~~Ll~~~------ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          190 AVLLVEKY------GAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHHHHHH------CCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHHHHhc------CCCCCccCCCCCcHHHHHHHH
Confidence            99999 65      999999999999999999765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-36  Score=254.00  Aligned_cols=201  Identities=18%  Similarity=0.150  Sum_probs=173.9

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChh----hhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCC
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAY----LIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYG   87 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   87 (301)
                      ..+..|.||||+|+..|+.++++.|++.+..    ++.. +  ..|+||||+|+..|+.+++++|++.++++ +.+|..|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g   78 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-N--NLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRG   78 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-C--TTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-C--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence            4578899999999999999999999988764    3222 2  25999999999999999999999998876 7789999


Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCc-----cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhcccc-CCCcHHHHH
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRN-----LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTI-RKETALYVA  160 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~-~g~t~Lh~A  160 (301)
                      .||||+|+..|+.+++++|++.+++     .++..+..|.||||+|+.. ...++++|++.|++++.++. .|.||||+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999864     2577888999999999999 88899999999999999998 999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-------hhhCCCCchhhhhhh
Q 022200          161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-------VRNFGGREGSSLATV  222 (301)
Q Consensus       161 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-------~~n~~g~tpl~~a~~  222 (301)
                      +..|+.+++++|+++      |++++.+|..|+||||+|+..       +|+++       ..+.+|.||.+.+..
T Consensus       159 ~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             HHTTCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HHcCCHHHHHHHHHc------CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            999999999999996      999999999999999999987       66666       678899999998743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-34  Score=240.98  Aligned_cols=180  Identities=22%  Similarity=0.253  Sum_probs=168.3

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||+|+..|+.++++.|++.|.++.....   .|.||||+|+..|+.+++++|++.++...+.++..|.||||
T Consensus        40 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  116 (237)
T 3b7b_A           40 CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA---EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI  116 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT---TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC---CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHH
Confidence            356788999999999999999999999988655433   49999999999999999999999986666888999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++
T Consensus       117 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  195 (237)
T 3b7b_A          117 WATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL  195 (237)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH
Confidence            99999999999999999999 899999999999999999 8899999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+++      |++++.+|.+|+||||+|+..
T Consensus       196 Ll~~------gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          196 FLSR------DSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             HHTT------TCCTTCCCTTSCCHHHHSCTT
T ss_pred             HHHc------CCCCCccCCCCCCHHHHHHHH
Confidence            9986      999999999999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-35  Score=260.93  Aligned_cols=199  Identities=19%  Similarity=0.169  Sum_probs=179.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHH--------HcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC
Q 022200           15 SRTDQRLNEAAQAGNVDALYELI--------WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      ..+.||||+|+..|+.++++.|+        +.|.+++....   .|.||||+|+..|+.+++++|++.++++ +.+|..
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~---~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~  198 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKS  198 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC---CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCC
Confidence            56889999999999998887776        67877755433   5999999999999999999999999887 788999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcC---CccceecCCCCCchhHHHHhc----HHHHHHHHHhCCcchhc--------ccc
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVD---RNLVRVQGREGVTPLHYVAEN----VDLLYKFLTACPKSILQ--------VTI  151 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~----~~~~~~lL~~~~~~~~~--------~d~  151 (301)
                      |.||||+|+..|+.+++++|++.+   ++ ++..|..|.||||+|+..    ...++++|++.|++++.        .|.
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          199 ERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  277 (373)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc
Confidence            999999999999999999999988   56 889999999999999976    67899999999999886        577


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200          152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSL  219 (301)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~  219 (301)
                      .|.||||+|+..|+.+++++|++.     .+++++.+|..|+||||+|+..       +|+++     .+|..|+||+++
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~-----~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~  352 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL  352 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHH-----SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHh-----cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence            899999999999999999999985     2499999999999999999998       67776     789999999999


Q ss_pred             hhhh
Q 022200          220 ATVE  223 (301)
Q Consensus       220 a~~~  223 (301)
                      |+..
T Consensus       353 A~~~  356 (373)
T 2fo1_E          353 AQAN  356 (373)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.9e-34  Score=232.54  Aligned_cols=179  Identities=19%  Similarity=0.126  Sum_probs=162.6

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      +..+.++||.|+..|+.+.++.|++.++ +++.. +.  .|.||||+|+..|+.+++++|++.++++ +.++..|.||||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   77 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DT--EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYL   77 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            4568899999999999999999999887 54333 32  5999999999999999999999999877 788999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCC-----
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDK-----  165 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~-----  165 (301)
                      +|+..|+.+++++|++.+...++.+|..|.||||+|+.. ...++++|++.| ++++.+|..|+||||+|+..++     
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            999999999999999665544999999999999999999 888888888888 9999999999999999999998     


Q ss_pred             HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+++++|+++      |++++.+|..|+||||+|+..
T Consensus       158 ~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          158 QDIVKLLMEN------GADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             HHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHC------CCCCCccCCCCCCHHHHHHHc
Confidence            9999999996      999999999999999999988

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.9e-35  Score=240.43  Aligned_cols=188  Identities=20%  Similarity=0.219  Sum_probs=170.6

Q ss_pred             CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHh
Q 022200           28 GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI  107 (301)
Q Consensus        28 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  107 (301)
                      |+.+++++|++.|+++....+.  .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDR--TGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCC--CCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6788899999999988765444  5999999999999999999999998876 778999999999999999999999999


Q ss_pred             hcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccc
Q 022200          108 DVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN  186 (301)
Q Consensus       108 ~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  186 (301)
                      +.++..++.++..|.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++|+++      |++++
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~  152 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN------GANKD  152 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCTT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCC
Confidence            999855899999999999999999 88899999999999999999999999999999999999999996      99999


Q ss_pred             cccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          187 RKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       187 ~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      .+|..|+||||+|+..       +|+++     .+|..|+||+++|+...
T Consensus       153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhc
Confidence            9999999999999998       67766     77899999999997653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-34  Score=255.76  Aligned_cols=199  Identities=14%  Similarity=0.049  Sum_probs=179.9

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh----CCchhhh------
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----KPSFARK------   82 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~------   82 (301)
                      .+..+.||||+|+..|+.++|+.|++.|++...     ..|.||||+|+..|+.+++++|++.    +..+ +.      
T Consensus        49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~  122 (364)
T 3ljn_A           49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-----WHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECD  122 (364)
T ss_dssp             CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-----BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-----cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcc
Confidence            456789999999999999999999999995432     1499999999999999999999998    6655 44      


Q ss_pred             -----------cCCCCCcHHHHHHHCC--CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc---
Q 022200           83 -----------QNQYGCSPLHLALQNS--HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS---  145 (301)
Q Consensus        83 -----------~~~~g~tpLh~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~---  145 (301)
                                 +|..|.||||+|+..|  +.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++   
T Consensus       123 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  201 (364)
T 3ljn_A          123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS  201 (364)
T ss_dssp             CCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred             hHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence                       7889999999999999  99999999999999 999999999999999999 88999999999988   


Q ss_pred             --hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh---------
Q 022200          146 --ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST---------  207 (301)
Q Consensus       146 --~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~---------  207 (301)
                        ++..|..|+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..       +|+++         
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  275 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC  275 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTC
T ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcC
Confidence              999999999999999999999999999996      999999999999999999998       66665         


Q ss_pred             --------hhhCCCCchhhhhhhhh
Q 022200          208 --------VRNFGGREGSSLATVEI  224 (301)
Q Consensus       208 --------~~n~~g~tpl~~a~~~~  224 (301)
                              ..+..|.||++.|+...
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          276 PYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             TTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             cccCcccccccccccccchhhhhcc
Confidence                    26778899998886543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=251.89  Aligned_cols=178  Identities=19%  Similarity=0.173  Sum_probs=144.7

Q ss_pred             ccCCCHHHHHHHHhCCHH-HHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           14 KSRTDQRLNEAAQAGNVD-ALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      +..+.+||+.|+..++.+ +++.|++.|.+++....   +|+||||+|+..|+.+++++|++.++++ +.++..|.||+|
T Consensus        49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~---~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~  124 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ---DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLH  124 (269)
T ss_dssp             --------------------------CCCCTTCCCT---TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccc
Confidence            345778999999988765 78999999998865543   5999999999999999999999999877 778999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++..+..|+||||+|+..|+.+++++
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~  203 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL  203 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             cccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence            99999999999999999999 999999999999999999 8889999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          172 MLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+++      |++++.+|.+|+||||+|+++
T Consensus       204 Ll~~------Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          204 LLLH------GASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHHT------TCCSCCCCTTSCCSGGGSCTT
T ss_pred             HHHC------CCCCCCcCCCCCCHHHHHHhC
Confidence            9996      999999999999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.2e-34  Score=245.76  Aligned_cols=179  Identities=20%  Similarity=0.150  Sum_probs=152.7

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc---------------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS---------------   78 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---------------   78 (301)
                      +..+.||||+|+..|+.++++.|++.|+++.....   .|+||||+|+..|+.+++++|++.++.               
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  118 (282)
T 1oy3_D           42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (282)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT---TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence            46789999999999999999999999998765443   599999999999999999999997754               


Q ss_pred             -------------------------------hhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCC-CCCchhH
Q 022200           79 -------------------------------FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLH  126 (301)
Q Consensus        79 -------------------------------~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh  126 (301)
                                                     .++.++..|.||||+|+..|+.+++++|++.|++ ++.++. .|+||||
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLH  197 (282)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHH
T ss_pred             cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHH
Confidence                                           1356788999999999999999999999999999 888875 4999999


Q ss_pred             HHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          127 YVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       127 ~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|+.. ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|.|||++|...
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH------GAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT------TCCCCCCC-------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc------CCCcCcCCCcccccccccCCc
Confidence            99999 88999999999999999999999999999999999999999997      999999999999999999654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-33  Score=246.62  Aligned_cols=203  Identities=17%  Similarity=0.116  Sum_probs=176.1

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhh------------------------------cCCCCCChHHHHHHHcCC
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQI------------------------------DQVPFVDTHLHIAASMGH   65 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------------------~~~~~g~t~Lh~A~~~g~   65 (301)
                      .|.||||+|++.|+.++|+.||+.|+++....                              ..+..|.||||+|+..|+
T Consensus        58 ~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~  137 (337)
T 4g8k_A           58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  137 (337)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence            47899999999999999999999987653211                              122358999999999999


Q ss_pred             HHHHHHHHHhCCchh---------hhcCCCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc----
Q 022200           66 VNFALEIMRLKPSFA---------RKQNQYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN----  131 (301)
Q Consensus        66 ~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~----  131 (301)
                      .+++++|++.++++.         ...+..|.||||+|+..|+.+++++||+. |++ ++.+|..|.||||.++..    
T Consensus       138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~  216 (337)
T 4g8k_A          138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDS  216 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTT
T ss_pred             HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcc
Confidence            999999999987652         23456799999999999999999999975 788 999999999999988765    


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------H
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------K  203 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~  203 (301)
                       ...++++|++.|++++.+|..|+||||+|+..|+.+++++|++.     .+++++.+|.+|+||||+|++.       +
T Consensus       217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-----~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~  291 (337)
T 4g8k_A          217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVELKLKKIAEL  291 (337)
T ss_dssp             THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh-----cCCcccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence             56789999999999999999999999999999999999999974     4899999999999999999998       7


Q ss_pred             HHhhhhhCCCCchhhhhhhhh
Q 022200          204 LESTVRNFGGREGSSLATVEI  224 (301)
Q Consensus       204 Ll~~~~n~~g~tpl~~a~~~~  224 (301)
                      |+++--|.++++||++|+...
T Consensus       292 Ll~~GAd~n~~~~L~~A~~~~  312 (337)
T 4g8k_A          292 LCKRGASTDCGDLVMTARRNY  312 (337)
T ss_dssp             HHTTSCSSTTCCHHHHHHHTT
T ss_pred             HHHCCCCCCCCCHHHHHHHcC
Confidence            777755778889999997653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.5e-34  Score=237.88  Aligned_cols=180  Identities=16%  Similarity=0.124  Sum_probs=166.6

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc---hhhhcCCCCCc
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS---FARKQNQYGCS   89 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t   89 (301)
                      .+..+.||||+|+..|+.++++.|++.|.++.....   .|.||||+|+..|+.+++++|++.++.   ..+.++..|.|
T Consensus        42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  118 (241)
T 1k1a_A           42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT  118 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence            346688999999999999999999999988765533   599999999999999999999999872   34778899999


Q ss_pred             HHHHHHHCCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHH
Q 022200           90 PLHLALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLK  167 (301)
Q Consensus        90 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  167 (301)
                      |||+|+..|+.+++++|++.|++ ++..+ ..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  197 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP  197 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999 78888 8899999999999 889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          168 VLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       168 ~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++++|+++      |++++.+|..|+||||+|+..
T Consensus       198 ~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          198 LVRTLVRS------GADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             HHHHHHHT------TCCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHHHHhc------CCCCCCcCCCCCCHHHHHHhc
Confidence            99999996      999999999999999999877

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.5e-34  Score=241.78  Aligned_cols=177  Identities=19%  Similarity=0.227  Sum_probs=156.9

Q ss_pred             CCHHHHHHHHhCCHH----HHHHHHHcChhhhh---hhcCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhh-----
Q 022200           17 TDQRLNEAAQAGNVD----ALYELIWEDAYLID---QIDQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFAR-----   81 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~----~v~~Ll~~~~~~~~---~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~-----   81 (301)
                      |.||||.|++.|+.+    ++++|++.|.+++.   ..+.  .|+||||+|+..   |+.+++++|++.+++...     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~--~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS--TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT--TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC--CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            679999999999997    55666678888765   1222  599999999999   999999999999765421     


Q ss_pred             -----hcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCC-------------CCchhHHHHhc-HHHHHHHHHh-
Q 022200           82 -----KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-------------GVTPLHYVAEN-VDLLYKFLTA-  141 (301)
Q Consensus        82 -----~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~-~~~~~~lL~~-  141 (301)
                           .+|..|.||||+|+..|+.+++++|++.|++ ++.+|..             |.||||+|+.. ..+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 2347899999999999999999999999999 8888876             99999999999 8899999999 


Q ss_pred             --CCcchhccccCCCcHHHHHHH--cCCHH-------HHHHHHHhhhhcCccccc-------ccccCCCCcHHHHHHHH
Q 022200          142 --CPKSILQVTIRKETALYVAAK--NDKLK-------VLKVMLGWLRYVNKDDII-------NRKDDEGSILLHISISR  202 (301)
Q Consensus       142 --~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------~~~~Ll~~~~~~~~~~~~-------~~~d~~g~tpLh~A~~~  202 (301)
                        .|++++.+|..|+||||+|+.  .++.+       ++++|+++      |+++       +.+|..|+||||+|+..
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM------GARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc------CCCcccccccccccCCCCCCHHHHHHHh
Confidence              999999999999999999999  88888       99999997      8888       89999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.7e-34  Score=244.81  Aligned_cols=194  Identities=16%  Similarity=0.134  Sum_probs=161.6

Q ss_pred             cccccCCCHHHHHHHHhCCHHHHHHHHHcCh----hhhhhh-cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCch---
Q 022200           11 QKIKSRTDQRLNEAAQAGNVDALYELIWEDA----YLIDQI-DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSF---   79 (301)
Q Consensus        11 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~---   79 (301)
                      ...+..+.|+||.|++.|+.++|+.|++.+.    ++.... .....|+||||+|+..   |+.+++++|++.+++.   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            4467789999999999999999999998543    322110 1123599999999987   9999999999997542   


Q ss_pred             ---hhh----cCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCC--------------CCCchhHHHHhc-HHHHHH
Q 022200           80 ---ARK----QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR--------------EGVTPLHYVAEN-VDLLYK  137 (301)
Q Consensus        80 ---~~~----~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~-~~~~~~  137 (301)
                         ++.    +|..|.||||+|+..|+.+++++|++.|++ ++.++.              .|.||||+|+.. ..++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence               122    567899999999999999999999999999 888887              799999999999 888999


Q ss_pred             HHHh---CCcchhccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhcCcccccc-------cccCCCCcHHHH
Q 022200          138 FLTA---CPKSILQVTIRKETALYVAAKNDK---------LKVLKVMLGWLRYVNKDDIIN-------RKDDEGSILLHI  198 (301)
Q Consensus       138 lL~~---~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~~~~Ll~~~~~~~~~~~~~-------~~d~~g~tpLh~  198 (301)
                      +|++   .|++++.+|..|+||||+|+..|+         .+++++|+++      |++++       .+|..|+||||+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL------GAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh------hhhcccccccccccCCCCCCHHHH
Confidence            9999   999999999999999999999998         7999999997      88886       589999999999


