Citrus Sinensis ID: 022205

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVTKTEETQLNRLENqvdnggggAWEYLCLVKKlkvrrpdkvlrhglsilndpkkrsalgpdvwTLYEQVSIAAMDCQCLDVAKDCIKVLQKqfpeskrvgRLEGILLEAKGLWAEAEKAYSSllednpldpvlHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELilsqptvplyhLAYADVLYTLGGVDNILLAKKYYAStidltggkntkaLFGICLCSSAIAQLtkgrnkedkespELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Flexible Loop (DISEMBL)
mvtkteetqlnrlenqvdnggggAWEYLCLVKKLKVRRPDKVLrhglsilndpkkrsalgpdVWTLYEQVSIAAMDCQCLDVAKDCIKVLQkqfpeskrvgrlEGILLEAKGLWAEAEKAYSSllednpldPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTkgrnkedkesPELQSLAAAALEKDYKQRAPAKLLLLTSalkslkts
Low Complexity Region (SEG)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPaklllltsalkslkts
Disordered region (IsUnstruct)
*******************GGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL***********************************************
Disordered Region (DISOPRED)
**********NRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI***************ELQSLAAAALE*****************LKSLKT*
Disordered Region (DISEMBL)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ**************LQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Disordered Region (DISPRO)
******ETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR*KEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q6TGY8	297	ER membrane protein compl	yes	no	0.823	0.835	0.406	2e-49
Q6INS3	297	ER membrane protein compl	N/A	no	0.803	0.814	0.408	8e-49
Q5M7J9	297	ER membrane protein compl	yes	no	0.803	0.814	0.404	2e-48
Q8AVU9	297	ER membrane protein compl	N/A	no	0.803	0.814	0.4	1e-47
Q9CRD2	297	ER membrane protein compl	yes	no	0.803	0.814	0.404	3e-47
Q15006	297	ER membrane protein compl	yes	no	0.803	0.814	0.4	7e-47
Q5R882	297	ER membrane protein compl	yes	no	0.803	0.814	0.4	8e-47
B0BNG0	297	ER membrane protein compl	yes	no	0.803	0.814	0.4	1e-46
Q5E993	297	ER membrane protein compl	yes	no	0.803	0.814	0.4	2e-46
Q86K48	322	ER membrane protein compl	yes	no	0.767	0.717	0.334	6e-30

>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 158/251 (62%), Gaps = 3/251 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP+
Sbjct: 28  RNSEQIVDVGEELINEHA--SKLGDDIWIIYEQVMIAALDCSRDDLAWSCLQELKRQFPD 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+ LEA   + +A K Y S+L+D+P +    KR++ I +AQG    AI  LN
Sbjct: 86  SHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW EL+E+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ LA+KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  + AAA +
Sbjct: 206 ENLELARKYFAQALKLN-NRNMRALFGLYMSASHIAASPKVSAKVKKDNVKYAAWAAAQI 264

Query: 277 EKDYKQRAPAK 287
            + Y+     K
Sbjct: 265 SRAYQMAGRGK 275

Danio rerio (taxid: 7955)

>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a PE=2 SV=1

 Score =  194 bits (492), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 153/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY++  + L    N +ALFG+ + S  IA   K   K  K++ +  + AA+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWAASQI 264

Query: 277 EKDYK 281
           +K Y+
Sbjct: 265 KKAYQ 269

Xenopus laevis (taxid: 8355)

>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 152/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY++  + L    N +ALFG+ + S  IA   K   K  K++ +  + A + +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWATSQI 264

Query: 277 EKDYK 281
           +K Y+
Sbjct: 265 KKAYQ 269

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 153/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG DVW +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVDVGEELINEHA--SKLGDDVWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY++  + L    + +ALFG+ + S  IA   K   K  K++ +  + A + +
Sbjct: 206 ENLELSRKYFSQALKL-NNHSMRALFGLYMSSVHIASNPKASAKMKKDNVKYATWATSQI 264

Query: 277 EKDYK 281
           +K Y+
Sbjct: 265 KKAYQ 269

Xenopus laevis (taxid: 8355)

>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2 SV=1

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 153/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA  +
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFGLYMSASHIASNPKASAKMKKDNIKYASWAANQI 264

Query: 277 EKDYK 281
            + Y+
Sbjct: 265 NRAYQ 269

Mus musculus (taxid: 10090)

>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELINEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query: 277 EKDYK 281
            + Y+
Sbjct: 265 NRAYQ 269

Homo sapiens (taxid: 9606)

>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELINEYG--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct: 206 ENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query: 277 EKDYK 281
            + Y+
Sbjct: 265 NRAYQ 269

Pongo abelii (taxid: 9601)

>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2 PE=2 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 151/245 (61%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++      AA  +
Sbjct: 206 ENLELSRKYFAQALKLN-NRNMRALFGLYMSASHIASNPKASAKMKKDNIRYAGWAANQI 264

Query: 277 EKDYK 281
            + Y+
Sbjct: 265 NRAYQ 269

Rattus norvegicus (taxid: 10116)

>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 3/245 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++++    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELISEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPYNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
           +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query: 277 EKDYK 281
            K Y+
Sbjct: 265 NKAYQ 269

Bos taurus (taxid: 9913)

>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum GN=emc2 PE=3 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 11/242 (4%)

Query: 1   MVTKTEETQLNRLENQVDNGG-GGAW----EYLCLVKKLKVRRPDKVLRHGLSILND--P 53
           M+T ++  ++NR E  + N G    W    + L  ++K K+R+ + V ++GL ++     
Sbjct: 6   MLTSSDSIEINRYEEGIRNSGRSFNWVLVRDTLRFLRKSKIRKSNLVSKYGLKLVTQYFN 65

Query: 54  KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKG 112
           K     G D     EQV +A +DC      K   + L+ +F  +S RV R+  + LE+  
Sbjct: 66  KLEDQEGYDT---IEQVIVACLDCGDHTNPKKLFEQLKSKFGKDSVRVQRIHALCLESNN 122

Query: 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172
             AEA + + S+L+  P D +  KR+VAI K QGN   AI+ LN YL+ +M D +AW EL
Sbjct: 123 QLAEALQIFESILKKYPSDALSMKRQVAIFKGQGNLSKAIQVLNAYLQIYMCDLEAWLEL 182

Query: 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
           +  ++S   Y  A +C EE++L+ P   ++++ YA+ LY LGG +N   A +YY   ++L
Sbjct: 183 SSFHISYLSYSTALYCLEEVLLNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALEL 242

Query: 233 TG 234
             
Sbjct: 243 NS 244

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
225451281	300	PREDICTED: tetratricopeptide repeat prot	0.993	0.996	0.859	1e-149
224130686	302	predicted protein [Populus trichocarpa]	1.0	0.996	0.823	1e-147
356505931	302	PREDICTED: tetratricopeptide repeat prot	1.0	0.996	0.823	1e-146
418731088	300	O-linked GlcNAc transferase [Solanum tub	0.993	0.996	0.816	1e-145
224125612	302	predicted protein [Populus trichocarpa]	1.0	0.996	0.817	1e-145
255637779	302	unknown [Glycine max]	1.0	0.996	0.820	1e-145
255542336	302	conserved hypothetical protein [Ricinus	1.0	0.996	0.833	1e-144
363807355	302	uncharacterized protein LOC100796542 [Gl	1.0	0.996	0.817	1e-143
449442911	303	PREDICTED: ER membrane protein complex s	1.0	0.993	0.811	1e-143
388505014	302	unknown [Medicago truncatula]	1.0	0.996	0.810	1e-142

>gi|225451281|ref|XP_002277809.1| PREDICTED: tetratricopeptide repeat protein 35 [Vitis vinifera] gi|298204889|emb|CBI34196.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/299 (85%), Positives = 278/299 (92%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEET+LNRLE QVDNGGGGAWEYLCLV+KLKVRR DKVL+HGLSILNDPKKRS LG
Sbjct: 1   MVTKTEETELNRLEIQVDNGGGGAWEYLCLVRKLKVRRSDKVLKHGLSILNDPKKRSNLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQCLDVAKDCIKVLQK+FPESKRVGRLEG+LLE+KG WAEAEKA
Sbjct: 61  PEEWTLYEQVAVAAMDCQCLDVAKDCIKVLQKRFPESKRVGRLEGMLLESKGSWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLE+NP D V+ KRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQ
Sbjct: 121 YSSLLEENPFDQVVLKRRVAMAKAQGNMSGAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAA+CYEELILSQPT+PLYHLAYA+VLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAYCYEELILSQPTLPLYHLAYAEVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLK 299
           LFGICLC+SAI QLTKGRNKE+KESPEL SLAA ALEK YKQRAP KL LL SALK LK
Sbjct: 241 LFGICLCTSAIGQLTKGRNKEEKESPELHSLAATALEKIYKQRAPTKLPLLNSALKGLK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130686|ref|XP_002328351.1| predicted protein [Populus trichocarpa] gi|222838066|gb|EEE76431.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/301 (82%), Positives = 277/301 (92%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EET+LNRLE+QVDNGGGGAWEYLCLV+KLKVRR DKVL+HGLSILND KKRS+LG
Sbjct: 1   MVTKSEETELNRLESQVDNGGGGAWEYLCLVRKLKVRRSDKVLKHGLSILNDSKKRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYE+V+IAAMDCQ L+VAKDC+ VL+K+FPESKRVGRLE +LLEAKG W EAEKA
Sbjct: 61  SEEWTLYEEVAIAAMDCQSLEVAKDCVNVLRKKFPESKRVGRLEALLLEAKGSWGEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNP D V+HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQ
Sbjct: 121 YSSLLEDNPFDQVVHKRRVALAKAQGNLSGAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPL+HLAYADVLYTLGG++N+  A+KYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLFHLAYADVLYTLGGLENLQTARKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SAIAQ +KGRNKEDK+ P+LQSLA AALEK+YKQRA  KL +LTSA KSLK 
Sbjct: 241 LFGICLCTSAIAQFSKGRNKEDKDCPDLQSLATAALEKEYKQRASGKLTVLTSAFKSLKV 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505931|ref|XP_003521742.1| PREDICTED: tetratricopeptide repeat protein 35-A-like [Glycine max]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/301 (82%), Positives = 274/301 (91%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EETQL+RLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILNDPK RS+LG
Sbjct: 1   MVTKSEETQLSRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDPKHRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVLQK+FPESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLQKRFPESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQG    AI+WLNKYLETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGKISVAIDWLNKYLETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SA+ QLTKG++KEDKE  +LQSLAA  LEKDYKQRAP KL  LT+ALKSL  
Sbjct: 241 LFGICLCTSAVTQLTKGKSKEDKEGSQLQSLAAKVLEKDYKQRAPDKLPQLTTALKSLTL 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731088|gb|AFX67010.1| O-linked GlcNAc transferase [Solanum tuberosum]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/299 (81%), Positives = 276/299 (92%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVT+TEE ++NRLENQV+NGGGG WEYLCLV KLK+RR D VL+HGLSILND KKRSALG
Sbjct: 1   MVTRTEEEEVNRLENQVENGGGGVWEYLCLVHKLKLRRSDMVLKHGLSILNDSKKRSALG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQ +DVAKDCIKVLQ++FP SKRVGRLE +LLEA+GLW+EAE A
Sbjct: 61  PEEWTLYEQVAVAAMDCQSIDVAKDCIKVLQRKFPGSKRVGRLEAMLLEARGLWSEAENA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLE+NP D V+HKRRVA+AKAQGN   AI+WLNKYL+ FMADH+AWRELAEIYVSLQ
Sbjct: 121 YSSLLEENPFDQVVHKRRVAMAKAQGNTSAAIDWLNKYLDLFMADHEAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLK 299
           LFGICLC+SAI QLTKGRNKEDKESPELQSL+A ALEKDYKQRAP++L +L+S L+SLK
Sbjct: 241 LFGICLCTSAIGQLTKGRNKEDKESPELQSLSAMALEKDYKQRAPSRLSVLSSTLRSLK 299

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125612|ref|XP_002319632.1| predicted protein [Populus trichocarpa] gi|222858008|gb|EEE95555.1| predicted protein [Populus trichocarpa]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/301 (81%), Positives = 273/301 (90%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLE+QVDNGGGGAWEYLC+V+KLKVRR  KVL+HGL ILND KKRS+LG
Sbjct: 1   MVTKTEETQLNRLESQVDNGGGGAWEYLCMVRKLKVRRSVKVLKHGLLILNDSKKRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQ L+VAKDC+  LQK+FPESKRVGRLE +L EAKG W EAEKA
Sbjct: 61  PEEWTLYEQVAVAAMDCQSLEVAKDCVNALQKKFPESKRVGRLEAMLFEAKGSWGEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNP D V+HKRRVA+AKAQGN   AI+ LNKYLETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YSSLLEDNPFDQVVHKRRVALAKAQGNLTGAIDLLNKYLETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQ TVPLYHLAYADVLYTLGG++N+L AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQHTVPLYHLAYADVLYTLGGIENLLTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SAIAQL+KGRNKEDK+SP+LQSLA AALEK+YKQRA  KL + TS  KSLK 
Sbjct: 241 LFGICLCTSAIAQLSKGRNKEDKDSPDLQSLATAALEKEYKQRASDKLSVFTSGFKSLKV 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637779|gb|ACU19211.1| unknown [Glycine max]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/301 (82%), Positives = 273/301 (90%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EETQL+RLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILNDPK RS+LG
Sbjct: 1   MVTKSEETQLSRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDPKHRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVLQK+FPESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLQKRFPESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQG    AI+WLNKY ETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGKISVAIDWLNKYPETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SA+ QLTKG++KEDKE  +LQSLAA  LEKDYKQRAP KL  LT+ALKSL  
Sbjct: 241 LFGICLCTSAVTQLTKGKSKEDKEGSQLQSLAAKVLEKDYKQRAPDKLPQLTTALKSLTL 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542336|ref|XP_002512231.1| conserved hypothetical protein [Ricinus communis] gi|223548192|gb|EEF49683.1| conserved hypothetical protein [Ricinus communis]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/301 (83%), Positives = 275/301 (91%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLE+QV++GGGGAWEYL LV+KLKVRR DKVL++GLSILNDPKKRS LG
Sbjct: 1   MVTKTEETQLNRLESQVEHGGGGAWEYLSLVRKLKVRRSDKVLKYGLSILNDPKKRSGLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYEQV+IAAMDCQ LDVAKDCI VLQK+FPESKRVGRLEG+LLEAKG WAEAEKA
Sbjct: 61  SEEWTLYEQVAIAAMDCQSLDVAKDCITVLQKRFPESKRVGRLEGMLLEAKGSWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDN LD V+ KRRVA+AKAQGN   AIE LNKYLE FMAD DAWRELAE+YVSLQ
Sbjct: 121 YASLLEDNQLDQVIFKRRVAVAKAQGNVSGAIELLNKYLEIFMADSDAWRELAEMYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGG NT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQAAKKYYSSTIDLTGGMNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFG+CLC+SAIAQLTKGRNKEDK+SPELQSLA AALEK+YKQRA  KL +L SALKSLK 
Sbjct: 241 LFGVCLCTSAIAQLTKGRNKEDKDSPELQSLATAALEKEYKQRASNKLPVLASALKSLKI 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807355|ref|NP_001242375.1| uncharacterized protein LOC100796542 [Glycine max] gi|255645329|gb|ACU23161.1| unknown [Glycine max]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/301 (81%), Positives = 273/301 (90%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILND K+RS+LG
Sbjct: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDLKQRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVL+K+F ESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLRKRFLESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQGN   AI+WLNKYLETFMADH+AWR LAEIYVSLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGNISVAIDWLNKYLETFMADHEAWRGLAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELIL+QPTVPL+HLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILTQPTVPLFHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SAI QLTKG++KEDKE  +LQSLAA  LEKDYKQRAP KL  LT+ALKSL  
Sbjct: 241 LFGICLCTSAITQLTKGKSKEDKEGSQLQSLAAKVLEKDYKQRAPDKLPQLTTALKSLTL 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442911|ref|XP_004139224.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus] gi|449482954|ref|XP_004156453.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/302 (81%), Positives = 274/302 (90%), Gaps = 1/302 (0%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MV+K EE +LNRLE QVDNGGGGAW+YLCL++KLKVRR  KVL +GLSILND +KRS LG
Sbjct: 1   MVSKAEEAELNRLETQVDNGGGGAWDYLCLIRKLKVRRSHKVLNYGLSILNDSRKRSGLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYEQV+IAA+DCQ +DVAKDCIKVLQK+FP+SKRVGRLE +LLEAKGLWAEAEKA
Sbjct: 61  QEEWTLYEQVAIAALDCQAIDVAKDCIKVLQKKFPQSKRVGRLEAMLLEAKGLWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLE+NP D ++HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAE+Y+SLQ
Sbjct: 121 YASLLEENPCDQIVHKRRVALAKAQGNIAGAIEWLNKYLETFMADHDAWRELAELYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQA FCYEELILSQPTVPL+HLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAVFCYEELILSQPTVPLFHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESP-ELQSLAAAALEKDYKQRAPAKLLLLTSALKSLK 299
           LFGICLC+SAIAQLT+GRNKEDKE P ELQSLAA ALEKDYKQRAP KL LL+S LK LK
Sbjct: 241 LFGICLCTSAIAQLTRGRNKEDKEGPAELQSLAATALEKDYKQRAPHKLSLLSSVLKGLK 300

Query: 300 TS 301
            S
Sbjct: 301 VS 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505014|gb|AFK40573.1| unknown [Medicago truncatula]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/301 (81%), Positives = 269/301 (89%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEE++L  LE QVDNGGGGAWEYL LV+KLKVRR DKVL+HGLSILND K RS LG
Sbjct: 1   MVTKTEESELKNLEIQVDNGGGGAWEYLSLVRKLKVRRSDKVLKHGLSILNDSKLRSKLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVA+DC K L+K+F ESKRVGRLE +LLEAKG W EAEKA
Sbjct: 61  ADEWTLYEQVAVAAMDCQCLDVAQDCTKALRKRFSESKRVGRLEAMLLEAKGSWEEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNPLD ++HKRRVA+AKAQGN   AIEWLNKYLE FMADHDAWRELAEIY SLQ
Sbjct: 121 YSSLLEDNPLDQIIHKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYTSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEE+IL+QPTVPLYHLAYADVLYT+GG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEEVILAQPTVPLYHLAYADVLYTIGGLENVQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300
           LFGICLC+SAIAQLTKG+NKEDKE  +LQSLAA ALE+DYKQRAP KL  LT+ALKSL  
Sbjct: 241 LFGICLCTSAIAQLTKGKNKEDKEGSQLQSLAAKALERDYKQRAPDKLPQLTTALKSLTL 300

Query: 301 S 301
           S
Sbjct: 301 S 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2114855	303	AT3G04830 [Arabidopsis thalian	0.946	0.940	0.794	4.4e-123
TAIR|locus:2147555	316	AT5G28220 [Arabidopsis thalian	0.946	0.901	0.791	3.6e-121
ZFIN|ZDB-GENE-040625-82	297	emc2 "ER membrane protein comp	0.803	0.814	0.412	1.6e-47
UNIPROTKB|Q6INS3	297	emc2-a "ER membrane protein co	0.803	0.814	0.408	3e-46
UNIPROTKB|Q5M7J9	297	emc2 "ER membrane protein comp	0.803	0.814	0.404	7.9e-46
UNIPROTKB|Q8AVU9	297	emc2-b "ER membrane protein co	0.803	0.814	0.4	3.4e-45
MGI|MGI:1913986	297	Emc2 "ER membrane protein comp	0.803	0.814	0.404	9.1e-45
UNIPROTKB|Q15006	297	EMC2 "ER membrane protein comp	0.803	0.814	0.4	1.2e-44
UNIPROTKB|F1S1G1	297	EMC2 "Uncharacterized protein"	0.803	0.814	0.4	1.2e-44
UNIPROTKB|Q5R882	297	EMC2 "ER membrane protein comp	0.803	0.814	0.4	1.5e-44

TAIR|locus:2114855 AT3G04830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
 Identities = 228/287 (79%), Positives = 263/287 (91%)

Query:     1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
             MVTKTEE QLN+LENQV+NGGGG WEYLCLV+KLKVRR + VL+HGLSILND  KRSALG
Sbjct:     1 MVTKTEEIQLNQLENQVENGGGGVWEYLCLVRKLKVRRSEIVLKHGLSILNDSGKRSALG 60

Query:    61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
             PD WTLYEQV+IAAMDCQ L VA++CIKVL+K+FPESKRVG+LE +LLEAKG+W EAEKA
Sbjct:    61 PDEWTLYEQVAIAAMDCQSLGVAQNCIKVLKKKFPESKRVGKLEALLLEAKGMWEEAEKA 120

Query:   121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
             Y+SLLEDNPLD V+HKR+VA+AKAQG    AIE LNKYLE FMADHDAWRELAEIYVSLQ
Sbjct:   121 YTSLLEDNPLDQVIHKRKVAMAKAQGKSSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQ 180

Query:   181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
             MYKQAAFCYEELIL+QPT+PLYHLAYADVLYT+GG++N++ A+KYYA+TIDLTGGK+T+A
Sbjct:   181 MYKQAAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRA 240

Query:   241 LFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAP 285
             L GICLC SAIAQ++KGRNKEDK+  +PELQSLAA ALE++YKQ+AP
Sbjct:   241 LLGICLCGSAIAQISKGRNKEDKDMAAPELQSLAATALEREYKQKAP 287

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2147555 AT5G28220 [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 228/288 (79%), Positives = 257/288 (89%)

Query:     1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
             MVTKTEE QLN+LE QVDNGGGG WEYLCLV+ LKVRR +KVL+HG SILND KKRSALG
Sbjct:    14 MVTKTEEKQLNQLEIQVDNGGGGTWEYLCLVRNLKVRRSEKVLKHGSSILNDQKKRSALG 73

Query:    61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
             PD WTL EQV+IAAMDCQCL VA+ CIK LQ +FP SKRVGRLE +LLEAKGLW EAE+A
Sbjct:    74 PDEWTLNEQVAIAAMDCQCLGVAQSCIKALQTKFPGSKRVGRLEALLLEAKGLWGEAEEA 133

Query:   121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
             Y+SLLEDNPLD  +HKRRVAI+KA G    AIE LNKYLE FMADHDAWRELAE+Y+SLQ
Sbjct:   134 YASLLEDNPLDQAIHKRRVAISKALGKPSIAIELLNKYLELFMADHDAWRELAELYLSLQ 193

Query:   181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
             MYKQAAFCYEELILSQPTVPLYHLAYA+VLYT+GGV+NI+ A+KYYA+T+DLTGGKNT+A
Sbjct:   194 MYKQAAFCYEELILSQPTVPLYHLAYAEVLYTIGGVENIISARKYYAATVDLTGGKNTRA 253

Query:   241 LFGICLCSSAIAQLTKGRNKEDKES---PELQSLAAAALEKDYKQRAP 285
             L GICLC+SAIAQL+KGRNKEDK++   PEL SLAAAA+EK+YKQ+AP
Sbjct:   254 LLGICLCASAIAQLSKGRNKEDKDATAAPELHSLAAAAVEKEYKQKAP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040625-82 emc2 "ER membrane protein complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 101/245 (41%), Positives = 157/245 (64%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP+
Sbjct:    28 RNSEQIVDVGEELINE--HASKLGDDIWIIYEQVMIAALDCSRDDLAWSCLQELKRQFPD 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+ LEA   + +A K Y S+L+D+P +    KR++ I +AQG    AI  LN
Sbjct:    86 SHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW EL+E+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ LA+KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  + AAA +
Sbjct:   206 ENLELARKYFAQALKLNN-RNMRALFGLYMSASHIAASPKVSAKVKKDNVKYAAWAAAQI 264

Query:   277 EKDYK 281
              + Y+
Sbjct:   265 SRAYQ 269

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6INS3 emc2-a "ER membrane protein complex subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 100/245 (40%), Positives = 153/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEHVIEVGEELINE--HASKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY++  + L    N +ALFG+ + S  IA   K   K  K++ +  + AA+ +
Sbjct:   206 ENLELSRKYFSQALKLNN-HNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWAASQI 264

Query:   277 EKDYK 281
             +K Y+
Sbjct:   265 KKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q5M7J9 emc2 "ER membrane protein complex subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 99/245 (40%), Positives = 152/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEHVIEVGEELINE--HASKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY++  + L    N +ALFG+ + S  IA   K   K  K++ +  + A + +
Sbjct:   206 ENLELSRKYFSQALKLNN-HNMRALFGLYISSVHIASNPKASAKMKKDNVKYATWATSQI 264

Query:   277 EKDYK 281
             +K Y+
Sbjct:   265 KKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q8AVU9 emc2-b "ER membrane protein complex subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 98/245 (40%), Positives = 153/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG DVW +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVDVGEELINE--HASKLGDDVWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY++  + L    + +ALFG+ + S  IA   K   K  K++ +  + A + +
Sbjct:   206 ENLELSRKYFSQALKLNN-HSMRALFGLYMSSVHIASNPKASAKMKKDNVKYATWATSQI 264

Query:   277 EKDYK 281
             +K Y+
Sbjct:   265 KKAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

MGI|MGI:1913986 Emc2 "ER membrane protein complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 99/245 (40%), Positives = 153/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIMEVGEELIND--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA  +
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAKMKKDNIKYASWAANQI 264

Query:   277 EKDYK 281
              + Y+
Sbjct:   265 NRAYQ 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=ISO

UNIPROTKB|Q15006 EMC2 "ER membrane protein complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 98/245 (40%), Positives = 154/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVEVGEELINE--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query:   277 EKDYK 281
              + Y+
Sbjct:   265 NRAYQ 269

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1S1G1 EMC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 98/245 (40%), Positives = 154/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVEVGEELINE--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDALQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query:   277 EKDYK 281
              + Y+
Sbjct:   265 NRAYQ 269

GO:0072546 "ER membrane protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5R882 EMC2 "ER membrane protein complex subunit 2" [Pongo abelii (taxid:9601)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 98/245 (40%), Positives = 154/245 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVEVGEELINE--YGSKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAAL 276
             +N+ L++KY+A  + L   +N +ALFG+ + +S IA   K   K  K++ +  S AA+ +
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQI 264

Query:   277 EKDYK 281
              + Y+
Sbjct:   265 NRAYQ 269

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M7J9	EMC2_XENTR	No assigned EC number	0.4040	0.8039	0.8148	yes	no
Q5R882	EMC2_PONAB	No assigned EC number	0.4	0.8039	0.8148	yes	no
B0BNG0	EMC2_RAT	No assigned EC number	0.4	0.8039	0.8148	yes	no
Q6TGY8	EMC2_DANRE	No assigned EC number	0.4063	0.8239	0.8350	yes	no
Q15006	EMC2_HUMAN	No assigned EC number	0.4	0.8039	0.8148	yes	no
Q5E993	EMC2_BOVIN	No assigned EC number	0.4	0.8039	0.8148	yes	no
Q9CRD2	EMC2_MOUSE	No assigned EC number	0.4040	0.8039	0.8148	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200
           +    G++  A+E+  K LE    + DA+  LA  Y  L  Y++A   YE+ +   P   
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68

Query: 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             +       Y LG       A + Y   ++L
Sbjct: 69  KAYYNLGLAYYKLG---KYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 24/90 (26%), Positives = 37/90 (41%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
            G L    G + EA + Y   LE +P +   +    A     G +  A+E   K LE   
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELI 193
            +  A+  L   Y  L  Y++A   YE+ +
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 110 AKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 167
             G    A+K+Y   L  +P  L   L   ++A+A  +  F  A   +++ L     + D
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA--ENRFDEARALIDEVLTADPGNVD 194

Query: 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
           A     ++ +SL   + A   Y + I  +P      LA A +L   G  +
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
           +A + L      L  Y +A   YE+ +   P     +   A     LG   +   A +  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLG--KDYEEALEDL 61

Query: 227 ASTIDL 232
              ++L
Sbjct: 62  EKALEL 67

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG3060	289	consensus Uncharacterized conserved protein [Funct	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
KOG1125	579	consensus TPR repeat-containing protein [General f	99.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.88
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.88
PRK12370	553	invasion protein regulator; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK12370	553	invasion protein regulator; Provisional	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.85
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PLN02789	320	farnesyltranstransferase	99.82
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.81
KOG1125	579	consensus TPR repeat-containing protein [General f	99.81
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
PLN02789	320	farnesyltranstransferase	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.75
KOG1129	478	consensus TPR repeat-containing protein [General f	99.75
KOG1129	478	consensus TPR repeat-containing protein [General f	99.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.72
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
KOG2003	840	consensus TPR repeat-containing protein [General f	99.69
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.68
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.67
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.66
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.66
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.66
KOG2003	840	consensus TPR repeat-containing protein [General f	99.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.65
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.64
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.63
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.62
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.62
KOG0553	304	consensus TPR repeat-containing protein [General f	99.61
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.59
KOG0553	304	consensus TPR repeat-containing protein [General f	99.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.58
KOG2076	895	consensus RNA polymerase III transcription factor	99.57
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
PRK14574	822	hmsH outer membrane protein; Provisional	99.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.52
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.46
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.4
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.36
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.36
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.36
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.35
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.34
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.33
PRK11906	458	transcriptional regulator; Provisional	99.33
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.33
PLN03218	1060	maturation of RBCL 1; Provisional	99.33
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.32
PLN03218	1060	maturation of RBCL 1; Provisional	99.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.3
PRK15331	165	chaperone protein SicA; Provisional	99.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.28
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.26
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.26
PRK15331	165	chaperone protein SicA; Provisional	99.23
PRK10803	263	tol-pal system protein YbgF; Provisional	99.23
PRK11906	458	transcriptional regulator; Provisional	99.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.21
PRK10803	263	tol-pal system protein YbgF; Provisional	99.21
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.21
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.2
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.2
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.19
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.18
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.17
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.14
PF12688	120	TPR_5: Tetratrico peptide repeat	99.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.12
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
PLN03077	857	Protein ECB2; Provisional	99.1
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.08
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.05
PLN03077	857	Protein ECB2; Provisional	99.03
PF13371	73	TPR_9: Tetratricopeptide repeat	99.03
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.01
KOG4234	271	consensus TPR repeat-containing protein [General f	99.01
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.99
PF13512	142	TPR_18: Tetratricopeptide repeat	98.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.98
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.97
PF12688	120	TPR_5: Tetratrico peptide repeat	98.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.93
PF13371	73	TPR_9: Tetratricopeptide repeat	98.92
PF13512	142	TPR_18: Tetratricopeptide repeat	98.92
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.91
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.91
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.87
KOG4234	271	consensus TPR repeat-containing protein [General f	98.87
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.87
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.85
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.83
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.8
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.73
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.71
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.68
PRK04841	903	transcriptional regulator MalT; Provisional	98.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.64
KOG1586	288	consensus Protein required for fusion of vesicles	98.61
KOG4555	175	consensus TPR repeat-containing protein [Function	98.59
KOG4555	175	consensus TPR repeat-containing protein [Function	98.57
PRK04841	903	transcriptional regulator MalT; Provisional	98.56
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.56
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.56
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.55
PF13428	44	TPR_14: Tetratricopeptide repeat	98.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.5
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.49
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.46
PF13428	44	TPR_14: Tetratricopeptide repeat	98.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.35
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.33
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.32
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG2471	696	consensus TPR repeat-containing protein [General f	98.29
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.27
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.21
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.19
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.17
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.15
KOG1585	308	consensus Protein required for fusion of vesicles	98.14
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.13
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.13
KOG2471	696	consensus TPR repeat-containing protein [General f	98.09
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.02
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.0
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.93
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.9
KOG1586	288	consensus Protein required for fusion of vesicles	97.89
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.88
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.88
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.85
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.81
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.76
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.71
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.7
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.7
KOG1585	308	consensus Protein required for fusion of vesicles	97.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.69
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.66
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.63
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.56
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.5
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.48
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.47
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.45
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.45
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.41
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.38
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.33
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.33
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.32
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.31
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.26
PRK10941	269	hypothetical protein; Provisional	97.17
KOG1258	577	consensus mRNA processing protein [RNA processing	97.17
PRK10941	269	hypothetical protein; Provisional	97.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.1
KOG0529	421	consensus Protein geranylgeranyltransferase type I	97.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.08
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.03
KOG1258	577	consensus mRNA processing protein [RNA processing	97.02
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.02
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.97
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.91
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.89
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.88
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.87
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.86
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.84
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.83
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.72
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.6
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.56
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.49
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.47
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.4
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.35
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.33
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.19
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.09
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.04
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.03
KOG1310	758	consensus WD40 repeat protein [General function pr	96.02
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.94
KOG1310	758	consensus WD40 repeat protein [General function pr	95.94
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.92
KOG3364	149	consensus Membrane protein involved in organellar	95.84
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.73
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.73
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.69
KOG3364	149	consensus Membrane protein involved in organellar	95.56
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.54
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.53
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.48
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.43
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.33
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.27
COG2912	269	Uncharacterized conserved protein [Function unknow	95.27
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.27
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.19
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.94
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.83
COG2912	269	Uncharacterized conserved protein [Function unknow	94.78
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.75
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.61
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.57
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.5
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.45
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.38
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.25
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	94.19
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.87
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.85
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.8
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.76
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.75
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.74
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.74
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.58
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.56
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	93.5
COG4941	415	Predicted RNA polymerase sigma factor containing a	93.46
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.29
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.25
COG3947	361	Response regulator containing CheY-like receiver a	93.25
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.09
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.06
KOG4014	248	consensus Uncharacterized conserved protein (conta	93.04
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.9
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.76
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.45
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.1
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.85
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.72
COG3947	361	Response regulator containing CheY-like receiver a	91.65
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.59
KOG4014	248	consensus Uncharacterized conserved protein (conta	91.36
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.34
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.05
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	91.01
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.96
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.73
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	90.21
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.6
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.5
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.45
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.63
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	87.72
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.1
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	87.04
PF12854	34	PPR_1: PPR repeat	87.02
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.89
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	86.89
PF12854	34	PPR_1: PPR repeat	86.75
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	86.53
PF13041	50	PPR_2: PPR repeat family	86.16
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	86.16
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.6
KOG3783	546	consensus Uncharacterized conserved protein [Funct	85.41
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.36
KOG2581	493	consensus 26S proteasome regulatory complex, subun	85.14
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	84.95
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.86
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.44
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	84.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.21
KOG0687	393	consensus 26S proteasome regulatory complex, subun	84.18
PF13041	50	PPR_2: PPR repeat family	83.83
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.57
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.46
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.31
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	82.78
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.74
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.96
PHA02537	230	M terminase endonuclease subunit; Provisional	81.61
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	81.1
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	80.27