Q ss_pred             HHHH-------HHHhh-hhhC
Q 022200          199 SISR-------KLEST-VRNF  211 (301)
Q Consensus       199 A~~~-------~Ll~~-~~n~  211 (301)
                      |+..       +|+++ .+|.
T Consensus       240 A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          240 AASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHTC--
T ss_pred             HHHhChHHHHHHHHHCCCCCc
Confidence            9988       66666 4343

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.3e-34  Score=243.26  Aligned_cols=176  Identities=14%  Similarity=0.104  Sum_probs=162.8

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|+..|+.++|+.|++.|++++..     +|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~  100 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-----ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALY  100 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC-----TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHH
Confidence            3567899999999999999999999999987554     3899999999999999999999999886 778999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCC-CchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREG-VTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK  170 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~  170 (301)
                      +|+..|+.+++++|++.|++ ++.+|..| .||||+|+.. ..+++++|++.|+++... ..|.||||+|+..|+.++++
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHH
Confidence            99999999999999999999 99999999 7999999999 889999999999876332 28999999999999999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcH-HHHHHHH
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSIL-LHISISR  202 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tp-Lh~A~~~  202 (301)
                      +|+++      |++++.+|..|+|| ||+|+..
T Consensus       179 ~Ll~~------gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          179 LLLDY------MTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             HHHHH------HHHTCTTCCCBCCTTHHHHHHH
T ss_pred             HHHHc------CCCCCcccCCCCChHHHHHHHc
Confidence            99997      99999999999998 9999998

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=228.86  Aligned_cols=179  Identities=24%  Similarity=0.267  Sum_probs=166.8

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.||||.|++.|+.++++.|++.+++.....+.  .|.||||+|+..|+.+++++|++.++++ +.++..|.||||+
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~  115 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD--LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHL  115 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT--TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC--cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            467889999999999999999999999987655443  4899999999999999999999998877 7789999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--HHHHHHHHHhCCcchhcccc-CCCcHHHHHHHcCCHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTI-RKETALYVAAKNDKLKVLK  170 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~~~  170 (301)
                      |+..|+.+++++|++.|++ ++.++..|.||||+|+..  ...++++|++.|++++..+. .|.||||+|+..|+.++++
T Consensus       116 A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          116 AAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999999999 999999999999999976  57899999999999999997 8999999999999999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|+++      |++++.+|..|+||||+|+..
T Consensus       195 ~Ll~~------g~~~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          195 LLLEA------GANVDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             HHHHH------TCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHc------CCCCCCcCCCCCCHHHHHHHc
Confidence            99997      999999999999999999988

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=9.8e-33  Score=218.95  Aligned_cols=169  Identities=18%  Similarity=0.112  Sum_probs=149.9

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      +.+|||.|+..|+.+.++.|++.++......+.  .|+||||+|+..|+.+++++|++.++++ +.++..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT--TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence            457999999999999999999999875554443  5999999999999999999999999876 7889999999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      .|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            9999999999999999 999999999999999999 88899999999999999999999999999999999999999997


Q ss_pred             hhhcCcccccccccCCCCcH
Q 022200          176 LRYVNKDDIINRKDDEGSIL  195 (301)
Q Consensus       176 ~~~~~~~~~~~~~d~~g~tp  195 (301)
                            ++++..++..|.||
T Consensus       158 ------~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ------ILKLFQSNLVPADP  171 (172)
T ss_dssp             ------HHHHSCC-------
T ss_pred             ------HHHHhcccCCCCCC
Confidence                  88888888888887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.1e-33  Score=237.40  Aligned_cols=187  Identities=19%  Similarity=0.158  Sum_probs=160.3

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHH----cChhhhhhhc-CCCCCChHHHHHH---HcCCHHHHHHHHHhCCch------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIW----EDAYLIDQID-QVPFVDTHLHIAA---SMGHVNFALEIMRLKPSF------   79 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~-~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~------   79 (301)
                      +..+.++||.|++.|+.+.++.|++    .+.++..... ....|+||||+|+   ..|+.+++++|++.+++.      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            3457899999999999996665555    7777654431 1125999999999   679999999999986432      


Q ss_pred             ----hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecC--------------CCCCchhHHHHhc-HHHHHHHHH
Q 022200           80 ----ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--------------REGVTPLHYVAEN-VDLLYKFLT  140 (301)
Q Consensus        80 ----~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~-~~~~~~lL~  140 (301)
                          .+..|..|.||||+|+..|+.+++++|++.|++ ++.++              ..|.||||+|+.. ..+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                233456899999999999999999999999999 88888              6899999999999 889999999


Q ss_pred             h---CCcchhccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhcCccccc-------ccccCCCCcHHHHHHH
Q 022200          141 A---CPKSILQVTIRKETALYVAAKNDK---------LKVLKVMLGWLRYVNKDDII-------NRKDDEGSILLHISIS  201 (301)
Q Consensus       141 ~---~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~~~~Ll~~~~~~~~~~~~-------~~~d~~g~tpLh~A~~  201 (301)
                      +   .|++++.+|..|+||||+|+..++         .+++++|+++      |+++       +.+|..|+||||+|+.
T Consensus       161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHHHHHHH
Confidence            9   999999999999999999999888         7999999997      8888       7799999999999998


Q ss_pred             H-------HHHhh
Q 022200          202 R-------KLEST  207 (301)
Q Consensus       202 ~-------~Ll~~  207 (301)
                      .       +|+++
T Consensus       235 ~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          235 TGKIGIFQHIIRR  247 (260)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHh
Confidence            8       66665

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.2e-32  Score=216.45  Aligned_cols=140  Identities=26%  Similarity=0.334  Sum_probs=135.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HH
Q 022200           55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VD  133 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~  133 (301)
                      ++|+.||+.|+.++|+.|++.|+++ +.+|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999887 88899999999999999999999999999999 999999999999999999 88


Q ss_pred             HHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          134 LLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       134 ~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|.+|+||||+|+..
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK------GADVNTSDSDGRTPLDLAREH  146 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999999999999996      999999999999999999987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.8e-32  Score=224.64  Aligned_cols=167  Identities=25%  Similarity=0.241  Sum_probs=149.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccc----eecCCCCCchhHH
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV----RVQGREGVTPLHY  127 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~  127 (301)
                      .|+||||+|+..|+.+++++|++..+..++.+|..|+||||+|+..|+.+++++|++.+++..    +.+|..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            389999999999999999999998334448889999999999999999999999999998822    6678899999999


Q ss_pred             HHhc-HHHHHHHHHhCCcchhcccc-------------CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCC
Q 022200          128 VAEN-VDLLYKFLTACPKSILQVTI-------------RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGS  193 (301)
Q Consensus       128 A~~~-~~~~~~lL~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~  193 (301)
                      |+.. ..+++++|++.|++++..+.             .|.||||+|+..|+.+++++|+++      |++++.+|..|+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~d~~g~  155 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH------GADIRAQDSLGN  155 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCCC
Confidence            9999 88999999999999998866             799999999999999999999996      999999999999


Q ss_pred             cHHHHHHHH-----------HHHhh-----------hhhCCCCchhhhhhhhh
Q 022200          194 ILLHISISR-----------KLEST-----------VRNFGGREGSSLATVEI  224 (301)
Q Consensus       194 tpLh~A~~~-----------~Ll~~-----------~~n~~g~tpl~~a~~~~  224 (301)
                      ||||+|+..           +|++.           .+|..|+||+|+|+...
T Consensus       156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            999999976           44443           35789999999997653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-32  Score=244.27  Aligned_cols=180  Identities=15%  Similarity=0.138  Sum_probs=162.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCC--chhhhcCCCCCcH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP--SFARKQNQYGCSP   90 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~tp   90 (301)
                      .+..+.||||+|+..|+.++|+.|++.|++++....   .|.||||+|+..|+.+++++|++.+.  ..++..|..|.||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK---SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  238 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC---CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence            356799999999999999999999999998765443   59999999999999999999999862  2337789999999


Q ss_pred             HHHHHHCC---CHHHHHHHhhcCCcccee--------cCCCCCchhHHHHhc-HHHHHHHHHhC-CcchhccccCCCcHH
Q 022200           91 LHLALQNS---HTQMVLRLIDVDRNLVRV--------QGREGVTPLHYVAEN-VDLLYKFLTAC-PKSILQVTIRKETAL  157 (301)
Q Consensus        91 Lh~A~~~~---~~~~v~~Ll~~~~~~~~~--------~d~~g~tpLh~A~~~-~~~~~~lL~~~-~~~~~~~d~~g~t~L  157 (301)
                      ||+|+..+   +.+++++|++.|++ ++.        .|..|.||||+|+.. ..+++++|++. |++++.+|..|+|||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            99999998   89999999999988 665        677999999999999 77778888765 499999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          158 YVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       158 h~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+|+..|+.+++++|+++      |++++.+|..|+||||+|+..
T Consensus       318 ~~A~~~g~~~iv~~Ll~~------gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQ------GASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHT------TCCSSCCCSSSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHc------CCCccCCCCCCCCHHHHHHHc
Confidence            999999999999999996      999999999999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-32  Score=240.90  Aligned_cols=170  Identities=10%  Similarity=0.084  Sum_probs=95.2

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCC---HHHHHHHHHhCCchhhhcCCCCCcH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGH---VNFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      +..|.||||+|+..|+.++|+.||+.|++++....   .|+||||+|+..|+   .++++.|++.+...++.+|..|+||
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~---~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  204 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  204 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence            44566666666666666666666666665543322   36666666666665   4555555555433345566666666


Q ss_pred             HHHHHH----CCCHHHHHHHhhc--------------------CCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcch
Q 022200           91 LHLALQ----NSHTQMVLRLIDV--------------------DRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSI  146 (301)
Q Consensus        91 Lh~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~  146 (301)
                      ||+|+.    .|+.+++++|++.                    +++ ++.+|..|.||||+|+.     +++|++.  ++
T Consensus       205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~-----~~~Ll~~--~~  276 (327)
T 1sw6_A          205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD-----LKWIIAN--ML  276 (327)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS-----HHHHHHH--TT
T ss_pred             HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH-----HHHHHHh--CC
Confidence            666666    5666666666655                    444 55666666666666654     3444443  45


Q ss_pred             hccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHH
Q 022200          147 LQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI  200 (301)
Q Consensus       147 ~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~  200 (301)
                      +.+|..|+||||+|+..|+.+++++|+++      |++++.+|.+|+||||+|+
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDY------GADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHH
Confidence            66666666666666666666666666664      6666666666666666664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-32  Score=235.87  Aligned_cols=180  Identities=18%  Similarity=0.129  Sum_probs=161.3

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||+|+..|+.++++.|++.|++++....   .|.||||+|+..|+.+++++|+++++++ +.++..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~  144 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---EGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLD  144 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHH
Confidence            356789999999999999999999999998765543   4999999999999999999999999876 778999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccc--------------------------eecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           93 LALQNSHTQMVLRLIDVDRNLV--------------------------RVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~--------------------------~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      +|+..++.+++++++......+                          ...+..|.||||+|+.. ...++++|++.|++
T Consensus       145 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d  224 (299)
T 1s70_B          145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (299)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            9999999999998776432212                          23567899999999999 88899999999999


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++.+|..|.||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..
T Consensus       225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          225 VNIKDYDGWTPLHAAAHWGKEEACRILVEN------LCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTTTSCCSG
T ss_pred             CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHH
Confidence            999999999999999999999999999996      999999999999999999766

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3e-31  Score=210.33  Aligned_cols=157  Identities=16%  Similarity=0.202  Sum_probs=141.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      +.||||.|+..|+.++++.|++.++...+.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            468999999999999999999999987799999999999999999999999999999999 999999999999999999 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KL  204 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~L  204 (301)
                      ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..       +|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR------GADLTTEADSGYTPMDLAVALGYRKVQQVI  154 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence            88999999999999999999999999999999999999999996      999999999999999999998       56


Q ss_pred             Hhh-----hhhCCCCch
Q 022200          205 EST-----VRNFGGREG  216 (301)
Q Consensus       205 l~~-----~~n~~g~tp  216 (301)
                      +++     .+|..|.||
T Consensus       155 ~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          155 ENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHSCC-------
T ss_pred             HHHHHHHhcccCCCCCC
Confidence            665     556666666

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6e-32  Score=230.92  Aligned_cols=178  Identities=18%  Similarity=0.181  Sum_probs=159.9

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhh-hhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLI-DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      ..+++|.|+..|+.+.++.+++.+.+.. +..+  ..|+||||+|+..|+.+++++|++.++..++.++..|.||||+|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d--~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIAD--SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            4467889999999999999998876632 2222  259999999999999999999999998566889999999999999


Q ss_pred             -----HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200           96 -----QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        96 -----~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~  169 (301)
                           ..++.+++++|++.|.. .+..|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                 55889999999999988 888999999999999999 88999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++|++.     .|++++.+|..|+||||+|+..
T Consensus       233 ~~Ll~~-----~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          233 GLLLAV-----PSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHTS-----TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHhc-----CCCCCcCcCCCCCCHHHHHHHc
Confidence            999982     3999999999999999999988

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.8e-31  Score=208.73  Aligned_cols=155  Identities=19%  Similarity=0.086  Sum_probs=142.2

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      .+.||||.|+..|+.++++.|++.+.+++....   .|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE---EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            477899999999999999999999887654433   5999999999999999999999998776 777999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999 899999999999999999 8889999999999999999999999999999999999999998


Q ss_pred             h
Q 022200          175 W  175 (301)
Q Consensus       175 ~  175 (301)
                      +
T Consensus       157 ~  157 (167)
T 3v31_A          157 H  157 (167)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.7e-31  Score=212.39  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=152.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      ++.||||.|+..|+.+.++.|+..++..++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            5899999999999999999999998866688899999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHH-hCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcc-cccccccCCCCcHHHHHHHH------
Q 022200          132 -VDLLYKFLT-ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKD-DIINRKDDEGSILLHISISR------  202 (301)
Q Consensus       132 -~~~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~-~~~~~~d~~g~tpLh~A~~~------  202 (301)
                       ..+++++|+ ..+.+++..|..|.||||+|+..|+.+++++|++.      + ++++.+|..|+||||+|+..      
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED------GREDIDFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH------CCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence             677777777 78889999999999999999999999999999996      6 89999999999999999942      


Q ss_pred             ------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          203 ------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       203 ------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                            +|++.     .+|..|+||+|+|+..
T Consensus       157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence                  66666     7899999999999765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.6e-31  Score=213.71  Aligned_cols=158  Identities=20%  Similarity=0.121  Sum_probs=123.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||+|+..|+.++++.|++.+.++.....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  106 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI---EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM  106 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc---cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            356677888888888888888888887776544332   4788888888888888888888887665 667778888888


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            88888888888888888877 777888888888888877 6777777778888888888888888888888888888888


Q ss_pred             HHHh
Q 022200          172 MLGW  175 (301)
Q Consensus       172 Ll~~  175 (301)
                      |+++
T Consensus       186 Ll~~  189 (192)
T 2rfm_A          186 FTEV  189 (192)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.2e-31  Score=227.42  Aligned_cols=184  Identities=15%  Similarity=0.021  Sum_probs=158.3

Q ss_pred             HHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHH
Q 022200           25 AQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL  104 (301)
Q Consensus        25 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~  104 (301)
                      ++..+.+.+..+|..+ +++.. +  ..|+||||+|+..|+.+++++|++.++++ +.+  +|.||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~-~~~~~-d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DTFKA-D--VHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TTTCC-C--TTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC-CCCcc-C--CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence            4456666677776654 33222 2  25999999999999999999999998776 444  5999999999999999999


Q ss_pred             HHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC-CcHHHHHHHcCCHHHHHHHHHhhhhcCcc
Q 022200          105 RLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK-ETALYVAAKNDKLKVLKVMLGWLRYVNKD  182 (301)
Q Consensus       105 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~  182 (301)
                      +|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++..+..| .||||+|+..|+.+++++|+++      +
T Consensus        80 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~------g  152 (285)
T 3kea_A           80 ILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE------I  152 (285)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT------S
T ss_pred             HHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC------C
Confidence            99999999 999999999999999999 8899999999999999999999 8999999999999999999986      6


Q ss_pred             cccccccC-CCCcHHHHHHHH-------HHHhh-----hhhCCCCch-hhhhhhhh
Q 022200          183 DIINRKDD-EGSILLHISISR-------KLEST-----VRNFGGREG-SSLATVEI  224 (301)
Q Consensus       183 ~~~~~~d~-~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tp-l~~a~~~~  224 (301)
                      ++.  .|. .|+||||+|+..       +|+++     .+|..|+|| ||+|+...
T Consensus       153 ~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          153 PST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             CTT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred             Ccc--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence            555  333 899999999988       67766     788999998 99997643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1e-30  Score=206.94  Aligned_cols=157  Identities=24%  Similarity=0.228  Sum_probs=143.1

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ...+.++|+.|++.|+.++|+.|++.|.+++....   .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   86 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA---SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL   86 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            34566799999999999999999999988755433   4999999999999999999999998876 7789999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            9999999999999999999 899999999999999999 88899999999999999999999999999999999999999


Q ss_pred             HHh
Q 022200          173 LGW  175 (301)
Q Consensus       173 l~~  175 (301)
                      +++
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=6.4e-32  Score=236.25  Aligned_cols=186  Identities=14%  Similarity=0.105  Sum_probs=148.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCC
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSH   99 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~   99 (301)
                      .+|.|+..+..++++.|++.|.+++...+.  .|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDE--HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence            357788888888899999999988763333  5999999999999999999999999887 7889999999999999998


Q ss_pred             ---HHHHHHHhhcCCccceecCCCCCchhHHHHh----c-HHHHHHHHHhC--------------------Ccchhcccc
Q 022200          100 ---TQMVLRLIDVDRNLVRVQGREGVTPLHYVAE----N-VDLLYKFLTAC--------------------PKSILQVTI  151 (301)
Q Consensus       100 ---~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~-~~~~~~lL~~~--------------------~~~~~~~d~  151 (301)
                         .++++.|++.+...++.+|..|+||||+|+.    . ...++++|++.                    |++++.++.
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence               7888888888743499999999999999998    5 66777777665                    889999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200          152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSL  219 (301)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~  219 (301)
                      .|.||||.|+.      +++|+++        +++.+|..|+||||+|+..       +|+++     .+|.+|+||||+
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  322 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF  322 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             cCCChhHHHHH------HHHHHHh--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            99999999986      8899874        5899999999999999998       77777     889999999999


Q ss_pred             hhh
Q 022200          220 ATV  222 (301)
Q Consensus       220 a~~  222 (301)
                      |+.
T Consensus       323 A~~  325 (327)
T 1sw6_A          323 GAG  325 (327)
T ss_dssp             TCC
T ss_pred             HHh
Confidence            964

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.5e-31  Score=222.95  Aligned_cols=178  Identities=16%  Similarity=0.080  Sum_probs=160.8

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc-----hhhhcCCCC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS-----FARKQNQYG   87 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g   87 (301)
                      .+..+.||||+|+..|+.++++.|++.|.++.....   .|.||||+|+..|+.+++++|++.++.     ..+..+..|
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  117 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  117 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCC
Confidence            346688999999999999999999999988765433   599999999999999999999999753     357788999


Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCccceecCC-CCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      .||||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+.. ...++++|++.|++++.+|..|.||||+|+..|+
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence            9999999999999999999999999 889887 999999999999 8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCcccccc--cccCCCCcHHHHHH
Q 022200          166 LKVLKVMLGWLRYVNKDDIIN--RKDDEGSILLHISI  200 (301)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~--~~d~~g~tpLh~A~  200 (301)
                      .+++++|+++      |++..  .++..|.||.+.+.
T Consensus       197 ~~~~~~Ll~~------ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          197 TRIQQQLGQL------TLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             HHHHHHHHTT------SCGGGSSCCCCCTTTCCCCC-
T ss_pred             hHHHHHHHHc------chhhhhcCCccchHHHHhhhc
Confidence            9999999997      77766  78899999876543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.1e-31  Score=207.34  Aligned_cols=155  Identities=20%  Similarity=0.254  Sum_probs=142.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      ....++||.|++.|+.++++.|++.|.+++....   .|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG---FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA   77 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc---cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            3467899999999999999999999988755433   59999999999 9999999999998876 78899999999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc-hhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS-ILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      +..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++ ++..|..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999999999 999999999999999999 88899999999987 699999999999999999999999999


Q ss_pred             HHh
Q 022200          173 LGW  175 (301)
Q Consensus       173 l~~  175 (301)
                      +++
T Consensus       157 l~~  159 (162)
T 1ihb_A          157 QAN  159 (162)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            996

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.8e-33  Score=232.66  Aligned_cols=185  Identities=15%  Similarity=0.055  Sum_probs=138.3

Q ss_pred             HHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCc
Q 022200           33 LYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN  112 (301)
Q Consensus        33 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~  112 (301)
                      ++.||+++.+..........|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            35677777766544444345778888888888888888888887765 67788888888888888888888888888888


Q ss_pred             cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHH--HHcCCHHHHHHHHHhhhhcCcccccccc
Q 022200          113 LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVA--AKNDKLKVLKVMLGWLRYVNKDDIINRK  188 (301)
Q Consensus       113 ~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  188 (301)
                       ++.+|..|+||||+|+.. ..+++++|++.|++++..+ ..|+||||+|  +..|+.+++++|++.      |++++.+
T Consensus        80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~------ga~~~~~  152 (229)
T 2vge_A           80 -VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV------EQSMGLM  152 (229)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH------HHHTTTS
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc------CCCcccc
Confidence             888888888888888888 7788888888888888876 5888888888  888888888888886      8888888


Q ss_pred             cCCCCcHHHHHHHH----HHHhh-------hhhCCCCchhhhhhhhhh
Q 022200          189 DDEGSILLHISISR----KLEST-------VRNFGGREGSSLATVEIA  225 (301)
Q Consensus       189 d~~g~tpLh~A~~~----~Ll~~-------~~n~~g~tpl~~a~~~~~  225 (301)
                      |..|.||+|.++..    .|++.       .+|.+|+||||+|+....
T Consensus       153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCC
Confidence            88888888855444    44444       567788999998866543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-30  Score=202.68  Aligned_cols=150  Identities=22%  Similarity=0.280  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      ..++|+.|++.|+.++++.|++.|++...    ...|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT----DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            35789999999999999999999886531    225899999999999999999999988776 7788999999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      .|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999998 899999999999999998 88899999999999999999999999999999999999886

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.8e-30  Score=208.52  Aligned_cols=143  Identities=20%  Similarity=0.218  Sum_probs=137.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Confidence            5999999999999999999999998776 77899999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++      |++++.+|..|.||||+|+..
T Consensus       112 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL------GADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHh
Confidence             88899999999999999999999999999999999999999996      999999999999999999887

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1e-30  Score=208.76  Aligned_cols=167  Identities=18%  Similarity=0.135  Sum_probs=143.5

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      +..++|+.|++.|+.+.|+.|++.++......+.  .|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD--HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            4567899999999999999999986543333333  5899999999999999999999998776 777899999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..++.+++++|++
T Consensus        81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 899999999999999998 8888999999999999999999999999999999999999998


Q ss_pred             hhhhcCcccccccccCCC
Q 022200          175 WLRYVNKDDIINRKDDEG  192 (301)
Q Consensus       175 ~~~~~~~~~~~~~~d~~g  192 (301)
                      +      |++++..+..+
T Consensus       160 ~------g~~~~~~~~~~  171 (179)
T 3f6q_A          160 M------GQNLNRIPYKD  171 (179)
T ss_dssp             T------TCCCSCBCCCC
T ss_pred             h------hcCcccCCccc
Confidence            6      88888766544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.4e-30  Score=202.60  Aligned_cols=143  Identities=15%  Similarity=0.218  Sum_probs=137.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            4899999999999999999999998765 88899999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ...++++|++.|++++..|..|.||||+|+..|+.+++++|+++      |++++.+|..|.||||+|+..
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES------GADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHc
Confidence             88899999999999999999999999999999999999999996      999999999999999999988

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=8.9e-31  Score=220.86  Aligned_cols=161  Identities=19%  Similarity=0.143  Sum_probs=144.8

Q ss_pred             cccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhhhh--------cCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhh
Q 022200           13 IKSRTDQRLNEAAQA---GNVDALYELIWEDAYLIDQI--------DQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR   81 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~   81 (301)
                      .+..+.||||+|+..   |+.++++.|++.|++.....        +....|.||||+|+..|+.+++++|++.++++ +
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-H  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-C
Confidence            356789999999999   99999999999998865322        11235999999999999999999999999876 6


Q ss_pred             hcCCC-------------CCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHh--c-HHH-------H
Q 022200           82 KQNQY-------------GCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAE--N-VDL-------L  135 (301)
Q Consensus        82 ~~~~~-------------g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~--~-~~~-------~  135 (301)
                      .++..             |.||||+|+..|+.+++++|++   .|++ ++.+|..|+||||+|+.  . ..+       +
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i  196 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHM  196 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence            66765             9999999999999999999999   8999 99999999999999998  4 555       9


Q ss_pred             HHHHHhCCcch-------hccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          136 YKFLTACPKSI-------LQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       136 ~~lL~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +++|++.|+++       +.+|..|+||||+|+..|+.+++++|+++
T Consensus       197 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            99999999999       99999999999999999999999999997

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.9e-30  Score=220.91  Aligned_cols=176  Identities=19%  Similarity=0.151  Sum_probs=143.6

Q ss_pred             ccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhh------h--hcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhh
Q 022200           14 KSRTDQRLNEAAQA---GNVDALYELIWEDAYLID------Q--IDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARK   82 (301)
Q Consensus        14 ~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~------~--~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~   82 (301)
                      +..+.||||+|+..   |+.++|+.|++.|++...      .  .+.+..|+||||+|+..|+.+++++|++.++++ +.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cc
Confidence            56799999999987   999999999999876321      1  112235999999999999999999999998877 66


Q ss_pred             cCC--------------CCCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHhc-H---------HHH
Q 022200           83 QNQ--------------YGCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAEN-V---------DLL  135 (301)
Q Consensus        83 ~~~--------------~g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~-~---------~~~  135 (301)
                      ++.              .|.||||+|+..|+.+++++|++   .|++ ++.+|..|+||||+|+.. .         .++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence            665              79999999999999999999999   8999 999999999999999985 3         688


Q ss_pred             HHHHHhCCcchh-------ccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCccc-ccccccCCCCcHHH
Q 022200          136 YKFLTACPKSIL-------QVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-IINRKDDEGSILLH  197 (301)
Q Consensus       136 ~~lL~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~-~~~~~d~~g~tpLh  197 (301)
                      +++|++.|++++       .+|..|+||||+|+..|+.+++++|+++      |+ ++......+.+|-|
T Consensus       209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~------ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR------EIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH------HTC--------------
T ss_pred             HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC------CCCCchhhhhhhhhccC
Confidence            999999999996       4899999999999999999999999997      77 78888777777654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.7e-30  Score=204.56  Aligned_cols=157  Identities=23%  Similarity=0.236  Sum_probs=137.7

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ++++.++|+.|++.|+.+.++.|++.++......+  ..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   81 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE--GRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN   81 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc--cCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence            35577899999999999999999986553322222  25889999999999999999999998876 7789999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      |+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|.||||+|+. |+.+++++|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999999 899999999999999999 8889999999999999999999999999766 899999999


Q ss_pred             HHh
Q 022200          173 LGW  175 (301)
Q Consensus       173 l~~  175 (301)
                      ++.
T Consensus       160 ~~~  162 (165)
T 3twr_A          160 RGD  162 (165)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=2.9e-31  Score=221.87  Aligned_cols=184  Identities=18%  Similarity=0.162  Sum_probs=133.8

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      ..|.||||.|++.|+.+.++.|+++|.++...    +.|.||||.|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~----~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC----chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            45889999999999999999999999988643    25899999999999999999999999865 88899999999999


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCC-cHHHHH--HHcCCHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKE-TALYVA--AKNDKLKVLK  170 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~~~~  170 (301)
                      +..|+.+++++|++.|++ ++.+|..|+||||+|+.. ...++++|++.|++++..+..|. ||||+|  +..|+.++++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999999 999999999999999999 88999999999999999998877 999999  7889999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHHHHHHhhhhhCCCCchhhhhhh
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATV  222 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~~Ll~~~~n~~g~tpl~~a~~  222 (301)
                      +|+++      +++++..+..+.++++            +..+++|.+++..
T Consensus       157 ~Ll~~------~a~~~~~~~~~~~al~------------d~~~~~~~eLa~~  190 (239)
T 1ycs_B          157 FLYGV------QEKMGIMNKGVIYALW------------DYEPQNDDELPMK  190 (239)
T ss_dssp             HHHHH------HHHTTTTGGGEEEESS------------CBCCSSTTBCCBC
T ss_pred             HHHHh------hhcccccccceEEEEe------------ccCCCCCCccccc
Confidence            99997      8888777665555543            5666666666633

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9.2e-30  Score=198.43  Aligned_cols=152  Identities=23%  Similarity=0.341  Sum_probs=137.8

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      +.++|+.|++.|+.+.++.|++... +++.. +  ..|.||||+ +..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~--~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-N--RFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-C--TTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-C--CCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence            4689999999999999999999821 33332 2  259999999 9999999999999998876 788999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++. ++++.+|..|.||||+|+..|+.+++++|++
T Consensus        77 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999999999 999999999999999999 88889999988 9999999999999999999999999999997


Q ss_pred             h
Q 022200          175 W  175 (301)
Q Consensus       175 ~  175 (301)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.8e-29  Score=199.75  Aligned_cols=143  Identities=24%  Similarity=0.266  Sum_probs=137.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .+.++||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence            4789999999999999999999998876 78899999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ...++++|++.|++++..|..|.||||+|+..|+.+++++|+++      |++++.+|..|.||||+|+..
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN------GADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHh
Confidence             88999999999999999999999999999999999999999996      999999999999999999887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.7e-32  Score=223.67  Aligned_cols=175  Identities=14%  Similarity=0.082  Sum_probs=154.3

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      +..+.++||.|+..|+.++|+.|++.|++++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~   93 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE---EGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC   93 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence            34566799999999999999999999998765433   5999999999999999999999998876 8889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecC-CCCCchhHHH--Hhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYV--AEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~  169 (301)
                      |+..|+.+++++|++.|++ ++.++ ..|+||||+|  +.. ..+++++|++.|++++..|..|.||++.++.....   
T Consensus        94 A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---  169 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---  169 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---
T ss_pred             HHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---
Confidence            9999999999999999999 78876 6999999999  777 89999999999999999999999999966555433   


Q ss_pred             HHHHHhhhhcCcccc--cccccCCCCcHHHHHHHH
Q 022200          170 KVMLGWLRYVNKDDI--INRKDDEGSILLHISISR  202 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~--~~~~d~~g~tpLh~A~~~  202 (301)
                      ++|++.      |++  ++.+|.+|+||||+|+..
T Consensus       170 ~~ll~~------ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          170 ELSFRE------GESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             BCCBCT------TCEEEEEESSCTTCSSEEEEEET
T ss_pred             ccCccc------cccccccccCCCcccHHHHHHHc
Confidence            455654      777  778999999999999776

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.8e-29  Score=195.29  Aligned_cols=141  Identities=22%  Similarity=0.251  Sum_probs=134.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      ..|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            468999999999999999999998865 3 588999999999999999999999999999 899999999999999999 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY------GADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHc
Confidence            88899999999999999999999999999999999999999996      999999999999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=8.1e-30  Score=215.38  Aligned_cols=159  Identities=21%  Similarity=0.198  Sum_probs=141.3

Q ss_pred             cCCCHHHHHHH---HhCCHHHHHHHHHcChhhhhh--------hcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhc
Q 022200           15 SRTDQRLNEAA---QAGNVDALYELIWEDAYLIDQ--------IDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ   83 (301)
Q Consensus        15 ~~~~~~L~~A~---~~g~~~~v~~Ll~~~~~~~~~--------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~   83 (301)
                      ..+.||||+|+   +.|+.++++.|++.|.+....        ...+..|+||||+|+..|+.+++++|++.++++ +.+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Ccc
Confidence            66999999999   779999999999998764221        111125999999999999999999999999877 666


Q ss_pred             C--------------CCCCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHhc-H---------HHHH
Q 022200           84 N--------------QYGCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAEN-V---------DLLY  136 (301)
Q Consensus        84 ~--------------~~g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~-~---------~~~~  136 (301)
                      +              ..|.||||+|+..|+.+++++|++   .|++ ++.+|..|+||||+|+.. .         .+++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            6              689999999999999999999999   8999 999999999999999964 2         5899


Q ss_pred             HHHHhCCcch-------hccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          137 KFLTACPKSI-------LQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       137 ~lL~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      ++|++.|+++       +.+|..|+||||+|+..|+.+++++|+++
T Consensus       202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999       77999999999999999999999999996

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.1e-29  Score=201.14  Aligned_cols=144  Identities=17%  Similarity=0.129  Sum_probs=135.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      ++.++||.|+..|+.+++++|++.++..++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            4789999999999999999999997777789999999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ..+++++|++.|++++..|..|.||||+|+..|+.+++++|+++      |++++.+|..|.||||+|+..
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN------GALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCSSBCCTTSCCGGGGSCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCcchhccCCCCcHHHHHHH
Confidence             88999999999999999999999999999999999999999996      999999999999999999877

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=214.97  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=145.0

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHH-----HcCCHHHHHHHHHhCCchhhhcCCC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAA-----SMGHVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      .+..|.||||+|+..|+.++|+.|++.|+ +++.. +.  .|+||||+|+     ..++.++++.|++.+... +..+..
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~--~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~  182 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NR--AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQA  182 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CT--TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTT
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CC--CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCC
Confidence            35779999999999999999999999998 54433 32  5999999999     668899999999998655 677889