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.8e-36  Score=230.48  Aligned_cols=286  Identities=49%  Similarity=0.773  Sum_probs=268.8

Q ss_pred             CcchhHHHHHhHHHhhhhcCCccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCCh
Q 022205            1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCL   80 (301)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   80 (301)
                      |||+.+.-..++++.+.+           .||+...++++++++++..++...... .++|+.|.++.++.++.+..|+.
T Consensus         1 ~~t~~~~~~~~~l~~~~~-----------~wr~~~~rnseevv~l~~~~~~~~k~~-~~g~e~w~l~EqV~IAAld~~~~   68 (289)
T KOG3060|consen    1 MVTELEDVSWEELRDQMR-----------KWREETVRNSEEVVQLGSEVLNYSKSG-ALGDEIWTLYEQVFIAALDTGRD   68 (289)
T ss_pred             CcchHHHHHHHHHHHHHH-----------HHHhccccCHHHHHHHHHHHHHHhhhc-ccCchHHHHHHHHHHHHHHhcch
Confidence            789999999998888644           789999999999999999999773333 68999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      +.|..+++++.+.+|++.++..+.|..+...|++++|+++|+..++.+|.+..++.+...+...+|+..+|++.+...++
T Consensus        69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~  148 (289)
T KOG3060|consen   69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD  148 (289)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (301)
Q Consensus       161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (301)
                      .+++|+++|..++.+|+..|+|++|.-|+++++-+.|.++..+..+|.+++-.|-.+|+.-|.++|.++++++|. +.++
T Consensus       149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ra  227 (289)
T KOG3060|consen  149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRA  227 (289)
T ss_pred             HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHH
Confidence            999999999999999999999999999999999999999999999999999999888899999999999999995 9999


Q ss_pred             hhhHHHHHHHHHhhhccCCccccc--chHHHHHHHHHHHHHHHhhCChhhhHHHHHHhhccC
Q 022205          241 LFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT  300 (301)
Q Consensus       241 ~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  300 (301)
                      ++|+.+|...+.+..++..+.+++  ..++.+++...+.++| +..+.+..-|...+..+||
T Consensus       228 l~GI~lc~~~la~~sk~~~k~~K~~a~~~l~~~aas~l~r~~-q~s~~~~d~i~~~l~~lKi  288 (289)
T KOG3060|consen  228 LFGIYLCGSALAQISKAELKRKKDVAAPDLISLAASQLERIS-QKSKNKLDLITAALENLKI  288 (289)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHhHHHHHHHHH-HhccchhhHHHHHHHHhcc
Confidence            999999999999999988888888  8999999999999999 6666777778888888876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.95  E-value=2e-27  Score=204.05  Aligned_cols=227  Identities=18%  Similarity=0.160  Sum_probs=209.5

Q ss_pred             CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205           55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (301)
Q Consensus        55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  134 (301)
                      ++.+++|....+|.++|.++-..+.++.|+.++.+++...|.++.++-.+|.+|..+|..+-|+..|+++++..|..+++
T Consensus       243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A  322 (966)
T KOG4626|consen  243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA  322 (966)
T ss_pred             HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      +.++|..+...|+..+|..+|++++.++|+++++.++||.+|..+|.++.|...|.++++..|....++.++|.+|..+|
T Consensus       323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg  402 (966)
T KOG4626|consen  323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG  402 (966)
T ss_pred             HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--chHHHHHHHHHHHHHHHhhCC
Q 022205          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  285 (301)
                      +   +++|+.+|+.+++++|. ...++.+++..+..+++...+.....+.  ++.-...|-.+|.-+|+..|+
T Consensus       403 n---l~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn  471 (966)
T KOG4626|consen  403 N---LDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN  471 (966)
T ss_pred             c---HHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence            9   99999999999999995 9999999999999999877666555544  344455566678889988877

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=5.5e-25  Score=189.20  Aligned_cols=193  Identities=23%  Similarity=0.261  Sum_probs=173.5

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      ..+.|..+.+|.++|.++-+.|+..+|..++.+++...|..+++...+|.++..+|.+++|...|.+++...|....++.
T Consensus       313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n  392 (966)
T KOG4626|consen  313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN  392 (966)
T ss_pred             HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence            34478888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                      ++|.+|..+|++++|+.+|++++++.|..++++.++|..|-.+|+.+.|+.+|.+++.++|...+++.++|.+|...|+ 
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn-  471 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN-  471 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                        ..+|+..|+.+++++|+ ...++-++..|...+.+
T Consensus       472 --i~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  472 --IPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             --cHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhc
Confidence              99999999999999996 88888888888887776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=1.4e-21  Score=180.42  Aligned_cols=212  Identities=13%  Similarity=0.082  Sum_probs=163.5

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      .++.++++......+..       +|.....|..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus       344 ~g~~~eA~~~~~kal~l-------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       344 KGKHLEALADLSKSIEL-------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA  416 (615)
T ss_pred             cCCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            44555555555555544       66777778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      +|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.+
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCHHH------HHHHHHHHH-HcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          196 QPTVPLY------HLAYADVLY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       196 ~p~~~~~------~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      +|.+...      +...+.+++ ..|+   +++|...|++++.++|+ +..++..++.++...|+...+.
T Consensus       497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi  562 (615)
T TIGR00990       497 EKETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEAL  562 (615)
T ss_pred             CCccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence            7764322      222233333 3577   88888888888888885 7777788888888777755443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=2e-21  Score=179.26  Aligned_cols=174  Identities=14%  Similarity=-0.002  Sum_probs=169.4

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      ..|....++..+|.+++..|++++|+..+++++..+|++...+..+|.++...|++++|+..|++++..+|+++.++..+
T Consensus       326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  405 (615)
T TIGR00990       326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR  405 (615)
T ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  218 (301)
                      |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+   
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---  482 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK---  482 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHhcccCC
Q 022205          219 ILLAKKYYASTIDLTGG  235 (301)
Q Consensus       219 ~~~A~~~~~~al~~~p~  235 (301)
                      +++|+..|++++.++|.
T Consensus       483 ~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       483 FDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            99999999999999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.8e-23  Score=181.42  Aligned_cols=194  Identities=16%  Similarity=0.085  Sum_probs=187.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +|..+..|..+|.++--+++++.|+++|+++++++|....++.++|.-+.....++.|..+|++++..+|.+-.+|+.+|
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            77778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.+++   +
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~---~  573 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR---Y  573 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---h
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~  257 (301)
                      ++|+..+++.-++.|+ +.-+++.++.++.++++...+
T Consensus       574 ~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  574 VEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHH
Confidence            9999999999999996 999999999999999985543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4e-23  Score=179.25  Aligned_cols=222  Identities=16%  Similarity=0.115  Sum_probs=191.8

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------------------------hCCCchhhHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------------------------QFPESKRVGRLEGILL  108 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------------------------~~p~~~~~~~~~a~~~  108 (301)
                      ..-+..++|.+|+..++|++|..+|+.+.+                                  .+|..|..|..+|.|+
T Consensus       352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcf  431 (638)
T KOG1126|consen  352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCF  431 (638)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchh
Confidence            345777999999999999999999977666                                  4466778999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (301)
Q Consensus       109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  188 (301)
                      .-+++++.|+++|++++..+|....+|..+|.-+.....+|.|..+|+.++..+|.+-.+|+.+|.+|.++++++.|.-.
T Consensus       432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--ch
Q 022205          189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SP  266 (301)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~  266 (301)
                      |++|+.++|.+......+|.++.++|+   .++|+..|++|+.++|. ++-..|.-+.++..+++..++....++-  ..
T Consensus       512 fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  512 FQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             HHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence            999999999999999999999999999   99999999999999996 8888888888888777755443222211  11


Q ss_pred             HHHHHHHHHHHHHHHhhCChhh
Q 022205          267 ELQSLAAAALEKDYKQRAPAKL  288 (301)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~  288 (301)
                      ..-..+-.-+.++|++.++.++
T Consensus       588 P~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  588 PQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             cchHHHHHHHHHHHHHHccchH
Confidence            1122233357888888887554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.7e-21  Score=166.82  Aligned_cols=184  Identities=17%  Similarity=0.137  Sum_probs=171.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  148 (301)
                      ..|..+++.|++.+|.-+|+.+++.+|.+..+|..+|.+....++=..|+..++++++.+|++..++..||..|...|.-
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence            34888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHhc-----------------------------------------C--CCHHHHHHHHHHHHHcccHHHH
Q 022205          149 PTAIEWLNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       149 ~~A~~~~~~~l~~~-----------------------------------------p--~~~~~~~~lg~~~~~~~~~~~A  185 (301)
                      .+|...+.+.+...                                         |  .++++...||.+|...|+|++|
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            88888888765432                                         4  4577888999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      +.||+.||...|+|...|..||-.+....+   ..+|+..|++|+++.|+ ++|++|++|+++.++|.+.+
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHH
Confidence            999999999999999999999999999999   99999999999999996 99999999999999997554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.88  E-value=3.2e-20  Score=150.28  Aligned_cols=188  Identities=14%  Similarity=0.137  Sum_probs=174.3

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      .....+..+|..++..|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          142 AKAQGNFPTAIEWLNKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      +...|++++|+..+++++...  |..+..+..+|.++...|++++|...+.+++..+|+++.++..+|.++...|+   +
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~  185 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y  185 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence            999999999999999999854  45677899999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ++|..++++++...|. +...++.++.++...++
T Consensus       186 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       186 KDARAYLERYQQTYNQ-TAESLWLGIRIARALGD  218 (234)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhh
Confidence            9999999999999775 77777777776666665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.9e-21  Score=159.90  Aligned_cols=212  Identities=19%  Similarity=0.094  Sum_probs=172.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  149 (301)
                      +|..+.-.++.+.|+.+|+++++.+|....+|.++|.-|..+++...|++.|++|++.+|.+-.+|+.+|++|.-++...
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            35556666788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      -|+-+|++++..-|+|+..|..||.||.+.++.++|++||.+++.....+..++..+|.+|..+++   .++|..+|.+.
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek~  492 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998889999999999999999   99999999999


Q ss_pred             hcc-------cCCCchhHhhhHHHHHHHHHhhhccCCcc--cccchHHHHHHHHHHHHHHHhhCC
Q 022205          230 IDL-------TGGKNTKALFGICLCSSAIAQLTKGRNKE--DKESPELQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       230 l~~-------~p~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~  285 (301)
                      ++.       +|. ...+..-|+.-..++.+..++..-.  .-......+.+..-++++-+.++|
T Consensus       493 v~~~~~eg~~~~~-t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~p  556 (559)
T KOG1155|consen  493 VEVSELEGEIDDE-TIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQAP  556 (559)
T ss_pred             HHHHHhhcccchH-HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence            983       443 4444444665555555544322100  001234445555666666555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.88  E-value=1.8e-20  Score=143.77  Aligned_cols=188  Identities=15%  Similarity=0.122  Sum_probs=172.3

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      ....+..++|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++.+|++.+++++.|..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          142 AKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      ++.+|++++|...|++++..  .|..+.+|.++|.|..+.|+++.|..+|+++++++|+++.....++..++..|+   +
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y  189 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---Y  189 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---c
Confidence            99999999999999999974  456678999999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      -.|..++++....-+ .....++-.......+|+
T Consensus       190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd  222 (250)
T COG3063         190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence            999999999888766 366666544444455554

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=2.5e-20  Score=169.44  Aligned_cols=192  Identities=12%  Similarity=-0.025  Sum_probs=163.1

Q ss_pred             cCCchhHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022205           58 ALGPDVWTLYEQVSIAAMDC---------QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN  128 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  128 (301)
                      .++|+...++..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+
T Consensus       289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  368 (553)
T PRK12370        289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS  368 (553)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            33788788888888766532         447899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 022205          129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYA  207 (301)
Q Consensus       129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  207 (301)
                      |+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.++..+|
T Consensus       369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la  448 (553)
T PRK12370        369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV  448 (553)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence            99999999999999999999999999999999999988777777777888899999999999988775 77888889999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .++...|+   +++|...+.+.....|. ...++..++..+...++
T Consensus       449 ~~l~~~G~---~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        449 MFLSLKGK---HELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHhCCC---HHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH
Confidence            99999999   99999999988887774 66667777766666553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=8.6e-20  Score=168.56  Aligned_cols=195  Identities=13%  Similarity=-0.022  Sum_probs=144.7

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH----  135 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----  135 (301)
                      +|+...++..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++    
T Consensus       106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~  185 (656)
T PRK15174        106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL  185 (656)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5566666666666666666666666666666666666666666666666666666666666666655555544433    


Q ss_pred             ------------------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH-
Q 022205          136 ------------------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ-  184 (301)
Q Consensus       136 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~-  184 (301)
                                                    ..++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ 
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence                                          2235566667788888888888888888888888888888888888875 


Q ss_pred             ---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          185 ---AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       185 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                         |+..|++++.++|+++.++..+|.++...|+   +++|+..+++++.++|+ +..++..++.++...++...+.
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ---NEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence               7888888888888888888888888888888   88888888888888885 7778888888887777755443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=1.1e-19  Score=167.87  Aligned_cols=211  Identities=10%  Similarity=-0.027  Sum_probs=181.6

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      .++...+..+...++..       .|..+.++..++.+.+..|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus        55 ~g~~~~A~~l~~~~l~~-------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~  127 (656)
T PRK15174         55 KDETDVGLTLLSDRVLT-------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA  127 (656)
T ss_pred             cCCcchhHHHhHHHHHh-------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence            34455555555555555       78888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH------------------------
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------------------------  171 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------------------------  171 (301)
                      +|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..                        
T Consensus       128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~  207 (656)
T PRK15174        128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF  207 (656)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998888877665533                        


Q ss_pred             ----------HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhcccCCCc
Q 022205          172 ----------LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL----AKKYYASTIDLTGGKN  237 (301)
Q Consensus       172 ----------lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~  237 (301)
                                ++.++...|++++|+..|++++..+|+++.++..+|.++...|+   +++    |+..|++++.++|+ +
T Consensus       208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~-~  283 (656)
T PRK15174        208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSD-N  283 (656)
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCC-C
Confidence                      34566677888888888888888888888888899999999998   775    78999999999996 8


Q ss_pred             hhHhhhHHHHHHHHHhhhcc
Q 022205          238 TKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       238 ~~~~~~l~~~~~~l~~~~~~  257 (301)
                      ..++..++.++...++...+
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKA  303 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHH
Confidence            88888888888877765544

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=4.7e-20  Score=167.63  Aligned_cols=216  Identities=13%  Similarity=-0.058  Sum_probs=176.7

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  148 (301)
                      +++++|+.++++++..+|+++.++..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4578999999999999999999999999887643         3489999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.++..+..++.+++..|+   +++|+..+++
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~  431 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887777888888999   9999999999


Q ss_pred             HhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccc--hHHHHHHHHHHHHHHHhhCChhhhHHHHHHh
Q 022205          229 TIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKES--PELQSLAAAALEKDYKQRAPAKLLLLTSALK  296 (301)
Q Consensus       229 al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  296 (301)
                      ++...|..+..++..++.++..+|+..++.....+..  ..-...+...+...|...+..-.+.|..+++
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~  501 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLE  501 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9988632377788889999988887665444332211  1112223334555555555433444555444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.87  E-value=5.1e-19  Score=167.68  Aligned_cols=178  Identities=13%  Similarity=-0.051  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  145 (301)
                      .+..+|.++...|++++|+.+++++++..|+.......++......|++++|+..|++++..+|+ +.++..+|.++...
T Consensus       544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l  622 (987)
T PRK09782        544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence            45677888888999999999999999988888777666666667779999999999999999996 88899999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY  225 (301)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~  225 (301)
                      |++++|+..|++++..+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|+   +++|+.+
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~  699 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHY  699 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHhcccCCCchhHhhhHHHHH
Q 022205          226 YASTIDLTGGKNTKALFGICLCS  248 (301)
Q Consensus       226 ~~~al~~~p~~~~~~~~~l~~~~  248 (301)
                      |++++.++|+ .....+..+...
T Consensus       700 l~~Al~l~P~-~a~i~~~~g~~~  721 (987)
T PRK09782        700 ARLVIDDIDN-QALITPLTPEQN  721 (987)
T ss_pred             HHHHHhcCCC-CchhhhhhhHHH
Confidence            9999999996 666665555433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.8e-19  Score=150.72  Aligned_cols=194  Identities=17%  Similarity=0.147  Sum_probs=173.6

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---h-------------------------------hHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---R-------------------------------VGRLEG  105 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~-------------------------------~~~~~a  105 (301)
                      -|....+-.+.|.+.....++++|+..|+.+.+.+|-..   .                               ....+|
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa  337 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA  337 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence            345555666778888888999999999999998888221   1                               222346


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A  185 (301)
                      +.|.-.++.++|+.+|+++++.+|....+|..+|.-|..+.+...|+..|+++++.+|.|-.+|+.||.+|.-++.+.=|
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence            66777789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205          186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~  257 (301)
                      +-+|++|++..|.|+..|..+|.||.++++   .++|+++|.+++.... .+..+++.|+..+.++.+..++
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999   9999999999999987 4889999999999999886553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=5.4e-19  Score=148.32  Aligned_cols=195  Identities=15%  Similarity=0.024  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHH
Q 022205           40 DKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE  118 (301)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~  118 (301)
                      +..+.....++..    .+++| .....|.++|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        43 e~~i~~~~~~l~~----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         43 EVILARLNQILAS----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHcc----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4444444445533    23444 457889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--
Q 022205          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--  196 (301)
Q Consensus       119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  196 (301)
                      ..|+++++.+|++..++.++|.++...|++++|+..|+++++.+|+++.... ...+....+++++|+..|.+++...  
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999999999999974211 1122334567777777776554332  


Q ss_pred             -----------------------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205          197 -----------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (301)
Q Consensus       197 -----------------------------------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (301)
                                                         |..+.+|+.+|.++...|+   +++|+.+|++++..+|..++...
T Consensus       198 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        198 EQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             cccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCchHHHHH
Confidence                                               2223456666777777777   77777777777777653234333


Q ss_pred             h
Q 022205          242 F  242 (301)
Q Consensus       242 ~  242 (301)
                      +
T Consensus       275 ~  275 (296)
T PRK11189        275 Y  275 (296)
T ss_pred             H
Confidence            3

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.85  E-value=4.2e-19  Score=174.06  Aligned_cols=207  Identities=14%  Similarity=0.043  Sum_probs=174.0

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh--------------H
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV--------------G  101 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~  101 (301)
                      .++.++++......+..       +|++..++..+|.+++..|++++|+.+|+++++.+|++...              .
T Consensus       282 ~g~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            34455555555555544       77788899999999999999999999999999998865431              2


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH------
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI------  175 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~------  175 (301)
                      ...|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.+      
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            34577888999999999999999999999999999999999999999999999999999999988776655544      


Q ss_pred             ------------------------------------HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          176 ------------------------------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       176 ------------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                                                          +...|++++|+.+|+++++++|+++.+++.+|.++...|+   +
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---~  511 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---R  511 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Confidence                                                4457899999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ++|+..|+++++.+|+ +..+++.+++.+...++
T Consensus       512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCC
Confidence            9999999999999996 88888888776665544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.8e-20  Score=153.39  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=179.2

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      ..++|.....|..++..+++..+..+....|.++.+++|.++.+++.+|.+++-.+++++|+..|+++++++|.+..++.
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            44466666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVL  210 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~  210 (301)
                      .++.+.+++++++++...|+.+++.+|++++++...|.++..+++|++|++.|.+++.+.|.      ++..+.+-|.+.
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~  512 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV  512 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence            99999999999999999999999999999999999999999999999999999999999998      655555555544


Q ss_pred             HH-cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          211 YT-LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       211 ~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      .+ .++   +..|+..+++|+++||. .-.++-+++....+.++..++.
T Consensus       513 ~qwk~d---~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi  557 (606)
T KOG0547|consen  513 LQWKED---INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI  557 (606)
T ss_pred             hchhhh---HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence            43 355   99999999999999996 8888999998888888765544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.1e-18  Score=152.82  Aligned_cols=172  Identities=13%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH  135 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  135 (301)
                      +|+++.++..+|..+...|++++|+.+++.++...+..    ..++..+|.++...|++++|+..|++++..+|.+..++
T Consensus        65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  144 (389)
T PRK11788         65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL  144 (389)
T ss_pred             CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence            34444444555555555555555555555444421111    12344445555555555555555555555444444455


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      ..++.++...|++++|+..+++++...|.+.     ..+..+|.++...|++++|+.+|++++..+|++..++..+|.++
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  224 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence            5555555555555555555555544444331     12334444445555555555555555555555444555555555


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccC
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ...|+   +++|+..|++++..+|
T Consensus       225 ~~~g~---~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        225 LAQGD---YAAAIEALERVEEQDP  245 (389)
T ss_pred             HHCCC---HHHHHHHHHHHHHHCh
Confidence            55555   5555555555554444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=1e-18  Score=167.87  Aligned_cols=204  Identities=21%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      ++.+.+.......+..       +|+....+..++..+...|++++|+.+++.+....|.++..+..+|.++...|++++
T Consensus       649 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  721 (899)
T TIGR02917       649 KNYAKAITSLKRALEL-------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA  721 (899)
T ss_pred             CCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence            4444555444444433       334444444444444555555555555555544444444444444555555555555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+..|++++...|++ ..+..++.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|+++++.+
T Consensus       722 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       722 AIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             HHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            555555554444444 3334444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |+++.++..+|.++...|+   . +|+.++++++.+.|+ +...+..++.++...++
T Consensus       801 p~~~~~~~~l~~~~~~~~~---~-~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~  852 (899)
T TIGR02917       801 PDNAVVLNNLAWLYLELKD---P-RALEYAEKALKLAPN-IPAILDTLGWLLVEKGE  852 (899)
T ss_pred             CCCHHHHHHHHHHHHhcCc---H-HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence            4444444444444444444   2 244444444444443 44444444444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.84  E-value=2.4e-18  Score=163.08  Aligned_cols=206  Identities=15%  Similarity=0.079  Sum_probs=179.4

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      ....+++......+..       .|+.+. ...++..+...|++++|+..++++....|. ...+..+|.++...|++++
T Consensus       490 ~~~~eAi~a~~~Al~~-------~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~e  560 (987)
T PRK09782        490 TLPGVALYAWLQAEQR-------QPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAA  560 (987)
T ss_pred             CCcHHHHHHHHHHHHh-------CCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHH
Confidence            3555555544444433       344443 555677778999999999999998776554 4557788999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+.+|++++..+|.+...+..++......|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+.+|++++.++
T Consensus       561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~  639 (987)
T PRK09782        561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE  639 (987)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999888887777778889999999999999999996 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      |+++.++.++|.++...|+   +++|+..|+++++++|+ +..+++.++.++..+++...
T Consensus       640 Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        640 PNNSNYQAALGYALWDSGD---IAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999   99999999999999996 99999999999999888554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=2e-18  Score=169.33  Aligned_cols=191  Identities=16%  Similarity=0.099  Sum_probs=142.4

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH---------------------------------
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI---------------------------------  106 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~---------------------------------  106 (301)
                      +|....++..+|.++...|++++|+..|+++++.+|++..++..++.                                 
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~  460 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ  460 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            67777788889999999999999999999999999987766554443                                 


Q ss_pred             ---------HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH------
Q 022205          107 ---------LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------  171 (301)
Q Consensus       107 ---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------  171 (301)
                               ++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++..++.      
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~  540 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS  540 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                     34567899999999999999999999999999999999999999999999998888877655443      


Q ss_pred             --------------------------------------------------------------------HHHHHHHcccHH
Q 022205          172 --------------------------------------------------------------------LAEIYVSLQMYK  183 (301)
Q Consensus       172 --------------------------------------------------------------------lg~~~~~~~~~~  183 (301)
                                                                                          +|.++...|+++
T Consensus       541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~  620 (1157)
T PRK11447        541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA  620 (1157)
T ss_pred             hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence                                                                                455555556666


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      +|+.+|++++..+|+++.++..+|.++...|+   +++|+..|++++...|+ +..++..++.++..+++.
T Consensus       621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~  687 (1157)
T PRK11447        621 AARAAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALAWAALGDT  687 (1157)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCH
Confidence            66666666666666666666666666666666   66666666666666664 555555555555554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.84  E-value=9.1e-19  Score=168.23  Aligned_cols=191  Identities=16%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|..+..+..+|.++...|++++|+.++++++...|++..++..+|.++...|++++|+..|++++..+|.+..++..++
T Consensus       461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  540 (899)
T TIGR02917       461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA  540 (899)
T ss_pred             CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            34445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|+   +
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~  617 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD---L  617 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---H
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666666   6


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      ++|+..|+++++.+|. +..+++.++.++...++.
T Consensus       618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  651 (899)
T TIGR02917       618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNY  651 (899)
T ss_pred             HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence            6666666666666553 555555555555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=5.6e-18  Score=137.05  Aligned_cols=190  Identities=19%  Similarity=0.185  Sum_probs=171.5

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (301)
                      ..++.+.+.......+..       +|.....+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus        43 ~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEH-------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence            355667777776666654       5677788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          115 AEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       115 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|+++.++..+|.++...|++++|+.+++++
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999853  5567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      +...|.++..+..++.++...|+   .++|..+.+.+....|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       196 QQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhCc
Confidence            99999999999999999999999   9999998887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=9.4e-18  Score=146.95  Aligned_cols=190  Identities=13%  Similarity=0.028  Sum_probs=168.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKR  137 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~  137 (301)
                      ....+..+|..+...|+++.|+.++.++++..|.+..++..++.++...|++++|+..+++++..+|.+..     .+..
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            34678899999999999999999999999988988999999999999999999999999999998876532     5667


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCC
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGV  216 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~  216 (301)
                      +|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+ ..++..++.++...|+ 
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-  264 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-  264 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-
Confidence            89999999999999999999999999999999999999999999999999999999998876 4567889999999999 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~  257 (301)
                        +++|...++++++..|+ . .....++..+...++...+
T Consensus       265 --~~~A~~~l~~~~~~~p~-~-~~~~~la~~~~~~g~~~~A  301 (389)
T PRK11788        265 --EAEGLEFLRRALEEYPG-A-DLLLALAQLLEEQEGPEAA  301 (389)
T ss_pred             --HHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHhCCHHHH
Confidence              99999999999999995 4 3346677777776664443

>PLN02789 farnesyltranstransferase

Probab=99.82  E-value=1.1e-17  Score=140.50  Aligned_cols=216  Identities=13%  Similarity=0.090  Sum_probs=181.5

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (301)
                      .++.+++.+..... .++.++.....++..       +|.+.++|...+.++...| ++++++..+++++..+|++..+|
T Consensus        38 ~a~~~~ra~l~~~e-~serAL~lt~~aI~l-------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW  109 (320)
T PLN02789         38 EAMDYFRAVYASDE-RSPRALDLTADVIRL-------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW  109 (320)
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence            57778887765554 566777777777765       8888999998888888888 67999999999999999999999


Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          102 RLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       102 ~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      ..++.++...|+.  ++++.++.++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|+..|.+....
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999998888874  67899999999999999999999999999999999999999999999999999999999888765


Q ss_pred             ---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205          180 ---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  248 (301)
Q Consensus       180 ---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~  248 (301)
                         |.+    +.++.+..+++..+|++..+|..++.++..    +++   ..+|...+.+++..+|. ...++--|+.++
T Consensus       190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~---~~~~~~~~~~~~~~~~~-s~~al~~l~d~~  265 (320)
T PLN02789        190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS---DPEVSSVCLEVLSKDSN-HVFALSDLLDLL  265 (320)
T ss_pred             cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc---chhHHHHHHHhhcccCC-cHHHHHHHHHHH
Confidence               323    578888889999999999999999998887    344   67799999998888885 777777777777


Q ss_pred             HH
Q 022205          249 SA  250 (301)
Q Consensus       249 ~~  250 (301)
                      ..
T Consensus       266 ~~  267 (320)
T PLN02789        266 CE  267 (320)
T ss_pred             Hh
Confidence            65

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.2e-18  Score=149.04  Aligned_cols=196  Identities=13%  Similarity=0.008  Sum_probs=147.2

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|..+-.|+.+|..|+..|++.+|..+|.++...+|....+|...|..+...|..++|+..|..|-+.-|........+|
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            67777788888888888899999999999999999998889998888888888888888888888877777777777777


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----P---TVPLYHLAYADVLYT  212 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p---~~~~~~~~la~~~~~  212 (301)
                      .-|...++++-|.++|.+++.+.|++|-....+|.+.+..+.|.+|..+|+.++..-    +   .-...+.++|.++.+
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777666221    1   123346667777777


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCC
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN  259 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~  259 (301)
                      ++.   +++|+.+|++++.+.|. +...+-.+|.++..+|++.++..
T Consensus       468 l~~---~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  468 LNK---YEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             Hhh---HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH
Confidence            777   77777777777777774 67777777777777666555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.81  E-value=1e-17  Score=136.55  Aligned_cols=174  Identities=17%  Similarity=0.053  Sum_probs=155.1

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-  133 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-  133 (301)
                      +..+.....++.+|..++..|+++.|+..+++++..+|+++   .+++.+|.++...|++++|+..|+++++.+|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            34566888999999999999999999999999999999776   57899999999999999999999999999998876 


Q ss_pred             --HHHHHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccHHHHH
Q 022205          134 --LHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA  186 (301)
Q Consensus       134 --~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~  186 (301)
                        +++.+|.++...        |++++|+..|++++..+|++..++                 ..+|.+++..|++.+|+
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~  186 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI  186 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence              688999999876        889999999999999999986543                 36788899999999999


Q ss_pred             HHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          187 FCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       187 ~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ..|++++...|+.   +.+++.+|.++..+|+   +++|..+++......|
T Consensus       187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       187 NRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence            9999999997764   5799999999999999   9999998887766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=146.79  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=172.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP----------  129 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------  129 (301)
                      +|++..+|..||.+...+++-..|+..+.++++++|++..++..+|..|...|.-.+|+.++.+-+...|          
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            8999999999999999999999999999999999999999999999999999999999999888875332          


Q ss_pred             ---------------------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205          130 ---------------------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus       130 ---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                                                       .++++...||.+|...|+|++|+.+|+.++...|++...|..||-.+
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                             35778999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC----Cc-----hhHhhhHHHH
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG----KN-----TKALFGICLC  247 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~-----~~~~~~l~~~  247 (301)
                      ....+..+|+..|++|+++.|....+++++|.++..+|.   |++|+++|-.||.+.+.    ..     -.+|-.|-++
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a  551 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA  551 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999   99999999999998764    11     1345555555