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHh-CCcchhccccCCCcHHHHHHHcC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTA-CPKSILQVTIRKETALYVAAKND  164 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~-~~~~~~~~d~~g~t~Lh~A~~~g  164 (301)
                      |.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ...++++|++ .|++++.+|..|+||||+|+..|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999 999999999999999999 8888999998 89999999999999999999999


Q ss_pred             CHHHHHHHHHh
Q 022200          165 KLKVLKVMLGW  175 (301)
Q Consensus       165 ~~~~~~~Ll~~  175 (301)
                      +.+++++|+++
T Consensus       262 ~~~iv~~Ll~~  272 (276)
T 4hbd_A          262 QSEIASMLYSR  272 (276)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhc
Confidence            99999999985

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.6e-29  Score=196.98  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=134.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      ..||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|++.|++ ++.+|..|.||||+|+.. 
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            679999999999999999999998776 7889999999999999 999999999999999 999999999999999999 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccc-cccccCCCCcHHHHHHHH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-INRKDDEGSILLHISISR  202 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~d~~g~tpLh~A~~~  202 (301)
                      ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      +++ ++.+|..|.||||+|+..
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH------TASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------SCCCTTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------cCCCCCCcCCCCCcHHHHHHHc
Confidence            88899999999999999999999999999999999999999997      776 689999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.1e-29  Score=199.94  Aligned_cols=144  Identities=21%  Similarity=0.250  Sum_probs=135.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      +|.||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHc
Confidence            4889999999999999999999987766677888999999999999999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~a~~~  151 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH------GADPTKKNRDGNTPLDLVKDG  151 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTGGGSCTT
T ss_pred             CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcccCCCCCChhHhHhcC
Confidence             88899999999999999999999999999999999999999996      999999999999999887554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.7e-29  Score=201.87  Aligned_cols=153  Identities=13%  Similarity=0.113  Sum_probs=138.0

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCH----HHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHV----NFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      +.++|+.|++.|+.+.++.++..+.+....  .  .|+||||+|+..|+.    +++++|++.|+++ +.+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~--~--~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKES--V--LKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHHH--H--HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccccc--c--CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            457899999999999999999888654331  1  399999999999985    5899999999887 888999999999


Q ss_pred             HHHHCCC------HHHHHHHhhcCCccceecCCCCC-chhHHHHhc------HHHHHHHHHh-CCcchhccccCCCcHHH
Q 022200           93 LALQNSH------TQMVLRLIDVDRNLVRVQGREGV-TPLHYVAEN------VDLLYKFLTA-CPKSILQVTIRKETALY  158 (301)
Q Consensus        93 ~A~~~~~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~------~~~~~~lL~~-~~~~~~~~d~~g~t~Lh  158 (301)
                      +|+..++      .+++++|++.|++ ++.+|..|+ ||||+|+..      ...++++|++ .|++++.+|..|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999887      6889999999999 999999999 999999983      4578899999 99999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHh
Q 022200          159 VAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       159 ~A~~~g~~~~~~~Ll~~  175 (301)
                      +|++.|+.+++++|+++
T Consensus       160 ~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHTTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=6.5e-29  Score=193.61  Aligned_cols=141  Identities=18%  Similarity=0.257  Sum_probs=132.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      +.||||.|+..|+.+++++|++..+...+.+|..|.||||+ +..|+.+++++|++.|++ ++.+|..|.||||+|+.. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            57999999999999999999999544558889999999999 999999999999999999 999999999999999999 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|++       .++++.+|..|.||||+|+..
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~~~~~~~~~~g~t~l~~A~~~  143 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHS
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-------ccCCCCcCCCCCCHHHHHHHc
Confidence            8889999999999999999999999999999999999999998       378999999999999999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3.2e-28  Score=189.95  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=112.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCc-hhHHHHh
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT-PLHYVAE  130 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~A~~  130 (301)
                      .|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+ .|+.+++++|++.|++ ++.+|..|+| |||+|+.
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHH
Confidence            4899999999999999999999988766 778899999999985 8999999999999998 8999999999 9999999


Q ss_pred             c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHH
Q 022200          131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS  199 (301)
Q Consensus       131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A  199 (301)
                      . ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|.||.+.+
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA------AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC------C-----------------
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc------CCCCCccCcCcCcccccC
Confidence            8 88888999999999999999999999999999999999999986      999999999999988754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.8e-28  Score=217.49  Aligned_cols=151  Identities=19%  Similarity=0.111  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--hhhcCCCCCcHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--ARKQNQYGCSPLHL   93 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~   93 (301)
                      .+.||||.|++.|+.++|+.|++.|.........+..|.||||+|+..|+.++|++|++++++.  .+..+.+ .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            4569999999999999999999998722111111113789999999999999999999999742  1222223 999999


Q ss_pred             HHHCCCHHHHHHHhhcCCcccee--cCCCCCchhHHHH-hc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRV--QGREGVTPLHYVA-EN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~  169 (301)
                      |+..|+.+++++|++.|++ ++.  .|..|.||||+|+ .. ..+++++|++.|++       |.||||+|+..|+.+++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHH
T ss_pred             HHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHH
Confidence            9999999999999999998 776  8889999999999 88 88999999987743       88999999999999999


Q ss_pred             HHHHHh
Q 022200          170 KVMLGW  175 (301)
Q Consensus       170 ~~Ll~~  175 (301)
                      ++|++.
T Consensus       242 ~lL~~~  247 (376)
T 2aja_A          242 PFIARH  247 (376)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.9e-27  Score=179.53  Aligned_cols=121  Identities=13%  Similarity=0.124  Sum_probs=114.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCC-CCchhHHHHh
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLHYVAE  130 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~  130 (301)
                      .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|++.|++ ++.+|.. |.||||+|+.
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHH
Confidence            5999999999999999999999998776 7889999999999999 999999999999999 8999999 9999999999


Q ss_pred             c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      . ..+++++|++.|++++.+|..|+||||+|+..++.+++++|+++
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9 88899999999999999999999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2e-27  Score=198.52  Aligned_cols=157  Identities=15%  Similarity=0.046  Sum_probs=111.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .|.||||.|+..|+.+.++.|+++|.++ +. +..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            3899999999999999999999999876 43 47889999999999999999999999998 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCC-cHHHHH--HHH-----
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGS-ILLHIS--ISR-----  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~-tpLh~A--~~~-----  202 (301)
                       ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++      |++++.+|..|. ||||+|  +..     
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~~~~g~~~~  154 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQC  154 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcceecCCCCcchHHHHHHhhhccHHH
Confidence             88899999999999999999999999999999999999999996      999999998887 999999  333     


Q ss_pred             --HHHhh-----hhhCCCCchh
Q 022200          203 --KLEST-----VRNFGGREGS  217 (301)
Q Consensus       203 --~Ll~~-----~~n~~g~tpl  217 (301)
                        +|++.     ..+..+.+++
T Consensus       155 ~~~Ll~~~a~~~~~~~~~~~al  176 (239)
T 1ycs_B          155 SQFLYGVQEKMGIMNKGVIYAL  176 (239)
T ss_dssp             HHHHHHHHHHTTTTGGGEEEES
T ss_pred             HHHHHHhhhcccccccceEEEE
Confidence              66666     3444444444

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.2e-27  Score=190.67  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=126.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCH----HHHHHHhhcCCccceecCCCCCchhHHH
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHT----QMVLRLIDVDRNLVRVQGREGVTPLHYV  128 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  128 (301)
                      ++++|+.|++.|+.+.++.++..+.+.  ..+..|+||||+|+..|+.    +++++|++.|++ ++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence            578999999999999999999887543  2236799999999999975    599999999999 999999999999999


Q ss_pred             Hhc-H------HHHHHHHHhCCcchhccccCCC-cHHHHHHHcCC-----HHHHHHHHH-hhhhcCcccccccccCCCCc
Q 022200          129 AEN-V------DLLYKFLTACPKSILQVTIRKE-TALYVAAKNDK-----LKVLKVMLG-WLRYVNKDDIINRKDDEGSI  194 (301)
Q Consensus       129 ~~~-~------~~~~~lL~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~~~~~Ll~-~~~~~~~~~~~~~~d~~g~t  194 (301)
                      +.. .      .+++++|++.|++++.+|..|+ ||||+|+..+.     .+++++|++ +      |++++.+|..|+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~T  156 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS------GLQLLIKDKWGLT  156 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST------TCCTTCCCTTSCC
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc------CCCCcccCCCCCC
Confidence            986 2      5789999999999999999999 99999999553     569999998 6      9999999999999


Q ss_pred             HHHHHHHH
Q 022200          195 LLHISISR  202 (301)
Q Consensus       195 pLh~A~~~  202 (301)
                      |||+|+..
T Consensus       157 pL~~A~~~  164 (186)
T 3t8k_A          157 ALEFVKRC  164 (186)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHc
Confidence            99999887

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=7.8e-27  Score=182.07  Aligned_cols=141  Identities=15%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCc-HHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCS-PLH   92 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pLh   92 (301)
                      ...+.||||+|++.|+.++|+.|++.|.+++....   .|+||||+|+ .|+.+++++|++.+.++ +.+|..|.| |||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~   83 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNS---YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH   83 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence            46688999999999999999999999988765543   5999999985 99999999999998876 888999999 999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVA  160 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A  160 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++++.++..|.||.+-+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999 999999999999999999 88999999999999999999999998743

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.4e-25  Score=167.76  Aligned_cols=121  Identities=30%  Similarity=0.430  Sum_probs=112.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |+||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. 
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcC
Confidence            889999999999999999999998776 77788999999999999999999999999998 889999999999999998 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            88889999999999999999999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7.7e-26  Score=172.29  Aligned_cols=122  Identities=20%  Similarity=0.203  Sum_probs=113.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .+.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHc
Confidence            4789999999999999999999998776 77899999999999999999999999999998 899999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                       ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence             88899999999999999999999999999999999999999974

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=8.1e-26  Score=172.18  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=116.7

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC-CCcHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY-GCSPL   91 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL   91 (301)
                      .+..+.||||.|++.|+.++++.|++.|.+++....   .|+||||+|+. |+.+++++|++.++++ +.+|.. |.|||
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR---FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC---CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            456789999999999999999999999988765543   59999999999 9999999999999886 778888 99999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      |+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999 999999999999999999 88899999988764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.5e-25  Score=186.42  Aligned_cols=141  Identities=20%  Similarity=0.224  Sum_probs=124.7

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcC-CCCCcHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQN-QYGCSPL   91 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL   91 (301)
                      ++.++.||||.|++.|+.++++.|++ +.+++....   .|+||||+|+..|+.+++++|+++++++ +.++ ..|.|||
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L  115 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT---TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHH
Confidence            44578899999999999999999999 777655433   5999999999999999999999999887 5556 8899999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      |+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..                .....+.||||+|+..|+.+++++
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~----------------~~~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI----------------LKTTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH----------------HTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHH----------------HhccCCCCHHHHHHHcChHHHHHH
Confidence            999999999999999999999 999999999999999753                122568999999999999999999


Q ss_pred             HHHh
Q 022200          172 MLGW  175 (301)
Q Consensus       172 Ll~~  175 (301)
                      |++.
T Consensus       179 L~~~  182 (244)
T 3ui2_A          179 LEGQ  182 (244)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9985

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=4.3e-25  Score=176.82  Aligned_cols=140  Identities=20%  Similarity=0.232  Sum_probs=123.9

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcC-CCCCcHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQN-QYGCSPL   91 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL   91 (301)
                      .+.++.||||.|++.|+.++++.|++ +.+++....   .|+||||+|+..|+.+++++|++.++++ +.++ ..|+|||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL  114 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHH
Confidence            34578899999999999999999999 777655433   5999999999999999999999999887 5566 8999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV  171 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~  171 (301)
                      |+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..                .....+.++|++|+..|+.+++++
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~----------------~~~~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI----------------LKTTPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH----------------HHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHh----------------ccCcccccHHHHHHHcCHHHHHHH
Confidence            999999999999999999999 999999999999999864                011457899999999999999999


Q ss_pred             HHH
Q 022200          172 MLG  174 (301)
Q Consensus       172 Ll~  174 (301)
                      |.+
T Consensus       178 L~~  180 (183)
T 3deo_A          178 LEG  180 (183)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            976

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=2e-24  Score=164.37  Aligned_cols=125  Identities=24%  Similarity=0.277  Sum_probs=113.5

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      ...+.|+||+|++.|+.++++.|++.|.+++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE---YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence            35577899999999999999999999988765433   5999999999999999999999998876 7889999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP  143 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~  143 (301)
                      |+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999 999999999999999999 888899998765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.4e-24  Score=161.03  Aligned_cols=125  Identities=26%  Similarity=0.357  Sum_probs=115.3

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      +|.||||.|++.|+.++++.|++.+.++.....   .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence            478999999999999999999999988755433   4999999999999999999999998876 788999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999 899999999999999999 88999999998874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=187.37  Aligned_cols=136  Identities=21%  Similarity=0.152  Sum_probs=110.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCchhhh-----cCCCCCcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchh
Q 022200           54 DTHLHIAASMGHVNFALEIMRLKPSFARK-----QNQYGCSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPL  125 (301)
Q Consensus        54 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpL  125 (301)
                      .++|+.|+..|+.+.++.|+..++++...     .+..|.||||+|+..   |+.+++++|++.|++ ++.+|..|+|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCHH
Confidence            46789999999999998888888776322     578889999999987   888999999999888 888888999999


Q ss_pred             HHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          126 HYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       126 h~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++      +++      .|.||||+|+..
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~------ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA------QAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH------HHH------TTSSCCC-----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh------cCC------CCCChhHHHHhc
Confidence            999888 77888888888999999999999999999999999999999886      544      578888888754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.2e-24  Score=165.69  Aligned_cols=119  Identities=23%  Similarity=0.214  Sum_probs=63.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. 
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   87 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNG   87 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHcC
Confidence            555555555555555555555555443 44455555555555555555555555555555 555555555555555555 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      ..+++++|++.|++++.+|..|.||||+|+..+..+++++|.
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            444555555555555555555555555555544444444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=186.31  Aligned_cols=142  Identities=15%  Similarity=0.077  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      ..++|+.|+..|+++.++.|++.|++++...   .....|+||||+|+..   |+.+++++|+++++++ +.+|..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            3467999999999999999999999876521   0122599999999997   8999999999999876 8889999999


Q ss_pred             HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCH
Q 022200           91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL  166 (301)
Q Consensus        91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~  166 (301)
                      ||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++      .|.||||+|+..|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999999999999 999999999999999999 88899999988775      589999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.4e-24  Score=161.01  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. 
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence            444555555555555555555444433 44444455555555555555555555544444 444444444444444444 


Q ss_pred             HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200          132 VDLLYKFLTACPKSILQVTIRKETALYVA  160 (301)
Q Consensus       132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A  160 (301)
                      ..+++++|++.|++++.+|..|.||||+|
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            44444444444444444444444444444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.5e-25  Score=187.70  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      +.++++.++..|+.+.+..+...+.+.+.      .|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+.
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAADVVS------EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG   86 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHHHHH------HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHH
T ss_pred             CccHHHHHHHcCCCccccccccccccccc------CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHH
Confidence            44455555555655555444444444332      37899999999999999999998 6554 7788889999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                      .|+.+++++|++.|++ ++.++ ..|+||||+|+.. ...++++|++.|++++.+|..|.||||+|+..         . 
T Consensus        87 ~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------~-  155 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------L-  155 (244)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------H-
T ss_pred             CCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------H-
Confidence            9999999999999988 77777 7789999999888 78888888888999998899999999988751         1 


Q ss_pred             hhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          175 WLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       175 ~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                                   ....+.||||+|+..
T Consensus       156 -------------~~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          156 -------------KTTPKGNPMQFGRRI  170 (244)
T ss_dssp             -------------TTCCCSSHHHHHHHH
T ss_pred             -------------hccCCCCHHHHHHHc
Confidence                         124578899998887

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.3e-24  Score=179.31  Aligned_cols=133  Identities=23%  Similarity=0.224  Sum_probs=108.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHh
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAE  130 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~  130 (301)
                      .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. |++ ++.+|..|+||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHH
Confidence            4889999999999999999999988776 77899999999999999999999999998 777 89999999999999999


Q ss_pred             c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCC
Q 022200          131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG  192 (301)
Q Consensus       131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g  192 (301)
                      . ..+++++|++.|++++.+|..|.||||+|+..++.++++.|++.      ++..+..+.+|
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~------~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT------DAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc------chhhhccchhh
Confidence            8 88899999999999999999999999999999999999999885      77766665544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.6e-24  Score=163.84  Aligned_cols=127  Identities=20%  Similarity=0.207  Sum_probs=111.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..+.||||.|+..|+.++++.|++.|.+++....   .|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH---AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            357799999999999999999999999988755433   5999999999999999999999998876 788999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCc
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPK  144 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~  144 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++.++.+.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999 999999999999999988 7777777665443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=8e-24  Score=158.16  Aligned_cols=112  Identities=19%  Similarity=0.174  Sum_probs=104.5

Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHH
Q 022200           84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAK  162 (301)
Q Consensus        84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~  162 (301)
                      +..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.. ...++++|++.|++++.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            46788999999999999999999999998 999999999999999999 8889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          163 NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       163 ~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .|+.+++++|+++      |++++.+|..|+||||+|...
T Consensus        83 ~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           83 EGHVSCVKLLLSK------GADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCCCH
T ss_pred             cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHhCCH
Confidence            9999999999996      999999999999999998654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.5e-23  Score=165.66  Aligned_cols=126  Identities=19%  Similarity=0.193  Sum_probs=88.0

Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHH
Q 022200           84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAA  161 (301)
Q Consensus        84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~  161 (301)
                      +..|.||||+|+..|+.+++++|++ +++ ++.+|..|+||||+|+.. ...++++|++.|++++..+ ..|+||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3456677777777777777777776 665 666677777777777766 6666667777777777666 66777777777


Q ss_pred             HcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHHHHHhhhhhCCCCchhhhhhh
Q 022200          162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATV  222 (301)
Q Consensus       162 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~~Ll~~~~n~~g~tpl~~a~~  222 (301)
                      ..|+.+++++|+++      |++++.+|..|+||||+|+..     .....+.+|+++++.
T Consensus       119 ~~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~-----~~~~~~~~~l~~a~~  168 (183)
T 3deo_A          119 GYVRPEVVEALVEL------GADIEVEDERGLTALELAREI-----LKTTPKGNPMQFGRR  168 (183)
T ss_dssp             HTTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHH-----HHTCCCCSHHHHHHH
T ss_pred             hcCcHHHHHHHHHc------CCCCcCCCCCCCCHHHHHHHh-----ccCcccccHHHHHHH
Confidence            77777777777775      777777777777777777653     223456777777754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=1.1e-24  Score=193.16  Aligned_cols=165  Identities=14%  Similarity=0.034  Sum_probs=132.9

Q ss_pred             HHHHHHHH-hCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--hhhcCCCCCcHHHHHH
Q 022200           19 QRLNEAAQ-AGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--ARKQNQYGCSPLHLAL   95 (301)
Q Consensus        19 ~~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~   95 (301)
                      ++++.|.. .++.+.++.+++.|.+          ++||||+|+..|+.+++++|++.++..  ....+..|.||||+|+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            35666655 4777788888776653          569999999999999999999997622  1133556889999999


Q ss_pred             HCCCHHHHHHHhhcCCcc--ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhc--cccCCCcHHHHHH-HcCCHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNL--VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQ--VTIRKETALYVAA-KNDKLKVL  169 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~~  169 (301)
                      ..|+.++|++|++.|++.  .+..+.+ .||||+|+.. ..+++++|++.|++++.  .|..|.||||+|+ ..|+.+++
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            999999999999999741  1222222 9999999999 88999999999999888  8999999999999 99999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST  207 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~  207 (301)
                      ++|++.      |+       .|.||||+|+..       +|++.
T Consensus       216 ~~Ll~~------ga-------~~~taL~~Aa~~g~~evv~lL~~~  247 (376)
T 2aja_A          216 NFLLDC------PV-------MLAYAEIHEFEYGEKYVNPFIARH  247 (376)
T ss_dssp             HHHTTS------HH-------HHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHhC------CC-------ccchHHHHHHHCCCHHHHHHHHhc
Confidence            999985      43       289999999988       66666

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.1e-23  Score=173.75  Aligned_cols=135  Identities=19%  Similarity=0.134  Sum_probs=109.3

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh-CCchhhhcCCCCCcHHH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL-KPSFARKQNQYGCSPLH   92 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh   92 (301)
                      +..+.||||+|+..|+.++|+.|++.|.+++....   .|+||||+|+..|+.+++++|++. +.++ +.+|..|.||||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~  145 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK---AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALH  145 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCC---CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHH
Confidence            34678999999999999999999999988765433   599999999999999999999998 5554 888999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK  153 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g  153 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...+++.|+..+++.+..+..+
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999 999999999999999998 8889999999999887766554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.1e-22  Score=179.75  Aligned_cols=145  Identities=13%  Similarity=0.026  Sum_probs=114.8

Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHhCCchhhhcC--CCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHH
Q 022200           53 VDTHLHIAASM-GHVNFALEIMRLKPSFARKQN--QYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA  129 (301)
Q Consensus        53 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  129 (301)
                      +.|+||.|+.. |+.++++.|++.++++ +..+  ..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            56899999999 9999999999999877 6666  8999999999999999999999999999 9999999999999999


Q ss_pred             hc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          130 EN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       130 ~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .. ...++++|++.|++++.+|..|.||||+|+..|+.+++++|++....   .......+..+.|+++.+...
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~---~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR---EAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccCCCCCCHHHHHHHH
Confidence            99 88899999999999999999999999999999999999999986322   344444556677777665444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.9e-21  Score=165.84  Aligned_cols=162  Identities=17%  Similarity=0.042  Sum_probs=132.8

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChh-------hh-------------hhhcC---C-----CCCChHHHHHHHcC
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAY-------LI-------------DQIDQ---V-----PFVDTHLHIAASMG   64 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~-------~~-------------~~~~~---~-----~~g~t~Lh~A~~~g   64 (301)
                      .+..+.++|+.+...|+....+.+...-+.       ..             .....   .     ....++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            455677889999999997666555322110       00             00000   0     01247899999999


Q ss_pred             CHHHHHHHHHhCCch-----hhhcCCCCCcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHH
Q 022200           65 HVNFALEIMRLKPSF-----ARKQNQYGCSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLL  135 (301)
Q Consensus        65 ~~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~  135 (301)
                      +.+.++.++..+.++     ++..|..|.||||+|+..   |+.+++++|++.|++ ++.+|..|+||||+|+.. ..++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g~~~~  220 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAEC  220 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence            999999999998875     244488999999999999   899999999999999 999999999999999999 8889


Q ss_pred             HHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       136 ~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999997

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=5.9e-22  Score=146.07  Aligned_cols=107  Identities=25%  Similarity=0.303  Sum_probs=85.3

Q ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHH
Q 022200           83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAA  161 (301)
Q Consensus        83 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~  161 (301)
                      +|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            577788888888888888888888888877 777888888888888877 777778888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHhhhhcCcccccccccCCCCcHH
Q 022200          162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL  196 (301)
Q Consensus       162 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpL  196 (301)
                      ..|+.+++++|+++      |++++.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~------ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAK------GADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTT------SSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHc------CCCCCcCCccccccc
Confidence            88888888888875      888888888887773

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=2.7e-21  Score=137.01  Aligned_cols=88  Identities=33%  Similarity=0.470  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK  165 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (301)
                      |+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            45555555555555555555555555 555555555555555555 4455555555555555555566666666666666


Q ss_pred             HHHHHHHHHh
Q 022200          166 LKVLKVMLGW  175 (301)
Q Consensus       166 ~~~~~~Ll~~  175 (301)
                      .+++++|+++
T Consensus        81 ~~~~~~Ll~~   90 (93)
T 1n0q_A           81 LEVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            6666666653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=3.5e-21  Score=164.19  Aligned_cols=125  Identities=18%  Similarity=0.222  Sum_probs=112.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      ++|+.|++.|+++.++.+++.|.+++...   .....|+||||+|+..   |+.+++++|+++++++ +.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            58999999999999999999999865432   1122599999999999   8999999999999887 888999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      +|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999 999999999999999999 88899999988773

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=4.3e-21  Score=136.02  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      |.||||+|++.|+.++++.|++.|.+++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            44555555555555555555555554433222   2555555555555555555555555443 4445555555555555


Q ss_pred             CCCHHHHHHHhhcCC
Q 022200           97 NSHTQMVLRLIDVDR  111 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~  111 (301)
                      .|+.+++++|++.|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            555555555555544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=2.8e-21  Score=170.73  Aligned_cols=145  Identities=16%  Similarity=0.083  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHh-CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200           17 TDQRLNEAAQA-GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL   95 (301)
Q Consensus        17 ~~~~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~   95 (301)
                      +.++||.|+.. |++++++.|++.|++++.... ...|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~-~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCcccc-ccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            34699999999 999999999999998865431 125999999999999999999999999877 788999999999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCc---chhccccCCCcHHHHHHHcC
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPK---SILQVTIRKETALYVAAKND  164 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~---~~~~~d~~g~t~Lh~A~~~g  164 (301)
                      ..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|+..+.   +....+..+.|+++.+....
T Consensus       277 ~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          277 ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            99999999999999999 999999999999999999 7788888876553   33455667888888776543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=5.8e-21  Score=140.73  Aligned_cols=103  Identities=25%  Similarity=0.337  Sum_probs=76.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHC
Confidence            4777777777777777777777777664 66677777777777777777777777777777 777777777777777777


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETA  156 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~  156 (301)
                       ...++++|+++|++++..+..|.+|
T Consensus        86 ~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           86 GHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCHHHHHHHHHcCCCCCcCCcccccc
Confidence             6677777777777777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=1.7e-18  Score=126.46  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHH
Q 022200           84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAK  162 (301)
Q Consensus        84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~  162 (301)
                      |.+|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|++.|++++.+|..|+||||+|+.
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            44555555555555555555555555554 455555555555555555 4445555555555555555555555555555


Q ss_pred             cCCHHHHHHH
Q 022200          163 NDKLKVLKVM  172 (301)
Q Consensus       163 ~g~~~~~~~L  172 (301)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            5555555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.1e-17  Score=122.16  Aligned_cols=84  Identities=25%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-  131 (301)
                      |.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. 
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNG  101 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHHcC
Confidence            455555555555555555555554433 44455555555555555555555555555555 455555555555555554 


Q ss_pred             HHHHHHH
Q 022200          132 VDLLYKF  138 (301)
Q Consensus       132 ~~~~~~l  138 (301)
                      ..+++++
T Consensus       102 ~~~~~~~  108 (110)
T 2zgd_A          102 NEDLAEI  108 (110)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.94  E-value=6.4  Score=30.12  Aligned_cols=133  Identities=17%  Similarity=0.097  Sum_probs=88.7

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      .+.++.+-.|...|+++....+.+...+...       ....=..|...|+.++++....+-.+...        .+.+.
T Consensus         6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~-------Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--------L~~Ly   70 (177)
T 3mkq_B            6 QDPHIRFDLALEYGNLDAALDEAKKLNDSIT-------WERLIQEALAQGNASLAEMIYQTQHSFDK--------LSFLY   70 (177)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------HHHHH
T ss_pred             CChHHHHHHHHhcCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHcCChHHHHHHHHHhCCHHH--------HHHHH
Confidence            4456789999999999998887664321111       23344567789999999999988665522        24555


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      ...|+.+-++.+.+...     ...+....++.+...  .+.++++|.+.|--.        -+...|-.+|..++.+.+
T Consensus        71 ~~tg~~e~L~kla~iA~-----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~a~~~  137 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQ-----TREDFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAAASAF  137 (177)
T ss_dssp             HHHTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHH-----HCccHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHHHHHH
Confidence            55688887776654321     122233456665544  888999887764322        245677789999999999


Q ss_pred             HHh
Q 022200          173 LGW  175 (301)
Q Consensus       173 l~~  175 (301)
                      ++.
T Consensus       138 ~~~  140 (177)
T 3mkq_B          138 LEQ  140 (177)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 10/197 (5%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ A+  G++  +  L+   A   +  +    V+T LH+AA  GH   A  +++ K    
Sbjct: 4   LHVASFMGHLPIVKNLLQRGAS-PNVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKV- 59

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLT 140
             + +   +PLH A +  HT MV  L++ + N                 E        L 
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI 200
               S   +T +  T L+VAAK  K++V +++L       +D   N     G   LH+++
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLL------ERDAHPNAAGKNGLTPLHVAV 173

Query: 201 SRKLESTVRNFGGREGS 217
                  V+    R GS
Sbjct: 174 HHNNLDIVKLLLPRGGS 190

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
           T LH+AA  GH      ++  K +     N+ G +PLHL  Q  H  +   LI      V
Sbjct: 233 TPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-V 290

Query: 115 RVQGREGVTPLHYVAENVDLLY-KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
               R G TPLH  +   ++   KFL      +   T    + L+ AA+     ++ ++L
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 174 GWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
                       N    +G+  L I+      S   
Sbjct: 351 ------KNGASPNEVSSDGTTPLAIAKRLGYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 12/190 (6%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ A    N+D +  L+                 T LHIAA    V  A  +++     A
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSA 224

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFL 139
             ++  G +PLHLA Q  H +MV  L+   +    +  + G+TPLH VA+   + +   L
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS 199
                 +   T    T L+VA+    +K++K +L     VN       K   G   LH +
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA------KTKLGYSPLHQA 337

Query: 200 ISRKLESTVR 209
             +     V 
Sbjct: 338 AQQGHTDIVT 347

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+  AQ G+V     LI                 T LH+A+  G++    + +    +  
Sbjct: 268 LHLVAQEGHVPVADVLIKHGV---MVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADV 323

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLL 135
             + + G SPLH A Q  HT +V  L+    +       +G TPL            D+L
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 90  PLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQ 148
           PLH+A    H  +V  L+    +   V   +  TPLH  A      + K+L      +  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 149 VTIRKETALYVAAKNDKLKVLKVML 173
                +T L+ AA+     ++K++L
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLL 86

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 42/215 (19%)

Query: 17  TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK 76
           ++  +   A +G ++ L E I  D  L  + DQ     T LH A S GH      +++L 
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLG 60

Query: 77  PSFAR--------------------------------KQNQYGCSPLHLALQNSHTQMVL 104
                                                  NQ GC+PLH A   +  ++ +
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 105 RLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKN 163
            L++   N    +     T +H  A   +L +   L     S         T L++A   
Sbjct: 121 MLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 164 DKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI 198
           ++++  K+++      ++   I  ++ E    L +
Sbjct: 180 ERVEEAKLLV------SQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 10/212 (4%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
           +  +   A  G +    E +    S A + +Q   + LH A    HT++V  L+ +   +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 114 VRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
                          +   D + K L      +  V     T L+ AA  ++ ++  ++L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 174 GWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLKRGLI 233
                       + KD   +  +H + ++     +      + S+       +       
Sbjct: 124 ------EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 234 WRQKV----LLFFYRSSLSITDENRNAPLVVA 261
             ++V    LL    +S+ I ++    PL VA
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ AA     +    L+   A   D  D   +  T +H AA+ G++     ++    +  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGAN-PDAKDH--YEATAMHRAAAKGNLKMIHILLY-YKAST 162

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFL 139
             Q+  G +PLHLA      +    L+    + + ++ +E  TPL      + L+ K +
Sbjct: 163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAKGGLGLILKRM 220

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL-KPSF 79
           L +AA+ G+V+ L  L+ E    ++  D +        + +S      A+  + L   + 
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 80  ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
              + + G +PL LA++  H  +V RL++ +   +     +G T L    E 
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL----RLIDVD 110
           T L  AA  GHV     ++    +     +  G + L  AL +S    V      L+D  
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 111 RNLVRVQGREGVTPLHYVAE--NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKV 168
            + V V+G  G TPL    E  ++ L+ + L      I       +TAL +A +    K+
Sbjct: 210 AD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 169 LKVMLGWLRYVNKDDII 185
            +++       +  D++
Sbjct: 269 AELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 7/187 (3%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
           +  L  A     V+   +++    +   ++ + G +PLH A+Q S   +V  L+    + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 114 VRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
           V  +       L         L K   +    + +      TA   AA   K+K LK + 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 174 GWLRYVNKDD----IINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADYLK 229
                VN          R    G+  L  +  +     ++      G   A V   D + 
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG---ADVNACDNMG 182

Query: 230 RGLIWRQ 236
           R  +   
Sbjct: 183 RNALIHA 189

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 29/265 (10%)

Query: 18  DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
           +  L +A Q  +VD + +L+   A +  Q ++     T LH A  M   +    ++R   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 78  SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLL-- 135
               ++       L  A+  S   +  +L       V      G T     A    +   
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLL--KLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 136 ---------YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN 186
                            +   ++     TAL  AA+   ++VLK++L           +N
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD-----EMGADVN 176

Query: 187 RKDDEGSILLHISISRKLESTVRNFGGREGSSLATVEIADY---------LKRGLIWRQK 237
             D+ G   L  ++    +S V           A V +            +++  +   +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 238 VLLFFYRSSLSITDENRNAPLVVAI 262
            LL      ++ TD +    L++A+
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAV 261

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 5   CYTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMG 64
             T+ H  I +      + AA+      +  ++ +    I           +        
Sbjct: 177 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 236