Q ss_pred             HHHHHh
Q 022205          248 SSAIAQ  253 (301)
Q Consensus       248 ~~~l~~  253 (301)
                      .+.+++
T Consensus       552 ls~~~~  557 (579)
T KOG1125|consen  552 LSAMNR  557 (579)
T ss_pred             HHHcCC
Confidence            555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=9.4e-18  Score=143.58  Aligned_cols=185  Identities=18%  Similarity=0.171  Sum_probs=168.4

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      ..++|.....|...|..+.-.|..++|+.++..+.+..|++......+|.-|.+++++..|..+|..++.+.|.++.++.
T Consensus       339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~  418 (611)
T KOG1173|consen  339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH  418 (611)
T ss_pred             hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence            44577788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETF----M---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~----p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      .+|.+.+..+.|.+|..+|+.++..-    +   .-.+.+.+||.++.+.+.+++|+.+|+++|.+.|.++.++..+|.+
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i  498 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI  498 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            99999999999999999999998432    2   2245689999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205          210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  245 (301)
Q Consensus       210 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~  245 (301)
                      |..+|+   ++.|+++|.+++-++|+ +.-+---|.
T Consensus       499 y~llgn---ld~Aid~fhKaL~l~p~-n~~~~~lL~  530 (611)
T KOG1173|consen  499 YHLLGN---LDKAIDHFHKALALKPD-NIFISELLK  530 (611)
T ss_pred             HHHhcC---hHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence            999999   99999999999999997 543333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7.6e-18  Score=141.86  Aligned_cols=210  Identities=17%  Similarity=0.065  Sum_probs=188.3

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCC---------CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ   93 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   93 (301)
                      ++..-++.....+++.....+..+........         .+..++|+++.+|+..|+..+-.+++++|+.-|++++.+
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            66677777778888888877777766554321         346779999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHH
Q 022205           94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHD  167 (301)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~  167 (301)
                      +|++..++..++....+++++++++..|+.+....|+.++++...|.++..+++|++|++.|..++++.|.      ++.
T Consensus       424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~  503 (606)
T KOG0547|consen  424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA  503 (606)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998      666


Q ss_pred             HHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          168 AWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       168 ~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .+...|.+..+ .+++..|+..++++++++|....++..+|.+...+|+   .++|+++|++++.+...
T Consensus       504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLART  569 (606)
T ss_pred             hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence            66666665544 5899999999999999999999999999999999999   99999999999988653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=7.1e-18  Score=126.08  Aligned_cols=120  Identities=14%  Similarity=0.038  Sum_probs=57.0

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (301)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (301)
                      +++++..+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++
T Consensus        16 ~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         16 LKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44444444432   223444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      .+++++|.++...|++++|+..|++++.+.|+++..+..+|.+
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            4444444444444444444444444444444444444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=8.9e-18  Score=125.54  Aligned_cols=128  Identities=15%  Similarity=0.092  Sum_probs=119.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      ...|+++++.+|++   +..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999985   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      +++.+++++|.++..+|+   +++|+..|++++.++|+ +...+...+.+...+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHH
Confidence            999999999999999999   99999999999999996 8888877777666554

>PLN02789 farnesyltranstransferase

Probab=99.79  E-value=6.7e-17  Score=135.70  Aligned_cols=223  Identities=14%  Similarity=-0.001  Sum_probs=180.2

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .|+...++..+-.++...+..++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|.+..+|...
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            34445555555555677889999999999999999999999999999999998 68999999999999999999999999


Q ss_pred             HHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 022205          139 VAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG--  214 (301)
Q Consensus       139 ~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--  214 (301)
                      +.+....|+.  ++++.++.++++.+|++..+|...|.++...|++++|+.++.++++.+|.+..+|...+.+....|  
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence            9999999874  788999999999999999999999999999999999999999999999999999999999988763  


Q ss_pred             -CC-CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH----hhhccCCccc--ccchHHHHHHHHHHHHHHHhh
Q 022205          215 -GV-DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA----QLTKGRNKED--KESPELQSLAAAALEKDYKQR  283 (301)
Q Consensus       215 -~~-~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~----~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  283 (301)
                       .. ...++++.+..+++.++|+ +..+|..++-++...+    ....+...-.  -.....+..+...|.++|...
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence             31 1135788999999999996 8889987777766521    1110000000  012233445666788888753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=2e-18  Score=144.34  Aligned_cols=193  Identities=19%  Similarity=0.086  Sum_probs=120.7

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKR  137 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~  137 (301)
                      ++.....+..++.. ...+++++|+.++..+.+.++ ++..+.....++...++++++...++++....  +.++.+|..
T Consensus        74 ~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (280)
T PF13429_consen   74 DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLA  151 (280)
T ss_dssp             ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence            44555566666666 688999999999988887654 46666677778889999999999999977644  678889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  217 (301)
                      +|.++...|++++|+..++++++.+|+++.++..++.++...|+++++...+.......|+++..+..+|.++..+|+  
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--  229 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--  229 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--
Confidence            999999999999999999999999999999999999999999999999888888888888888899999999999999  


Q ss_pred             cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                       +++|+.+|+++++.+|+ +...+..++.++...|+...+.
T Consensus       230 -~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  230 -YEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             -HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------
T ss_pred             -ccccccccccccccccc-cccccccccccccccccccccc
Confidence             99999999999999996 9999999999999988855443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.78  E-value=3.4e-18  Score=142.96  Aligned_cols=166  Identities=25%  Similarity=0.264  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      ...+...+..+...++++++...++.+....  |.++.++..+|.++...|++++|+..|++++..+|+++.+...++.+
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3445556677889999999999999987654  57889999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                      +...|+.+++...+.......|.++..|..+|.++...|++++|+.+|++++..+|+++..+..+|.++...|+   .++
T Consensus       190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~  266 (280)
T PF13429_consen  190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDE  266 (280)
T ss_dssp             HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---ccc
Confidence            99999999999999999999899999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHhcc
Q 022205          222 AKKYYASTIDL  232 (301)
Q Consensus       222 A~~~~~~al~~  232 (301)
                      |...++++++.
T Consensus       267 A~~~~~~~~~~  277 (280)
T PF13429_consen  267 ALRLRRQALRL  277 (280)
T ss_dssp             -----------
T ss_pred             ccccccccccc
Confidence            99999998764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.78  E-value=3.2e-16  Score=131.57  Aligned_cols=154  Identities=17%  Similarity=0.059  Sum_probs=134.9

Q ss_pred             CCChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (301)
                      .+..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566788889999996444    346789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ..|+++++++|++..+|.++|.++...|++++|+..|++++..+|+++.... ...+....++   +++|+..|.+++..
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~---~~~A~~~l~~~~~~  194 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLD---PKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCC---HHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999984222 2233445677   99999999887755


Q ss_pred             cC
Q 022205          233 TG  234 (301)
Q Consensus       233 ~p  234 (301)
                      .+
T Consensus       195 ~~  196 (296)
T PRK11189        195 LD  196 (296)
T ss_pred             CC
Confidence            33

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.75  E-value=2.6e-16  Score=123.86  Aligned_cols=151  Identities=9%  Similarity=0.019  Sum_probs=130.7

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      +..|+..|+++..........  .|..+         +...++.++++..+++++..+|++...|..+|.++...|++++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~~---------~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~   91 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLHQ---------FASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN   91 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Ccccc---------ccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence            446778899887654432221  12111         1125778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH-HHccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                      |+..|+++++++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.++..+|.+++..|+   +++|+.+|+
T Consensus        92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~  168 (198)
T PRK10370         92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence            99999999999999999999999975 67787  5999999999999999999999999999999999   999999999


Q ss_pred             HHhcccCC
Q 022205          228 STIDLTGG  235 (301)
Q Consensus       228 ~al~~~p~  235 (301)
                      +++++.|.
T Consensus       169 ~aL~l~~~  176 (198)
T PRK10370        169 KVLDLNSP  176 (198)
T ss_pred             HHHhhCCC
Confidence            99999986

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=4.7e-17  Score=130.97  Aligned_cols=188  Identities=12%  Similarity=0.040  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      .++.+..++.+|.+..+...|+..+...++.+|.+.......++++..++++++|.++|+.+++.+|.+.++...+|.-|
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence            46677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      +.-++++-|+.+|++.+...-.+|+.+.++|.|++..++++-++.+|++++....   .-.++|+++|.+..-.|+   +
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~  411 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---F  411 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---h
Confidence            9999999999999999999999999999999999999999999999999997653   236799999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      .-|..+|+-++.-+|+ +..++.+|++...+-|+.
T Consensus       412 nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  412 NLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCch
Confidence            9999999999999996 999999999887776653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=4.5e-17  Score=131.08  Aligned_cols=183  Identities=14%  Similarity=0.033  Sum_probs=169.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|.+.+.....|.++-..++.++|.++++.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+...-.+++.+.++|
T Consensus       286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig  365 (478)
T KOG1129|consen  286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG  365 (478)
T ss_pred             CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence            67788888888989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                      .|.+..++++-++..|++++..-.+.   .++|+++|.+....|++.-|..+|+-++..+|++..++.++|.+..+.|+ 
T Consensus       366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-  444 (478)
T KOG1129|consen  366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-  444 (478)
T ss_pred             HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-
Confidence            99999999999999999999875432   68999999999999999999999999999999999999999999999999 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                        .++|..++..+-.+.|+ -....++++.
T Consensus       445 --i~~Arsll~~A~s~~P~-m~E~~~Nl~~  471 (478)
T KOG1129|consen  445 --ILGARSLLNAAKSVMPD-MAEVTTNLQF  471 (478)
T ss_pred             --hHHHHHHHHHhhhhCcc-ccccccceeE
Confidence              99999999999999996 6666666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.72  E-value=1.2e-15  Score=138.02  Aligned_cols=189  Identities=17%  Similarity=0.142  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHc------------CCHHHHHHHHHHHHhcC
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAK------------GLWAEAEKAYSSLLEDN  128 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~  128 (301)
                      ++.++..+|..++....+.-|..-|+.+++.-.  .++.+...+|+++++.            +.+++|+..|.+++..+
T Consensus       563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            334444445555555555555554444444322  2334445555555433            46789999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 022205          129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAY  206 (301)
Q Consensus       129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l  206 (301)
                      |.|..+-..+|.++...|++.+|+.+|.++.+.-.+++++|.++|+||+.+|+|..|+..|+.+++..  .+++.++..|
T Consensus       643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L  722 (1018)
T KOG2002|consen  643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL  722 (1018)
T ss_pred             cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            99999999999999999999999999999999887789999999999999999999999999999654  3568899999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      |.+++..|.   +.+|...+.+|+.+.|. +.-..++++++..++....
T Consensus       723 ara~y~~~~---~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  723 ARAWYEAGK---LQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHhhh---HHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHH
Confidence            999999999   99999999999999996 8889999999999888644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.72  E-value=9.3e-16  Score=124.94  Aligned_cols=158  Identities=15%  Similarity=0.111  Sum_probs=141.7

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---H
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---A  168 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~  168 (301)
                      +..+..++.+|..+...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45677899999999999999999999999999999876   57899999999999999999999999999998876   7


Q ss_pred             HHHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHHHHH
Q 022205          169 WRELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       169 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~~~~A~  223 (301)
                      ++.+|.++...        |++++|+..|++++..+|++..++                 ..+|.+++..|+   +.+|+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~  186 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAI  186 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHH
Confidence            89999999886        899999999999999999986542                 357888999999   99999


Q ss_pred             HHHHHHhcccCC--CchhHhhhHHHHHHHHHhhh
Q 022205          224 KYYASTIDLTGG--KNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       224 ~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~~~  255 (301)
                      ..|+++++..|+  ....+++.++.++..+++..
T Consensus       187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence            999999999875  35689999999999998744

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.72  E-value=3.1e-15  Score=137.22  Aligned_cols=159  Identities=16%  Similarity=0.129  Sum_probs=146.9

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (301)
                      ..+++.-+......+|.++.+++++|.+..+.|.+++|...++.+++..|++..++..++.++.+.+++++|...+++++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            34455555556667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205          160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  239 (301)
                      ..+|+++.+.+.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+   .++|...|+++++...+ -.+
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~~  223 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GAR  223 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-chH
Confidence            99999999999999999999999999999999999999999999999999999999   99999999999998775 445


Q ss_pred             Hhh
Q 022205          240 ALF  242 (301)
Q Consensus       240 ~~~  242 (301)
                      .+.
T Consensus       224 ~~~  226 (694)
T PRK15179        224 KLT  226 (694)
T ss_pred             HHH
Confidence            543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.71  E-value=1e-15  Score=120.51  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hhHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE  153 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~  153 (301)
                      .++.++++..+++++..+|++...|..+|.++...|++++|+..|++++..+|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      .++++++.+|+++.+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999887654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=6.6e-15  Score=113.39  Aligned_cols=173  Identities=20%  Similarity=0.070  Sum_probs=161.3

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLDPVLHKR  137 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~  137 (301)
                      +|....+|.-+|..|...|+.+.|.+.|++++...|++..++.+.|..+..+|++++|...|++++.  ..|..+.++.+
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN  144 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN  144 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence            8889999999999999999999999999999999999999999999999999999999999999998  33556779999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  217 (301)
                      +|.|..+.|+++.|..+|+++++.+|+.+.+...++..++..|++-.|..++++.....+-....+.....+....|+  
T Consensus       145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd--  222 (250)
T COG3063         145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD--  222 (250)
T ss_pred             hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc--
Confidence            999999999999999999999999999999999999999999999999999999998888788887777888999999  


Q ss_pred             cHHHHHHHHHHHhcccCC
Q 022205          218 NILLAKKYYASTIDLTGG  235 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p~  235 (301)
                       -+.|-++=.+..+..|.
T Consensus       223 -~~~a~~Y~~qL~r~fP~  239 (250)
T COG3063         223 -RAAAQRYQAQLQRLFPY  239 (250)
T ss_pred             -HHHHHHHHHHHHHhCCC
Confidence             88888888787888885

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.71  E-value=5.5e-15  Score=139.43  Aligned_cols=165  Identities=10%  Similarity=-0.062  Sum_probs=142.0

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---------------  130 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------  130 (301)
                      ++..++..|++++|+.+|++++...|.+    ......++.++...|++++|+..++++...+|.               
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            5778889999999999999988877755    234556677788889999999999998887762               


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      ...++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            23467788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGGKNT  238 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (301)
                      ...|+   +++|...++++++..|+ +.
T Consensus       438 l~~~~---~~~A~~~~~~ll~~~Pd-~~  461 (765)
T PRK10049        438 LDLQE---WRQMDVLTDDVVAREPQ-DP  461 (765)
T ss_pred             HHhCC---HHHHHHHHHHHHHhCCC-CH
Confidence            99999   99999999999999996 44

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.70  E-value=7e-15  Score=138.70  Aligned_cols=179  Identities=13%  Similarity=-0.015  Sum_probs=156.7

Q ss_pred             HHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Q 022205           73 AAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGN  147 (301)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~  147 (301)
                      .++..|++++|+..|+++++..|..| .+...+|.++...|++++|+..|++++..+|.+    ......++.++...|+
T Consensus       246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~  325 (765)
T PRK10049        246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN  325 (765)
T ss_pred             HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence            44677999999999999998864332 234446999999999999999999999988876    3567778888999999


Q ss_pred             hhHHHHHHHHHHHhcCC-------------C--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          148 FPTAIEWLNKYLETFMA-------------D--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~-------------~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      +++|+..++++...+|.             +  ..++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus       326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999998773             2  35678899999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      .|+   +++|+..+++++.++|+ +...++..+.+...+++..
T Consensus       406 ~g~---~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        406 RGW---PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             cCC---HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHH
Confidence            999   99999999999999996 9999999999888877633

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=4.6e-15  Score=138.43  Aligned_cols=191  Identities=10%  Similarity=-0.060  Sum_probs=163.4

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      .+.|..+...+..+...++.|+++.|+..|.++++.+|.++....-+..++...|+.++|+.++++++...|........
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            44667777888889999999999999999999999999986444477888888999999999999999444555555555


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  217 (301)
                      +|.++...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++  
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~--  184 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR--  184 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--
Confidence            68899999999999999999999999999999999999999999999999999999999986665 555666655666  


Q ss_pred             cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                       ..+|+..|+++++.+|+ +...++.+..+...++-
T Consensus       185 -~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        185 -NYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRI  218 (822)
T ss_pred             -HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence             77799999999999996 88888887777666554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=7e-15  Score=123.44  Aligned_cols=195  Identities=16%  Similarity=-0.007  Sum_probs=157.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +..++.+..+.|...+.+|+++.|...++.++..+..+..+++.+|..+..+|+.++|+.+|-+.-..--++..++..++
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qia  565 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA  565 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33456666677777788888888888888888888888888888888888888888888888888777777888888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .+|..+.+..+|++++-++..+-|++|..+..||.+|-+.|+-.+|..|+-......|.+.+..-.+|..|....-   +
T Consensus       566 niye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~  642 (840)
T KOG2003|consen  566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---S  642 (840)
T ss_pred             HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---H
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888887777   8


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      ++|+.+|+++--+.|+ ...-...++.|..+.|+..++.
T Consensus       643 ekai~y~ekaaliqp~-~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  643 EKAINYFEKAALIQPN-QSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             HHHHHHHHHHHhcCcc-HHHHHHHHHHHHHhcccHHHHH
Confidence            8888888888888884 5544566777777777755543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.69  E-value=8.7e-15  Score=132.58  Aligned_cols=192  Identities=15%  Similarity=0.061  Sum_probs=136.5

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .|++.-.+.-.|...+..|+|-.|+.+|..++...|. -+.....+|.|+..+|+.+.|+..|.++++.+|++..++..|
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL  239 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence            5666666666677777788888888888888888874 345667778888888888888888888888888888877777


Q ss_pred             HHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q 022205          139 VAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYT  212 (301)
Q Consensus       139 ~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~  212 (301)
                      |.+-....+   +..+...+.++...+|.+|.+...|+..++..|+|+.+......++......   ...++.+|.+|..
T Consensus       240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha  319 (1018)
T KOG2002|consen  240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA  319 (1018)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            776665543   5567777777777777777777777777777777776666666666554322   2346666777777


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      +|+   +++|..+|.+++..+|++.+-.++|++..+...+++
T Consensus       320 ~Gd---~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl  358 (1018)
T KOG2002|consen  320 QGD---FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL  358 (1018)
T ss_pred             hcc---HHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence            777   777777777777666653366666666666665553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.4e-14  Score=115.35  Aligned_cols=209  Identities=14%  Similarity=0.121  Sum_probs=131.9

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEA  110 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~  110 (301)
                      ...++.+++....++..       +|+...+...+|..+-+.|..+.|+.+-..++. .|+.     ..+...+|.-|+.
T Consensus        48 s~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~  119 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA  119 (389)
T ss_pred             hcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH
Confidence            44555566666665554       566666666667777777777777766655554 2422     2345566666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcccHHHH
Q 022205          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~lg~~~~~~~~~~~A  185 (301)
                      .|-++.|...|.........-..+...+..+|....+|++|+..-++...+.|..     +..+..|+..+....+++.|
T Consensus       120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            6777777777766655444444566666677777777777777777666666544     34556666666666667777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      +..+.++++.+|++..+-..+|.++...|+   ++.|++.++.+++.||+.-....-.|..||..+|+..
T Consensus       200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         200 RELLKKALQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHHHHHHHhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            777777777777776666677777777777   7777777777777766522334445666666666533

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.68  E-value=4.6e-15  Score=110.11  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=96.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      ..+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++..++.+|.++...|+   +++|+..|+++++++|+
T Consensus        84 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGE---PESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            88888888888888888   88888888888888885

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.67  E-value=1.7e-14  Score=126.59  Aligned_cols=194  Identities=16%  Similarity=0.163  Sum_probs=158.8

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--  126 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--  126 (301)
                      ....|..+.+...++..|...|+++.|+..++.+++.        .|.-......+|.+|..++++.+|+..|++++.  
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3447788888889999999999999999999999997        444444555689999999999999999999997  


Q ss_pred             ------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          127 ------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       127 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                            .+|.-..++.+|+.+|...|++++|..++++++++..        .-+..+.+++.++...+++++|+.+++++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence                  3455566899999999999999999999999998742        22456788999999999999999999999


Q ss_pred             HhhC-----CCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-------CchhHhhhHHHHHHHHHh
Q 022205          193 ILSQ-----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-------KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       193 l~~~-----p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~l~~~~~~l~~  253 (301)
                      +++-     +++   +..+.++|.+|+.+|+   +++|.+.|++|+.+...       .....++.++..+.++..
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk---~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGK---YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            9653     333   5688999999999999   99999999999988532       123344556665555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=3.7e-14  Score=127.68  Aligned_cols=208  Identities=16%  Similarity=0.150  Sum_probs=143.7

Q ss_pred             ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (301)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (301)
                      +-+++.++...++..       +|.++.+|..+|.++-+.|+.+++...+-.+-..+|.+...|..++.....+|++.+|
T Consensus       154 ~~eeA~~i~~EvIkq-------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQ-------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             CHHHHHHHHHHHHHh-------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence            344455555555544       5555666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------------
Q 022205          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------------  164 (301)
Q Consensus       118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------------  164 (301)
                      .-+|.++++.+|.+.......+.+|.+.|+...|...|.+++..+|.                                 
T Consensus       227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666666666666666666666666666655555555554443331                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 022205          165 --------------------------------------------------------------------------------  164 (301)
Q Consensus       165 --------------------------------------------------------------------------------  164 (301)
                                                                                                      
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence                                                                                            


Q ss_pred             --------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCCC
Q 022205          165 --------------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAYADVLYTLGGVD  217 (301)
Q Consensus       165 --------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~  217 (301)
                                                +++.+..++.++...|++..|+.+|..+....+ .+..+|+.+|.||..+|.  
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e--  464 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE--  464 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh--
Confidence                                      123344678888888999999999988887655 335689999999999999  


Q ss_pred             cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                       ++.|+.+|.+++.+.|+ +..+...|+..+..+|+.++
T Consensus       465 -~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~Ek  501 (895)
T KOG2076|consen  465 -YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEK  501 (895)
T ss_pred             -HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHH
Confidence             99999999999999996 89999999999998888654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.67  E-value=1.2e-14  Score=114.22  Aligned_cols=180  Identities=16%  Similarity=0.122  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (301)
                      ...+...+-......|++..+ ..++..+...|+-+.+..+..++...+|.+..+...+|...+..|++..|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            344666666777788999888 8888899999999999999999888899999988889999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205          160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  239 (301)
                      ...|+++.+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..++..|+   ++.|..++..+...-+. +.+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d~~  203 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-DSR  203 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-chH
Confidence            99999999999999999999999999999999999999999999999999999999   99999999999887664 888


Q ss_pred             HhhhHHHHHHHHHhhhccCCccccc
Q 022205          240 ALFGICLCSSAIAQLTKGRNKEDKE  264 (301)
Q Consensus       240 ~~~~l~~~~~~l~~~~~~~~~~~~~  264 (301)
                      +--+++++....+++..+.+...++
T Consensus       204 v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         204 VRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHHHHhhcCChHHHHhhcccc
Confidence            9999999999988877655544333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.67  E-value=1.3e-14  Score=117.85  Aligned_cols=196  Identities=17%  Similarity=0.172  Sum_probs=170.3

Q ss_pred             CChHHHHHHHHHHhcCCCCc---------CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKR---------SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGIL  107 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~  107 (301)
                      .+.+.-++++..++...+..         ...+|++..+++..|.+|+..|+-..|+.-+.+++..-|+...+....|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            33445556677666544332         345888999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHH---HHH------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPV---LHK------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~---~~~------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (301)
                      ++.+|.+++|...|..++..+|++..   +..            .....++..|+..-++......++..|-++..+...
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R  195 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR  195 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence            99999999999999999999996532   222            223344567899999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +.||...|+...||..++.+-++..++...++.++.+++..|+   .+.++...+.+++++|+
T Consensus       196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLKLDPD  255 (504)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHccCcc
Confidence            9999999999999999999999999999999999999999999   99999999999999997

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=2.1e-13  Score=119.37  Aligned_cols=177  Identities=12%  Similarity=0.054  Sum_probs=141.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----------------------  126 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------------  126 (301)
                      ..+..+...|+++.|+..++++.+..|+++.++..++.++...|++++|+..+....+                      
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            4477788888888888888888888888888888888888888888888855554442                      


Q ss_pred             --------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHH
Q 022205          127 --------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  186 (301)
Q Consensus       127 --------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~  186 (301)
                                          ..|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.++++
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al  314 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLE  314 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHH
Confidence                                22345666777788888888889999998888884 4456544444444  348889999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ...++.++..|+++..+..+|.++...++   +++|.++|+++++..|+  ...+..++.++...|+
T Consensus       315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~  376 (398)
T PRK10747        315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPD--AYDYAWLADALDRLHK  376 (398)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999   99999999999999984  4455678888888776

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.66  E-value=5.7e-15  Score=109.61  Aligned_cols=119  Identities=18%  Similarity=0.054  Sum_probs=111.8

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (301)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (301)
                      ..+++++...|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            999999999999999999999999999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.66  E-value=2.1e-14  Score=112.86  Aligned_cols=167  Identities=14%  Similarity=0.042  Sum_probs=156.8

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +|+...+ ..++..+...|+-+.+..+..++...+|.+..+....|...++.|+|.+|+..++++....|+++.+|..+|
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            6777777 888899999999999999999999889999888888999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.-..|+   +
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~---~  218 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD---F  218 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---h
Confidence            9999999999999999999999999999999999999999999999999999999888899999999999999999   9


Q ss_pred             HHHHHHHHHHh
Q 022205          220 LLAKKYYASTI  230 (301)
Q Consensus       220 ~~A~~~~~~al  230 (301)
                      ++|...-.+-+
T Consensus       219 ~~A~~i~~~e~  229 (257)
T COG5010         219 REAEDIAVQEL  229 (257)
T ss_pred             HHHHhhccccc
Confidence            99987765433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.66  E-value=2.2e-14  Score=124.08  Aligned_cols=168  Identities=15%  Similarity=0.017  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW----AEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      ........+..+...|++++|...+++++..+|++..++.. +..+...|++    ..+...+......+|....+...+
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            34455556777888888888888888888888888766654 4444444443    444444443335667777777788


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcC
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLG  214 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~  214 (301)
                      |.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|.++    ..+..+|.++...|
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            88888899999999999999999998888888899999999999999999999888876443    24567888888999


Q ss_pred             CCCcHHHHHHHHHHHhcccC
Q 022205          215 GVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p  234 (301)
                      +   +++|+..|++++...|
T Consensus       201 ~---~~~A~~~~~~~~~~~~  217 (355)
T cd05804         201 D---YEAALAIYDTHIAPSA  217 (355)
T ss_pred             C---HHHHHHHHHHHhcccc
Confidence            9   9999999988877666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=4.4e-14  Score=118.71  Aligned_cols=189  Identities=17%  Similarity=0.123  Sum_probs=176.7

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      .....+++++|..+-..|+.++|+.+|-++....-++..+++.++.+|..+.+..+|++++.++...-|+++.++..+|.
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d  600 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD  600 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence            34567888889999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      +|-+.|+-.+|.+++-...+.+|.+.++.--||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+   |+
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yq  677 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQ  677 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HH
Confidence            999999999999999999999999999999999999999999999999999999999999989999999999999   99


Q ss_pred             HHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          221 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .|...|+..-+..|. +...+--|......+|-
T Consensus       678 ka~d~yk~~hrkfpe-dldclkflvri~~dlgl  709 (840)
T KOG2003|consen  678 KAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence            999999999999996 88888777777777764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2e-13  Score=110.04  Aligned_cols=212  Identities=15%  Similarity=0.070  Sum_probs=175.1

Q ss_pred             hcCCccHHHHHHHHHHhccCCh----------------HHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChH
Q 022205           18 DNGGGGAWEYLCLVKKLKVRRP----------------DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLD   81 (301)
Q Consensus        18 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   81 (301)
                      .++++-|.+.+-.+-..++...                +.++.+...++..   ++-...+..-+..++|.-|+..|-+|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            3455556666555554444333                3444444444433   12223356778889999999999999


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChhHHHHHHH
Q 022205           82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      .|..+|..+.+...--..+...+..+|....+|++|++..++..+..+..     +..+..++..+....+.+.|...+.
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999998655567788899999999999999999999999988765     3467888888899999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +.+.-.+..||..+|+   .++...++.++.+..++
T Consensus       205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~---~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK---PAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999999987 5688889999999999   99999999999998875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.64  E-value=4.9e-14  Score=129.36  Aligned_cols=143  Identities=8%  Similarity=-0.084  Sum_probs=136.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|....++..+|......|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            999999999999999999999999999999999999999999999999999999887655544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.63  E-value=1e-13  Score=112.68  Aligned_cols=192  Identities=15%  Similarity=0.018  Sum_probs=173.5

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +|....-...+|..++-.|++..|+..|..++..+|++-.+++..|.+|..+|+..-|+..+.++++..|+...+....|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            56677778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADH---DAWR------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      .++.++|.+++|+..|+.++..+|++.   ++..            .....++..|++..|+.+..+.+++.|=+...+.
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence            999999999999999999999999652   2222            2333445668999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      ..+.||...|+   ...|+..++.+-++..+ +...+|-+...+..+++..
T Consensus       194 ~Rakc~i~~~e---~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~  240 (504)
T KOG0624|consen  194 ARAKCYIAEGE---PKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAE  240 (504)
T ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHH
Confidence            99999999999   99999999999999986 8899998888888887744

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1e-13  Score=115.17  Aligned_cols=181  Identities=17%  Similarity=0.090  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  145 (301)
                      -|+--+...+..+++..|+.+-++.++.+|.+..++.+.|.++...|+.++|+-.|+.+....|.....|..+..+|...
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence            34444666788889999999999999999999999999999999999999999999999999999988888888888887


Q ss_pred             CChhHH------------------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205          146 GNFPTA------------------------------------IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       146 g~~~~A------------------------------------~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  189 (301)
                      |++.+|                                    .++++++++++|....+...++.++...|.+.+++..+
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            775554                                    45555566667777777778888899999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ++.+...|+ ...+..+|.++...+.   +++|+.+|..|++++|. +.++.-|+-..--..
T Consensus       462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  462 EKHLIIFPD-VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHhhccc-cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhcc
Confidence            999988775 4568899999999999   99999999999999996 888888887544443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=1.6e-14  Score=119.82  Aligned_cols=172  Identities=16%  Similarity=0.059  Sum_probs=156.3

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-------  133 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------  133 (301)
                      |.....-...+.++...|++++|....-.++++++.+..++++.|.++...++.+.|+..|++++..+|+...       
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~  245 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM  245 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence            3344444455788888999999999999999999999999999999999999999999999999999998643       


Q ss_pred             -----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          134 -----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       134 -----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                           .+..-|.-.++.|++..|.+.|..+|.++|++    ...|.+.|.+....|+..+|+..+..++.++|....++.
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence                 66777888899999999999999999999987    446788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ..|.|+..+++   |++|++.|+++++...+
T Consensus       326 ~ra~c~l~le~---~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  326 RRANCHLALEK---WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence            99999999999   99999999999998764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.62  E-value=1.6e-14  Score=106.36  Aligned_cols=105  Identities=14%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             hcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          126 EDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       126 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      ... ++..+..+.+|..+...|++++|+..|+-+...+|.++..|++||.++...|+|++|+.+|.+++.++|++|.++.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            455 6677788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +.|.|++..|+   .+.|++.|+.++...
T Consensus       108 ~ag~c~L~lG~---~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLACDN---VCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence            88888888888   888888888888876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=1.1e-13  Score=118.37  Aligned_cols=170  Identities=18%  Similarity=0.115  Sum_probs=141.6

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  149 (301)
                      +|..+...++++.|+.++.+++..+-.        ..+.......++++.......-.+|.-..-...-|..++..|+|.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence            344555556677777777776654322        344445555666666666666677777777777899999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      .|+..|.+++..+|+++..|.+.|.||...|.+..|++..+.+++++|+....|.+-|.++..+.+   |+.|.+.|+++
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~ea  452 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             hcccCCCchhHhhhHHHHHHHH
Q 022205          230 IDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       230 l~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ++++|. +..+.-++..|...+
T Consensus       453 le~dp~-~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  453 LELDPS-NAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HhcCch-hHHHHHHHHHHHHHh
Confidence            999996 888888888888765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=1.6e-14  Score=115.60  Aligned_cols=115  Identities=21%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +..-|.-+...++|.+|+..|.++|..+|.++..|.+.+.+|.++|.++.|++.++.++.++|+...+|..||.+|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44567778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ++++|+..|+++|.++|++..++.+|..+-..++.
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998888888877777

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-13  Score=122.28  Aligned_cols=196  Identities=15%  Similarity=0.056  Sum_probs=171.9

Q ss_pred             CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 022205           55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--  131 (301)
Q Consensus        55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--  131 (301)
                      .....+|.++.+.+.++..+...++.+.|....+.+++.++ +++.+|.+++.++..++++.+|+.....++...|+|  
T Consensus       469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~  548 (799)
T KOG4162|consen  469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV  548 (799)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence            34455777888899999999999999999999999999954 788999999999999999999998887776544431  


Q ss_pred             --------------------------------------------------------------------------------
Q 022205          132 --------------------------------------------------------------------------------  131 (301)
Q Consensus       132 --------------------------------------------------------------------------------  131 (301)
                                                                                                      
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence                                                                                            


Q ss_pred             ---------------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205          132 ---------------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  190 (301)
Q Consensus       132 ---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  190 (301)
                                           ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|...|.
T Consensus       629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~  708 (799)
T KOG4162|consen  629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL  708 (799)
T ss_pred             cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence                                 12455677777888889999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH--HHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK--YYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       191 ~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      .++.++|+++.....+|.++...|+   ..-|.+  .+..+++++|. +..+||++|-+....|+.
T Consensus       709 ~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  709 VALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence            9999999999999999999999998   666666  99999999996 999999999999998873

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.61  E-value=4.1e-13  Score=116.23  Aligned_cols=195  Identities=14%  Similarity=-0.005  Sum_probs=154.3

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      +|+.+..+..+|..+...|+.+.+...+.++....|.+   .......+.++...|++++|...+++++..+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            68888889999988888899999888888888877743   445677888889999999999999999999999887766


Q ss_pred             HHHHHHHHcCC----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          137 RRVAIAKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       137 ~l~~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      . +..+...|+    ...+...+......+|..+..+..+|.++...|++++|+..+++++.++|+++.++..+|.+++.
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4 555554444    44444444443355667777778888999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHHHHHhhhccC
Q 022205          213 LGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      .|+   +++|+.++++++...|.   .....++.++.++...|+...+.
T Consensus       161 ~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         161 QGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             cCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            999   99999999999988763   22345678888888877766543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=1.1e-12  Score=114.98  Aligned_cols=167  Identities=13%  Similarity=0.040  Sum_probs=139.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH------------------------------------------hCCCc
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK------------------------------------------QFPES   97 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------------------------------~~p~~   97 (301)
                      +|+++.++..++..+...|++++|+.++..+.+                                          ..|++
T Consensus       183 ~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~  262 (398)
T PRK10747        183 APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ  262 (398)
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence            677777788888888888888888755554442                                          22456


Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      +.+...++..+...|+.++|...++++++..| ++......+.+  ..++.++++..+++.++.+|+++..+..+|.++.
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~  339 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM  339 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            66777889999999999999999999999544 55544444443  4599999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      ..++|++|..+|+++++..|++.. +..++.++...|+   .++|..+|++++.+.
T Consensus       340 ~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~---~~~A~~~~~~~l~~~  391 (398)
T PRK10747        340 KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK---PEEAAAMRRDGLMLT  391 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence            999999999999999999998655 5689999999999   999999999998875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.60  E-value=1.7e-13  Score=126.99  Aligned_cols=186  Identities=11%  Similarity=-0.009  Sum_probs=159.7

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----  132 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----  132 (301)
                      ..+|.+..++..++..+...+++++|+.+++.+++.+|+...+++..|.++.+.+++.++...  .++...+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            447889999999999999999999999999999999999999999999999999887777665  5555544444     


Q ss_pred             --------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---
Q 022205          133 --------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---  195 (301)
Q Consensus       133 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---  195 (301)
                                    .+++.+|.||..+|+.++|...++++++.+|+++.+..++|..|... +.++|+.++.+|+..   
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence                          89999999999999999999999999999999999999999999999 999999999988754   


Q ss_pred             -----------------CCCCHHH--------HHHHH------------HHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205          196 -----------------QPTVPLY--------HLAYA------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (301)
Q Consensus       196 -----------------~p~~~~~--------~~~la------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (301)
                                       +|++...        ...++            ..|...++   |++++..+..+++.+|. |.
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n~  257 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-NN  257 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-ch
Confidence                             3444322        12223            55666667   99999999999999996 99


Q ss_pred             hHhhhHHHHHHH
Q 022205          239 KALFGICLCSSA  250 (301)
Q Consensus       239 ~~~~~l~~~~~~  250 (301)
                      .+.++++.|+..
T Consensus       258 ~a~~~l~~~y~~  269 (906)
T PRK14720        258 KAREELIRFYKE  269 (906)
T ss_pred             hhHHHHHHHHHH
Confidence            999999999984

>TIGR00540 hemY_coli hemY protein

Probab=99.59  E-value=1.3e-12  Score=114.86  Aligned_cols=180  Identities=13%  Similarity=0.066  Sum_probs=134.9

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL-----------------------  125 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-----------------------  125 (301)
                      ..+..++..|+++.|...++.+.+..|+++.++..++.++...|++++|...+.+..                       
T Consensus       158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            346666666777777777777666667666666666666666666666665554444                       


Q ss_pred             ---------------hcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHcccHHH
Q 022205          126 ---------------EDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMYKQ  184 (301)
Q Consensus       126 ---------------~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~lg~~~~~~~~~~~  184 (301)
                                     ...|    +++.++..++..+...|++++|...++++++..|++....  ..........++.+.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence                           3344    4677788888888999999999999999999999887532  223333444678889


Q ss_pred             HHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          185 AAFCYEELILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       185 A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ++..++++++..|+++  .....+|.+++..|+   +++|.++|+  .+++..|+ .. .+..++.++..+|+
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~-~~-~~~~La~ll~~~g~  385 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD-AN-DLAMAADAFDQAGD  385 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC-HH-HHHHHHHHHHHcCC
Confidence            9999999999999999  888899999999999   999999999  57778885 43 35588888888776

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.59  E-value=7.7e-13  Score=115.68  Aligned_cols=206  Identities=12%  Similarity=0.026  Sum_probs=172.7

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      .+.-++...+....+..       .|.....|...+......|+...|..++..+++..|++..+|+..-.+.+....++
T Consensus       563 hgt~Esl~Allqkav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e  635 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE  635 (913)
T ss_pred             cCcHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence            33444555555555544       56666677777888888899999999999999999999999998888899999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .|..+|.++-...|+ ..+|+..+.+...+++.++|+.+++++++.+|+.+..|..+|.++.+.++.+.|...|...++.
T Consensus       636 raR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  636 RARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence            999999998886665 5678888888888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .|..+..|..++.+-...|.   .-.|...+.++.-.+|. +...|......-.+.|+
T Consensus       715 cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  715 CPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK-NALLWLESIRMELRAGN  768 (913)
T ss_pred             CCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCC
Confidence            99999999999999999998   99999999999999996 77777766655555554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.59  E-value=6.1e-13  Score=116.29  Aligned_cols=185  Identities=15%  Similarity=0.098  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ..+|+.-+......++.++|+.+++.+++.+|+.+..|.++|.++.++++.+.|...|...++..|..+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            34566666667778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH----------------------
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----------------------  201 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------------  201 (301)
                      ..|..-.|...+.++.-.||.++..|...-.+-.+.|+.+.|.....+||+..|.+..                      
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL  810 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL  810 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988776543                      


Q ss_pred             --------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          202 --------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       202 --------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                              ++...|..++....   ++.|.+.|.++++.+|+ +..+|..+..-+...|
T Consensus       811 kkce~dphVllaia~lfw~e~k---~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  811 KKCEHDPHVLLAIAKLFWSEKK---IEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG  865 (913)
T ss_pred             HhccCCchhHHHHHHHHHHHHH---HHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence                    55567778888888   99999999999999997 5555544444444444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.59  E-value=8.5e-14  Score=102.50  Aligned_cols=109  Identities=14%  Similarity=-0.015  Sum_probs=92.1

Q ss_pred             HHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH
Q 022205           89 VLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD  167 (301)
Q Consensus        89 ~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  167 (301)
                      .+.... ++.....+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++.+|+..|.+++.++|++|.
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            344455 6677777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      .++++|.|++..|+.+.|.++|+.++....
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            888888888888888888888888887763

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=3.5e-14  Score=113.70  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      -+..-|.-+...++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|.++|.+|+.+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            45667888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          214 GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      |+   +++|+..|+++++++|+ +...+-+|..+...+++..
T Consensus       163 gk---~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GK---YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             Cc---HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence            99   99999999999999996 8877888888888887744

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=2e-12  Score=109.96  Aligned_cols=154  Identities=21%  Similarity=0.156  Sum_probs=133.3

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      |.....++-.|...+..|+++.|+..+..+++..|+++..+...+.+++..++..+|.+.+++++..+|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34566777778888899999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      ++...|++.+|+..++..+..+|+++..|..||..|..+|+..+|.                 ...++.++..|+   ++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~---~~  442 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGR---LE  442 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCC---HH
Confidence            9999999999999999999999999999999999998888877664                 456778888888   99


Q ss_pred             HHHHHHHHHhcccC
Q 022205          221 LAKKYYASTIDLTG  234 (301)
Q Consensus       221 ~A~~~~~~al~~~p  234 (301)
                      +|+..+.++-+...
T Consensus       443 ~A~~~l~~A~~~~~  456 (484)
T COG4783         443 QAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999988887753

>TIGR00540 hemY_coli hemY protein

Probab=99.58  E-value=3.2e-12  Score=112.45  Aligned_cols=239  Identities=9%  Similarity=-0.084  Sum_probs=175.8

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCC
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGL  113 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~  113 (301)
                      ..++++.+..........       .|.....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus        96 ~~g~~~~A~~~l~~~~~~-------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH-------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            455555555555443332       444444555668889999999999999999999999875 566667999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------------------------------
Q 022205          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------------------------------  161 (301)
Q Consensus       114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------------------------------  161 (301)
                      ++.|...++...+..|+++.++..++.++...|++++|...+.+..+.                                
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999999999999887777665432                                


Q ss_pred             ------cC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          162 ------FM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH--LAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       162 ------~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                            .|    +++..+..+|..+...|++++|...++++++..|++....  ..........++   ...+.+.++++
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~  325 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQ  325 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHH
Confidence                  23    3667777888888999999999999999999999887532  222222333456   88899999999


Q ss_pred             hcccCCCch--hHhhhHHHHHHHHHhhhccCCcccc--cc--hHHHHHHHHHHHHHHHhhCC
Q 022205          230 IDLTGGKNT--KALFGICLCSSAIAQLTKGRNKEDK--ES--PELQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       230 l~~~p~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~  285 (301)
                      ++..|+ +.  .....+|.++.+.++..++.....+  ..  ...... ...+.+.+.+.+.
T Consensus       326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~  385 (409)
T TIGR00540       326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD  385 (409)
T ss_pred             HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC
Confidence            999996 77  6777888888887776655543331  10  111112 2356666666555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.57  E-value=1.6e-12  Score=117.43  Aligned_cols=164  Identities=18%  Similarity=0.094  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  145 (301)
                      .+...|...+-.|++++|..++..+++.+|.++.+|..+|.+|...|+.++|...+-.|-..+|.+...|..++.....+
T Consensus       141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            33444777777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHH
Q 022205          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~~~  220 (301)
                      |++++|+-+|.+++..+|.+....+..+.+|.+.|+...|...|.+++...|...     ..-...+..+...++   -+
T Consensus       221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e  297 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RE  297 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HH
Confidence            9999999999999999999999999999999999999999999999999998321     233445777888888   89


Q ss_pred             HHHHHHHHHhcc
Q 022205          221 LAKKYYASTIDL  232 (301)
Q Consensus       221 ~A~~~~~~al~~  232 (301)
                      .|.+.+..++..
T Consensus       298 ~a~~~le~~~s~  309 (895)
T KOG2076|consen  298 RAAKALEGALSK  309 (895)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999884

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=4e-12  Score=99.41  Aligned_cols=153  Identities=17%  Similarity=0.086  Sum_probs=136.3

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      |....+....|..+-..|++++|+++++..+..+|.+..++-..-.+...+|+.-+|++.+...++..+.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            55555555567777778999999999999999999998888887788888999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +|...|+|.+|.-++++.+-.+|.++..+..+|.+++-+|   ++.-|.++|.++++++|.+..+++.+..+....
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876   577899999999999998888887775554433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7e-13  Score=113.58  Aligned_cols=191  Identities=16%  Similarity=0.056  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHH
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-------LHKR  137 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~  137 (301)
                      .....+|...+...++..|+..+..++..+ .+...+...+.+++..|.+.+++..+.++++.......       +...
T Consensus       225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  225 HKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            345577899999999999999999999999 88888889999999999999999999998886654322       4445


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMA--------------------------DHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      +|..+...++++.++.+|.+++.....                          -...-..-|..++..|+|..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            677888889999999999998875432                          122333569999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCc
Q 022205          192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK  260 (301)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~  260 (301)
                      ++..+|+++..+.+.|-||.++|.   +..|+.....+++++|+ +.++|..-+.|+..+.+..++...
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGE---YPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999   99999999999999995 999999999999999987765433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.54  E-value=1.7e-12  Score=114.23  Aligned_cols=194  Identities=18%  Similarity=0.141  Sum_probs=158.7

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----  127 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  127 (301)
                      .|........+|..+...+++++|+.+|++++...        |....++..+|..|...|++++|..++++++++    
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            45555566678999999999999999999999853        334557888999999999999999999999873    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                          .|.-...+..++.++..++++++|+.++++++++.        |.-+..+.+||.+|+.+|++++|..+|++++.+
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                23334578889999999999999999999998763        233567899999999999999999999999976


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc----CC--CchhHhhhHHHHHHHHHhhhc
Q 022205          196 Q--------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT----GG--KNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       196 ~--------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~----p~--~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      .        +........+|..+...++   +.+|...|.+++.+.    |+  +-...+.+|+-+|..+|+.++
T Consensus       397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~---~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~  468 (508)
T KOG1840|consen  397 LRELLGKKDYGVGKPLNQLAEAYEELKK---YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA  468 (508)
T ss_pred             HHhcccCcChhhhHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence            4        3335678899999999999   999999998887662    22  245667799999999998443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.54  E-value=6.2e-12  Score=106.96  Aligned_cols=180  Identities=18%  Similarity=0.062  Sum_probs=150.2

Q ss_pred             cCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022205           51 NDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL  130 (301)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  130 (301)
                      .........++.............+....-..+-..+-+..+  |....+++..+..+...|.+++|+..++..+...|+
T Consensus       261 ~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~  338 (484)
T COG4783         261 EQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD  338 (484)
T ss_pred             HhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC
Confidence            333344444444444444444433333333333333333333  778889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      |+..+...+.++...|+.++|.+.+++++..+|+.+..+.++|.++++.|++.+|+..+...+..+|+++..|..+|..|
T Consensus       339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay  418 (484)
T COG4783         339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY  418 (484)
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ..+|+   ..+|...+-+...+..+
T Consensus       419 ~~~g~---~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         419 AELGN---RAEALLARAEGYALAGR  440 (484)
T ss_pred             HHhCc---hHHHHHHHHHHHHhCCC
Confidence            99999   99999999999888763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=5.2e-13  Score=114.72  Aligned_cols=105  Identities=15%  Similarity=-0.006  Sum_probs=47.2

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      |..++..|+++.|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEI  175 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~  175 (301)
                      |+..|+++++++|+++.+...++.+
T Consensus        89 A~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4444444444444444444333333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.52  E-value=4.6e-12  Score=110.72  Aligned_cols=198  Identities=19%  Similarity=0.138  Sum_probs=167.9

Q ss_pred             HHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 022205           41 KVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA  120 (301)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~  120 (301)
                      .-+.....++..       .|+....+...|..+...|+-++|..+...++..++.+...|..+|.++....+|++|+++
T Consensus        25 kgLK~~~~iL~k-------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc   97 (700)
T KOG1156|consen   25 KGLKLIKQILKK-------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC   97 (700)
T ss_pred             hHHHHHHHHHHh-------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence            345555666665       6777778888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---C
Q 022205          121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---P  197 (301)
Q Consensus       121 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p  197 (301)
                      |+.|+..+|+|..++..++.+..++|+++-....-.+.++..|..-..|..++..+.-.|++..|....+...+..   |
T Consensus        98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~  177 (700)
T KOG1156|consen   98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP  177 (700)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988877666443   2


Q ss_pred             CCHH---------------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205          198 TVPL---------------------------------------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (301)
Q Consensus       198 ~~~~---------------------------------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (301)
                      +...                                       .....|.++..+++   +++|...|...+..+|+ +.
T Consensus       178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPd-n~  253 (700)
T KOG1156|consen  178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERNPD-NL  253 (700)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCch-hH
Confidence            2111                                       22234667777778   99999999999999996 88


Q ss_pred             hHhhhHHHHHH
Q 022205          239 KALFGICLCSS  249 (301)
Q Consensus       239 ~~~~~l~~~~~  249 (301)
                      ..+.++-.|+.
T Consensus       254 ~Yy~~l~~~lg  264 (700)
T KOG1156|consen  254 DYYEGLEKALG  264 (700)
T ss_pred             HHHHHHHHHHH
Confidence            88888777775

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=5.7e-13  Score=114.52  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                      ..|...+..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.+++.+|+ 
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-   85 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-   85 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-
Confidence            3455555556666666666666666666666666666666666666666666666666666666666666666666666 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                        +++|+.+|+++++++|+ +..+...+..|...+.
T Consensus        86 --~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         86 --YQTAKAALEKGASLAPG-DSRFTKLIKECDEKIA  118 (356)
T ss_pred             --HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence              66666666666666664 5555555555555553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.52  E-value=2.8e-11  Score=113.42  Aligned_cols=192  Identities=14%  Similarity=0.020  Sum_probs=156.8

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHH
Q 022205           26 EYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG  105 (301)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a  105 (301)
                      .+...+.....++...++.....++..       +|........++..+...|+.++|+.++++++...|........+|
T Consensus        37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~-------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         37 QYDSLIIRARAGDTAPVLDYLQEESKA-------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhh-------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            344555555666677777777777766       6655322226777778889999999999999943344444455558


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A  185 (301)
                      .++..+|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~A  188 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHH
Confidence            899999999999999999999999999999999999999999999999999999999985554 5566666667777779


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      +..+++++..+|++..++..+..++...|-   ...|.+...+
T Consensus       189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~  228 (822)
T PRK14574        189 LQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKE  228 (822)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHh
Confidence            999999999999999999999999999999   8888876665

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.52  E-value=1.2e-12  Score=119.06  Aligned_cols=192  Identities=15%  Similarity=0.063  Sum_probs=172.3

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHH
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLH  135 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~  135 (301)
                      .+++....+|..+|..|....+...|.++|.++...+|.+..+.-..+..|....+++.|....-.+-+..|-..  ..|
T Consensus       486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW  565 (1238)
T KOG1127|consen  486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW  565 (1238)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence            447778888889999998888889999999999999999999999999999999999999998777766666543  356


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.
T Consensus       566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127|consen  566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK  645 (1238)
T ss_pred             hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                         +.+|+..+...+..... ...+.-|++.|+.++..
T Consensus       646 ---Ykeald~l~~ii~~~s~-e~~~q~gLaE~~ir~ak  679 (1238)
T KOG1127|consen  646 ---YKEALDALGLIIYAFSL-ERTGQNGLAESVIRDAK  679 (1238)
T ss_pred             ---HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence               99999999999988875 88888999999888765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.50  E-value=9.7e-13  Score=116.95  Aligned_cols=132  Identities=27%  Similarity=0.276  Sum_probs=74.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  148 (301)
                      ..+..+...++.++|..++.++-..+|..+.++++.|.++...|.+.+|.+.|..++..+|+++.....+|.++...|+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~  734 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP  734 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          149 PTAIE--WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       149 ~~A~~--~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      .-|..  .+..+++.+|.++.+|+.+|.++...|+.++|..||+.++++.+.+|
T Consensus       735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            44444  55555555555555555555555555555555555555555555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=4.6e-12  Score=105.47  Aligned_cols=181  Identities=13%  Similarity=0.031  Sum_probs=151.2

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      |+++.-...+..+..++-......|++......+|.+++..|++++|+..|+++...+|.+.......|.++...|+++.
T Consensus       205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~  284 (564)
T KOG1174|consen  205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ  284 (564)
T ss_pred             HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence            44444334444555556666667789999999999999999999999999999999999999988888999999999988


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      -..+....+........-|+.-|...+..+++..|+.+-++++..+|.+..++...|.++..+|+   .++|+-+|+.|.
T Consensus       285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HTQAVIAFRTAQ  361 (564)
T ss_pred             HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hHHHHHHHHHHH
Confidence            88888888888777777888888888888999999999999999999998888889999999999   999999999999


Q ss_pred             cccCCCchhHhhhHHHHHHHHHhhh
Q 022205          231 DLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       231 ~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      .+.|- ..+.|-||.-||...+.+.
T Consensus       362 ~Lap~-rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  362 MLAPY-RLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hcchh-hHHHHHHHHHHHHhhchHH
Confidence            99884 8888888888887766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=8.3e-13  Score=109.76  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------------H
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------D  167 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~  167 (301)
                      +..+.+.|+...|++++|.+.--..++.++.+.++++-.|.++...++.+.|+..|++++.++|++.            .
T Consensus       171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le  250 (486)
T KOG0550|consen  171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE  250 (486)
T ss_pred             HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence            4445566777778888888888888888888888888889999999999999999999999988773            3


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  243 (301)
                      .|-.-|.-.++.|++..|.++|..+|.++|++.    ..|.+.|.+...+|+   ..+|+.....++.++|. ++.++..
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yikall~  326 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKALLR  326 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHHHHH
Confidence            566778888888999999999999999998763    467888888889999   99999999999999985 8999999


Q ss_pred             HHHHHHHHHhhhc
Q 022205          244 ICLCSSAIAQLTK  256 (301)
Q Consensus       244 l~~~~~~l~~~~~  256 (301)
                      -+.|+.-++++..
T Consensus       327 ra~c~l~le~~e~  339 (486)
T KOG0550|consen  327 RANCHLALEKWEE  339 (486)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888887543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.47  E-value=4.1e-11  Score=97.27  Aligned_cols=162  Identities=14%  Similarity=0.007  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK  136 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  136 (301)
                      .+..++..|...+..|++++|+..|+.++..+|..+.+.   +.+|.++...+++++|+..+++.++.+|+++.   +++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            455677789999999999999999999999999876554   88999999999999999999999999888754   788


Q ss_pred             HHHHHHHHcC---------------C---hhHHHHHHHHHHHhcCCCHH---H--------------HHHHHHHHHHccc
Q 022205          137 RRVAIAKAQG---------------N---FPTAIEWLNKYLETFMADHD---A--------------WRELAEIYVSLQM  181 (301)
Q Consensus       137 ~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~---~--------------~~~lg~~~~~~~~  181 (301)
                      .+|.++...+               +   ..+|+..|++.++..|++.-   +              -+..|..|.+.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            8888765443               1   24688999999999998832   1              1357888999999


Q ss_pred             HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          182 YKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       182 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                      |..|+.-++.++...|+.   +.++..++.+|..+|.   .++|.....
T Consensus       191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~  236 (243)
T PRK10866        191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVAK  236 (243)
T ss_pred             hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHH
Confidence            999999999999988866   4688889999999999   888877654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.46  E-value=2.3e-11  Score=106.49  Aligned_cols=167  Identities=15%  Similarity=0.143  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      -..++..+.-++..++|...++.++.+++.+|+++....+.|..+..+|+-++|....+.++..++.+...|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34566668888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      ...+|++|+++|+.|+...|+|...|..++.+..++++++.....-.+.++..|.....|..++..+...|+   +..|.
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~  163 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMAL  163 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHhccc
Q 022205          224 KYYASTIDLT  233 (301)
Q Consensus       224 ~~~~~al~~~  233 (301)
                      ...+...+..
T Consensus       164 ~il~ef~~t~  173 (700)
T KOG1156|consen  164 EILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHhh
Confidence            8887776654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.45  E-value=2.4e-11  Score=96.38  Aligned_cols=157  Identities=20%  Similarity=0.164  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK  136 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  136 (301)
                      ....++..|...+..|++.+|+..|+.+...+|.+   +.+.+.+|.++...|+++.|+..+++.+...|+++.   +++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            45567788999999999999999999999999854   567889999999999999999999999999988754   788


Q ss_pred             HHHHHHHHcC-----------ChhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHHcccHHHHHHH
Q 022205          137 RRVAIAKAQG-----------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAFC  188 (301)
Q Consensus       137 ~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~  188 (301)
                      .+|.++....           ...+|+..|+..+...|+++.+                 -+.+|..|++.|.|..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888876543           3458999999999999998322                 23568888888888888888


Q ss_pred             HHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHH
Q 022205          189 YEELILSQPTVP---LYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       189 ~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      ++.+++..|+.+   .++..++.++..+|.   .+.|
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~---~~~a  197 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGL---KQAA  197 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCC---hHHH
Confidence            888888888775   467888888888888   6643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.45  E-value=4.2e-12  Score=112.43  Aligned_cols=183  Identities=15%  Similarity=0.088  Sum_probs=141.8

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK---  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---  136 (301)
                      -|..|..-..++..++..|-..+|+.++++.-.        |.....||...|+..+|.....+-++. |.++..|.   
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--------w~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--------WDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--------HHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhh
Confidence            456677777777777777777777777766543        334455666666666666666666663 33333333   


Q ss_pred             -------------------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          137 -------------------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       137 -------------------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                                               .+|......++|.++...++..++++|-.+..|+.+|.+..+.++++.|..+|..
T Consensus       465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r  544 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR  544 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence                                     3333344468899999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      ++.++|++..+|.+++.+|...++   -.+|...+++|++-+-. +...|-+..++....+.++
T Consensus       545 cvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~e  604 (777)
T KOG1128|consen  545 CVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFE  604 (777)
T ss_pred             HhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHH
Confidence            999999999999999999999999   99999999999998864 8888877777777766544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.40  E-value=1.7e-11  Score=88.52  Aligned_cols=100  Identities=20%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE  174 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~  174 (301)
                      ++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|+.++..+|++   +.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3344444444444444444444444444333   2334444444444444444444444444444432   333444444


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      ++...|++++|+.++.+++...|+++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            44444444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.4e-11  Score=98.19  Aligned_cols=120  Identities=16%  Similarity=0.011  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Q 022205          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCY  189 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~  189 (301)
                      ..+.-+.-++..+..+|++..-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35566677788888999999999999999999999999999999999999999999999998877653   356888899


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++++..+|++..+.+.+|..++..|+   +.+|+..++..++..|.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999   99999999999998885

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.38  E-value=1.3e-11  Score=84.75  Aligned_cols=98  Identities=23%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+.+|++++...|.++.++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            34566666666677777777777777666666666667777777777777777777777776676666667777777777


Q ss_pred             CCCCcHHHHHHHHHHHhcccC
Q 022205          214 GGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al~~~p  234 (301)
                      |+   ++.|..++.++++.+|
T Consensus        82 ~~---~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GK---YEEALEAYEKALELDP   99 (100)
T ss_pred             Hh---HHHHHHHHHHHHccCC
Confidence            77   7777777777666655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=3e-12  Score=83.09  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcccC
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p  234 (301)
                      ++..|..+|.+++..|++++|+.+|+++++++|+++.+++++|.++..+| +   +++|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence            34555556666666666666666666666666666666666666666655 5   5666666666665555

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.38  E-value=6e-11  Score=88.95  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCh
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNF  148 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~  148 (301)
                      +..++...+...++.+...+|++   ..+.+.+|.++...|++++|...|+.++...|+.   ..+..+++.++...|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            34566666666666666666655   3344556666666666666666666666655443   22555566666666666


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ++|+..++. +...+..+.++..+|+++...|++++|+..|+++
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            666666644 2223333445555666666666666666666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.37  E-value=3.2e-11  Score=87.10  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA  205 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  205 (301)
                      +..++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+.+|+.++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999999877   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205          206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (301)
Q Consensus       206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (301)
                      +|.++...|+   +++|..+|.++++..|+ +.
T Consensus        82 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~  110 (119)
T TIGR02795        82 LGMSLQELGD---KEKAKATLQQVIKRYPG-SS  110 (119)
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHHCcC-Ch
Confidence            9999999999   99999999999999996 44

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=4.8e-11  Score=96.42  Aligned_cols=121  Identities=20%  Similarity=0.064  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN---FPTAIEWLN  156 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~  156 (301)
                      .+.-+.-++..+..+|++..-|.++|.+|+.+|+++.|...|.++++..|++++++..+|.++....+   ..++...|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45666778888889999999999999999999999999999999999999999999999998887643   568999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      +++..+|.++.+.+.||..++..|+|.+|+..++..+...|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999887654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=5e-12  Score=82.03  Aligned_cols=67  Identities=24%  Similarity=0.312  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCC
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP  197 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p  197 (301)
                      ++.+|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56778888888888888888888888888888888888888888888888 68888888888888877

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.36  E-value=2.3e-11  Score=110.98  Aligned_cols=173  Identities=11%  Similarity=0.056  Sum_probs=157.2

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK  157 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (301)
                      .+...|...|-++++.+|....++..+|.+|....+...|..+|+++.+.|+.+..++...+..|....+++.|....-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             HHHhcCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          158 YLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       158 ~l~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +-+..|..  ...|..+|..|...+++.+|+..|+.++..+|.+.+.|..+|.+|...|+   +..|++.|.++..++|.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence            66666643  45678899999999999999999999999999999999999999999999   99999999999999996


Q ss_pred             CchhHhhhHHHHHHHHHhh
Q 022205          236 KNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       236 ~~~~~~~~l~~~~~~l~~~  254 (301)
                       ..-+.|-.+.....+|+.
T Consensus       629 -s~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  629 -SKYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             -hHHHHHHHHHHHHHhhhH
Confidence             777777777777766663

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.36  E-value=1.9e-11  Score=83.87  Aligned_cols=99  Identities=25%  Similarity=0.214  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46678888888899999999999999888888888888999999999999999999999998888888889999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCC
Q 022205          180 QMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~  198 (301)
                      |+++.|..++.+++...|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999988887763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.36  E-value=5.5e-11  Score=98.91  Aligned_cols=165  Identities=15%  Similarity=0.040  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      +..+..-.|.+++..|++++|++++...     ++.....+...++..+++++.|.+.++.+-+.+.+...+...-+.+.
T Consensus       101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~  175 (290)
T PF04733_consen  101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3344445566777778888888877653     55667777778888888888888888888777766665555555555


Q ss_pred             HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH-
Q 022205          143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI-  219 (301)
Q Consensus       143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~-  219 (301)
                      ...|  .+.+|..+|++....+|.++..++.++.++..+|+|++|...+++++..+|.++.++.+++.+...+|+   . 
T Consensus       176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~  252 (290)
T PF04733_consen  176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PT  252 (290)
T ss_dssp             HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TC
T ss_pred             HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---Ch
Confidence            5555  578888888888877777888888888888888888888888888888888888888888888888888   6 


Q ss_pred             HHHHHHHHHHhcccCC
Q 022205          220 LLAKKYYASTIDLTGG  235 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~  235 (301)
                      +.+.+++.+.-..+|+
T Consensus       253 ~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  253 EAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HHHHHHHHHCHHHTTT
T ss_pred             hHHHHHHHHHHHhCCC
Confidence            4555666666666774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.35  E-value=9.8e-11  Score=92.84  Aligned_cols=155  Identities=18%  Similarity=0.172  Sum_probs=123.9

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW  169 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~  169 (301)
                      .++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.++...|++++|+..+++.++.+|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            356778899999999999999999999999988875   4589999999999999999999999999999988   4678


Q ss_pred             HHHHHHHHHcc-----------cHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCCCcHHH
Q 022205          170 RELAEIYVSLQ-----------MYKQAAFCYEELILSQPTVPLY-----------------HLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       170 ~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~~~~~~~~~  221 (301)
                      +.+|.+++...           ...+|+..|+..+...|+++.+                 -+.+|..|++.|.   +..
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~a  159 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKA  159 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHH
Confidence            88898876543           3569999999999999988531                 2346888999999   999