Query: 65  HVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTP 124
            +   L++  +  +    Q+  G + L++A +  +  +V  L+D   +   +  + G+ P
Sbjct: 237 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRP 295

Query: 125 LHYVA 129
           + + A
Sbjct: 296 VDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 16/197 (8%), Positives = 52/197 (26%), Gaps = 24/197 (12%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALE-IMRLKPSF 79
           L+      N++ +  L+   +      D +        + +   + +   E ++      
Sbjct: 111 LHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 80  ARKQNQYGCSPLHLALQNSH------------TQMVLRLIDVDRNLVRVQGREGVTPLHY 127
              ++    + LH  +  S               ++  ++      ++    E  +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 128 VAENVDLLYKFLTACPKSILQV----TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
                             I  +        +T L +AA+   + ++  +L      +   
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL------DYGA 283

Query: 184 IINRKDDEGSILLHISI 200
                +  G   +    
Sbjct: 284 DPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 27/175 (15%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLA---LQNSHTQMVLRLID 108
           T LH   S+ +    LE+++      S     +  G S L  A   + N  +     L+D
Sbjct: 109 TPLHWLTSIAN----LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 109 VDRNLVRVQGREGVTPLHYVAENV--------------DLLYKFLTACPKSILQVTIRKE 154
                + ++     T LH++                   L+   +    + I   T  KE
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 155 TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
           +         K  +L+ +          +++N +D  G   L+I+      S V 
Sbjct: 225 SKPNDKNGERKDSILENLD---LKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
           T LH AA + ++     ++  K S   KQ++ G +P+ LA Q    ++V+ LI    + V
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-V 247

Query: 115 RVQGREGVTPLHYVAEN-----VDLLYK 137
                   T       N     VD+  +
Sbjct: 248 EAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 11/157 (7%)

Query: 28  GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR------ 81
            +   +  ++       D  +      T L I A     +       L    A+      
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 82  ----KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LY 136
                +   G + LH A Q S+  +V  L+    +    Q  +G TP+   A+   + + 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 137 KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
            +L     S+  V     TA  +A  N+   ++ +  
Sbjct: 238 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 10/87 (11%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             LH  A+ G       I   + S      ++  + LH    NS  +    LI  +    
Sbjct: 4   IKLHTEAA-GSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 115 RVQG-------REGVTPLHYVAENVDL 134
              G        +  TPL         
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRR 87

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
           T LH+AA+ G+      +++ +      ++  G +PLH A      +    L++   + +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-M 258

Query: 115 RVQGREGVTPLHYVAENV 132
               + G T      E++
Sbjct: 259 EAVNKVGQTAFDVADEDI 276

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 87  GCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAEN 131
           G + LHLA+ + H   +  L+        + +Q   G T LH  A  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 54  DTHLHIAASMGHVNFALEIMRLK--PSFARKQNQYGCSPLHLALQNSHTQM 102
           DT LH+A    H  F   ++       +   QN  G + LHLA        
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 1/132 (0%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
           L+ A    +   L  L+   A       Q     T LH+AA +G  +   E +    +  
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV-EKLYAAGAGV 71

Query: 81  RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLT 140
               + G + LHLA +         L+    +  R      +T       +       + 
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 141 ACPKSILQVTIR 152
           + P    +   R
Sbjct: 132 SQPNPENEEEPR 143

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 8e-06
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 9/138 (6%)

Query: 55  THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
               +AA  G  + AL+ + L        +           LA +N H  ++ RL ++  
Sbjct: 92  VICFVAAITGCSS-ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 112 NLVRVQGRE-GVTPLHYVAENVDLLY-KFL---TACPKSILQVTIRKETALYVAAKNDKL 166
             +    +          AEN  L     L        + +          + A      
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 167 KVLKVMLGWLRYVNKDDI 184
            V+  +L     +   +I
Sbjct: 211 NVINFLLDCPVMLAYAEI 228

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 19/191 (9%)

Query: 10  HQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFA 69
           H       D +L         +     I   A  +  +        H+ +  +       
Sbjct: 5   HNIENYENDPQLRLIPWILWENLFQHFI--SANELSLMTLSYKEAIHIFLPGTKNMEQVR 62

Query: 70  LEIMRL----------KPSFARKQNQYGCSPLHLALQNSHT---QMVLRLIDVDRNLVRV 116
             +               S A K+         +A     +     +  L+  D   V+V
Sbjct: 63  QLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKV 121

Query: 117 QGREGVTPLHYVAEN--VDLLYKFLTACPKSILQ-VTIRKETALYVAAKNDKLKVLKVML 173
              E        AEN  + +L +     P  I+  +      A  +AA+N  L VL  + 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 174 GWLRYVNKDDI 184
                     I
Sbjct: 182 ELAPTEATAMI 192

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 18/133 (13%)

Query: 47  IDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRL 106
           +D    +          G       I          + +       L+  +         
Sbjct: 217 LDCPVMLAYAEIHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGV------- 264

Query: 107 IDVDRNLVRVQGREGVTPLHYVAENVD------LLYKFLTACPKSILQVTIRKETALYVA 160
            D+      +QG   +  L    + V       LL             +       L +A
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 161 AKNDKLKVLKVML 173
            +        ++L
Sbjct: 325 LRLGNQGACALLL 337

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-06
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 16  RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL 75
           R   RL+ AA  G+V  +  L+  +    D +++       + +  S       L+    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 76  KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLL 135
                                ++   +V    DV+          G  P+H   +     
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-----PDGTGALPIHLAVQEGHTA 115

Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174
                A    + +   R  T L +A +     ++ ++ G
Sbjct: 116 VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 90  PLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
           PLH A   +    V  L+    +L+  + ++G  PLH+    
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF 44

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 5e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQM 102
           +  LH A          E++  KPS   +++Q G  PLH ++     ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 55  THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
             LH AAS+G +     +  L  S    Q++ G +PL  AL   H    + L++      
Sbjct: 140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 199

Query: 115 RVQGREGVTPLHYVAEN--VDLL 135
            +   +G                
Sbjct: 200 DLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 83  QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLLYKFLT 140
           ++++   PLH A      +++  L  + ++ V  Q ++G TPL +     + D     + 
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 193

Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVL 169
                   V  +   A  VA      K  
Sbjct: 194 KYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 47/223 (21%)

Query: 21  LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHV-------------- 66
           L++A        + EL+     L+ Q DQ       LH + S                  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 67  -----------------------NFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMV 103
                                         R       K    G + LHLA+     ++ 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 104 LRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAA 161
             LI+   + VR++ +    PLH  A    + L+         ++     +  T L+ A 
Sbjct: 122 QFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKL 204
                    +++            +  D++G+    ++++ ++
Sbjct: 181 AEGHGDAAVLLV-----EKYGAEYDLVDNKGAKAEDVALNEQV 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDVDRNL---VRVQGREGVTPLHYVAEN 131
           G +PLH+A+   +   V RL+++ +     + +      TPLH     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 54  DTHLHIAASMGHVNFALEIMRLKPSFAR---KQNQYGCSPLHLALQNSHTQM 102
           DT LHIA   G++     ++ L     R     N    +PLHLA+  +   +
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 54  DTHLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQM 102
           D+ LH+A         +E++R      +F   QN    +PLHLA+  +  ++
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 54

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 87  GCSPLHLALQNSHTQMVLRLIDV---DRNLVRVQGREGVTPLHY 127
           G S LHLA+ +    + + +I     D   +  Q     TPLH 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 58  HIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQ 117
           H+A+  G++     ++ L      ++   G + LHLA+   +  +V  L+    + V   
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRV 174

Query: 118 GREGVTPLHYVAEN 131
             +G +P       
Sbjct: 175 TYQGYSPYQLTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 24  AAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ 83
           A+  G +  +  L+   A       +     T LH+A  + + +    +++      R  
Sbjct: 118 ASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV- 174

Query: 84  NQYGCSPLHLALQNSHTQMVLRLID 108
              G SP  L      T++  +L  
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQLGQ 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-36  Score=250.75  Aligned_cols=184  Identities=18%  Similarity=0.123  Sum_probs=150.5

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      +++.+|.||||+||+.|+.+++++|++.|++.......+..|+||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            56788999999999999999999999998775444334446999999999999999999999999876 78899999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCcc----------------------------------------------ceecCCCCCchh
Q 022200           92 HLALQNSHTQMVLRLIDVDRNL----------------------------------------------VRVQGREGVTPL  125 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~----------------------------------------------~~~~d~~g~tpL  125 (301)
                      |+|+..++.+++++|++.....                                              ++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            9999999999999998754321                                              344567778888


Q ss_pred             HHHHhc-HHHHHHHHHhCCcchhcc-ccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          126 HYVAEN-VDLLYKFLTACPKSILQV-TIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       126 h~A~~~-~~~~~~lL~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+|+.. ..+++++|++.+++++.. +..|.||||+|+..|+.+++++|+++      |++++.+|..|+||||+|+..
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~------gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA------GADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHTS
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHC
Confidence            888877 667777777777776653 45678888888888888888888875      778888888888888887776

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=241.04  Aligned_cols=200  Identities=26%  Similarity=0.323  Sum_probs=180.1

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      .++.|+.+|+.|+++.|+.+++..+......|.  .|+||||+|+..|+.+++++|+..+... ...+..+.+++++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~--~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCC--CCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccc
Confidence            457899999999999999999887776666555  5999999999999999999999998766 5557789999999999


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      .++.+++++|++++++ ++.+|..|.||||+|+.. ..+++++|++.|++++.++..|.||||+|+..++.+++++|++.
T Consensus        80 ~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999999998 899999999999999999 88899999999999999999999999999999999999999986


Q ss_pred             hhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhh
Q 022200          176 LRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEIAD  226 (301)
Q Consensus       176 ~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~  226 (301)
                            +.+++.+|.+|+||||+|++.       +|++.     .+|.+|+||+|+|...+.+
T Consensus       159 ------~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~  215 (223)
T d1uoha_         159 ------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGL  215 (223)
T ss_dssp             ------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHH
T ss_pred             ------cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHH
Confidence                  899999999999999999988       67766     8899999999999554433

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=236.05  Aligned_cols=180  Identities=20%  Similarity=0.232  Sum_probs=166.2

Q ss_pred             ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      ..+..|.||||+|+..|+.++++.+++.+........   .+.++++.++..|+.+++++|++.+.++ +.+|..|.|||
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL  107 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD---AGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPL  107 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccccccccccccc---cccccccccccccccchhHHHhccCcee-EeeCCCCCchh
Confidence            3467799999999999999999999998876654443   4889999999999999999999999876 88899999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK  170 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~  170 (301)
                      |+|+..|+.+++++|+++|++ ++.+|..|.||||+|+.. ...+.++|...+.+++..|..|+||||+|+..|+.++++
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~  186 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK  186 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             hHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHH
Confidence            999999999999999999999 899999999999999999 777889999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          171 VMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +|++.      |++++.+|.+|+||||+|...
T Consensus       187 ~LL~~------Gad~~~~d~~g~tpl~~A~~~  212 (223)
T d1uoha_         187 LLVSQ------GASIYIENKEEKTPLQVAKGG  212 (223)
T ss_dssp             HHHHT------TCCSCCCCTTSCCHHHHCCTT
T ss_pred             HHHHC------CCCCCCCCCCCCCHHHHHHCC
Confidence            99996      999999999999999998543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-32  Score=224.72  Aligned_cols=198  Identities=20%  Similarity=0.200  Sum_probs=174.5

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--hhhcCCCCCcHHHHHH
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--ARKQNQYGCSPLHLAL   95 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~   95 (301)
                      ++|||+||+.|+.+.|+.|++..+......+.  +|+||||+|+..|+.+++++|++.++++  .+..+..|.+|+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            47999999999999999999987665555444  6999999999999999999999998654  3456789999999999


Q ss_pred             HCCCHHHHHHHhhcCCcc-ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           96 QNSHTQMVLRLIDVDRNL-VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      ..+..++++.++..+... ....+..+.||++.++.. ..++..+|+..|.+++..|..|+||||+|+..|+.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccc
Confidence            999999999999887641 445678899999999998 888899999999999999999999999999999999999999


Q ss_pred             HhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh------hhhCCCCchhhhhhh
Q 022200          174 GWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST------VRNFGGREGSSLATV  222 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~------~~n~~g~tpl~~a~~  222 (301)
                      ++     .+.+++.+|.+|+||||+|+..       +|++.      .+|.+|+||||+|..
T Consensus       159 ~~-----~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         159 GL-----GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             TT-----TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             cc-----ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            85     2478899999999999999998       67754      789999999999964

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.1e-32  Score=234.52  Aligned_cols=204  Identities=23%  Similarity=0.194  Sum_probs=174.3

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      ++.++.|+|+.||+.|++++|+.||+.|++++..+.   +|+||||+|+..|+.+++++|++++.+. ...+..+.+||+
T Consensus        36 ~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~---~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~  111 (291)
T d1s70b_          36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLH  111 (291)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCC---CCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccc
Confidence            345566899999999999999999999998765443   4999999999999999999999998876 667889999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHH-HHHhCCc--------------------------
Q 022200           93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYK-FLTACPK--------------------------  144 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~-lL~~~~~--------------------------  144 (301)
                      +++..++.++++.|++.++. .+..|..|.+|+++|+.. ...++. ++...+.                          
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence            99999999999999999988 889999999999999887 333333 3333222                          


Q ss_pred             chhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCC
Q 022200          145 SILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFG  212 (301)
Q Consensus       145 ~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~  212 (301)
                      +....+..|.||||.|+..|+.+++++|++.      |++++.+|.+|+||||+|+..       +|+++     .+|+.
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~------g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~  264 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV  264 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccccc------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            2334567899999999999999999999986      999999999999999999998       77777     78999


Q ss_pred             CCchhhhhhhhhhhh
Q 022200          213 GREGSSLATVEIADY  227 (301)
Q Consensus       213 g~tpl~~a~~~~~~~  227 (301)
                      |+||||+|++++..+
T Consensus       265 G~TaL~~A~e~~~~~  279 (291)
T d1s70b_         265 GQTAFDVADEDILGY  279 (291)
T ss_dssp             SCCTTTSCCSGGGHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999997654433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=4e-31  Score=222.86  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=125.4

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHH--------HcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC
Q 022200           15 SRTDQRLNEAAQAGNVDALYELI--------WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY   86 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   86 (301)
                      ..|.||||+||..|+.++|+.|+        +.|++++....   +|+||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~---~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~  106 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKS  106 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC---CCCeeecccccccccccccccccccccc-cccccc
Confidence            45889999999999999988775        44666654433   5999999999999999999999999886 788999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHhhcCCc--cceec--------------------------------------------CCC
Q 022200           87 GCSPLHLALQNSHTQMVLRLIDVDRN--LVRVQ--------------------------------------------GRE  120 (301)
Q Consensus        87 g~tpLh~A~~~~~~~~v~~Ll~~~~~--~~~~~--------------------------------------------d~~  120 (301)
                      |.|||++|+..++.++++++...+..  .++..                                            +..
T Consensus       107 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
T d2fo1e1         107 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK  186 (277)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCC
T ss_pred             ccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccC
Confidence            99999999999999999988764311  12223                                            344


Q ss_pred             CCchhHHHHhc--HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHH
Q 022200          121 GVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHI  198 (301)
Q Consensus       121 g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~  198 (301)
                      |.||||+++..  ...+..++...+.+++.+|..|+||||+|+..|+.+++++|+++      |++++.+|.+|+||||+
T Consensus       187 g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~------gadin~~d~~G~T~L~~  260 (277)
T d2fo1e1         187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ------GASVEAVDATDHTARQL  260 (277)
T ss_dssp             CCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCSSCCCSSSCCHHHH
T ss_pred             CCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC------cCCCCCcCCCCCCHHHH
Confidence            55666665555  33333344455555555566666666666666666666666654      55666666666666666


Q ss_pred             HHHH
Q 022200          199 SISR  202 (301)
Q Consensus       199 A~~~  202 (301)
                      |++.
T Consensus       261 A~~~  264 (277)
T d2fo1e1         261 AQAN  264 (277)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6555

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=225.47  Aligned_cols=195  Identities=25%  Similarity=0.247  Sum_probs=172.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ||||.||..|+.++|+.|++.|++++..+.   .|+||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~---~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSS---CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            899999999999999999999998765433   4999999999999999999999999876 888999999999999999


Q ss_pred             CHHHHHHHhhcCCcc--------------------------------ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           99 HTQMVLRLIDVDRNL--------------------------------VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~--------------------------------~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      +.+++++|+..+++.                                ....+..+.++|+.|+.. ...+++.|++.+.+
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999765432                                344577889999999998 77889999999999


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCC
Q 022200          146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGG  213 (301)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g  213 (301)
                      ++..+..|.+|||+|+..|+.+++++|+++      |++++..+..|.||+|+++..       .|+..     ..+..|
T Consensus       158 ~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~------g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR------GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  231 (408)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGG------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCcCCCcCchHHHHHHHcCCHHHHHHHHhc------CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCC
Confidence            999999999999999999999999999986      899999999999999999887       33333     567788


Q ss_pred             Cchhhhhhhh
Q 022200          214 REGSSLATVE  223 (301)
Q Consensus       214 ~tpl~~a~~~  223 (301)
                      .||+++|+..
T Consensus       232 ~t~l~~a~~~  241 (408)
T d1n11a_         232 VTPLHLAAQE  241 (408)
T ss_dssp             CCHHHHHHHT
T ss_pred             CCHHHHHHHh
Confidence            8999888554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.9e-30  Score=216.12  Aligned_cols=199  Identities=19%  Similarity=0.140  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchh---------------
Q 022200           16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA---------------   80 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---------------   80 (301)
                      +++++|+.|++.|++++|+.|++.|++++...+.  .|+||||+|+..|+.++++.|++.+....               
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~--~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCC--CCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            4678999999999999999999999998765544  49999999999999999999998765220               


Q ss_pred             -----------------hhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCc---------cceecCCCCCchhHHHHhc-HH
Q 022200           81 -----------------RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN---------LVRVQGREGVTPLHYVAEN-VD  133 (301)
Q Consensus        81 -----------------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~---------~~~~~d~~g~tpLh~A~~~-~~  133 (301)
                                       ...+..+.+++++|+..++...++.++....+         .....+..|.||||+|+.. ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                             01123344445555555555444444433221         0122344455555555555 33


Q ss_pred             HHHHHHH-hCCcchhccccCCCcHHHHHHHcC----CHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH------
Q 022200          134 LLYKFLT-ACPKSILQVTIRKETALYVAAKND----KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR------  202 (301)
Q Consensus       134 ~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g----~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~------  202 (301)
                      +++++|+ ..|++++..+..|.++++.+...+    ..+++++|++.      |++++.+|..|.||||+|+..      
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~------ga~~n~~~~~g~t~L~~a~~~~~~~~v  235 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLV  235 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC------CCCCCccCCCCCCccchhhhcCcHHHH
Confidence            3333333 335555555555555554433322    22355555543      555555555555555555554      


Q ss_pred             -HHHhh------hhhCCCCchhhhhhh
Q 022200          203 -KLEST------VRNFGGREGSSLATV  222 (301)
Q Consensus       203 -~Ll~~------~~n~~g~tpl~~a~~  222 (301)
                       +|++.      .+|.+|.||||+|+.
T Consensus       236 ~~lL~~~g~din~~d~~G~TpL~~A~~  262 (285)
T d1wdya_         236 QRLLEQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             HHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence             33332      445555555555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.6e-30  Score=213.12  Aligned_cols=159  Identities=21%  Similarity=0.196  Sum_probs=141.4

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCC----------------
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP----------------   77 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------------   77 (301)
                      +..|.||||+||..|+.++++.|++.|++++....   .|.||||+|+..|+.++++.|++...                
T Consensus        42 ~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~---~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  118 (255)
T d1oy3d_          42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (255)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT---TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             CCCCCCccchHHhhccccccccccccccccccccc---ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhh
Confidence            35678999999999999999999999998765443   49999999999999999999876532                


Q ss_pred             ------------------------------chhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHH
Q 022200           78 ------------------------------SFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  127 (301)
Q Consensus        78 ------------------------------~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  127 (301)
                                                    ...+.+|..|.||||+|+..++.+++++|++.+++.....+..|.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             hcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccc
Confidence                                          11134678899999999999999999999999999555677899999999


Q ss_pred             HHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          128 VAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       128 A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      |+.. ..+++++|+++|++++.+|..|+||||+|+..++.+++++|+++
T Consensus       199 A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             cccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999 88899999999999999999999999999999999999999997

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-31  Score=217.48  Aligned_cols=177  Identities=19%  Similarity=0.161  Sum_probs=149.3

Q ss_pred             CCCHHHHHHHHhCCHHHHHH----HHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           16 RTDQRLNEAAQAGNVDALYE----LIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      +|+||||+|+..|+.+.+..    +...+.+++....   +|+||||+|+..|+.+++++|++.++++ +.+|..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~---~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN---LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT---TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC---CCCccccccccccccccccccccccccc-ccccccccccc
Confidence            58999999999999765554    4455666544433   5999999999999999999999999877 78899999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCc-----cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHHHcC
Q 022200           92 HLALQNSHTQMVLRLIDVDRN-----LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAAKND  164 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~~~g  164 (301)
                      |+++..++.++++.|++.+..     ........|.||||.|+.. ...++.++...|..++..+ .+|.||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            999999999999999986533     2344556789999999999 7777888888888887765 57999999999999


Q ss_pred             CHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          165 KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      +.+++++|+++      |++++.+|.+|+||||+|+..
T Consensus       157 ~~~~v~~Ll~~------gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         157 NPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             CHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTS
T ss_pred             cHHHHHHHHhc------CCcccccCCCCCCHHHHHHHC
Confidence            99999999986      999999999999999999876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-29  Score=208.16  Aligned_cols=184  Identities=16%  Similarity=0.084  Sum_probs=163.4

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch-hhhcCCCCCcHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF-ARKQNQYGCSPL   91 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~tpL   91 (301)
                      .+.+|.||||+|+..|+.++++.|++.|++++........|.+|+|+++..+..++++.++..+... ....+..+.||+
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4578999999999999999999999999887655444456999999999999999999999886543 345678899999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCCHHHH
Q 022200           92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDKLKVL  169 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~~  169 (301)
                      +.++..++.+++++|++.+.. ...+|..|+||||+|+.. ...++++|++.+ .+++.+|..|+||||+|+..|+.+++
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  188 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  188 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHH
Confidence            999999999999999999998 889999999999999999 677777777765 68899999999999999999999999


Q ss_pred             HHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++|++.     .|++++.+|.+|+||||+|+..
T Consensus       189 ~~Ll~~-----~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         189 VLLVEK-----YGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHHHHH-----HCCCSCCCCTTSCCTGGGCSCH
T ss_pred             HHHHHh-----cCCCCCCcCCCCCCHHHHHhhH
Confidence            999962     3899999999999999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=7.7e-31  Score=221.14  Aligned_cols=196  Identities=17%  Similarity=0.197  Sum_probs=156.0

Q ss_pred             CHHHHHHHHh-CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHH--------HhCCchhhhcCCCCC
Q 022200           18 DQRLNEAAQA-GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIM--------RLKPSFARKQNQYGC   88 (301)
Q Consensus        18 ~~~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~g~   88 (301)
                      +||||.+++. |..++++.|.+.+.+..+.    .+|+||||+||..|+.++++.|+        +.|+++ +.+|.+|+
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~----~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~   75 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDP----RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDEN   75 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCC----SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCC----CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCC
Confidence            4788866555 5666666666766654321    24999999999999999887775        446665 78899999


Q ss_pred             cHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC------------------------
Q 022200           89 SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP------------------------  143 (301)
Q Consensus        89 tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~------------------------  143 (301)
                      ||||+|+..|+.+++++|+++|++ ++.+|..|.|||++|... ...+..++...+                        
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  154 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             eeeccccccccccccccccccccc-cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcc
Confidence            999999999999999999999999 999999999999999987 333333332211                        


Q ss_pred             -----------------------cchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHH
Q 022200          144 -----------------------KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI  200 (301)
Q Consensus       144 -----------------------~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~  200 (301)
                                             ...+..+..|+||||+++..++.+++++++..     .+.+.+.+|..|+||||+|+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~-----~~~~~~~~d~~g~tpL~~A~  229 (277)
T d2fo1e1         155 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIMLAA  229 (277)
T ss_dssp             STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH-----SCCCTTCCCTTCCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccCCCCcccccccccccccccccccc-----ccccccccCCCCCCHHHHHH
Confidence                                   01123455789999999999999999987763     48889999999999999999


Q ss_pred             HH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          201 SR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       201 ~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      +.       +|+++     .+|.+|+||||+|+...
T Consensus       230 ~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         230 QEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            98       77777     78999999999997754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-29  Score=201.48  Aligned_cols=198  Identities=19%  Similarity=0.179  Sum_probs=156.3

Q ss_pred             CCCHHHHHHHHhCCHHHHHHHHH----cChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200           16 RTDQRLNEAAQAGNVDALYELIW----EDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL   91 (301)
Q Consensus        16 ~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   91 (301)
                      +|+||||+||+.|+.++|+.|++    .|.+++....   +|+||||+|+..|+.+++++|+++++.. +..+..|.+++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~---~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~   77 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---LRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   77 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC---CCCccceehhcccccccccccccccccc-ccccccccccc
Confidence            69999999999999999999986    4555543332   5999999999999999999999998776 67788999999


Q ss_pred             HHHHHCCCHHHHHHHhhcCCc---cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc-hhccccCCCcHHHHHHHcCCH
Q 022200           92 HLALQNSHTQMVLRLIDVDRN---LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS-ILQVTIRKETALYVAAKNDKL  166 (301)
Q Consensus        92 h~A~~~~~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~-~~~~d~~g~t~Lh~A~~~g~~  166 (301)
                      +.|...++.++++.+......   ..+.......+||+.+... .......|.....+ ....+..+.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            999999999999887765322   2344556677888888877 44444555544443 334556788899999888888


Q ss_pred             HHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       167 ~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                      .+++.+++.      +..++.+|..|+||||+|+..       +|+++     .+|.+|+||||+|++.
T Consensus       158 ~~~~~~~~~------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         158 SMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhhhhhhhh------ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            888888885      788888888899999998888       66665     6788899999988643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.4e-28  Score=213.18  Aligned_cols=196  Identities=26%  Similarity=0.238  Sum_probs=142.7

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ   96 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~   96 (301)
                      +.+||+.|+..|+.++++.|++.|++++....   .|.||+|+++.....++...++...... ...+..|.||||+|+.
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW---NGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT---TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCcccccCC---CCCCcchhhhccchhhhhhhhhhccccc-cccCCCCCCHHHHHHH
Confidence            33444444444444444444444443322211   2444444444444444444444333322 3345667788888888


Q ss_pred             CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200           97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus        97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      .+..++++++++.+.. .+..+..|.|||+.|+.. ...+.++|++.|++++..+..+.||||.++..++.++++++++.
T Consensus       241 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         241 EGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             TTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             hCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence            8888888888888877 778888899999999988 77888888999999999999999999999999999999999985


Q ss_pred             hhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200          176 LRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE  223 (301)
Q Consensus       176 ~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~  223 (301)
                            |++++.+|.+|+||||+|++.       +|+++     .+|++|+||||+|.+.
T Consensus       320 ------g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         320 ------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             ------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             ------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence                  999999999999999999988       67777     8899999999999665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-28  Score=187.69  Aligned_cols=150  Identities=23%  Similarity=0.355  Sum_probs=133.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcC-hhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           19 QRLNEAAQAGNVDALYELIWED-AYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      ..|+.||..|+++.|+.||+.+ .+++.. +.  +|+||||+|+ .|+.+++++|++.+.++ +.++..|.+|+++++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~--~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NR--FGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CT--TSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CC--CCCccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            5699999999999999999874 454333 32  5999999886 58899999999998876 77788999999999999


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      ++.++++++++++++ ++.+|..|+||||+|+.. ..+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus        79 ~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-cccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999998 899999999999999999 777888877 6899999999999999999999999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=186.81  Aligned_cols=151  Identities=20%  Similarity=0.279  Sum_probs=134.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      ++||+||..|++++|+.|++.|++++..+.   +|+||||+|+ .|+.+++++|++.++++ +.++..|.+|++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~---~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG---FGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---TSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC---cccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            789999999999999999999998765433   5999999875 78999999999998876 778999999999999999


Q ss_pred             CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200           99 HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +.+.++.|++.+.+ ++..|..|.+|||+|+.. ..+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          78 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999988 899999999999999998 666667666555 48899999999999999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-27  Score=183.97  Aligned_cols=149  Identities=23%  Similarity=0.302  Sum_probs=130.9

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      .|||+.||+.|+.++|+.||++|++.. . +  ..|+||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~-~--~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-T-D--WLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-C-C--TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-c-c--cCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            489999999999999999999998754 2 2  35999999999999999998888876665 55577888999999999


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM  172 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L  172 (301)
                      .+.++++++++.+++ .+.+|..|+||||+|+.. ..+++++|++.|++++.+|.+|.||||+|+.+|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999988 888999999999999998 88888999999999999999999999999999999999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=3e-28  Score=206.89  Aligned_cols=180  Identities=18%  Similarity=0.118  Sum_probs=160.0

Q ss_pred             cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200           13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH   92 (301)
Q Consensus        13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   92 (301)
                      .+..|.||||+|+..|+.++|+.|++++.+......   .+.+||+.|+..|+.++++.|++++... +..|..+.+|++
T Consensus        69 ~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~---~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~  144 (291)
T d1s70b_          69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---EGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLD  144 (291)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHhcCCceeeeeecccccccccccc---cccccccccccccccchhhcccccCccc-ccccccCccccc
Confidence            367789999999999999999999999987644333   4899999999999999999999998765 677999999999


Q ss_pred             HHHHCCCHHHHHHHhhcCCcc--------------------------ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200           93 LALQNSHTQMVLRLIDVDRNL--------------------------VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS  145 (301)
Q Consensus        93 ~A~~~~~~~~v~~Ll~~~~~~--------------------------~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~  145 (301)
                      +|+..+..+.++.++......                          ....+..|.||||+|+.. ...++++|++.|++
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec
Confidence            999999999988888643211                          345678899999999999 88889999999999


Q ss_pred             hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++.++..|+||||+|+..|+.+++++|+++      |++++.+|..|+||||+|++.
T Consensus       225 in~~~~~g~TpL~~A~~~g~~~iv~lLl~~------Gadv~~~d~~G~TaL~~A~e~  275 (291)
T d1s70b_         225 VNIKDYDGWTPLHAAAHWGKEEACRILVEN------LCDMEAVNKVGQTAFDVADED  275 (291)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTTTSCCSG
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHH
Confidence            999999999999999999999999999996      999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.5e-27  Score=190.54  Aligned_cols=178  Identities=21%  Similarity=0.186  Sum_probs=111.0

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA   94 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   94 (301)
                      .+|.||||+||+.|+.++++.|++.|++++....   .+.++++.++..++.....................|.++.+.+
T Consensus        21 ~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAAKRLLDAGADANSQDN---TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhhccccccccc---ccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455555555555555555555555555433222   2555555555555555444444433333333344555555555


Q ss_pred             HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200           95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML  173 (301)
Q Consensus        95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll  173 (301)
                      .........+.|.+.+++ ++.++..|+|||++++.. ...++..++..+.+++..|..|.||||+|+..|+.+++++|+
T Consensus        98 ~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH
Confidence            555566666666666666 667777777777777776 666666677777777777777777777777777777777777


Q ss_pred             HhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          174 GWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       174 ~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ++      |++++.+|..|+||||+|+++
T Consensus       177 ~~------gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         177 DN------FANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             HT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred             HC------CCCCCCcCCCCCCHHHHHHHc
Confidence            75      777777777777777777765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.5e-27  Score=189.92  Aligned_cols=186  Identities=19%  Similarity=0.240  Sum_probs=165.1

Q ss_pred             HHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhc
Q 022200           30 VDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV  109 (301)
Q Consensus        30 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  109 (301)
                      .++|+.|+++|++++...+.  +|.||||+||..|+.+++++|++.++.+ +.++..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~--~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDK--TGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCcCC--CCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            47999999999998765444  4999999999999999999999999887 78899999999999999999888877776


Q ss_pred             CCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccc
Q 022200          110 DRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRK  188 (301)
Q Consensus       110 ~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  188 (301)
                      ...........|.++.+.+... .....++|...+.+++.++..|.|||++++..+..++++.+++.      +.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~------~~~~~~~  152 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH------HANRDAQ  152 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCTTCC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc------ccccccc
Confidence            6554556667788899888777 77778888999999999999999999999999999999999986      8899999


Q ss_pred             cCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          189 DDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       189 d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      |..|+||||+|+..       .|+++     .+|.+|+||||+|++..
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL  200 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999998       77777     78999999999997753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=184.56  Aligned_cols=142  Identities=16%  Similarity=0.213  Sum_probs=132.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN  131 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  131 (301)
                      +| +|||+||..|+.++|+.|+++|+++ +.+|..|.||||+|+ .|+.+++++|++.+++ ++.++..|.+||+.++..
T Consensus         1 ~~-~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           1 WG-NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             CH-HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             Ch-HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccc-cccccccCcccccccccc
Confidence            35 8999999999999999999999886 889999999999886 7999999999999999 999999999999999999