Q ss_pred             HHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205          222 AKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       222 A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~  253 (301)
                      |+..++.+++.-|+  ....+++.+..++..+|.
T Consensus       160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence            99999999999997  334677778888888876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.34  E-value=5.1e-11  Score=91.74  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      .++..+|.++...|++++|+..|++++...|++   +.++.++|.++...|++++|+.+|++++.++|.....+..+|.+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            345555666666666666666666665554442   23566666666666666666666666666666666656566655


Q ss_pred             HH-------HcCCC----CcHHHHHHHHHHHhcccCC
Q 022205          210 LY-------TLGGV----DNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       210 ~~-------~~~~~----~~~~~A~~~~~~al~~~p~  235 (301)
                      +.       ..|+.    ..+++|+.+|++++..+|+
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            55       44440    0133666666677777775

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=4.5e-11  Score=106.04  Aligned_cols=149  Identities=17%  Similarity=0.098  Sum_probs=125.9

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      |........++.++...|-...|+..|++.-        .|.....||...|+..+|..+..+-++ .|.++..|..+|+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            5556667889999999999999999999854        456677888888888888888888888 4445554444433


Q ss_pred             ----------------------------HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205          175 ----------------------------IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (301)
Q Consensus       175 ----------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~  226 (301)
                                                  .....++|.++.++++..++++|-....|+.+|.+..++++   ++.|..+|
T Consensus       466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek---~q~av~aF  542 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK---EQAAVKAF  542 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh---hHHHHHHH
Confidence                                        33455889999999999999999999999999999999999   99999999


Q ss_pred             HHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          227 ASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       227 ~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      .+++.++|+ +..+|.+++-++..+++..+
T Consensus       543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             HHHhhcCCC-chhhhhhhhHHHHHHhhhHH
Confidence            999999996 99999999999999987544

>PRK11906 transcriptional regulator; Provisional

Probab=99.33  E-value=1.2e-10  Score=99.71  Aligned_cols=162  Identities=10%  Similarity=-0.059  Sum_probs=135.6

Q ss_pred             HHHHHHHHhCC---ChHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 022205           68 EQVSIAAMDCQ---CLDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDP  132 (301)
Q Consensus        68 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~  132 (301)
                      +..|...+..+   ..+.|+.+|.+++   ..+|+...++..++.+++..         ....+|....+++++.+|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            33466655554   3567899999999   89999999999999998765         245678899999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV-LY  211 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~  211 (301)
                      .++..+|.+....|+++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..+++++.++|.-..+-...-.+ .+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999876543333333 44


Q ss_pred             HcCCCCcHHHHHHHHHHHhcc
Q 022205          212 TLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       212 ~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ....   .++|++.|-+--+.
T Consensus       419 ~~~~---~~~~~~~~~~~~~~  436 (458)
T PRK11906        419 VPNP---LKNNIKLYYKETES  436 (458)
T ss_pred             cCCc---hhhhHHHHhhcccc
Confidence            5556   88899988765443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.33  E-value=2e-10  Score=86.07  Aligned_cols=117  Identities=23%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~  183 (301)
                      ..++...+...++..+..+|+.   ..+.+.+|.++...|++++|+..|+.++...|+.   +.+.+.||.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            5789999999999999999998   4578889999999999999999999999988665   457889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      +|+..++. +.-.+..+.++..+|.++...|+   +++|+..|++++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence            99999966 33445567788999999999999   999999999885

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.33  E-value=1.2e-10  Score=90.10  Aligned_cols=90  Identities=22%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg  173 (301)
                      ...+++.+|.++...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++..+|+++..+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34445556666666666666666666666544432   345666666666666666666666666666666666666666


Q ss_pred             HHHHHcccHHHHH
Q 022205          174 EIYVSLQMYKQAA  186 (301)
Q Consensus       174 ~~~~~~~~~~~A~  186 (301)
                      .++...|+...+.
T Consensus       114 ~~~~~~g~~~~a~  126 (172)
T PRK02603        114 VIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHcCChHhHh
Confidence            6666665544433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.33  E-value=3.1e-09  Score=102.53  Aligned_cols=185  Identities=11%  Similarity=0.025  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR  138 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  138 (301)
                      ...|..+...+.+.|++++|..++..+...    .| +...+..+...|.+.|++++|...|+.+.+.+ +.+...|..+
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL  620 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA  620 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence            345555666666667777777766666542    23 23445555556666677777777777666654 3445566666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  215 (301)
                      ...|.+.|++++|+.+|.+..+.  .| +..+|..+...|...|++++|..++..+.+.. +.+...+..+...|.+.|+
T Consensus       621 I~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~  699 (1060)
T PLN03218        621 VNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN  699 (1060)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            66777777777777777666654  33 24566666666667777777777776666543 2345566666677777777


Q ss_pred             CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                         +++|...|++.......++...|..+...+.+.++
T Consensus       700 ---~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~  734 (1060)
T PLN03218        700 ---WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ  734 (1060)
T ss_pred             ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence               77777777766543221245555555555555444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.33  E-value=6e-10  Score=99.27  Aligned_cols=66  Identities=21%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .+++.++..|-..|++++|+.++.+++...|+.+..+...|.++-..|+   +.+|...+..|-.+|+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChh
Confidence            3557889999999999999999999999999999999999999999999   99999999999998874

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.32  E-value=3.3e-10  Score=101.50  Aligned_cols=140  Identities=13%  Similarity=0.053  Sum_probs=114.3

Q ss_pred             HhCCCchhh--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHH
Q 022205           92 KQFPESKRV--GRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN--------FPTAIEWLNKY  158 (301)
Q Consensus        92 ~~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~  158 (301)
                      ...|.++.+  +++.|.-+...++   +..|+.+|+++++.+|+++.++..++.++.....        ...+.....++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            344566555  4566776666544   7789999999999999999999888887765422        33455555665


Q ss_pred             HHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          159 LET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       159 l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +..  +|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|+   +++|...|++|+.++|.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence            553  777888999999999999999999999999999999 58899999999999999   99999999999999996

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.32  E-value=3.2e-09  Score=102.41  Aligned_cols=185  Identities=12%  Similarity=0.013  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAI  141 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  141 (301)
                      ...|..+...|.+.|++++|..+|+.+..... .+...|..+...|.+.|++++|+..|....... .-+...|..+...
T Consensus       472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a  551 (1060)
T PLN03218        472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34555566666677777777777777665442 245566666666777777777777776665432 1234566666666


Q ss_pred             HHHcCChhHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCC
Q 022205          142 AKAQGNFPTAIEWLNKYLET----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~  216 (301)
                      +.+.|++++|..+|.+....    .| +..+|..+..+|.+.|++++|...|+...+.+ +.++..|..+...|.+.|+ 
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-  629 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-  629 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Confidence            66677777777776666542    23 24556666666666666666666666666554 3345566666666666666 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                        +++|...|.+..+..-.++...+..+..++.+.+
T Consensus       630 --~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G  663 (1060)
T PLN03218        630 --WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG  663 (1060)
T ss_pred             --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence              6666666666655421123334444444444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.31  E-value=1.1e-10  Score=89.97  Aligned_cols=122  Identities=17%  Similarity=0.109  Sum_probs=92.3

Q ss_pred             ChHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 022205           79 CLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      ++..+...+...++..+.+  ...++.+|.++...|++++|+..|++++...|+.   +.++..+|.++...|++++|+.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            3455555555554444433  5567888888888899999999999998776653   4578889999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH-------HcccHH-------HHHHHHHHHHhhCCCCH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP  200 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~  200 (301)
                      .+++++..+|..+..+..+|.++.       ..|+++       +|+.+|++++..+|.+.
T Consensus        94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999988888888888888888       666665       66666667777787654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.31  E-value=5.6e-10  Score=90.71  Aligned_cols=155  Identities=12%  Similarity=0.080  Sum_probs=130.6

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW  169 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~  169 (301)
                      .++..++..|......|++++|+..|++++...|..+.+   .+.+|.++...+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            456678889999999999999999999999999998765   4899999999999999999999999999988   5678


Q ss_pred             HHHHHHHHHcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcC
Q 022205          170 RELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLG  214 (301)
Q Consensus       170 ~~lg~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~  214 (301)
                      +.+|.++...+                  ...+|+..|+..+...|+...                 --+..|..|++.|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88898764443                  135788999999999998753                 1234677899999


Q ss_pred             CCCcHHHHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205          215 GVDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~  253 (301)
                      .   +..|+.-++.+++.-|+  ....+++.+..++..+|.
T Consensus       190 ~---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        190 A---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             c---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence            9   99999999999999887  556777788888887775

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.30  E-value=2.4e-10  Score=102.38  Aligned_cols=139  Identities=16%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             chhHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--------CHHHHHHHHHHHHh--c
Q 022205           61 PDVWTLYEQVSIAAMDCQC---LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--------LWAEAEKAYSSLLE--D  127 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~--~  127 (301)
                      ++.+..|.. |..++..++   ...|+.+|+++++.+|+++.++..++.++....        +...+.....+++.  .
T Consensus       337 ~~Ay~~~lr-g~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        337 GAALTLFYQ-AHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             HHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            344444433 666665544   789999999999999999999998888776542        24456666666655  3


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            777888999999999999999999999999999999 5889999999999999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=99.28  E-value=9.1e-11  Score=86.94  Aligned_cols=103  Identities=9%  Similarity=-0.126  Sum_probs=86.0

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      ..++..+..+..|.-++..|++++|...|+-....+|.++..|..||.++...++|++|+..|..+..+++++|...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            44555667777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      |.|+..+|+   ...|+..|..++..
T Consensus       112 gqC~l~l~~---~~~A~~~f~~a~~~  134 (165)
T PRK15331        112 GQCQLLMRK---AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHhCC---HHHHHHHHHHHHhC
Confidence            888888888   88888888888873

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.28  E-value=2e-11  Score=82.44  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=49.8

Q ss_pred             cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205          145 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      .|+++.|+.+++++++..|.  +...++.+|.+++..|++++|+.++++ ...+|.++..++.+|.+++.+|+   +++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence            45666666666666666663  344555566666666666666666666 55566666666666666666666   6666


Q ss_pred             HHHHHHH
Q 022205          223 KKYYAST  229 (301)
Q Consensus       223 ~~~~~~a  229 (301)
                      +.+|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            6666553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.28  E-value=1.2e-10  Score=89.98  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=94.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      ++....+++.+|..+...|++++|+.+|++++...|+.   +.++..+|.++...|++++|+.++++++...|.++..+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            34566689999999999999999999999999987764   468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC----C-------cHHHHHHHHHHHhcccCC
Q 022205          205 AYADVLYTLGGV----D-------NILLAKKYYASTIDLTGG  235 (301)
Q Consensus       205 ~la~~~~~~~~~----~-------~~~~A~~~~~~al~~~p~  235 (301)
                      .+|.++...|+.    +       .+++|..++++++.++|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            999999988861    1       146788888888888886

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.28  E-value=1.1e-08  Score=91.41  Aligned_cols=117  Identities=16%  Similarity=0.023  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +++.+++.|...|++++|+.+.+++|+..|..++.+...|.++-..|++.+|..+++.+-.+++.|-.+-...+..+.+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            56788999999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             CCCCcHHHHHHHHHHHhccc--CCCch---h-Hhh--hHHHHHHHHHh
Q 022205          214 GGVDNILLAKKYYASTIDLT--GGKNT---K-ALF--GICLCSSAIAQ  253 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al~~~--p~~~~---~-~~~--~l~~~~~~l~~  253 (301)
                      |+   .++|...+....+-+  |..+.   . .||  ..|.++.+.|+
T Consensus       276 ~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  276 GR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99   999999988766554  22221   1 333  45566666665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.26  E-value=2.2e-11  Score=82.28  Aligned_cols=81  Identities=28%  Similarity=0.317  Sum_probs=63.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205          111 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  188 (301)
                      +|+++.|+..+++++..+|.  +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.+++.+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57888888888888888875  455677788888888888888888888 777777777777888888888888888888


Q ss_pred             HHHH
Q 022205          189 YEEL  192 (301)
Q Consensus       189 ~~~a  192 (301)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            8764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.26  E-value=1.5e-10  Score=107.85  Aligned_cols=134  Identities=15%  Similarity=0.025  Sum_probs=122.0

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------  166 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------  166 (301)
                      ..|.+..++..+...+...+++++|+..++.++..+|+...+++.+|.++...+++.++..+  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            34788999999999999999999999999999999999999999999999999888777665  5555555554      


Q ss_pred             -------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          167 -------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       167 -------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                                   .+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +   +++|+.++.+|+..
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHH
Confidence                         89999999999999999999999999999999999999999999999 8   99999999999876

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.26  E-value=3e-11  Score=77.32  Aligned_cols=60  Identities=23%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      |..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++..+|+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            333344444444444444444444444444444444444444444444444444444433

>PRK15331 chaperone protein SicA; Provisional

Probab=99.23  E-value=2.4e-10  Score=84.73  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=64.3

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  175 (301)
                      +.....+..|.-+...|++++|...|+-+...+|.++..|..||.++..++++++|+..|..+..+++++|...+..|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            34445555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcccHHHHHHHHHHHHh
Q 022205          176 YVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~  194 (301)
                      ++..|+.+.|..+|+.++.
T Consensus       115 ~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            6666666666666666665

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.23  E-value=7.6e-10  Score=90.58  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=63.5

Q ss_pred             hhHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHH
Q 022205           99 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE  171 (301)
Q Consensus        99 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~  171 (301)
                      ...+..|..+ ...|+|++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|++++..+|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444443 34566666666666666666665   3466666666666666666666666666666553   556666


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      +|.++...|++++|+.+|+++++..|+...
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            666666666666666666666666666543

>PRK11906 transcriptional regulator; Provisional

Probab=99.22  E-value=2e-09  Score=92.31  Aligned_cols=132  Identities=13%  Similarity=-0.035  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCC
Q 022205          101 GRLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus       101 ~~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~  165 (301)
                      .++.|.-....+   ....|+..|.+++   ..+|+...++..++.++...         ....+|....+++++++|.|
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            367777776655   3467999999999   89999999999999998764         23457889999999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+   .++|....+++++++|.
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence            99999999999999999999999999999999999999999999999999   99999999999999995

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.4e-10  Score=93.13  Aligned_cols=131  Identities=19%  Similarity=0.139  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (301)
                      ....|..+++.|+|..|...|++++..-.    .+           ..++.+++.++.++++|.+|+..++++|+.+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            34668888999999999999998877322    11           2277888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhcccC
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAKKYYASTIDLTG  234 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~-~A~~~~~~al~~~p  234 (301)
                      ..+++..|.++...|+|+.|+..|++++++.|.|-.+...+..+..+...   +. ...+.|.+.+...+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999998888888877776665   44 44778888777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.21  E-value=5.7e-09  Score=85.45  Aligned_cols=106  Identities=18%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHH
Q 022205           64 WTLYEQVSIAA-MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---DPVLHK  136 (301)
Q Consensus        64 ~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  136 (301)
                      ....+..|..+ +..|++++|+..|+..++.+|++   +.+++.+|.+++..|++++|+..|++++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35566667765 66799999999999999999987   579999999999999999999999999988777   467999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW  169 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  169 (301)
                      .+|.++...|++++|+..|+++++.+|++..+-
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999987543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.21  E-value=5.1e-08  Score=81.39  Aligned_cols=180  Identities=13%  Similarity=0.049  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----------------  128 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------  128 (301)
                      +....+...+..|+++.|..-+.++....|.++.+..+...+|...|++......+.+.-+..                 
T Consensus       155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g  234 (400)
T COG3071         155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG  234 (400)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            333444555555555555555555555555555555555555555555555555555443210                 


Q ss_pred             -------C------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          129 -------P------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       129 -------p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                             +                  .++.+...++.-+...|+.++|.+...++++..-+ +.....+  -...-++..
T Consensus       235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~--~~l~~~d~~  311 (400)
T COG3071         235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLI--PRLRPGDPE  311 (400)
T ss_pred             HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHH--hhcCCCCch
Confidence                   0                  11223333444444455555555555555544322 2211111  112334455


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .=++..++.++..|++|..+..+|..+++.+.   |.+|..+|+.+++..|  ....+..++.++..+|+
T Consensus       312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~--s~~~~~~la~~~~~~g~  376 (400)
T COG3071         312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRP--SASDYAELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHcCC
Confidence            55555556666678889999999999999999   9999999999999988  45566677777777776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.21  E-value=1e-10  Score=74.88  Aligned_cols=64  Identities=22%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (301)
                      .+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4567777777777777777777777777777777777777777777777777777777777664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.20  E-value=2.2e-09  Score=101.03  Aligned_cols=161  Identities=14%  Similarity=0.071  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVA  140 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  140 (301)
                      +...|..+...+...|++++|+.+|+.+.... ..+...+..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            34455566666666777777777776665532 1233345555555555666666666665555543 334445555556


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCCCc
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAYADVLYTLGGVDN  218 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~  218 (301)
                      .|.+.|++++|..+|++..+  | +..+|..+...|.+.|+.++|+..|++.....  |+ ...+..+..++...|.   
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~---  441 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGL---  441 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCc---
Confidence            66666666666666655432  2 34455566666666666666666666554422  22 2333344444444444   


Q ss_pred             HHHHHHHHHHHh
Q 022205          219 ILLAKKYYASTI  230 (301)
Q Consensus       219 ~~~A~~~~~~al  230 (301)
                      .++|..+|....
T Consensus       442 ~~~a~~~f~~m~  453 (697)
T PLN03081        442 SEQGWEIFQSMS  453 (697)
T ss_pred             HHHHHHHHHHHH
Confidence            455554444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.20  E-value=3.3e-09  Score=99.91  Aligned_cols=248  Identities=11%  Similarity=0.024  Sum_probs=171.6

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      ++.++++.+.......     .+.|+ ...|..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|+++
T Consensus       304 g~~~eA~~lf~~M~~~-----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~  377 (697)
T PLN03081        304 GYSEEALCLYYEMRDS-----GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME  377 (697)
T ss_pred             CCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence            4455555555554432     22333 3467778888999999999999999998876 567778888899999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +|...|++...  | +...|..+...|...|+.++|+.+|++..+.  .| +..++..+..++...|..++|..+|+...
T Consensus       378 ~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        378 DARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             HHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999998754  2 5668899999999999999999999998764  34 46678888888999999999999999887


Q ss_pred             hhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--chHHH
Q 022205          194 LSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQ  269 (301)
Q Consensus       194 ~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~  269 (301)
                      +..+-  +...|..+..++.+.|+   +++|.+.+++. ...|  +...|..+..++...++...+.....+-  .....
T Consensus       454 ~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~-~~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~  527 (697)
T PLN03081        454 ENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRA-PFKP--TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK  527 (697)
T ss_pred             HhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence            64322  33467778888999999   99999988764 2344  4556666666665555433221110000  00000


Q ss_pred             HHHHHHHHHHHHhhCC-hhhhHHHHHHhhccC
Q 022205          270 SLAAAALEKDYKQRAP-AKLLLLTSALKSLKT  300 (301)
Q Consensus       270 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  300 (301)
                      ...-..+..+|.+.+. +...++...|+.-++
T Consensus       528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            0122346667777766 556666666665543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.19  E-value=2.2e-10  Score=95.38  Aligned_cols=177  Identities=16%  Similarity=0.061  Sum_probs=136.6

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhC-C-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQF-P-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  145 (301)
                      ..++..+...++-+.++..++..+... + .++.+....|.++...|++++|+..+.+.     .+.+.......++..+
T Consensus        70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~  144 (290)
T PF04733_consen   70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKM  144 (290)
T ss_dssp             HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc
Confidence            344444433345556666555544332 2 34556677788888899999999887754     6778888889999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      ++++.|.+.++...+.+.++.-+....+.+.+..|  .+.+|..+|+......|.++..+..+|.++..+|+   +++|.
T Consensus       145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eAe  221 (290)
T PF04733_consen  145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEAE  221 (290)
T ss_dssp             T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHHH
Confidence            99999999999999888776666666666666655  58999999999888888899999999999999999   99999


Q ss_pred             HHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          224 KYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ..+.+++..+|+ +...+.+++.|...+|+
T Consensus       222 ~~L~~al~~~~~-~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  222 ELLEEALEKDPN-DPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHCCC-CC-HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHHhCC
Confidence            999999999996 99999999999999886

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.18  E-value=3.6e-11  Score=100.29  Aligned_cols=185  Identities=16%  Similarity=0.059  Sum_probs=123.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYS  122 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~  122 (301)
                      ++|..+-..|.|++|+.++.+-+....      ...++++.+|.+|...|+                    ++.|.++|.
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            344555555666666666555444221      234566667777666542                    233444444


Q ss_pred             HHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHH
Q 022205          123 SLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYE  190 (301)
Q Consensus       123 ~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~  190 (301)
                      .-++....      ...++.++|..|+..|+|+.|+..-+.-+.+....      -.++.++|.++.-.|+++.|+++|+
T Consensus       180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            44332211      12356677777778888888888877666554322      3477899999999999999999999


Q ss_pred             HHHhh----CCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC----C-CchhHhhhHHHHHHHHHhhhc
Q 022205          191 ELILS----QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG----G-KNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       191 ~al~~----~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      ..+.+    ....  ....+.+|..|....+   ++.|+.|+++-+.+..    . ...|+.|.|+.++..++...+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence            87744    2222  3467889999999999   9999999998776532    1 688999999999999987443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=6.7e-10  Score=92.99  Aligned_cols=116  Identities=19%  Similarity=0.204  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      .....|..+++.|+|..|...|++++..-+.+               ..++.+++.|+.+++.|..|+..+.++|.++|+
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            34567899999999999999999988764322               346889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |..++++.|.++..+|+   ++.|+..|++++++.|+ |..+...|..|..++..
T Consensus       290 N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGE---YDLARDDFQKALKLEPS-NKAARAELIKLKQKIRE  340 (397)
T ss_pred             chhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999996 88888888888887765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.14  E-value=3.5e-11  Score=100.34  Aligned_cols=199  Identities=16%  Similarity=0.115  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------C
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP------L  130 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~  130 (301)
                      ...+|.++|.+|+..++|.+|+++-..-+..      .-..+...-.+|.++-..|.|++|+.++.+-+....      .
T Consensus        54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~  133 (639)
T KOG1130|consen   54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL  133 (639)
T ss_pred             HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence            5668999999999999999999875432221      124456667889999999999999999998876432      2


Q ss_pred             CHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHH
Q 022205          131 DPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQ  184 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~  184 (301)
                      ...+++++|.+|...|+                    ++.|.++|..-+++....      ..++-+||..|+-.|+|++
T Consensus       134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~  213 (639)
T KOG1130|consen  134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ  213 (639)
T ss_pred             hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence            35689999999998775                    233445555444443222      3467789999999999999


Q ss_pred             HHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC----C-CchhHhhhHHHHHHHHHh
Q 022205          185 AAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG----G-KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       185 A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~~~l~~~~~~l~~  253 (301)
                      |+..-+.=+.+....      -.++.++|.++.-+|+   ++.|.++|.+.+.+.-    . ......|.|+-.|.-+.+
T Consensus       214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e  290 (639)
T KOG1130|consen  214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE  290 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH
Confidence            999988777665333      3478999999999999   9999999999776532    1 456667888888888877


Q ss_pred             hhccCCccccc
Q 022205          254 LTKGRNKEDKE  264 (301)
Q Consensus       254 ~~~~~~~~~~~  264 (301)
                      ..++..-+.+.
T Consensus       291 ~~kAI~Yh~rH  301 (639)
T KOG1130|consen  291 VQKAITYHQRH  301 (639)
T ss_pred             HHHHHHHHHHH
Confidence            77766655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.14  E-value=3.3e-09  Score=75.79  Aligned_cols=96  Identities=19%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---CHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWREL  172 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l  172 (301)
                      .+++.+|.++-..|+.++|+..|++++...++.   ..++..+|..+...|++++|+..+++.+..+|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            466778888888888888888888888865544   347778888888888888888888888888787   66777778


Q ss_pred             HHHHHHcccHHHHHHHHHHHHh
Q 022205          173 AEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.13  E-value=1.4e-08  Score=84.93  Aligned_cols=169  Identities=19%  Similarity=0.177  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC---
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD---  131 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~---  131 (301)
                      ....|...|..+-..|++++|..+|.++....-      .....+...+.++.. .++++|+.+|++++...  ..+   
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHH
Confidence            456788889999999999999999999877542      223445556666655 49999999999999842  222   


Q ss_pred             -HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----
Q 022205          132 -PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----  199 (301)
Q Consensus       132 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----  199 (301)
                       ..++..+|.+|... |++++|+.+|+++++.....      ...+..+|.++...|+|++|+..|+++....-++    
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence             34788999999999 99999999999999875432      3467789999999999999999999998653221    


Q ss_pred             H---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          200 P---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       200 ~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .   ..+...+.|+...|+   +..|...+++....+|.
T Consensus       193 ~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTT
T ss_pred             hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence            1   345677889999999   99999999999999986

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.13  E-value=4.2e-09  Score=90.63  Aligned_cols=110  Identities=24%  Similarity=0.311  Sum_probs=52.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      .++++.|+.+++++...+|+   +...++.++...++-.+|+..+.+++..+|.+...+...+..+...++++.|+.+.+
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34444455555444444432   333344444444444445555555554444444444444444444455555555555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  189 (301)
                      +++...|++...|+.|+.+|...|+++.|+..+
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            555555544445555555555555555444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.12  E-value=5e-09  Score=90.16  Aligned_cols=120  Identities=19%  Similarity=0.073  Sum_probs=110.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      +-.++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+++++..+|.+...+...+..+...++++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            345566679999999999999998876   55668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      .|+.+.++++...|++...|..|+.+|..+|+   ++.|+..+..+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~  294 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence            99999999999999999999999999999999   99999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.12  E-value=4.8e-08  Score=77.60  Aligned_cols=169  Identities=14%  Similarity=0.065  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK  136 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  136 (301)
                      ....+++-|...++.|++++|.+.|+.+...+|..   ..+...++..+...+++++|+...++.+...|+++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            45677888999999999999999999999999844   567888999999999999999999999999988765   677


Q ss_pred             HHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHcccHHHHHHHHHH
Q 022205          137 RRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       137 ~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      ..|.+++..        .....|+..|+..+...|++.-                 --..+|..|.+.|.+..|+.-++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            777776653        2245788899999999999821                 113578999999999999999999


Q ss_pred             HHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          192 LILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       192 al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +++..|+.   .+++..+..+|+.+|-   .++|.+. .++|..++.
T Consensus       193 v~e~y~~t~~~~eaL~~l~eaY~~lgl---~~~a~~~-~~vl~~N~p  235 (254)
T COG4105         193 VLENYPDTSAVREALARLEEAYYALGL---TDEAKKT-AKVLGANYP  235 (254)
T ss_pred             HHhccccccchHHHHHHHHHHHHHhCC---hHHHHHH-HHHHHhcCC
Confidence            99887765   4678889999999998   7777665 456766654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=4.1e-09  Score=84.76  Aligned_cols=155  Identities=15%  Similarity=0.045  Sum_probs=117.9

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      +...+|..|+.++..-....|.+...+..+|.||....+|..|-.+|++.-...|.........++.+...+.+..|+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            55566777777777777777766667777777777777777777777777777776666666666666666666666554


Q ss_pred             HHHH------------------------------HHhcC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          155 LNKY------------------------------LETFM--ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       155 ~~~~------------------------------l~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      ....                              ++.-|  +++....+.|-+.++.|+++.|++-|+.+++...-++..
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence            4432                              11223  456778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      -++++-+++..|+   +..|+++..+.++.
T Consensus       181 AYniALaHy~~~q---yasALk~iSEIieR  207 (459)
T KOG4340|consen  181 AYNLALAHYSSRQ---YASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence            9999999999999   99999998887765

>PLN03077 Protein ECB2; Provisional

Probab=99.10  E-value=9.2e-08  Score=92.33  Aligned_cols=220  Identities=12%  Similarity=-0.005  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhh----------------------------------HHHHHHHHHH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRV----------------------------------GRLEGILLEA  110 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~----------------------------------~~~~a~~~~~  110 (301)
                      .|..+...+...|+.++|+.+|+++.... |+....                                  ...+-..|.+
T Consensus       457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k  536 (857)
T PLN03077        457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR  536 (857)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence            44555566677777777777777776432 322211                                  2223366777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFC  188 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~  188 (301)
                      .|++++|...|+..    +.+...|..+...|...|+.++|+.+|++..+.  .|+ ..++..+-..+...|.+++|..+
T Consensus       537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence            88888888888775    456778889999999999999999999988764  454 44566666778888999999999


Q ss_pred             HHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccch
Q 022205          189 YEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP  266 (301)
Q Consensus       189 ~~~al~~~p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~  266 (301)
                      |+......+  .+...+..+..++.+.|+   +++|.+.+++. ...|  +...|-.|..++..-++...+.    ....
T Consensus       612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~---~~eA~~~~~~m-~~~p--d~~~~~aLl~ac~~~~~~e~~e----~~a~  681 (857)
T PLN03077        612 FHSMEEKYSITPNLKHYACVVDLLGRAGK---LTEAYNFINKM-PITP--DPAVWGALLNACRIHRHVELGE----LAAQ  681 (857)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCChHHHH----HHHH
Confidence            998874432  234677888889999999   99999988874 3455  4555555444443222111000    0000


Q ss_pred             HHH------HHHHHHHHHHHHhhCC-hhhhHHHHHHhhccC
Q 022205          267 ELQ------SLAAAALEKDYKQRAP-AKLLLLTSALKSLKT  300 (301)
Q Consensus       267 ~~~------~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  300 (301)
                      ++.      ...-..+..+|...+. +....+...|++-++
T Consensus       682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~  722 (857)
T PLN03077        682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL  722 (857)
T ss_pred             HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence            110      0112234567777776 677778888877654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=2.6e-07  Score=78.94  Aligned_cols=202  Identities=17%  Similarity=0.186  Sum_probs=158.4

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHH----H-HHHHhCCChHHHHHHHHHHHHhCC----CchhhHHHHHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV----S-IAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGIL  107 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a-~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~  107 (301)
                      ++.+.+.+.....+..  .++......|.-|..+    + ..-+...+.+.+.++++.++++-|    ..+.+|.+.|..
T Consensus       336 g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f  413 (677)
T KOG1915|consen  336 GDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF  413 (677)
T ss_pred             CCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            5666666665555544  2222222345433322    2 233457899999999999999988    457889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      ..++.+...|...+-.++...|.+. .+.....+..+.++++.+..+|++.++..|.+..+|...|.+-..+|+++.|..
T Consensus       414 eIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa  492 (677)
T KOG1915|consen  414 EIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA  492 (677)
T ss_pred             HHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999865 455667778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC-HH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          188 CYEELILSQPTV-PL-YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       188 ~~~~al~~~p~~-~~-~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                      +|+-|+....-+ |. .|..+-..-...|.   ++.|...|++.++..+  +...|..++.
T Consensus       493 ifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerlL~rt~--h~kvWisFA~  548 (677)
T KOG1915|consen  493 IFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERLLDRTQ--HVKVWISFAK  548 (677)
T ss_pred             HHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHHHHhcc--cchHHHhHHH
Confidence            999999765433 32 45555566667788   9999999999999987  5667766664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=3.9e-08  Score=81.06  Aligned_cols=158  Identities=13%  Similarity=0.039  Sum_probs=98.7

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      +...+|..|+.+++-....+.+. .....-+|.|+++.|+|++|...|..+...+.-+...+.+++.+++..|.|.+|..
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            33455555555555444333211 12333345555555555555555555555444444455555555555555555544


Q ss_pred             HHHHHH--------------Hhc------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          154 WLNKYL--------------ETF------------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       154 ~~~~~l--------------~~~------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ...++-              +++            .+..+-...|+.+.+..-.|++|+.+|.+++.-+|.....-..+|
T Consensus       113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A  192 (557)
T KOG3785|consen  113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA  192 (557)
T ss_pred             HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence            433320              000            112344556788888888899999999999998888888888899


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      -||+++.-   ++.+.+.+.--++..|+
T Consensus       193 LCyyKlDY---ydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  193 LCYYKLDY---YDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHHhcch---hhhHHHHHHHHHHhCCC
Confidence            99999999   99998888888888886

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.07  E-value=6.4e-10  Score=71.79  Aligned_cols=64  Identities=31%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3445555555555555555555555555555555555555555555555555555444444433

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.2e-07  Score=82.85  Aligned_cols=187  Identities=17%  Similarity=0.038  Sum_probs=126.8

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (301)
                      .....++++..+-.++..       .|+..+++.....+.++.+.|++|+.+.+.-......+ ...+..+.|.++.++.
T Consensus        24 ~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKL   95 (652)
T ss_pred             cchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccH
Confidence            344455666666666655       56666666666667777777777775544333211111 1115667777777777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------------------------------CC
Q 022205          115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------------------------------MA  164 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~  164 (301)
                      ++|+..++   ..++.+..+....+++++++|+|++|..+|+..++.+                              |.
T Consensus        96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e  172 (652)
T KOG2376|consen   96 DEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE  172 (652)
T ss_pred             HHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence            77777776   3444445555666777777777777777777654332                              22


Q ss_pred             -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          165 -DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       165 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                       +.+.+++.+-++...|+|.+|++.+++++.+.       ..+        ..+...++.++..+|+   .++|...|..
T Consensus       173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~~  249 (652)
T KOG2376|consen  173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYVD  249 (652)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHH
Confidence             34567899999999999999999999995331       111        2367889999999999   9999999999


Q ss_pred             HhcccCC
Q 022205          229 TIDLTGG  235 (301)
Q Consensus       229 al~~~p~  235 (301)
                      .++.+|.
T Consensus       250 ~i~~~~~  256 (652)
T KOG2376|consen  250 IIKRNPA  256 (652)
T ss_pred             HHHhcCC
Confidence            9999885

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.07  E-value=1.2e-07  Score=79.27  Aligned_cols=167  Identities=16%  Similarity=0.056  Sum_probs=136.4

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------------------------------------------C
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------------------------------------------E   96 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------------------------------~   96 (301)
                      +.|.+..+..-...+|+..|++.+...++.++.+..-                                          .
T Consensus       182 ~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~  261 (400)
T COG3071         182 MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN  261 (400)
T ss_pred             hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence            3667777777778899999999999999999887221                                          1


Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      ++.+....+.-+...|+.++|.+....+++..-+.. ....++  ...-++...-++..++.++..|++|..+..||..+
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            233334455667788999999999999999775543 222122  23568889999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ++.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+   ...|...++.++.+
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~  390 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE---PEEAEQVRREALLL  390 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence            9999999999999999998875 5557889999999999   99999999999854

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=2.4e-08  Score=87.13  Aligned_cols=178  Identities=12%  Similarity=0.022  Sum_probs=137.8

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (301)
                      ..+...|+|++|.+...+++...|++..+.+..-.++.+.++|++|+...+.-......+ ...+..+.|+++.+..++|
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence            345678999999999999999999999999999999999999999995555433222222 2236889999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-------------------------------CH
Q 022205          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------------------------------VP  200 (301)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~  200 (301)
                      +..++   ..++.+.......|.+++++|+|++|+.+|+..++.+.+                               +.
T Consensus        99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy  175 (652)
T KOG2376|consen   99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY  175 (652)
T ss_pred             HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence            99999   566777778888999999999999999999998543221                               34


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc------CCCc---h-----hHhhhHHHHHHHHHhhhc
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GGKN---T-----KALFGICLCSSAIAQLTK  256 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~---~-----~~~~~l~~~~~~l~~~~~  256 (301)
                      ..+++.|.++...|+   |.+|++.+++++++.      .+.+   +     -....++.++..+|+..+
T Consensus       176 el~yN~Ac~~i~~gk---y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  176 ELLYNTACILIENGK---YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence            578899999999999   999999999994431      1111   1     123456667777776444

>PLN03077 Protein ECB2; Provisional

Probab=99.03  E-value=2.3e-08  Score=96.39  Aligned_cols=173  Identities=11%  Similarity=0.084  Sum_probs=130.9

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGN  147 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~  147 (301)
                      +...|.+.|++++|...|+..    +.+...|..+...|...|+.++|+..|++....  .|+ ...+..+...+.+.|.
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM  604 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence            345677788888888888775    456677888888888899999999999988774  354 3445666677888899


Q ss_pred             hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205          148 FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY  225 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~  225 (301)
                      +++|..+|+...+..+-  +...|..+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+   .+.+...
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~---~e~~e~~  679 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH---VELGELA  679 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHH
Confidence            99999999988754332  3567888889999999999999888875 34454 5667677667777788   8888888


Q ss_pred             HHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          226 YASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       226 ~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .++.++++|+ +...+.-++-.|...|+
T Consensus       680 a~~l~~l~p~-~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        680 AQHIFELDPN-SVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHHhhCCC-CcchHHHHHHHHHHCCC
Confidence            8888899885 77777777666665554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.03  E-value=2.3e-09  Score=70.19  Aligned_cols=67  Identities=24%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  205 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  205 (301)
                      ..+|...+++++|+.++++++..+|+++..|..+|.++...|++++|+..|+++++..|+++.+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            3455566666666666666666666666666666666666666666666666666666665554433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.01  E-value=7.1e-10  Score=90.68  Aligned_cols=180  Identities=9%  Similarity=-0.027  Sum_probs=134.0

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  147 (301)
                      -..|..|+.+|.|++|++||.+.+..+|.++..+.++|..|++..+|..|...+..++.++.....+|.+.|..-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHH-----------------------------------HHHHHHcccHHHHHHHHHHH
Q 022205          148 FPTAIEWLNKYLETFMADHDAWREL-----------------------------------AEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~l-----------------------------------g~~~~~~~~~~~A~~~~~~a  192 (301)
                      ..+|.+.++.++++.|++.+..-.+                                   |..+...|.++.++.++-..
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~  260 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP  260 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence            9999999999999999875543322                                   22333334444444444433


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      +....++...-.+ +..+.+..+   ++.++....+++..+|. ...+..+-+-+...++
T Consensus       261 ~A~~~~~~~L~~~-~~~~~KI~~---~~~~~~~~~~~~~~~~s-~~~~~s~~~~A~T~~~  315 (536)
T KOG4648|consen  261 RATIDDSNQLRIS-DEDIDKIFN---SNCGIIEEVKKTNPKPT-PMPDTSGPPKAETIAK  315 (536)
T ss_pred             ccccCccccCccc-HHHHHHHhh---cchhHHHHHHhcCCCCC-cCcccCCCchhHHHHh
Confidence            3333222222222 555566666   77888888888777774 5555544444444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1.5e-08  Score=76.98  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      +..-|.-++..|+|.+|..-|..++...|..+     -.+.+.|.++.+++.++.|+..+.++++++|.+..++.+.|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            44557778888889999999999998888764     3577889999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          210 LYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       210 ~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |.++..   +++|+..|.+.++.+|.
T Consensus       178 yek~ek---~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  178 YEKMEK---YEEALEDYKKILESDPS  200 (271)
T ss_pred             HHhhhh---HHHHHHHHHHHHHhCcc
Confidence            999988   99999999999999996

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.01  E-value=1.6e-09  Score=69.91  Aligned_cols=65  Identities=23%  Similarity=0.214  Sum_probs=40.5

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (301)
Q Consensus       109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg  173 (301)
                      +..|++++|+..|++++..+|++..++..++.++...|++++|...+++++..+|+++..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34566666666666666666666666666666666666666666666666666666555555444

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.00  E-value=2.3e-08  Score=80.14  Aligned_cols=103  Identities=19%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE  174 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~  174 (301)
                      .+..|.-+...|+|..|...|...++..|++   +.++++||.+++.+|+++.|...|..+++..|.+   |++++.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4666677777788888888888888777765   4477888888888888888888888888877665   677888888


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      +...+|+.++|..+|+++++..|+.+.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            88888888888888888888888776654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=3.2e-08  Score=79.74  Aligned_cols=182  Identities=17%  Similarity=0.107  Sum_probs=142.8

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      ..+...+++........       +|.....+..+|.||+...+|..|-.+++++-..+|......+..+..+...+.+.
T Consensus        23 d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   23 DARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            34445566655555544       66667778889999999999999999999999999988888888888888888888


Q ss_pred             HHHHHHHHHHh------------------------------cCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205          116 EAEKAYSSLLE------------------------------DNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (301)
Q Consensus       116 ~A~~~~~~al~------------------------------~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (301)
                      .|+........                              .-|  ++.....+.|.+.++.|+++.|++-|+.+++...
T Consensus        96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            87776543321                              223  4566788899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----CCCC----------------H---------HHHHHHHHHHHHcC
Q 022205          164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILS----QPTV----------------P---------LYHLAYADVLYTLG  214 (301)
Q Consensus       164 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~----------------~---------~~~~~la~~~~~~~  214 (301)
                      -+|..-++++.++++.|++..|+++....+..    .|..                +         .+....+.++++.|
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~  255 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR  255 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            99999999999999999999999988887754    2321                1         14455677888888


Q ss_pred             CCCcHHHHHHHHH
Q 022205          215 GVDNILLAKKYYA  227 (301)
Q Consensus       215 ~~~~~~~A~~~~~  227 (301)
                      +   ++.|.+.+.
T Consensus       256 n---~eAA~eaLt  265 (459)
T KOG4340|consen  256 N---YEAAQEALT  265 (459)
T ss_pred             c---HHHHHHHhh
Confidence            8   877776654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.99  E-value=2.6e-07  Score=73.94  Aligned_cols=169  Identities=21%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-LLEAKGLWAEAEKAYSSLLEDNP---LDPVLHKRR  138 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l  138 (301)
                      ....+...+......+++..++..+..+....+.........+. ++...|+++.|...+.+++..+|   .........
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  173 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL  173 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence            33344444444444444555555555555444433333333333 44445555555555555544333   223333333


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  217 (301)
                      +..+...++++.++..+.+++...+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.  
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  251 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR--  251 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC--
Confidence            34444445555555555555555544 344455555555555555555555555555544444444444444444444  


Q ss_pred             cHHHHHHHHHHHhcccC
Q 022205          218 NILLAKKYYASTIDLTG  234 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p  234 (301)
                       ++.+...+.+++...|
T Consensus       252 -~~~~~~~~~~~~~~~~  267 (291)
T COG0457         252 -YEEALEALEKALELDP  267 (291)
T ss_pred             -HHHHHHHHHHHHHhCc
Confidence             5555555555555444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.99  E-value=2.7e-08  Score=72.27  Aligned_cols=85  Identities=16%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK  136 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  136 (301)
                      ....++.-|...++.|+|.+|++.|+.+...+|.   ...+.+.++.+++..+++++|+..+++.++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3445666788888888888888888888888873   4567778888888888888888888888888887754   677


Q ss_pred             HHHHHHHHcCC
Q 022205          137 RRVAIAKAQGN  147 (301)
Q Consensus       137 ~l~~~~~~~g~  147 (301)
                      ..|.+++.+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            77777776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.98  E-value=8.7e-08  Score=73.81  Aligned_cols=169  Identities=17%  Similarity=0.094  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      +....++..|..|-..|-+.-|..-|.+++.+.|+-+.+...+|..+...|+|+.|.+.|...++.||.+-.+..+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            46677778888888889899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHH--HHHHH--------------HHHH--------------HHcccHHHHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHD--AWREL--------------AEIY--------------VSLQMYKQAAFCYEE  191 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--------------g~~~--------------~~~~~~~~A~~~~~~  191 (301)
                      +..-|++.-|...+.+.-..+|++|-  .|..+              ..-+              +..|+..+ ...+++
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~  221 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMER  221 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHH
Confidence            99999999999999888888888863  33322              1111              11122111 112333


Q ss_pred             HHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          192 LILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       192 al~~~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      +..-..++       .+.++.+|.-+...|+   .++|...|.-++.-+-
T Consensus       222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~---~~~A~~LfKLaiannV  268 (297)
T COG4785         222 LKADATDNTSLAEHLTETYFYLGKYYLSLGD---LDEATALFKLAVANNV  268 (297)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhH
Confidence            33322233       3467888888899999   9999999988887543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.97  E-value=5.8e-07  Score=85.60  Aligned_cols=182  Identities=15%  Similarity=0.118  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      .|.+|.++-..|   |.-+...+.|+++.+.. +...++..+..+|...+.+++|.++++..++...+...+|..++..+
T Consensus      1499 iWiA~lNlEn~y---G~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAY---GTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred             HHHHHHhHHHhh---CcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            555555554443   77788888999988753 34557778889999999999999999999998888899999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      +.+++-+.|..++.+++..-|.  +.......|.+.++.|+.+.+...|+..+.-.|.-...|..+...-.+.|+   .+
T Consensus      1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~ 1651 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IK 1651 (1710)
T ss_pred             hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HH
Confidence            9999999999999999999998  778888999999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHhcccCC-CchhHhhhHHHHHHHH
Q 022205          221 LAKKYYASTIDLTGG-KNTKALFGICLCSSAI  251 (301)
Q Consensus       221 ~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l  251 (301)
                      .++..|++++.+.=. ...+.+|..-+.|.+-
T Consensus      1652 ~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred             HHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence            999999999876422 4777777766666553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.96  E-value=3.3e-08  Score=70.66  Aligned_cols=96  Identities=20%  Similarity=0.146  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY  206 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  206 (301)
                      .+++.++.++-..|+.++|+.+|++++......   ..++..+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999976554   568899999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                      +.++...|+   .++|+..+-.++.
T Consensus        82 Al~L~~~gr---~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGR---PKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHH
Confidence            999999999   9999999988775

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.93  E-value=9.1e-07  Score=70.72  Aligned_cols=182  Identities=21%  Similarity=0.210  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA-  140 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-  140 (301)
                      .......+..+...+++..+...+.....  ..+.....+...+......+++..++..+..++...+.........+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            55667778888999999999999999987  678888899999999999999999999999999988887666666666 


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCC
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~  216 (301)
                      ++...|+++.|...+.+++..+|   .........+..+...++++.|+..+.+++...|. ....+..++..+...++ 
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK-  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc-
Confidence            89999999999999999988777   34666777777788899999999999999999999 69999999999999999 


Q ss_pred             CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                        +..|...+..++...|. ....+..++..+.
T Consensus       218 --~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~  247 (291)
T COG0457         218 --YEEALEYYEKALELDPD-NAEALYNLALLLL  247 (291)
T ss_pred             --HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHH
Confidence              99999999999999985 4455555554444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.92  E-value=1e-08  Score=67.15  Aligned_cols=65  Identities=28%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR  170 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  170 (301)
                      .++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.92  E-value=8.1e-08  Score=69.83  Aligned_cols=104  Identities=19%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR  170 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~  170 (301)
                      .+..++..|.-.+..|+|.+|++.|+.+....|..   ..+...++.+|+..|++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            34556666777777777777777777777766654   33666777777777777777777777777777663   4566


Q ss_pred             HHHHHHHHccc---------------HHHHHHHHHHHHhhCCCCH
Q 022205          171 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       171 ~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~  200 (301)
                      ..|.+++.+..               ...|...|++.+...|++.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            66666666544               4555555555555555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=1.6e-07  Score=72.33  Aligned_cols=149  Identities=19%  Similarity=0.083  Sum_probs=118.7

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      .+..++.+|.+|-..|-+.-|.-.|.+++...|+.+.+++.+|..+...|+++.|...|...++++|..--+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +--|+++-|..-+.+-.+.+|++|.--..+-..- ..-+   ..+|...+.+-.+...    +.+||..++..-+|+
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~d---P~~A~tnL~qR~~~~d----~e~WG~~iV~~yLgk  212 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLD---PKQAKTNLKQRAEKSD----KEQWGWNIVEFYLGK  212 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCC---HHHHHHHHHHHHHhcc----HhhhhHHHHHHHHhh
Confidence            9999999999999999999999985322221111 2223   7777776654433322    234555555555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=1.4e-06  Score=74.58  Aligned_cols=183  Identities=13%  Similarity=0.144  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ...|...|+--..++++..|..++++++..+..+...|...+.+-+.......|...+.+++..-|.--..|+....+.-
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34455566667778999999999999999998899999999999999999999999999999999999899999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      .+|+..-|.++|++.++..|+ ..+|......-.+-+.++.|..+|++-+-..|+ ...|...+..-.+.|+   ..-|.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~aR  227 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALAR  227 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHHH
Confidence            999999999999999999995 788888888888889999999999999988875 6678889999999999   99999


Q ss_pred             HHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          224 KYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ..|.+|++.-.+.......-.+.+....
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe  255 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            9999999875542333333334333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.87  E-value=1.2e-08  Score=83.53  Aligned_cols=109  Identities=20%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      .-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++...|..|...++.++.++.....+|...|.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      +..+|.+.++.+|.+.|.+.+....++.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            99999999999999999987766555544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=5.9e-08  Score=73.76  Aligned_cols=105  Identities=28%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      .-|.-++..|+|.+|..-|..++...|..+.     .|.+.|.+..+++.++.|+..+.++++++|....++...+.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            3466777778888888888888887776543     56677778888888888888888888888888888888888888


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      +...|++|+..|.++++.+|....+....+
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            888888888888888888887665544443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.9e-06  Score=68.54  Aligned_cols=160  Identities=13%  Similarity=-0.024  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-  144 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  144 (301)
                      ....-|..++..|++++|++....     ..+..+..+-..++.++.+++-|...+++....+.+  ..+..|+..+.. 
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l  182 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL  182 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence            333447788888999999888765     334556667778888889999999988888776643  344556665554 


Q ss_pred             ---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          145 ---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       145 ---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                         .+.+.+|.-+|++.-+..|..+......+.|+..+|+|++|...++.++..++++|..+.++-.+-...|.   ..+
T Consensus       183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~~  259 (299)
T KOG3081|consen  183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DAE  259 (299)
T ss_pred             hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---ChH
Confidence               35578888899998887888888899999999999999999999999999999999999999888888887   555


Q ss_pred             HHHHH-HHHhcccCC
Q 022205          222 AKKYY-ASTIDLTGG  235 (301)
Q Consensus       222 A~~~~-~~al~~~p~  235 (301)
                      +..-+ .+.....|.
T Consensus       260 ~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  260 VTERNLSQLKLSHPE  274 (299)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            54444 444444554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.86  E-value=5.5e-08  Score=72.99  Aligned_cols=94  Identities=21%  Similarity=0.267  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc--
Q 022205          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--  181 (301)
Q Consensus       114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~--  181 (301)
                      |+.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|++++.++|+...++..+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            4556666666666666666666666655554422          3456666666677777777777777777665532  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          182 ---------YKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       182 ---------~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                               |++|..+|++|...+|++..+...|.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                     56667777777777777665544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.85  E-value=1.6e-08  Score=86.71  Aligned_cols=70  Identities=14%  Similarity=-0.004  Sum_probs=64.8

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      .+|+++.+++++|.+|...|++++|+..|+++++++|+++.+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            578899999999999999999999999999999999999854   9999999999999999999999999973

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.85  E-value=7.2e-08  Score=77.33  Aligned_cols=98  Identities=17%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYAD  208 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  208 (301)
                      .+..+.-+...|+|..|...|...++..|++   +.+++-||.+++.+|++++|...|..+.+-.|++   |++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6888889999999999999999999999987   6789999999999999999999999999988766   688999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          209 VLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       209 ~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +...+|+   .++|...|+++++.-|+
T Consensus       224 ~~~~l~~---~d~A~atl~qv~k~YP~  247 (262)
T COG1729         224 SLGRLGN---TDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHhcC---HHHHHHHHHHHHHHCCC
Confidence            9999999   99999999999999997

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.83  E-value=1.4e-06  Score=65.72  Aligned_cols=149  Identities=19%  Similarity=0.110  Sum_probs=114.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWL  155 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  155 (301)
                      .=|.+....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. ....++..+..+++..+..+++..|...+
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            344555555555555555533 3456778888899999999999998887 55677888888999999999999999999


Q ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          156 NKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       156 ~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      ++..+.+|.  +|+....+|.++...|.+.+|...|+.++...|+ +.+...++..+..+|+   ..+|..-|....
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v~  220 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAVV  220 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHHH
Confidence            999988874  4777888899999999999999999999988875 5666778888888887   666665555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.82  E-value=1.6e-07  Score=78.43  Aligned_cols=171  Identities=15%  Similarity=0.154  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC-
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LD-  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~-  131 (301)
                      .....|...+.++.+. ++++|+.++++++..+-      .-...+..+|.+|... |++++|++.|++++....  +. 
T Consensus        73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            3455666666665554 99999999999998652      2245678899999998 999999999999998432  12 


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 022205          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-  200 (301)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-  200 (301)
                         ..++..+|.++...|+|++|+..|++.....-++       ...++..+.|++..|++..|...+++....+|... 
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               2377889999999999999999999998754221       23566788899999999999999999999988552 


Q ss_pred             --H--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          201 --L--YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       201 --~--~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                        +  ....+-. .+..|+.+.+..|+..|...-+++|
T Consensus       232 s~E~~~~~~l~~-A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  232 SREYKFLEDLLE-AYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             SHHHHHHHHHHH-HHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHcccCccHH
Confidence              2  2333323 3466777779999999998888877

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.81  E-value=3.2e-08  Score=84.97  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (301)
                      .+|+++..++.+|..+...|+|++|+..|++++..+|++..+   |+++|.+|..+|++++|+..++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            468899999999999999999999999999999999999854   9999999999999999999999999973

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.80  E-value=1.2e-06  Score=69.76  Aligned_cols=155  Identities=16%  Similarity=0.190  Sum_probs=127.4

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AW  169 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~  169 (301)
                      ..+..++..|...+..|++++|+..|+.+...+|..+.   +...++.++.+.+++++|+...++.+.++|.++.   ++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            34567888899999999999999999999998887654   8889999999999999999999999999998854   56


Q ss_pred             HHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHHHH
Q 022205          170 RELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKK  224 (301)
Q Consensus       170 ~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~~~~A~~  224 (301)
                      +..|.+++..        .-...|+..|+..+...|+...                 --...|..|.+.|.   +..|+.
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~n  188 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAIN  188 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHH
Confidence            7777777654        2356889999999999998742                 12346788999999   999999


Q ss_pred             HHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205          225 YYASTIDLTGG--KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       225 ~~~~al~~~p~--~~~~~~~~l~~~~~~l~~  253 (301)
                      .++.+++.-|+  ....++..+..++..+|-
T Consensus       189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         189 RFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence            99999998776  345666777777777775

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.80  E-value=6.5e-08  Score=72.59  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc----------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 022205          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ----------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG--  215 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--  215 (301)
                      |+.|.+.++.....+|.+++.+++.|.++..+.          .+++|+.-|+.++.++|+...+++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            578889999999999999999999999988763          35788999999999999999999999999988764  


Q ss_pred             --C----CcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          216 --V----DNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       216 --~----~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                        .    +.|++|..+|++|...+|+ +.-..-.|-+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence              1    3489999999999999996 5444334433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.78  E-value=5.9e-06  Score=73.34  Aligned_cols=179  Identities=13%  Similarity=0.085  Sum_probs=143.9

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--------  130 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------  130 (301)
                      .-..|..+|..|-..|+.+.|..+|+++.+.. +   +-..+|...|..-.+..+++.|+.+.+++...-..        
T Consensus       386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~  465 (835)
T KOG2047|consen  386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN  465 (835)
T ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence            45677788999999999999999999999864 3   33678889999999999999999999998762211        


Q ss_pred             ----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CC
Q 022205          131 ----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT  198 (301)
Q Consensus       131 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~  198 (301)
                                +..+|..++...-..|-++....+|++.+++.--.|....+.|..+.....+++|.+.|++.+.+.  |.
T Consensus       466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~  545 (835)
T KOG2047|consen  466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN  545 (835)
T ss_pred             CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence                      234788888888899999999999999999999999999999999999999999999999999875  44


Q ss_pred             CHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205          199 VPLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (301)
Q Consensus       199 ~~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (301)
                      -..+|..+-.-+.. .|. -..+.|...|++|++..|..+.+..|
T Consensus       546 v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~Cpp~~aKtiy  589 (835)
T KOG2047|consen  546 VYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDGCPPEHAKTIY  589 (835)
T ss_pred             HHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45566554333322 221 12999999999999999974555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=8.1e-07  Score=73.46  Aligned_cols=150  Identities=13%  Similarity=0.003  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------------cC---
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--------------DN---  128 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~---  128 (301)
                      .-.-+|.+++..|+|++|+..+.-+...+.-+...+..+|.+++..|.|.+|.....++-+              .+   
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence            3444788999999999999999999987767778899999999999999999887766522              01   


Q ss_pred             ---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205          129 ---------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       129 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  199 (301)
                               .+..+-...++.++...-.|.+|+.+|.+++..+|+-.....+++.||++..-++-+.+.+.-.+...|+.
T Consensus       139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence                     01122344566677777789999999999999999988888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 022205          200 PLYHLAYADVLYTLGG  215 (301)
Q Consensus       200 ~~~~~~la~~~~~~~~  215 (301)
                      +.+....+..++++=+
T Consensus       219 tiA~NLkacn~fRl~n  234 (557)
T KOG3785|consen  219 TIAKNLKACNLFRLIN  234 (557)
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9998888888877644

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=3.7e-06  Score=66.87  Aligned_cols=133  Identities=16%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c--CCCHHHHHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----F--MADHDAWREL  172 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~l  172 (301)
                      +.+.+..++...|.|.-.+..+.++++.+ |.++.....+|.+.++.|+.+.|..+|+++-+.    +  .....+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44455555555566666666666666555 444555555666666666666665555532221    1  1223344455


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +.+|.-.+++..|...|.+++..+|.++.+-.+.|-|...+|+   ...|++..+.++...|.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence            5555556666666666666666666666666666666666666   66666666666666665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.71  E-value=3.1e-08  Score=65.72  Aligned_cols=62  Identities=26%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQ---P-T---VPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p-~---~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                      .++.++|.+|...|++++|+.+|++++.+.   + +   ...++.++|.++...|+   +++|+.+|+++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Confidence            344444444444444444444444444321   1 1   12234445555555555   5555555555444

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.71  E-value=3.4e-06  Score=63.68  Aligned_cols=139  Identities=19%  Similarity=0.192  Sum_probs=116.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcccHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      +....+.=+.+....-..+.+...|.... .+.+|......|++.+|...|++++. .+-+++..+..++.+.+..+++.
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence            34444445666666666666777776544 67899999999999999999999886 56788999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205          184 QAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  247 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~  247 (301)
                      .|...+++..+.+|..  |..+..+|..+...|.   +.+|...|+.++..-|+...+++|+--++
T Consensus       142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg~~ar~~Y~e~La  204 (251)
T COG4700         142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK---YADAESAFEVAISYYPGPQARIYYAEMLA  204 (251)
T ss_pred             HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC---chhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999988744  6778889999999999   99999999999999998778888875543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.71  E-value=6.4e-06  Score=78.83  Aligned_cols=182  Identities=13%  Similarity=0.075  Sum_probs=152.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-C----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  134 (301)
                      +|+....|.+.....++.++.+.|..++++++..- +    .-..+|..+-++...-|.-+...+.|++|.+.. +-..+
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTV 1532 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHH
Confidence            56666777777778899999999999999999743 3    223455555555555577777888999988754 23557


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT  212 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~  212 (301)
                      +..|..+|...+.+++|.++|+..++.+......|..+|..++.+++-+.|...+.+|++.-|.  +.......|++-++
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            8899999999999999999999999999988999999999999999999999999999999998  67788889999999


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                      .|+   .+.++..|+-.+.-.|. -...|.-+..
T Consensus      1613 ~GD---aeRGRtlfEgll~ayPK-RtDlW~VYid 1642 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPK-RTDLWSVYID 1642 (1710)
T ss_pred             cCC---chhhHHHHHHHHhhCcc-chhHHHHHHH
Confidence            999   99999999999999996 5555554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=2.4e-05  Score=62.43  Aligned_cols=206  Identities=16%  Similarity=0.056  Sum_probs=146.5

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcC---Cch---hHHHHHHHHHHHHhCCChHHHHHHHHHHHH-hCCC-chhhHHHHHHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSAL---GPD---VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK-QFPE-SKRVGRLEGILL  108 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~~a~~~  108 (301)
                      +..+..+.+++..+..++....+   .+.   ...+...++...-.-++.++-+.-+...+. .... +.-....-|.++
T Consensus        39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~  118 (299)
T KOG3081|consen   39 TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY  118 (299)
T ss_pred             chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence            55566666777766554432221   111   122222333333333444444444443333 2223 334555667889


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHH
Q 022205          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQ  184 (301)
Q Consensus       109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~  184 (301)
                      .+.|++++|+.....     ..+.++...-..++.++.+++-|.+.+++....+.  -.+...||..+...    +.+.+
T Consensus       119 ~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  119 MHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             hcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhh
Confidence            999999999987776     34566666667888999999999999999988764  34455566655543    46899


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |..+|+..-...|..+......+.|+..+|+   +++|...++.++..+++ +...+.++..|....|.
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK  256 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence            9999999998888899999999999999999   99999999999999996 99999999999988885

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=4.7e-06  Score=66.30  Aligned_cols=173  Identities=9%  Similarity=0.037  Sum_probs=93.3

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      |...-..|+..+.+.-+..+....       ..+-.........+..+..+++-+.      .+.+.+..++...|.|.-
T Consensus       129 Ae~~~~lgnpqesLdRl~~L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~i  195 (366)
T KOG2796|consen  129 AELQQYLGNPQESLDRLHKLKTVV-------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVL  195 (366)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHH-------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhh
Confidence            333444566666655554444311       1111222222223445555555433      244555566666666666


Q ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          151 AIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       151 A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      ....+.+.++.+ |.+|.....||.+-++.|+.+.|..+|+.+-+.+      ..+..++.+.+.+|.-.++   +..|.
T Consensus       196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn---~a~a~  272 (366)
T KOG2796|consen  196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN---FAEAH  272 (366)
T ss_pred             hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc---hHHHH
Confidence            666666666665 4556666666666666666666666666443322      1223345555555666666   66666


Q ss_pred             HHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCc
Q 022205          224 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK  260 (301)
Q Consensus       224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~  260 (301)
                      ..|.+++..||. ++.+..+-++|..-+++..++.+.
T Consensus       273 r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~  308 (366)
T KOG2796|consen  273 RFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQ  308 (366)
T ss_pred             HHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHH
Confidence            666666666663 666666666666666655544433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.66  E-value=4.6e-06  Score=81.25  Aligned_cols=164  Identities=12%  Similarity=0.049  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----  132 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----  132 (301)
                      ....+..++..|++++|...+..+....+.         .......++.++...|++++|...++.++...|...     
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence            344566777888889888888877664331         123344567778888999999999998887544322     


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--------
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--------  198 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------  198 (301)
                      .+...+|.++...|++++|...+.+++......      ..++..+|.++...|+++.|...+++++.....        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            255677888888999999999988888654321      235567888888899999999988888865221        


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      ....+..+|.+++..|+   +++|...+.+++...
T Consensus       572 ~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~  603 (903)
T PRK04841        572 HEFLLRIRAQLLWEWAR---LDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHhHHhh
Confidence            12345567888888898   999999988887763

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.66  E-value=7.9e-06  Score=67.93  Aligned_cols=191  Identities=14%  Similarity=0.087  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  131 (301)
                      ...++.+++..+-...++.+++.+-+.-+..-..+     ..+...+|..+..++.++++++.|+.++.....+      
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE  161 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE  161 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence            45667777877777778888888877666543222     2566778999999999999999999999854332      


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----D------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ-----  196 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----  196 (301)
                      ..++..+|.++....++++|.-+..++.++..+    +      ..+.+.++..+...|..-+|.++.+++.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            237889999999999999999999998876432    2      3456788999999999999999999998764     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----CchhHhhhHHHHHHHHHhhhc
Q 022205          197 -PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       197 -p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~l~~~~~~l~~~~~  256 (301)
                       |........+|++|...|+   .+.|..-|+.|......     ..+.++-|.+.|...+.-..+
T Consensus       242 ra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k  304 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNK  304 (518)
T ss_pred             hHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence             2234567789999999999   99999999999876332     467788888888888766444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.65  E-value=3.5e-08  Score=65.47  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---C----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---M----ADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      |+-..++..+|.++...|++++|+.+|+++++..   +    ..+.++.++|.++...|++++|+.++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556789999999999999999999999999762   2    22567899999999999999999999999976

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=2.2e-06  Score=70.47  Aligned_cols=157  Identities=11%  Similarity=-0.113  Sum_probs=131.8

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcC
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQG  146 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g  146 (301)
                      +...+-.|++.+|-..++++++.+|.+.-++...-..++..|+...-...+++.+.. +|+-   ..+...++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            344556788899999999999999999999888889999999999999999999987 6665   456667788888999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHH
Q 022205          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      -+++|.+.-.+++++||.+..+...++.++...|++.++.++..+.-.......    .-|...|.++...+.   ++.|
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~a  266 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKA  266 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHH
Confidence            999999999999999999999999999999999999999998877543332221    135566777888888   9999


Q ss_pred             HHHHHHHh
Q 022205          223 KKYYASTI  230 (301)
Q Consensus       223 ~~~~~~al  230 (301)
                      ++.|.+-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            99998865