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                       ...+...++..+.+++..+..|.+|||+|+..++.+++++|+++     .+.+++.+|.+|.||||+|++.
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----~~~~~~~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_          77 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-----TASNVGHRNHKGDTACDLARLY  143 (156)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----SCCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccCCCCCCHHHHHHHc
Confidence             78888888999999999999999999999999999999999986     2448899999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=184.46  Aligned_cols=139  Identities=19%  Similarity=0.261  Sum_probs=130.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HH
Q 022200           55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VD  133 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~  133 (301)
                      +.||.||..|+.++|++|++.++..++.+|..|+||||+|+ .|+.+++++|++.+.+ ++..+..|.+|++.++.. ..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc-ccccccccccccccccccccc
Confidence            45999999999999999999866666899999999999987 5899999999999999 899999999999999999 88


Q ss_pred             HHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          134 LLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       134 ~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      .+.+++++.|++++.+|..|.||||+|+..|+.+++++|++       +++++.+|.+|+||||+|++.
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-------~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHS
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccc-------cccccccCCCCCCHHHHHHHc
Confidence            89999999999999999999999999999999999999885       889999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.4e-28  Score=196.38  Aligned_cols=165  Identities=19%  Similarity=0.219  Sum_probs=137.8

Q ss_pred             CCChHHHHHHHcCCHHHH----HHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHH
Q 022200           52 FVDTHLHIAASMGHVNFA----LEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  127 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v----~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  127 (301)
                      +|.||||+|+..|+.+++    +.+...+..+ +.+|.+|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccc-cccccccccccccc
Confidence            399999999999997554    4455556554 88899999999999999999999999999999 89999999999999


Q ss_pred             HHhc-HHHHHHHHHhCCcc------hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCccccccccc-CCCCcHHHHH
Q 022200          128 VAEN-VDLLYKFLTACPKS------ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKD-DEGSILLHIS  199 (301)
Q Consensus       128 A~~~-~~~~~~lL~~~~~~------~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d-~~g~tpLh~A  199 (301)
                      ++.. ...+++.++..+..      .......|.||||.|+..++.+++++|++.      +..++..+ .+|+||||+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL------GADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc------CcccccccccCCCCccccc
Confidence            9998 66777877776544      334455689999999999999999999986      77777654 6799999999


Q ss_pred             HHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200          200 ISR-------KLEST-----VRNFGGREGSSLATVEI  224 (301)
Q Consensus       200 ~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~  224 (301)
                      ++.       +|+++     .+|.+|+||+|+|+...
T Consensus       153 ~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         153 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             cccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCC
Confidence            998       67766     88999999999997654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.2e-26  Score=178.31  Aligned_cols=140  Identities=22%  Similarity=0.248  Sum_probs=131.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-H
Q 022200           54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-V  132 (301)
Q Consensus        54 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~  132 (301)
                      .||||.||+.|+.++|+.||+++++. + .|..|+||||+|+..++.++++.++..... ....+..+.++++.++.. .
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            49999999999999999999999865 3 699999999999999999999999998887 677788899999999988 7


Q ss_pred             HHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          133 DLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       133 ~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      ..+++++...+.+++.+|..|+||||+|+..|+.+++++|+++      |++++.+|.+|.||||+|+.+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~------gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY------GADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc------ccCCcccCCCCCCHHHHHHHc
Confidence            7888999999999999999999999999999999999999996      999999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2e-27  Score=203.33  Aligned_cols=178  Identities=9%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCH---HHHHHHHHhCCchhhhcCCCCCcH
Q 022200           14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHV---NFALEIMRLKPSFARKQNQYGCSP   90 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~tp   90 (301)
                      +..|.||||+||..|+.++|+.||+.|+++.....   .|+||||.|+..++.   ..++.+++........+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~---~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc---ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCH
Confidence            45677777777777777777777777776654433   377777777766542   122233333222335567777777


Q ss_pred             HHHHHHCCC----HH--------HHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHH---HHHhCCcchhccccCCC
Q 022200           91 LHLALQNSH----TQ--------MVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYK---FLTACPKSILQVTIRKE  154 (301)
Q Consensus        91 Lh~A~~~~~----~~--------~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~---lL~~~~~~~~~~d~~g~  154 (301)
                      ||+++..+.    ..        ++.++++.+..........+.++++.+... ......   +....+..+|.+|.+|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            777665432    22        333444555443444555555666555444 111111   10111223688899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHH
Q 022200          155 TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI  200 (301)
Q Consensus       155 t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~  200 (301)
                      ||||+|++.|+.+++++|+++      |++++.+|..|.||||+|+
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~------GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDY------GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999996      9999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=179.71  Aligned_cols=168  Identities=20%  Similarity=0.168  Sum_probs=136.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHH----hCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHH
Q 022200           52 FVDTHLHIAASMGHVNFALEIMR----LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  127 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  127 (301)
                      +|+||||+||..|+.++++.|++    .+.++ +.+|..|+||||+|+..|+.+++++|++.|++ .+..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccc-cccccccccccccc
Confidence            49999999999999999999886    45544 88899999999999999999999999999999 88999999999999


Q ss_pred             HHhc-HHHHHHHHHhC----CcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          128 VAEN-VDLLYKFLTAC----PKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       128 A~~~-~~~~~~lL~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |... ...+.+.+...    ....+.......++|+.+.........+.|...     ........+..|.+|||.|+..
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~a~~~  154 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-----GADIDAVDIKSGRSPLIHAVEN  154 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc-----ccccccccccchhhHHHHHHHh
Confidence            9988 44444444332    223455667788999999999999999998874     1233445678899999999988


Q ss_pred             -------HHHhh-----hhhCCCCchhhhhhhhhhh
Q 022200          203 -------KLEST-----VRNFGGREGSSLATVEIAD  226 (301)
Q Consensus       203 -------~Ll~~-----~~n~~g~tpl~~a~~~~~~  226 (301)
                             .+++.     .+|..|.||+++|+.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~  190 (228)
T d1k1aa_         155 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL  190 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             hhhhhhhhhhhhccccccccccCcchHHHHHHcCCH
Confidence                   44444     7789999999999876443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.5e-27  Score=206.45  Aligned_cols=131  Identities=18%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             ccCCCHHHHHHHHhCCHHHHHH---HHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhc--CCCCC
Q 022200           14 KSRTDQRLNEAAQAGNVDALYE---LIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ--NQYGC   88 (301)
Q Consensus        14 ~~~~~~~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~g~   88 (301)
                      +..+.|+|++|++.|+.++++.   |++.|++++....   .|+||||+||..|+.++|++|++.++++ +..  +.+|.
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~---~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~  162 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA---ENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENY  162 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH---HHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCC
Confidence            3467899999999999887765   6888888766544   4999999999999999999999999876 443  45699


Q ss_pred             cHHHHHHHCCCHHHHHHHhhcCCcc--ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhc
Q 022200           89 SPLHLALQNSHTQMVLRLIDVDRNL--VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQ  148 (301)
Q Consensus        89 tpLh~A~~~~~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~  148 (301)
                      ||||+|+..|+.++|++|++.|+..  .+..+.+|.||+|.|+.+ ..+++++|++.|++++.
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            9999999999999999999998762  234556678888888888 88899999998887654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=167.36  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCC-chhHHHHhc
Q 022200           53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGV-TPLHYVAEN  131 (301)
Q Consensus        53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~  131 (301)
                      +.++||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ .|+.+++++|++.|++ ++.++..|. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            668999999999999999999988776 788899999998764 6899999999999998 888888775 699999988


Q ss_pred             -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200          132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG  174 (301)
Q Consensus       132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~  174 (301)
                       ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             7788888899999999999999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.6e-26  Score=166.31  Aligned_cols=106  Identities=21%  Similarity=0.187  Sum_probs=90.5

Q ss_pred             CcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCH
Q 022200           88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL  166 (301)
Q Consensus        88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~  166 (301)
                      .|||++|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            3788888888888888888888888 888888888888888888 77778888888888888888899999999999999


Q ss_pred             HHHHHHHHhhhhcCcccccccccCCCCcHHHHHH
Q 022200          167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI  200 (301)
Q Consensus       167 ~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~  200 (301)
                      +++++|+++      |++++.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~~------Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSK------GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTT------CCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcc------cccceeeCCCCCCHHHHHh
Confidence            999999885      8888888888888887763

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2e-25  Score=164.07  Aligned_cols=107  Identities=19%  Similarity=0.256  Sum_probs=84.9

Q ss_pred             CHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHC
Q 022200           18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQN   97 (301)
Q Consensus        18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~   97 (301)
                      +|||++|++.|++++|+.|++.|.+++....   .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~---~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE---GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS---SSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc---ccccccccccccccccccccccccccee-eecccccccchhhhhhc
Confidence            4788888888888888888888877654433   4888888888888888888888887765 67788888888888888


Q ss_pred             CCHHHHHHHhhcCCccceecCCCCCchhHHHH
Q 022200           98 SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA  129 (301)
Q Consensus        98 ~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  129 (301)
                      |+.+++++|++.|++ ++.+|.+|.||||+|.
T Consensus        79 ~~~~~v~~Ll~~Gad-~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKGAD-KTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTCCC-SSSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhccccc-ceeeCCCCCCHHHHHh
Confidence            888888888888887 7888888888888764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=176.59  Aligned_cols=179  Identities=19%  Similarity=0.169  Sum_probs=119.4

Q ss_pred             cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch---------hhhcCC
Q 022200           15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF---------ARKQNQ   85 (301)
Q Consensus        15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~   85 (301)
                      ..+.++.+.|+..+..+.....++...+......   .+.++++.|+..|+...++.++......         ....+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (285)
T d1wdya_          70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF---YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK  146 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred             cccchhhHHHhhcCCccccchhhhhccccccccc---CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcc
Confidence            3455677777777777777777766544322211   3677777777777777777776653321         123345


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc-----HHHHHHHHHhCCcchhccccCCCcHHHH
Q 022200           86 YGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKETALYV  159 (301)
Q Consensus        86 ~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~-----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~  159 (301)
                      .|.||||+|+..|+.+++++|++. |++ ++..+..|.++++.+...     ...++++|++.|++++.+|..|.||||+
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCC-cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            677777777777777777777764 444 677777777766665443     4566777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200          160 AAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR  202 (301)
Q Consensus       160 A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~  202 (301)
                      |+..|+.+++++||+.     .|++++.+|.+|+||||+|++.
T Consensus       226 a~~~~~~~~v~~lL~~-----~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHTTCHHHHHHHHHS-----SSCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhhcCcHHHHHHHHHc-----CCCCCcCCCCCCCCHHHHHHHc
Confidence            7777777777777762     3677777777777777777776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=159.80  Aligned_cols=119  Identities=23%  Similarity=0.255  Sum_probs=81.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HH
Q 022200           55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VD  133 (301)
Q Consensus        55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~  133 (301)
                      ++|+.||..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.. ..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            4666677777777777777766654 66666777777777777777777777777766 666777777777777766 66


Q ss_pred             HHHHHHHhCCcchhcccc-CCCcHHHHH--HHcCCHHHHHHHHHh
Q 022200          134 LLYKFLTACPKSILQVTI-RKETALYVA--AKNDKLKVLKVMLGW  175 (301)
Q Consensus       134 ~~~~lL~~~~~~~~~~d~-~g~t~Lh~A--~~~g~~~~~~~Ll~~  175 (301)
                      +++++|+++|++++..+. .++||++++  +..|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            666777777777765553 466665544  456778888888763

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=158.70  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC-cHHHHHH
Q 022200           17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC-SPLHLAL   95 (301)
Q Consensus        17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpLh~A~   95 (301)
                      +.++||.|++.|++++|+.|++.|.+++....   +|.||||+|+ .|+.+++++|+++++++ +.++..+. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~---~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNS---YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccc---cccccccccc-ccccccccccccccccc-cccccccccccccccc
Confidence            56799999999999999999999998765433   5999999765 79999999999999887 66677665 6999999


Q ss_pred             HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHh
Q 022200           96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTA  141 (301)
Q Consensus        96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~  141 (301)
                      ..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999 999999999999999999 8888898864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=5.2e-26  Score=198.09  Aligned_cols=122  Identities=14%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHcCCHHHHHH---HHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecC--CCCCchhH
Q 022200           52 FVDTHLHIAASMGHVNFALE---IMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--REGVTPLH  126 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh  126 (301)
                      .|.||||+||..|+.+++++   |++.++++ +.+|.+|+||||+||..|+.++|++|++.|++ ++..+  .+|+||||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAENYHAFR  166 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccCCCChhH
Confidence            58999999999999988766   67777665 88899999999999999999999999999998 77765  46999999


Q ss_pred             HHHhc-HHHHHHHHHhCCcch---hccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          127 YVAEN-VDLLYKFLTACPKSI---LQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       127 ~A~~~-~~~~~~lL~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      +|+.. ..+++++|++.|++.   +..+.++.||+|.|+..|+.+++++|++.
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence            99999 899999999998765   34456678888999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.1e-24  Score=180.33  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=103.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCH---HHHHHHhhcCCccceecCCCCCchhHHH
Q 022200           52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHT---QMVLRLIDVDRNLVRVQGREGVTPLHYV  128 (301)
Q Consensus        52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~---~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  128 (301)
                      .|+||||+||..|+.++|++|++.|+++ +.+|..|+||||+||..++.   +.+..|++.....+..+|..|+||||++
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~  184 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  184 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH
Confidence            5889999999999999999999988876 77888999999999987652   1222233322222667788899999987


Q ss_pred             Hhc-----H--------HHHHHHHHhCCc-chhccccCCCcHHHHHHHcCCHHHHHHH-HHhhhhcCcccccccccCCCC
Q 022200          129 AEN-----V--------DLLYKFLTACPK-SILQVTIRKETALYVAAKNDKLKVLKVM-LGWLRYVNKDDIINRKDDEGS  193 (301)
Q Consensus       129 ~~~-----~--------~~~~~lL~~~~~-~~~~~d~~g~t~Lh~A~~~g~~~~~~~L-l~~~~~~~~~~~~~~~d~~g~  193 (301)
                      +..     .        +.++.++...+. ........+.++++.+........+..+ +.+.    .+..+|.+|.+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~in~~D~~G~  260 (301)
T d1sw6a_         185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI----IANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH----HHHTTTCCCTTSC
T ss_pred             HHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH----HhcCccCCCCCCC
Confidence            754     1        223334444333 3334445566666666655544443332 1110    0334789999999


Q ss_pred             cHHHHHHHH-------HHHhh-----hhhCCCCchhhhhh
Q 022200          194 ILLHISISR-------KLEST-----VRNFGGREGSSLAT  221 (301)
Q Consensus       194 tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~  221 (301)
                      ||||+|++.       +|++.     ++|++|+||||+|+
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999       77777     89999999999984

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-23  Score=156.13  Aligned_cols=119  Identities=20%  Similarity=0.179  Sum_probs=104.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200           19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS   98 (301)
Q Consensus        19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~   98 (301)
                      +.|+.|+..|+.++|+.|+++|.+++....   +|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~---~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND---EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT---TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc---cccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            679999999999999999999998765544   5999999999999999999999998876 888999999999999999


Q ss_pred             CHHHHHHHhhcCCccceecC-CCCCchhHHHHhc---HHHHHHHHHhC
Q 022200           99 HTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN---VDLLYKFLTAC  142 (301)
Q Consensus        99 ~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~---~~~~~~lL~~~  142 (301)
                      +.+++++|+++|++ ++..+ ..|.||++++...   ..+++++|+..
T Consensus        79 ~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999 77665 4689998877543   56788888753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.7e-22  Score=152.97  Aligned_cols=117  Identities=20%  Similarity=0.141  Sum_probs=74.2

Q ss_pred             HHHHHcCCHHHHHHHHHhCCchh-----hhcCCCCCcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchhHHHH
Q 022200           58 HIAASMGHVNFALEIMRLKPSFA-----RKQNQYGCSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA  129 (301)
Q Consensus        58 h~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  129 (301)
                      +.|++.++...+..++..+.+..     ...+..|.||||+|+..   ++.+++++|+++|++ ++.+|..|+||||+|+
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcccccccc
Confidence            34445555555544444443321     11245566666666653   456666777776666 6666667777777776


Q ss_pred             hc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200          130 EN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW  175 (301)
Q Consensus       130 ~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~  175 (301)
                      .. ..+++++|++.|++++.+|..|+||||+|++.|+.+++++|++.
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            66 66666666677777777777777777777777777777777775

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.9e-22  Score=152.87  Aligned_cols=123  Identities=18%  Similarity=0.222  Sum_probs=108.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200           20 RLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSPLHL   93 (301)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   93 (301)
                      .|+.|++.+++..+..++..|.+.....   .....|+||||+|+..   |+.+++++|+++|+++ +.+|..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            5789999999999999999988765432   1123589999999974   6789999999999876 8899999999999


Q ss_pred             HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCc
Q 022200           94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPK  144 (301)
Q Consensus        94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~  144 (301)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+.. ..+++++|++.+.
T Consensus        88 A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999 899999999999999999 8888898887654