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.64  E-value=1.3e-06  Score=72.72  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      |..+.....+.+..+.|..+|.++....+....+|...|.+.... ++.+.|..+|+.+++..|.++..|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            334444444444455555555555544444455555555554442 3333355555555555555555555555555555


Q ss_pred             ccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          180 QMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ++.+.|...|++++..-|...   .+|..+...-...|+   .+...+.+.++.+..|
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFP  138 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhh
Confidence            555555555555555444333   345555555555555   5555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=4.4e-05  Score=59.85  Aligned_cols=218  Identities=17%  Similarity=0.063  Sum_probs=145.3

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---  133 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---  133 (301)
                      +....+.+-|..+--..+|+.|=..|-++-+..-     ++....+.-+.-.++.++..+|+.++++++++..+...   
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHH
Confidence            4455666666666667777777777766655431     22333334444444557999999999999986654433   


Q ss_pred             ---HHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH--
Q 022205          134 ---LHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL--  201 (301)
Q Consensus       134 ---~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--  201 (301)
                         .+..+|.+|..- .++++|+.+|+++-+.....      -..+...+..-...++|.+|+..|+++....-+++.  
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence               344677777654 88999999999998876543      234556677777889999999999999877666643  


Q ss_pred             -----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhhHHHHHHHHHhhhc----cCCcccccchHHHHH
Q 022205          202 -----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIAQLTK----GRNKEDKESPELQSL  271 (301)
Q Consensus       202 -----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l~~~~~----~~~~~~~~~~~~~~~  271 (301)
                           ..+.-|.|++...+   .-.+...+++-.+++|. ...|-.--+......+.....    ...+......+|..|
T Consensus       192 ys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W  268 (288)
T KOG1586|consen  192 YSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQW  268 (288)
T ss_pred             hHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHH
Confidence                 34556788888888   88888888888899997 555554444443333332110    111122336778888


Q ss_pred             HHHHHHHHHHh
Q 022205          272 AAAALEKDYKQ  282 (301)
Q Consensus       272 ~~~~l~~~~~~  282 (301)
                      ....|..|-+.
T Consensus       269 ~ttiLlkiK~s  279 (288)
T KOG1586|consen  269 KTTILLKIKKS  279 (288)
T ss_pred             HHHHHHHHHHH
Confidence            88877777553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.59  E-value=2.7e-06  Score=60.31  Aligned_cols=92  Identities=22%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSL  179 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~  179 (301)
                      .|..+...|+.+.|++.|.+++...|..+.+|++.++.+.-+|+.++|+..+++++++....    ..++...|.+|...
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            34444555555555555555555555555555555555555555555555555555553322    22344445555555


Q ss_pred             ccHHHHHHHHHHHHhh
Q 022205          180 QMYKQAAFCYEELILS  195 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~  195 (301)
                      |+-+.|...|+.+-++
T Consensus       129 g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQL  144 (175)
T ss_pred             CchHHHHHhHHHHHHh
Confidence            5555555555444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.57  E-value=4.5e-06  Score=59.20  Aligned_cols=101  Identities=11%  Similarity=0.010  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVL  210 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~  210 (301)
                      +-.-|.+....|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+.++|+..+.+++++..+..    .++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            345677888999999999999999999999999999999999999999999999999999875443    3688899999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~  239 (301)
                      ...|+   -+.|...|+.+-++.+. ..+
T Consensus       126 Rl~g~---dd~AR~DFe~AA~LGS~-FAr  150 (175)
T KOG4555|consen  126 RLLGN---DDAARADFEAAAQLGSK-FAR  150 (175)
T ss_pred             HHhCc---hHHHHHhHHHHHHhCCH-HHH
Confidence            99999   99999999999998763 443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.56  E-value=8.2e-06  Score=79.52  Aligned_cols=167  Identities=15%  Similarity=0.057  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHH
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------DPV  133 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~  133 (301)
                      .....++..+...|+++.|...++.++...|...     .+...+|.++...|++++|...+++++.....      ...
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            3444567888899999999999999988655322     34567888899999999999999999874322      123


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----CH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----VP  200 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~  200 (301)
                      ++..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+++++.....     ..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            5677899999999999999999998886321        1234567899999999999999999999875321     24


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ..+..+|.++...|+   ++.|...+.++..+.+
T Consensus       613 ~~~~~la~~~~~~G~---~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        613 QCLAMLAKISLARGD---LDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence            456678999999999   9999999999977643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.56  E-value=8.3e-05  Score=63.48  Aligned_cols=169  Identities=14%  Similarity=-0.003  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVL  134 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~  134 (301)
                      ...+..++-.+|-+..+|+.-+.+.+.+-..    .++.+.+..+.|.++-+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4556678888899999999999999988876    45677888899999999   8999999999999 55677888999


Q ss_pred             HHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH-H------H-hh--
Q 022205          135 HKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE-L------I-LS--  195 (301)
Q Consensus       135 ~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-a------l-~~--  195 (301)
                      +..+|.+|...         ...++|+..|.++.+.+|+. ..-.+++.++...|.-.....-.++ .      + +.  
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            99999998652         24789999999999999643 3344566666666542222111111 1      1 11  


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          196 --QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       196 --~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                        .-.+...+..++.+....|+   +++|..++++++++.|.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence              12344556778888999999   99999999999999885

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.1e-07  Score=72.68  Aligned_cols=91  Identities=14%  Similarity=0.020  Sum_probs=59.8

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      |..|+....|+.|+.+|.+++..+|..+..+...+.++++..+++.+....+++++.+|+...+.+.+|.+......+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            55555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHh
Q 022205          151 AIEWLNKYLET  161 (301)
Q Consensus       151 A~~~~~~~l~~  161 (301)
                      |+..+.++..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            66666666443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.55  E-value=4.4e-06  Score=76.65  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=119.3

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      .++.+++..|+....++++.+|+.+.+..+.|.+++++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            36779999999999999999999999999999999999999999999988888888888899999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      +|++++..+|+ -.....+-++|.+.+.|.+-.+.--+..+..|.++........+.+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence            99999999999 8888889999999999887666666666677887765544444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.53  E-value=2.4e-07  Score=53.83  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      .+|..+|.+|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345555555555555555555555555555555555555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.50  E-value=6.3e-06  Score=68.72  Aligned_cols=138  Identities=11%  Similarity=0.057  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  144 (301)
                      +|..+.....+.+..+.|..+|.++.+..+.+..+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455556666777779999999999996556678888888888666 5677779999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          145 QGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      .|+.+.|..+|++++..-|...   ..|......-...|+.+...++.+++.+..|.+....
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence            9999999999999998877655   5888888888889999999999999999988865543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=3.8e-07  Score=71.26  Aligned_cols=93  Identities=14%  Similarity=-0.007  Sum_probs=84.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      -.|..++...+|+.|+..|.++|..+|..+..|.+.+.++++..+++.+.....+++++.|+.....+.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34667777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 022205          183 KQAAFCYEELILS  195 (301)
Q Consensus       183 ~~A~~~~~~al~~  195 (301)
                      +.|+.+++++..+
T Consensus        95 ~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   95 DEAIKVLQRAYSL  107 (284)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999999654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.47  E-value=2.1e-05  Score=68.27  Aligned_cols=168  Identities=14%  Similarity=0.071  Sum_probs=123.0

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------C-----
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------------P-----  129 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------p-----  129 (301)
                      .+.+...+..+.+.-++...++++.+|+++.++.+++.-  ......+|..+|+++++..              +     
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            445556788999999999999999999999999888752  2234567777777776511              0     


Q ss_pred             ----C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCH
Q 022205          130 ----L--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVP  200 (301)
Q Consensus       130 ----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~  200 (301)
                          .  ...+..+++.+..+.|+.++|++.++..++.+|.  +..+..+|..++...+.|.++...+.+.=.+ -|...
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA  330 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA  330 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence                0  1335678999999999999999999999998875  3568899999999999999999888875433 24555


Q ss_pred             HHHHHHHHHHHHc-CC------------CCcHHHHHHHHHHHhcccCCCchh
Q 022205          201 LYHLAYADVLYTL-GG------------VDNILLAKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       201 ~~~~~la~~~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~  239 (301)
                      ...+.-|-+-.+. ++            ...-..|++...+|++.||. -..
T Consensus       331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH-Vp~  381 (539)
T PF04184_consen  331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH-VPK  381 (539)
T ss_pred             HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC-Cch
Confidence            5555544433321 11            11134578999999999995 443

The molecular function of this protein is uncertain.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.46  E-value=2.6e-05  Score=71.77  Aligned_cols=173  Identities=13%  Similarity=0.048  Sum_probs=128.4

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  189 (301)
                      ..+++.+|+....+.++.+|+...+...-|.++.++|+.++|..+++..-...+++..+.-.+-.+|..++++++|..+|
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            44889999999999999999999999999999999999999998888887888888889999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccchHHH
Q 022205          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQ  269 (301)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  269 (301)
                      ++++..+|. ......+=.+|.+-++   |.+=.+.--+..+..|. +  ++|-+..+...+.........   ....+.
T Consensus       101 e~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk-~--~yyfWsV~Slilqs~~~~~~~---~~~i~l  170 (932)
T KOG2053|consen  101 ERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK-R--AYYFWSVISLILQSIFSENEL---LDPILL  170 (932)
T ss_pred             HHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc-c--cchHHHHHHHHHHhccCCccc---ccchhH
Confidence            999999999 7777777788888887   76554444444456664 3  344444444433321111111   114566


Q ss_pred             HHHHHHHHHHHHhhCC-hhhhHHH
Q 022205          270 SLAAAALEKDYKQRAP-AKLLLLT  292 (301)
Q Consensus       270 ~~~~~~l~~~~~~~~~-~~~~~~~  292 (301)
                      ..|.....+.....|+ +..+|+.
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~  194 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEII  194 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHH
Confidence            6777777777776643 3344433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.44  E-value=6.5e-07  Score=52.00  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      .++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345566666666666666666666666666666666666553

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.35  E-value=0.00018  Score=64.22  Aligned_cols=182  Identities=14%  Similarity=0.097  Sum_probs=148.6

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-CC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--  131 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--  131 (301)
                      +|.+...|....  -+..|+..+-+..+..+++. +|     .-...|...|..|...|+.+.|...|+++....-..  
T Consensus       345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            777777776643  35568888888888888764 45     334678899999999999999999999999865322  


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                        ..+|..-|.......+++.|.++++++...-..                  +...|..+++.....|-++.....|.+
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              568999999999999999999999998754211                  245788899999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                      .+.+.--.|..-.++|..+....-   +++|.+.|++.+.+.|-+++--.|...+
T Consensus       503 iidLriaTPqii~NyAmfLEeh~y---feesFk~YErgI~LFk~p~v~diW~tYL  554 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKY---FEESFKAYERGISLFKWPNVYDIWNTYL  554 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHH---HHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence            999998999999999999999999   9999999999999987545544444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.33  E-value=0.00037  Score=59.62  Aligned_cols=197  Identities=15%  Similarity=0.016  Sum_probs=131.9

Q ss_pred             hHHHHHhHHHhhhhcCCc---c-HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHh---C
Q 022205            5 TEETQLNRLENQVDNGGG---G-AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD---C   77 (301)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~---~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~   77 (301)
                      +...+|.+++.++.....   + ...++-.+  .+.++.+..+.++..+-.-+.  .. .+....+-++.|.++.+   .
T Consensus       121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSy--RdiqdydamI~Lve~l~~~p~--~~-~~~~~~i~~~yafALnRrn~~  195 (374)
T PF13281_consen  121 ELAKELRRIRQRLDDPELLSPDIVINLLLSY--RDIQDYDAMIKLVETLEALPT--CD-VANQHNIKFQYAFALNRRNKP  195 (374)
T ss_pred             HHHHHHHHHHHhhCCHhhcChhHHHHHHHHh--hhhhhHHHHHHHHHHhhccCc--cc-hhcchHHHHHHHHHHhhcccC
Confidence            344556666666554222   1 23333333  345677778877777554311  11 34566777888999999   8


Q ss_pred             CChHHHHHHHHH-HHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205           78 QCLDVAKDCIKV-LQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (301)
Q Consensus        78 ~~~~~A~~~~~~-~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  147 (301)
                      |+.+.|+.++.. +....+.+++.+.+.|.+|-..         ...++|+.+|.++...+|+ ...-.+++.++...|.
T Consensus       196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH  274 (374)
T ss_pred             CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence            999999999999 4455568899999999988543         3578999999999999965 4445677777777776


Q ss_pred             hhHHHHHHHHHH--------Hh----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          148 FPTAIEWLNKYL--------ET----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       148 ~~~A~~~~~~~l--------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ..+....+++..        +.    .-.+-+....++.+..-.|++++|+..+++++...|..+.....+.
T Consensus       275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~  346 (374)
T PF13281_consen  275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLE  346 (374)
T ss_pred             cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHH
Confidence            444433333222        11    1123344556788888899999999999999999887765444333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00011  Score=60.71  Aligned_cols=152  Identities=18%  Similarity=0.038  Sum_probs=123.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHH---HHHHHHHHHH
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHD---AWRELAEIYV  177 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~---~~~~lg~~~~  177 (301)
                      ...+.+....|++.+|...+.+.+...|.+..++..--.+++.+|+.......+++.+.. +|+-|-   +.-.++-.+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            344566777899999999999999999999999999999999999999999999999977 666543   3345667778


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHHHHHhh
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~~l~~~  254 (301)
                      ..|-|++|.+...++++++|.+..+....+.++...|+   ++++.++..+.-..-..   -....||-.++++.+-+..
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey  263 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY  263 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence            89999999999999999999999999999999999999   99999998775432111   1233456777777765554


Q ss_pred             hc
Q 022205          255 TK  256 (301)
Q Consensus       255 ~~  256 (301)
                      .+
T Consensus       264 e~  265 (491)
T KOG2610|consen  264 EK  265 (491)
T ss_pred             hH
Confidence            43

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=0.0012  Score=60.94  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=118.9

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHH----------HHhCC----------
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVL----------QKQFP----------   95 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------~~~~p----------   95 (301)
                      ...+.+++++++.-       +  .-..-..|++.|..+-..++.+.|+.+|+++          +..+|          
T Consensus       839 ~g~w~eA~eiAE~~-------D--RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~  909 (1416)
T KOG3617|consen  839 QGMWSEAFEIAETK-------D--RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK  909 (1416)
T ss_pred             cccHHHHHHHHhhc-------c--ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence            45566666665531       1  1134567888888888889999999998754          33444          


Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      .++..|.-.|.++...|+.+.|+.+|..+-.                     ....+..+.+.+|..|...|++.+|+.+
T Consensus       910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3455677789999999999999999988743                     2345667889999999999999999999


Q ss_pred             HHHHHH------hcCCC--------------HHHHHHHHHHHHHcc-cHHHHHHHHHHH------H--------------
Q 022205          155 LNKYLE------TFMAD--------------HDAWRELAEIYVSLQ-MYKQAAFCYEEL------I--------------  193 (301)
Q Consensus       155 ~~~~l~------~~p~~--------------~~~~~~lg~~~~~~~-~~~~A~~~~~~a------l--------------  193 (301)
                      |.++-.      +...+              +.-....+..|...| +++.|+..|-+|      +              
T Consensus       990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            887543      32211              111112233344443 444454444332      1              


Q ss_pred             ---hhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          194 ---LSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       194 ---~~~p-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                         .++| .+|....+-+..+....+   |++|+..+-.
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~~ 1105 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLCL 1105 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence               2244 457777777888877778   9988876543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=8.1e-07  Score=48.22  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=14.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A  185 (301)
                      |+++++++|+++.+|+++|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444444444444444444444444444444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=7.3e-06  Score=70.60  Aligned_cols=144  Identities=15%  Similarity=0.062  Sum_probs=118.2

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRVAI  141 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~l~~~  141 (301)
                      ...++...+...+..-.+.++....+++.+..+.+..+...|++.+|.+.+... +...|.        .-..|.++|.+
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            344566677788888888888887889999999999999999999999887654 333333        22367899999


Q ss_pred             HHHcCChhHHHHHHHHHHHh---------cC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLET---------FM---------ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~---------~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ++..|.+.-+..+|.++++.         .|         ......++.|..|...|+.-.|..||.++....-.+|..|
T Consensus       293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence            99999999999999999961         11         2356788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 022205          204 LAYADVLYTLG  214 (301)
Q Consensus       204 ~~la~~~~~~~  214 (301)
                      .++|+|.....
T Consensus       373 LRlAEcCima~  383 (696)
T KOG2471|consen  373 LRLAECCIMAL  383 (696)
T ss_pred             HHHHHHHHHHh
Confidence            99999987553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.29  E-value=1.8e-06  Score=74.17  Aligned_cols=109  Identities=20%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  147 (301)
                      -..+...+..+.|+.|+..+.++++++|+++..+-.++..+...+++..|+..+.++++.+|....+|...|.+....+.
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            34466667778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205          148 FPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      +.+|...|+......|+++.+...+-.|-
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            88888888888888888887776665553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.27  E-value=3.4e-05  Score=64.24  Aligned_cols=211  Identities=11%  Similarity=-0.040  Sum_probs=149.8

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLE  109 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~  109 (301)
                      ..+.+.++..|...+....  +  .-..+..+..+..+..+.|.+++++.+.-..++.+-      .-..++..++..+.
T Consensus        19 s~~~~~al~~w~~~L~~l~--~--~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   19 SNQTEKALQVWTKVLEKLS--D--LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             CchHHHHHHHHHHHHHHHH--H--HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666554311  0  113455666677788888999888776555444332      12346778888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVS  178 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~  178 (301)
                      ...++.+++.+....+..-...+     .+...+|..+..++.++++++.|+.+++.-.++      ..++..||..|..
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            88999999998888877543333     467778999999999999999999999875433      3478899999999


Q ss_pred             cccHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----CchhHhhh
Q 022205          179 LQMYKQAAFCYEELILSQP----TVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFG  243 (301)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p----~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~  243 (301)
                      ..++++|+-+..++.++..    ++.      .+++.++..+..+|.   .-.|.++.+++.++.-.     ...+...-
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gdra~~arc~~~  251 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGDRALQARCLLC  251 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            9999999999999987642    222      367888999999999   99999999998876322     23444445


Q ss_pred             HHHHHHHHHh
Q 022205          244 ICLCSSAIAQ  253 (301)
Q Consensus       244 l~~~~~~l~~  253 (301)
                      ++..|...++
T Consensus       252 ~aDIyR~~gd  261 (518)
T KOG1941|consen  252 FADIYRSRGD  261 (518)
T ss_pred             HHHHHHhccc
Confidence            5555555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=74.25  Aligned_cols=110  Identities=16%  Similarity=0.077  Sum_probs=96.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      .+.-.+..+.|+.|+..|.++++++|+++..+...+..+.+.+++..|+.-+.++++.+|....+|+..|.++...+.+.
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            35556667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +|...|+....+.|+++.+...+..|-...
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            999999999999999999888777764433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=2.6e-06  Score=46.34  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=0.00018  Score=58.59  Aligned_cols=154  Identities=14%  Similarity=0.042  Sum_probs=110.4

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChh
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFP  149 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~  149 (301)
                      +...+..|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+... ........+.+.....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            566788899999999999999999999999999999999999999998777654332222211 1111122333333333


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                      + +..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+-  .+..+...+-.++...|.   -+.+...|+
T Consensus       221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~~R  296 (304)
T COG3118         221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLAYR  296 (304)
T ss_pred             C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence            2 2346667778999999999999999999999999999888887653  446677777788887776   444444444


Q ss_pred             H
Q 022205          228 S  228 (301)
Q Consensus       228 ~  228 (301)
                      +
T Consensus       297 R  297 (304)
T COG3118         297 R  297 (304)
T ss_pred             H
Confidence            4

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=2e-06  Score=46.65  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      +|+++++++|+++.+|+++|.+|...|+   +++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence            4789999999999999999999999999   98886

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.19  E-value=5.4e-06  Score=45.01  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      .+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=4.9e-05  Score=60.01  Aligned_cols=67  Identities=10%  Similarity=0.014  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ...+.+++.|++..|+|-++++....++...|++..+++..|.++...=+   ..+|...|.++++++|.
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS  296 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence            44567788888888888888888888888888888888888888888777   88888888888888885

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=3.8e-05  Score=60.60  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLE--------DNPLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      .++...|+-++..|+|.+|...|+.++.        ..|.++          ..+.++++|+...|++-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            4566778888899999999999988874        234433          3677888999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      .+|.+..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999888888899999999999998876543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00081  Score=53.32  Aligned_cols=167  Identities=17%  Similarity=0.197  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----PLD  131 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~  131 (301)
                      ....|..-+.++-..++|++|..++.++.+-...+      ..++-..+.+......+.++..+|+++....     |+.
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            45678887888888899999999999999654432      2344556677777889999999999998743     444


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh----C--CCC
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILS----Q--PTV  199 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~  199 (301)
                      ...-...+--....-++++|+++|++++.....+      .+.+...+.++.+...|.+|-..+.+-...    +  |+.
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            3333344444556778999999999998875444      345567788899999999998888765422    2  232


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ...+.....+|....+   |..|...|+.+.+.
T Consensus       190 ~k~~va~ilv~L~~~D---yv~aekc~r~~~qi  219 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHD---YVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHHHHhhHHH---HHHHHHHhcchhcC
Confidence            3344444455666668   99999999987765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.13  E-value=6e-05  Score=67.45  Aligned_cols=118  Identities=18%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAI  152 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~  152 (301)
                      ..+.+.|..++....+.+|+..-..+..|+++...|+.++|++.|++++.....-    ...++.++.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            3456677788888888888877777788888888888888888888777432221    225667777777788888888


Q ss_pred             HHHHHHHHhcCCCHHH-HHHHHHHHHHcccH-------HHHHHHHHHHHh
Q 022205          153 EWLNKYLETFMADHDA-WRELAEIYVSLQMY-------KQAAFCYEELIL  194 (301)
Q Consensus       153 ~~~~~~l~~~p~~~~~-~~~lg~~~~~~~~~-------~~A~~~~~~al~  194 (301)
                      .+|.+..+.+.-+... .+..|.++...|+.       ++|...|.++-.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            8887777766554333 34456666677777       666666666543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.13  E-value=0.00024  Score=63.61  Aligned_cols=154  Identities=19%  Similarity=0.116  Sum_probs=102.7

Q ss_pred             CCChHHHHHHHHHHHHhCC-Cchhh-HHHHHH-------HHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205           77 CQCLDVAKDCIKVLQKQFP-ESKRV-GRLEGI-------LLE--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p-~~~~~-~~~~a~-------~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  145 (301)
                      .||-+.++..+..+.+... ..+-+ +.+++.       +-.  .....+.|...+.......|+.....+..|.++...
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4777888888887766221 11111 111111       011  234567788888888888888888888888888888


Q ss_pred             CChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcH-
Q 022205          146 GNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNI-  219 (301)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~-  219 (301)
                      |+.++|+..|++++.....    ..-.++.+|.++..+++|++|..+|.+.++.+.-. ..+.+..|.|+...|+   . 
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~  357 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE  357 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence            8888888888887742221    13356778888888888888888888888765432 3455666788888887   5 


Q ss_pred             ------HHHHHHHHHHhccc
Q 022205          220 ------LLAKKYYASTIDLT  233 (301)
Q Consensus       220 ------~~A~~~~~~al~~~  233 (301)
                            ++|...|.++-.+.
T Consensus       358 ~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHHH
Confidence                  67777776665543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.09  E-value=3e-05  Score=66.95  Aligned_cols=145  Identities=14%  Similarity=0.121  Sum_probs=115.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HHhcCC--------CHHHHHHHHHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWRELAEI  175 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~lg~~  175 (301)
                      ...+..+.+..-+..-.+.+.....+.+.+....++.++..|++.+|.+.+... +...|.        ..-+|+++|-+
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            334555566666666666666667788888899999999999999999987653 333333        23468899999


Q ss_pred             HHHcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc
Q 022205          176 YVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  237 (301)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (301)
                      +++.|.|.-+..+|.+|+. .        .|         ....+.++.|..|...|+   .-.|..+|.+++..... +
T Consensus       293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh~-n  368 (696)
T KOG2471|consen  293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFHR-N  368 (696)
T ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHhc-C
Confidence            9999999999999999995 1        11         224588999999999999   99999999999999885 9


Q ss_pred             hhHhhhHHHHHHHHHh
Q 022205          238 TKALFGICLCSSAIAQ  253 (301)
Q Consensus       238 ~~~~~~l~~~~~~l~~  253 (301)
                      ++.|..++.|+.--.+
T Consensus       369 PrlWLRlAEcCima~~  384 (696)
T KOG2471|consen  369 PRLWLRLAECCIMALQ  384 (696)
T ss_pred             cHHHHHHHHHHHHHhh
Confidence            9999999999876443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=8.3e-05  Score=61.27  Aligned_cols=97  Identities=16%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      +..-|+-|+...+|..|+..|.+.+...-.+    ...|.+.+.+.+..|+|..|+.-+.+++.++|++..++++-|.|+
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            3344555666666666666666666554333    334566666666677777777777777777777777777777777


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccC
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      +.+.+   +.+|+...+..+..+.
T Consensus       164 ~eLe~---~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  164 LELER---FAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHH---HHHHHHHHhhhhhhhH
Confidence            77777   7777777666666554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.02  E-value=0.0022  Score=54.38  Aligned_cols=167  Identities=14%  Similarity=0.020  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGIL--LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      +-+...-++..+-.|+++.|.+-|+.++. +|+.- ..-+.|.+  ..+.|..+.|..+-+.+....|.-+.++...-..
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            33444457788889999999999988875 45322 22233333  3467999999999999999999999988888888


Q ss_pred             HHHcCChhHHHHHHHHHHHhc---CCCH---HHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          142 AKAQGNFPTAIEWLNKYLETF---MADH---DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~---p~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      .+..|+|+.|+++........   ++-.   .+-..-+..... .-+...|...-..++++.|+....-..-+..++..|
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~  277 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG  277 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence            899999999999988755432   2211   111111221111 234667777778888888888777777778888888


Q ss_pred             CCCcHHHHHHHHHHHhcccCC
Q 022205          215 GVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +   ..++-..++.+.+..|.
T Consensus       278 ~---~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         278 N---LRKGSKILETAWKAEPH  295 (531)
T ss_pred             c---hhhhhhHHHHHHhcCCC
Confidence            8   88888888888888774

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.00  E-value=0.0012  Score=58.04  Aligned_cols=173  Identities=16%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHH
Q 022205           80 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      -+++..++++++.... .+...++.++..-...-+   ++.....+++++.....++. +|..+...-.+..-.+.|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            4677778888776443 344445555554443333   66777788888775443333 556666666667778888999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-
Q 022205          155 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL-  232 (301)
Q Consensus       155 ~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-  232 (301)
                      |.++.+.-.....++..-|.+ |.-.++..-|..+|+-.++..++.+..-..+...+..+|+   -..|...|++++.. 
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTSV  465 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhcc
Confidence            999887644333455444444 4557899999999999999999999998888899999999   88999999999987 


Q ss_pred             -cCCCchhHhhhHHHHHHHHHhhh
Q 022205          233 -TGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       233 -~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                       .|+...+.|-.+..--++.|++.
T Consensus       466 l~~~ks~~Iw~r~l~yES~vGdL~  489 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLEYESNVGDLN  489 (656)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHH
Confidence             55545566655555455555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.93  E-value=3.3e-05  Score=41.82  Aligned_cols=33  Identities=24%  Similarity=0.141  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (301)
                      .+++.+|.++...|++++|+..|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345566666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.90  E-value=0.00067  Score=50.70  Aligned_cols=112  Identities=17%  Similarity=0.018  Sum_probs=70.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA-IEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      |......++...++..+++++.........-..       ...|-.. ...++..      ...+...++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence            444556677788888888887754322110000       0111111 1112111      2345667888888899999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      .|+..+++++..+|.+..++..+-.++...|+   ...|+..|+++.+.
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999   99998888887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.00095  Score=52.56  Aligned_cols=171  Identities=13%  Similarity=0.064  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh------hHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC---
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD---  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---  131 (301)
                      +..+.|.. +.-+++.++..+|..+++++++++.+-.+      .+.-+|.+|... .++++|+.+|+.+-+.....   
T Consensus        72 Daat~Yve-A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   72 DAATTYVE-AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             hHHHHHHH-HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            34556666 44456677999999999999998764433      344788888876 89999999999997743322   


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                         -..+...+..-...++|.+|+..|+++....-+++       ..++.-|.|++-..+.-.+...+++...++|....
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence               22455566677788999999999999988766664       24556677888778888888889999999997654


Q ss_pred             H--HHHHHHHHHH--cCCCCcHHHHHHHHHHHhccc
Q 022205          202 Y--HLAYADVLYT--LGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       202 ~--~~~la~~~~~--~~~~~~~~~A~~~~~~al~~~  233 (301)
                      .  ...+..+...  .++.+.+.+++..|...-+++
T Consensus       231 sREckflk~L~~aieE~d~e~fte~vkefDsisrLD  266 (288)
T KOG1586|consen  231 SRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLD  266 (288)
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHH
Confidence            2  2223332222  223233566666665554444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=3.4e-05  Score=41.83  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +.+|+++|.++..+|+   +++|+.+|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGD---YEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCcC
Confidence            3578999999999999   99999999999999995

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.88  E-value=0.00091  Score=49.96  Aligned_cols=116  Identities=14%  Similarity=0.045  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      +...+......++...++..+.+++....+..-.-...      ..-.......++..      ...+...++..+...|
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~   76 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAG   76 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence            33446666778999999999999999875332111000      01111122222222      2345677888888999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      ++++|+..+.+++..+|.+-.+|..+-.++...|+...|+..|++...
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=9.7e-05  Score=60.87  Aligned_cols=97  Identities=21%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  175 (301)
                      .+.--|+-|+..++|..|+..|.+.|...-.+    ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.=+.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34455777777788888888888887754333    33677777788888888888888888888888888888888888


Q ss_pred             HHHcccHHHHHHHHHHHHhhC
Q 022205          176 YVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~~~  196 (301)
                      ++.+.++..|+..++..+.++
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhh
Confidence            888888888877777776554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0094  Score=47.94  Aligned_cols=184  Identities=11%  Similarity=0.144  Sum_probs=142.0

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHhCCCchhhH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDC-QCLDVAKDCIKVLQKQFPESKRVG  101 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~  101 (301)
                      .++++++.+...+. .+..++.+....+.-       +|.+.++|...-.+.-.. .+..+-+.++..++..+|++-.+|
T Consensus        44 ~~m~YfRAI~~~~E-~S~RAl~LT~d~i~l-------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW  115 (318)
T KOG0530|consen   44 DVMDYFRAIIAKNE-KSPRALQLTEDAIRL-------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW  115 (318)
T ss_pred             HHHHHHHHHHhccc-cCHHHHHHHHHHHHh-------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence            45667776655544 445566666666654       777777776554443333 467788999999999999999999


Q ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c
Q 022205          102 RLEGILLEAKGLWA-EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-L  179 (301)
Q Consensus       102 ~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~  179 (301)
                      ..+-.+....|++. .-+++.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...--+... .
T Consensus       116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~  195 (318)
T KOG0530|consen  116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK  195 (318)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence            99999999999888 888999999999999999999999999999999999999999999988777777643222111 1


Q ss_pred             -----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC
Q 022205          180 -----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG  214 (301)
Q Consensus       180 -----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~  214 (301)
                           -..+.-+.+..+.+.+.|++..+|..|.-++.. .|
T Consensus       196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g  236 (318)
T KOG0530|consen  196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG  236 (318)
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence                 234556778888899999999999999887775 44

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.81  E-value=0.013  Score=50.63  Aligned_cols=150  Identities=18%  Similarity=0.122  Sum_probs=104.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-C-C---
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-P-T---  198 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~---  198 (301)
                      .......|..++.+....|+++.|...+.++...++    ..+.+.+..+.++...|+..+|+..++..+... . .   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            445566788889999999999999999988887652    246777788888999999999999888877611 1 0   


Q ss_pred             ----------------------C-------HHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205          199 ----------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (301)
Q Consensus       199 ----------------------~-------~~~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  243 (301)
                                            .       ..++..+|......      +.   .+++...|.++++++|. ..++|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~  297 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHS  297 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHH
Confidence                                  1       12455555555555      55   99999999999999996 8889999


Q ss_pred             HHHHHHHHHhhhccCCccc--ccchHHHHHHHHHHHHHHH
Q 022205          244 ICLCSSAIAQLTKGRNKED--KESPELQSLAAAALEKDYK  281 (301)
Q Consensus       244 l~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~  281 (301)
                      ++..+..+-..........  ....+....+...+.+...
T Consensus       298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~  337 (352)
T PF02259_consen  298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALS  337 (352)
T ss_pred             HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHh
Confidence            9998888876444322211  1334444444444444433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.80  E-value=0.0037  Score=53.29  Aligned_cols=145  Identities=12%  Similarity=0.018  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           86 CIKVLQKQFPESKRVGRLEGILLEAKG------------LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      -+++.++.+|.+..+|..+.......-            -.+.-+.+|++|++.+|++...+..+-.+.....+.++...
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            356666677777777766655433321            13556777888888888888777777777777777777777


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHHH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLYT  212 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~~  212 (301)
                      -+++++..+|+++..|...-.....   .-.+......|.+++..-.    .              -..+..+++.....
T Consensus        87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~  166 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ  166 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777654443332   2245666666666663210    0              01245556666777


Q ss_pred             cCCCCcHHHHHHHHHHHhccc
Q 022205          213 LGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~  233 (301)
                      .|-   .+.|+..++-.++++
T Consensus       167 aG~---~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  167 AGY---TERAVALWQALLEFN  184 (321)
T ss_pred             CCc---hHHHHHHHHHHHHHH
Confidence            777   888888888877763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.79  E-value=0.0023  Score=56.00  Aligned_cols=136  Identities=18%  Similarity=0.018  Sum_probs=101.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------  164 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------  164 (301)
                      .-..+..+...-++.-++|++.+|+.+.+|.-++.-  ......++..+++++++....                     
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R  253 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR  253 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence            344566889999999999999999999988777652  233456777777777654210                     


Q ss_pred             C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc-CCCc
Q 022205          165 D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT-GGKN  237 (301)
Q Consensus       165 ~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~  237 (301)
                      +    +.+...+|+|..+.|+.++|++.|+..++..|.  +..++.++..++..++.   +.++...+.+--+.. |. .
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~---Yad~q~lL~kYdDi~lpk-S  329 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA---YADVQALLAKYDDISLPK-S  329 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC---HHHHHHHHHHhccccCCc-h
Confidence            0    224457999999999999999999999988775  46789999999999999   999999988854332 32 4


Q ss_pred             hhHhhhHHHH
Q 022205          238 TKALFGICLC  247 (301)
Q Consensus       238 ~~~~~~l~~~  247 (301)
                      ....|.-++.
T Consensus       330 Ati~YTaALL  339 (539)
T PF04184_consen  330 ATICYTAALL  339 (539)
T ss_pred             HHHHHHHHHH
Confidence            4444554543

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.0032  Score=48.31  Aligned_cols=95  Identities=14%  Similarity=0.065  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      ..++..+...|++++|+..++.++....+.   +-+-..||.+....|.+++|+..+...-.. .-.+......|+++..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence            344555556666666666666655432221   223445666666666666666555432210 0012223445666666


Q ss_pred             cCCCCcHHHHHHHHHHHhcccC
Q 022205          213 LGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      .|+   -++|+..|.+++...+
T Consensus       172 kg~---k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         172 KGD---KQEARAAYEKALESDA  190 (207)
T ss_pred             cCc---hHHHHHHHHHHHHccC
Confidence            666   6666666666666544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.76  E-value=0.0013  Score=60.78  Aligned_cols=164  Identities=16%  Similarity=0.141  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHH--------HH---hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVL--------QK---QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---  129 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~--------~~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---  129 (301)
                      -.+|.++|..+....+.+-|.-++-.+        ++   .+|+  ..-...|.+....|..++|...|++.-+.+-   
T Consensus       757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNK  834 (1416)
T KOG3617|consen  757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNK  834 (1416)
T ss_pred             hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            346777777777777777666554221        11   1222  1222334444555666666666655533110   


Q ss_pred             ---------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHH----------HHhcC----------CCHHH
Q 022205          130 ---------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKY----------LETFM----------ADHDA  168 (301)
Q Consensus       130 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~p----------~~~~~  168 (301)
                                           .-...|++.+.-+...++.+.|+++|+++          +.-+|          .++..
T Consensus       835 lyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L  914 (1416)
T KOG3617|consen  835 LYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL  914 (1416)
T ss_pred             HHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence                                 01236778888888889999999999883          22233          23556


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhh---------------------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILS---------------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                      |.-.|......|+.+.|+.+|..|-..                     ...+-.+.+.+|..|...|+   +.+|+.+|.
T Consensus       915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~Av~FfT  991 (1416)
T KOG3617|consen  915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD---VVKAVKFFT  991 (1416)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH---HHHHHHHHH
Confidence            667888888999999999999887522                     23455688899999999999   999999998


Q ss_pred             HHhcc
Q 022205          228 STIDL  232 (301)
Q Consensus       228 ~al~~  232 (301)
                      +|-..
T Consensus       992 rAqaf  996 (1416)
T KOG3617|consen  992 RAQAF  996 (1416)
T ss_pred             HHHHH
Confidence            86443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.74  E-value=0.013  Score=50.52  Aligned_cols=189  Identities=16%  Similarity=0.017  Sum_probs=120.2

Q ss_pred             ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCC
Q 022205           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGL  113 (301)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~  113 (301)
                      .++.++..-..++...    ....+....+...+..+...|.++.|...+.++....+    ..+.+.+..+.++...|+
T Consensus       124 ~~~~il~~R~~~l~~~----~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~  199 (352)
T PF02259_consen  124 VWEPILSLRRLVLSLI----LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE  199 (352)
T ss_pred             HHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence            4455555544455421    22335667788889999999999999999998887653    256777888999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------ccH
Q 022205          114 WAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL------QMY  182 (301)
Q Consensus       114 ~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~------~~~  182 (301)
                      ..+|+..++..+.......   .....+......  ............     ......++..+|......      +..
T Consensus       200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~  274 (352)
T PF02259_consen  200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESS  274 (352)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccH
Confidence            9999999988887222211   000001000000  000000000000     011145667777777776      788


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC--------------CcHHHHHHHHHHHhcccCC
Q 022205          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV--------------DNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------~~~~~A~~~~~~al~~~p~  235 (301)
                      ++++..|..++..+|....+|..+|..+...-+.              +-...|+..|-+++...|.
T Consensus       275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            8899999999999998888888888777654220              1135699999999999885

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.74  E-value=1.2e-05  Score=66.31  Aligned_cols=92  Identities=15%  Similarity=0.035  Sum_probs=59.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~  184 (301)
                      +.-.+..|.++.|++.|..++..+|.....+...+.++..++++..|+.-+..+++++|+...-+-..|.+...+|+|++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            33444556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhhC
Q 022205          185 AAFCYEELILSQ  196 (301)
Q Consensus       185 A~~~~~~al~~~  196 (301)
                      |...+..+++++
T Consensus       201 aa~dl~~a~kld  212 (377)
T KOG1308|consen  201 AAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHhcc
Confidence            666666666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.74  E-value=6.7e-05  Score=40.60  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      +|+.+|.+|...|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344455555555555555555555554444

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.72  E-value=3.9e-05  Score=63.39  Aligned_cols=93  Identities=15%  Similarity=-0.034  Sum_probs=61.5

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  150 (301)
                      +...+..|.++.|+..+..++.++|.....+..++.++...++...|+..|..++.++|+....+...|.....+|+|.+
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            44455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcC
Q 022205          151 AIEWLNKYLETFM  163 (301)
Q Consensus       151 A~~~~~~~l~~~p  163 (301)
                      |...+..+++++-
T Consensus       201 aa~dl~~a~kld~  213 (377)
T KOG1308|consen  201 AAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHhccc
Confidence            6666666666553

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.0057  Score=47.01  Aligned_cols=128  Identities=12%  Similarity=0.010  Sum_probs=95.5

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKA  144 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~  144 (301)
                      +......+.. +......+....+|.+..   +...++..+...+++++|+..++.++....+.   ..+-.+++.+...
T Consensus        60 ~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q  138 (207)
T COG2976          60 AIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ  138 (207)
T ss_pred             HHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence            3333444544 666667777777765543   34567888899999999999999998744433   2367789999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      .|.+++|+..+......+- .+......|+++...|+-++|+..|++++...++.+
T Consensus       139 ~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         139 QKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            9999999999887543221 133455689999999999999999999999875543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.70  E-value=0.0052  Score=53.10  Aligned_cols=157  Identities=15%  Similarity=0.035  Sum_probs=115.5

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh---------c-----C------------
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---------D-----N------------  128 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~-----~------------  128 (301)
                      ...+|.+.-+    ..++.+|-+..++..++.++..+|+...|-+.+++++=         .     +            
T Consensus        21 v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~   96 (360)
T PF04910_consen   21 VQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR   96 (360)
T ss_pred             HHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence            4445555433    34578899999999999999999999999999888862         1     1            


Q ss_pred             CCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCC-----C
Q 022205          129 PLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQP-----T  198 (301)
Q Consensus       129 p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p-----~  198 (301)
                      +.|..   +.+.......+.|-+..|.++++-.+.++|. ||-.... +-....+.++|+--+..++.......     .
T Consensus        97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~  176 (360)
T PF04910_consen   97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL  176 (360)
T ss_pred             ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence            12222   5666777888999999999999999999998 7755444 44445567888877877776554211     1


Q ss_pred             CHHHHHHHHHHHHHcCCC------------CcHHHHHHHHHHHhcccCC
Q 022205          199 VPLYHLAYADVLYTLGGV------------DNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~------------~~~~~A~~~~~~al~~~p~  235 (301)
                      -|...+..+-+++..++.            ++.+.|...+.+|+...|.
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            345667788888888881            1128999999999999995

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.013  Score=51.13  Aligned_cols=168  Identities=11%  Similarity=0.034  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhC---CC-------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH-
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF---PE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP-  132 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~-  132 (301)
                      ..++.++.+-+-.|++.+|+..+..+.+..   |.       .+.+++++|......+.++.|...|..+.+.... +. 
T Consensus       324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~  403 (629)
T KOG2300|consen  324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ  403 (629)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence            344566777788899999998888777643   53       4567788999999999999999999999885432 22 


Q ss_pred             -HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205          133 -VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----  199 (301)
Q Consensus       133 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----  199 (301)
                       .+..+++..|.+.|+-+.--+.++..-..+.+.       ..+++..|...+.++++.+|.....+.++.....     
T Consensus       404 a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL  483 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRL  483 (629)
T ss_pred             HHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHH
Confidence             255678999999887665555554432222111       3466777888889999999999999999875211     


Q ss_pred             -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                       .-.+..+|.+....|+   ..++....+-++.+...
T Consensus       484 ~a~~LvLLs~v~lslgn---~~es~nmvrpamqlAkK  517 (629)
T KOG2300|consen  484 TACSLVLLSHVFLSLGN---TVESRNMVRPAMQLAKK  517 (629)
T ss_pred             HHHHHHHHHHHHHHhcc---hHHHHhccchHHHHHhc
Confidence             2256678999999999   99999888888876443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.011  Score=47.01  Aligned_cols=186  Identities=10%  Similarity=-0.012  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhc-----CCCHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETF-----MADHDA  168 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~  168 (301)
                      .+..-+.++...++|++|...+.++.+-..++.      .++-..+.+......+.++..+++++....     |+....
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            344456677778999999999999986433332      256667788888899999999999998874     333333


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----Cc
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KN  237 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~  237 (301)
                      -...+-=.....+.++|+..|++++.+-..+      .+.+...+.++.+...   +.+|-..+.+-......     .-
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k---f~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK---FTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH---hhHHHHHHHHhhhHHHHHhhcccH
Confidence            3444444567788999999999998764333      2345566778888888   99998888775433211     24


Q ss_pred             hhHhhhHHHHHHHHHhhhccCCcccc------cchHHHHHHHHHHHHHHHhhCChhh
Q 022205          238 TKALFGICLCSSAIAQLTKGRNKEDK------ESPELQSLAAAALEKDYKQRAPAKL  288 (301)
Q Consensus       238 ~~~~~~l~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~  288 (301)
                      .+.+.+..+++....+...+..-..+      ....-...+.++|.+.|.+..++.+
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~  246 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI  246 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence            45566766766665554332221111      1222233456678888887766543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0058  Score=50.07  Aligned_cols=132  Identities=17%  Similarity=0.042  Sum_probs=99.0

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HH--H
Q 022205           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LA--E  174 (301)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg--~  174 (301)
                      ...-+..+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...=......  .+.. .+  .
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~i~  211 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQIE  211 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHHHH
Confidence            33445566777888999999999999999999999999999999999999999988887632211111  1111 11  2


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .+.+.....+. ..++..+..+|++..+-+.+|..+...|+   .+.|.+++-..++.+-+
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            22222222221 33566678899999999999999999999   99999999999988765

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.66  E-value=0.00022  Score=63.07  Aligned_cols=102  Identities=16%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      |.+....|+...|+.++..++...|.... ...+++++..+.|-...|-.++.+++.++...|-.++.+|.++....+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            34444567777788888777777775443 45667777777777777777777777777777777777788888888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHH
Q 022205          184 QAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      .|++.|+.|++.+|+++.....+
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHH
Confidence            88888888888777777654444

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.63  E-value=0.016  Score=48.75  Aligned_cols=162  Identities=13%  Similarity=-0.020  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhC----CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHH
Q 022205           66 LYEQVSIAAMDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHK  136 (301)
Q Consensus        66 ~~~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~  136 (301)
                      ....++..+...    .+...|..++..+..  ...+.+.+.+|.++..    ..+..+|..+|+++....... ..+..
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~  152 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY  152 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            344444444432    457778888874443  5667777788888876    348888888888888876444 34467


Q ss_pred             HHHHHHHHcC-------ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205          137 RRVAIAKAQG-------NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLA  205 (301)
Q Consensus       137 ~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~  205 (301)
                      .+|.++..-.       +...|...|.++-...  ++.+.+.+|.+|..    ..++.+|+..|.++-+...  ...++.
T Consensus       153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~  228 (292)
T COG0790         153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN  228 (292)
T ss_pred             HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence            7777776642       2236788888777665  67888888877755    2478888888888887765  777788


Q ss_pred             HHHHHHHcCCC------------CcHHHHHHHHHHHhcccC
Q 022205          206 YADVLYTLGGV------------DNILLAKKYYASTIDLTG  234 (301)
Q Consensus       206 la~~~~~~~~~------------~~~~~A~~~~~~al~~~p  234 (301)
                      ++ +++..|..            .+...|...+..+....+
T Consensus       229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence            88 66666520            126677777777666654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.63  E-value=0.032  Score=47.56  Aligned_cols=126  Identities=12%  Similarity=-0.041  Sum_probs=69.0

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHH----HHHHHHHHHHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLDPV----LHKRRVAIAKA  144 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~----~~~~l~~~~~~  144 (301)
                      ......|+.+.|+.+.+.+....|.-+.++...-......|+|+.|++..+.....   .++...    ++..---....
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            33445677777777777777777777766666656666677777777776554431   121111    01000001111


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      ..+...|...-.++.++.|+...+-..-+..++..|+..++-.+++.+.+..|
T Consensus       242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP  294 (531)
T COG3898         242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP  294 (531)
T ss_pred             cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence            23344555555555555555555555555555555555555555555555555

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.56  E-value=0.00072  Score=58.68  Aligned_cols=130  Identities=11%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      .+..|+.-.|-.-+..++...|.+|....+.+.+....|.|+.|...+..+-..-.....+...+.......|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            46679999999999999999999999999999999999999999988876655444444455666677788999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ...-.+...-.+++....-+..-...|-+++|..++++.+.++|.....|
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence            99988887777888776666666778899999999999999988654433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.50  E-value=0.042  Score=46.19  Aligned_cols=162  Identities=13%  Similarity=-0.011  Sum_probs=121.4

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cC
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QG  146 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g  146 (301)
                      ...+++..+...+..+..  -.++.....++.++...    .+..+|..+|+.+  ....++.+.+.+|.++..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence            455778888888877776  23346677777777664    4688899999954  445577788899999987    45


Q ss_pred             ChhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCC
Q 022205          147 NFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVD  217 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~  217 (301)
                      +..+|..+|+++.+..-.. ..+.+.+|.+|..-.       +...|+..|.++-...  ++.+...+|.+|..- |-..
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence            8999999999999875333 234788888887642       2347999999988765  788899999887654 4344


Q ss_pred             cHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205          218 NILLAKKYYASTIDLTGGKNTKALFGIC  245 (301)
Q Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~  245 (301)
                      ++++|..+|.++.+...   ..+++.++
T Consensus       206 d~~~A~~wy~~Aa~~g~---~~a~~~~~  230 (292)
T COG0790         206 DLKKAFRWYKKAAEQGD---GAACYNLG  230 (292)
T ss_pred             CHHHHHHHHHHHHHCCC---HHHHHHHH
Confidence            69999999999998853   66677776

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.021  Score=45.97  Aligned_cols=175  Identities=14%  Similarity=0.070  Sum_probs=140.9

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh-HH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TA  151 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A  151 (301)
                      ......-+.|+.+...++..+|.+-.+|..+-.++..+ .+..+-++++...+..+|.+-.+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            44556678899999999999999888888777777665 46788899999999999999999999999999999888 88


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCC--CCcHHHHHHHHHH
Q 022205          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGG--VDNILLAKKYYAS  228 (301)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~--~~~~~~A~~~~~~  228 (301)
                      +.+.+.++..+..+-.+|...-.+...-+.|+.-+.+....++.+-.+-.+|...-.+... .|-  ....+.-+.+..+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999887777766554222111 121  0125666788888


Q ss_pred             HhcccCCCchhHhhhHHHHHH
Q 022205          229 TIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       229 al~~~p~~~~~~~~~l~~~~~  249 (301)
                      .+.+.|+ |..+|-.|.-.+.
T Consensus       213 ~I~~vP~-NeSaWnYL~G~l~  232 (318)
T KOG0530|consen  213 KILLVPN-NESAWNYLKGLLE  232 (318)
T ss_pred             HHHhCCC-CccHHHHHHHHHH
Confidence            9999996 8888876664444

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.0025  Score=55.68  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHH
Q 022205           82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLE  160 (301)
Q Consensus        82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~  160 (301)
                      .-..+++.+...++.++..|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345678888899999999998888888887889999999999999999999999988888777766 8889999999999


Q ss_pred             hcCCCHHHHHHH
Q 022205          161 TFMADHDAWREL  172 (301)
Q Consensus       161 ~~p~~~~~~~~l  172 (301)
                      .+|++|..|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999887643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.47  E-value=0.0044  Score=46.28  Aligned_cols=86  Identities=21%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+..+....+..++.+.+..++..+.-..|..+.+...-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            44556666677777788888888888888888888888888888888888888888888888888888887777777777


Q ss_pred             HHcCCh
Q 022205          143 KAQGNF  148 (301)
Q Consensus       143 ~~~g~~  148 (301)
                      ...|+.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            777764

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0021  Score=56.15  Aligned_cols=91  Identities=14%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL  194 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~  194 (301)
                      .-...|+.++...+.++..|........+.+.+.+-..+|.+++..+|++|+.|..-|.-.+..+. ++.|...|.+++.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            445678889999999999999998888888889999999999999999999999999988888765 9999999999999


Q ss_pred             hCCCCHHHHHHH
Q 022205          195 SQPTVPLYHLAY  206 (301)
Q Consensus       195 ~~p~~~~~~~~l  206 (301)
                      .+|+++..|..+
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999877654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.45  E-value=0.012  Score=44.02  Aligned_cols=81  Identities=17%  Similarity=0.026  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      +..+..+-...++.+++...+....-+.|+.+..-..-|.++...|+|.+|+..++.+....|..+.+.-.++.|++.+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            33444444555666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             C
Q 022205          215 G  215 (301)
Q Consensus       215 ~  215 (301)
                      +
T Consensus        93 D   93 (160)
T PF09613_consen   93 D   93 (160)
T ss_pred             C
Confidence            6

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.42  E-value=0.00043  Score=37.31  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (301)
                      +|+.+|.++...|++++|+..|+++++.+|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455556666666666666666666666555

...

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.41  E-value=0.0027  Score=42.96  Aligned_cols=65  Identities=23%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG  215 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~  215 (301)
                      .+..+++.+..+|+++.+.+.+|..+...|++++|+..+-.++..+++.  ..+...+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556677777777777777777777777777777777777777776654  4555556666666665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.38  E-value=0.00035  Score=38.35  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      |.+||.+|...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.33  E-value=0.00062  Score=36.31  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444455555555555555555555544443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.33  E-value=0.051  Score=47.06  Aligned_cols=128  Identities=16%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------------C------------CCH---HHHHHHHH
Q 022205          124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------------M------------ADH---DAWRELAE  174 (301)
Q Consensus       124 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------------p------------~~~---~~~~~lg~  174 (301)
                      .+..+|.+.+++..++.++..+|+...|..++++++-..              +            .|-   .+.+....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            356899999999999999999999999999988876321              1            111   23445567


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC----chhHhhhHHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPT-VPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK----NTKALFGICLCS  248 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~l~~~~  248 (301)
                      .+.+.|.+.-|.++++-.+.++|. ||.. ...+-....+.++   ++--+..++.........    -...-|+.++++
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~---y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~  188 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ---YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY  188 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC---HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence            778899999999999999999998 7654 3444444456666   777777777655421110    124667888888


Q ss_pred             HHHHhh
Q 022205          249 SAIAQL  254 (301)
Q Consensus       249 ~~l~~~  254 (301)
                      ..+++.
T Consensus       189 ~~l~~~  194 (360)
T PF04910_consen  189 FRLEKE  194 (360)
T ss_pred             HHhcCc
Confidence            888874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.33  E-value=0.029  Score=51.65  Aligned_cols=147  Identities=18%  Similarity=0.033  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcC-
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLE-------DNPLDPVLHKRRVAIAKAQG-  146 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g-  146 (301)
                      ...|..+++.+.+.  .+..+...+|.++..-     .+.+.|+.+|+.+..       ..  .+.+.+.+|.+|.... 
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCC
Confidence            45677778777763  4566666777777654     588999999998877       33  4557788999998854 


Q ss_pred             ----ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCc
Q 022205          147 ----NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN  218 (301)
Q Consensus       147 ----~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~  218 (301)
                          +...|..++.++-...  ++.+.+.+|.++....   ++..|.++|..|...  .+..+.+++|.+|..- |-.-+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence                5677999999888765  5777888899988755   678999999998764  5678888888887644 22345


Q ss_pred             HHHHHHHHHHHhcccC
Q 022205          219 ILLAKKYYASTIDLTG  234 (301)
Q Consensus       219 ~~~A~~~~~~al~~~p  234 (301)
                      ...|..+|.++.+..+
T Consensus       380 ~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHHHHHccC
Confidence            8999999999998863

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.32  E-value=0.0045  Score=43.00  Aligned_cols=45  Identities=20%  Similarity=0.150  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      +++.|.++..+.|..+..++.+|.-+-....|++++.-.+++|.+
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            456677777777777666666666666566666666666666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.31  E-value=0.099  Score=45.58  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSS  249 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~  249 (301)
                      |..++..|+|.++..+-.-..++.| .+.++..+|.+++...+   |++|-.++..   +-|+   .+....-.+++|+-
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK  541 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQK---LPPNERMRDSKVQKALALCQK  541 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence            4456788999999999999999999 89999999999999999   9999999874   3333   45566678888887


Q ss_pred             HHHh
Q 022205          250 AIAQ  253 (301)
Q Consensus       250 ~l~~  253 (301)
                      .+.+
T Consensus       542 h~~k  545 (549)
T PF07079_consen  542 HLPK  545 (549)
T ss_pred             hhhh
Confidence            7654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.28  E-value=0.044  Score=46.74  Aligned_cols=118  Identities=14%  Similarity=0.053  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHH
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLN  156 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~  156 (301)
                      .+.-+.++++|++.+|++...+..+-.+.....+.++....+++++..+|++...|..+-.....   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            35677889999999999999988888888888899999999999999999999988766554433   234667777887


Q ss_pred             HHHHhcCCC------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          157 KYLETFMAD------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       157 ~~l~~~p~~------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      +++..-...                  ...+..+.......|..+.|+..++..++.+=
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            777542110                  23455677777889999999999999998863

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.26  E-value=0.0006  Score=36.37  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (301)
                      +++.+|.++...|++++|+..|+++++.+|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666665

>PRK10941 hypothetical protein; Provisional

Probab=97.17  E-value=0.0074  Score=49.75  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      ..++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+......+
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            345556677777777777777777777777777777777777777777777777777777777777665444433

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.17  E-value=0.17  Score=45.61  Aligned_cols=148  Identities=12%  Similarity=0.062  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  144 (301)
                      .|...+.-....|+.+-|...+..+.+.+ |+.+.+...-+......|++..|...+++..+..|+...+-.....+..+
T Consensus       333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r  412 (577)
T KOG1258|consen  333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR  412 (577)
T ss_pred             HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH
Confidence            34444444444588888888887777766 67777777888888888888888888888888778888877777888888


Q ss_pred             cCChhHHHH---HHHHHHHhcCCC----HHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          145 QGNFPTAIE---WLNKYLETFMAD----HDAWRELAEIY-VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       145 ~g~~~~A~~---~~~~~l~~~p~~----~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      .|+.+.+..   ++..... ...+    ...+...+... .-.++.+.|...+.+++...|++...+..+-.+....+
T Consensus       413 ~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  413 KGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             hcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            888887774   2222211 1111    22334444443 33577888888888888888888877777776666555

>PRK10941 hypothetical protein; Provisional

Probab=97.16  E-value=0.0069  Score=49.91  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ...++-.+|...++++.|+.+.+..+.+.|+++.-+.-.|.+|..+|.   +..|...++..++..|+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence            456788899999999999999999999999999999999999999999   99999999999999996

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.10  E-value=0.01  Score=41.24  Aligned_cols=105  Identities=14%  Similarity=0.053  Sum_probs=66.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~  184 (301)
                      +.-++..|++-+|++..+..+..++++..+|    .++..+|..     +++.+-.....+....+.           -.
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~i-----f~~lA~~ten~d~k~~yL-----------l~   62 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTI-----FYKLAKKTENPDVKFRYL-----------LG   62 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHH-----HHHHHHhccCchHHHHHH-----------HH
Confidence            4556777777888888877777777666433    122223321     223333332222333333           35


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ++.+|.++..+.|..+..++.+|.-+-....   |++++...++++..
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~---Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKY---YKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhcc
Confidence            8899999999999998888888776555555   78888888877765

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.088  Score=45.28  Aligned_cols=164  Identities=12%  Similarity=0.133  Sum_probs=118.8

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHH------------HHhCCChHHHHHHHHHHHHhCCCchhhHHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIA------------AMDCQCLDVAKDCIKVLQKQFPESKRVGRL  103 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  103 (301)
                      .....+.+.+...++..       +|+...+|...-.+            .....-+++-+.+...+++.+|++-.+|..
T Consensus        42 ~~yd~e~l~lt~~ll~~-------npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   42 KEYDEEHLELTSELLEK-------NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             cccchHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            44557788888888877       77655554422111            111224566778889999999999999999


Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205          104 EGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus       104 ~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      +..++.+.+  ++..=+..++++++.+|.+..+|...-.+.....    ...+-+.+..+++..++.+-.+|.....+..
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            999998775  4678899999999999999888776555544432    2567788899999999999999988776665


Q ss_pred             H------ccc------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          178 S------LQM------YKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       178 ~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      .      .|+      ...-+..-..|+-.+|++..+|+..
T Consensus       195 ~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  195 TLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             HhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            2      231      3345566677788899998877663

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.08  E-value=0.017  Score=42.49  Aligned_cols=86  Identities=21%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+.......+..++++++..++..+.-..|+.+.+...-|.++...|+|.+|+..++...+..+..+...-.++.|+
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL   88 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL   88 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence            34445555666667888899988888888888999888888899999999999999999998887777777777777777


Q ss_pred             HHcCCh
Q 022205          143 KAQGNF  148 (301)
Q Consensus       143 ~~~g~~  148 (301)
                      ..+|+.
T Consensus        89 ~al~Dp   94 (153)
T TIGR02561        89 NAKGDA   94 (153)
T ss_pred             HhcCCh
Confidence            777764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.03  E-value=0.13  Score=47.38  Aligned_cols=159  Identities=15%  Similarity=0.018  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhC-----CChHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhcC
Q 022205           64 WTLYEQVSIAAMDC-----QCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAKG-----LWAEAEKAYSSLLEDN  128 (301)
Q Consensus        64 ~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~  128 (301)
                      ......++.++..-     .|.+.|+.++..+...     .-..+.+.+.+|.+|....     +...|+.+|.++-...
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            34444556655543     5889999999988771     1125567788999998853     7788999999997766


Q ss_pred             CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHH
Q 022205          129 PLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       129 p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~  201 (301)
                        ++.+.+.+|.++..-.   ++..|..+|..+...  .+..+.+.+|.+|..-    .+...|..+|.++...+  ++.
T Consensus       324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~  397 (552)
T KOG1550|consen  324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS  397 (552)
T ss_pred             --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence              4556688898888766   567999999998875  4788899999998753    47889999999999887  556


Q ss_pred             HHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc
Q 022205          202 YHLAYADVLYTL-GGVDNILLAKKYYASTID  231 (301)
Q Consensus       202 ~~~~la~~~~~~-~~~~~~~~A~~~~~~al~  231 (301)
                      +.+.++..+... +.   +..+.-.+.....
T Consensus       398 A~~~~~~~~~~g~~~---~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  398 AAYLLGAFYEYGVGR---YDTALALYLYLAE  425 (552)
T ss_pred             hHHHHHHHHHHcccc---ccHHHHHHHHHHH
Confidence            566666555433 44   5555444444333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.02  E-value=0.24  Score=44.71  Aligned_cols=183  Identities=10%  Similarity=0.001  Sum_probs=139.9

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHH
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLDPVLH  135 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~  135 (301)
                      .++++.....|..........|+++...-.+++.+--.......|...+......|+.+-|-..+..+.+. .|+.+.+.
T Consensus       290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~  369 (577)
T KOG1258|consen  290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH  369 (577)
T ss_pred             CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence            44555566667776777788899999999999998866678889999999999999999999888888874 47777777


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHH
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADV  209 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~---~~~~al~~~p~~---~~~~~~la~~  209 (301)
                      ..-+...-..|+++.|...+++..+..|+...+-..........|+.+.+..   .+.....-..+.   ...+...+..
T Consensus       370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL  449 (577)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence            7778888889999999999999999889888888888888888999988874   222222111111   2334444544


Q ss_pred             HH-HcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205          210 LY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (301)
Q Consensus       210 ~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  243 (301)
                      .+ -.++   .+.|...+.+++...|. +...+..
T Consensus       450 ~~~i~~d---~~~a~~~l~~~~~~~~~-~k~~~~~  480 (577)
T KOG1258|consen  450 RYKIRED---ADLARIILLEANDILPD-CKVLYLE  480 (577)
T ss_pred             HHHHhcC---HHHHHHHHHHhhhcCCc-cHHHHHH
Confidence            33 4456   99999999999999996 5554443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.02  E-value=0.0018  Score=35.48  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYL  159 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l  159 (301)
                      +..+|.+|...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566666666666666666666644

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.01  E-value=0.0069  Score=54.03  Aligned_cols=132  Identities=16%  Similarity=0.090  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      .....+++.+|.++..+..-+..+...|+..+|..++..++-..|...  -....+|.++.+.|...+|--++..|+.-.
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            344555666776666655555555666777777777777776665442  356667777777777777776776666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~  253 (301)
                      |.....++.+|.++..+++   +...+.+|..+.+.+|.  .....--....|+.++-+
T Consensus       280 ~~~t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~  335 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQ  335 (886)
T ss_pred             ccccccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            6555557777777777777   77777777777777775  112222334445555443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.97  E-value=0.0016  Score=33.95  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      ++..+|.++...|+++.|+.+|++++++.|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.91  E-value=0.0065  Score=52.98  Aligned_cols=129  Identities=16%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  189 (301)
                      ..|+.-.|-.....++...|.++......+.+....|.|+.+...+..+-..-.....+...+-...+..|+++.|....
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            45889999999999999999999988889999999999999999887766554444555556667778899999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (301)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (301)
                      .-.+.-.-.++++...-+.....+|-   +++|..++.+.+.++|. .-.+|.
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~-~~~g~v  429 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE-TQSGWV  429 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh-hcccce
Confidence            88887777788887777777788888   99999999999999996 444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.89  E-value=0.005  Score=50.62  Aligned_cols=65  Identities=12%  Similarity=0.157  Sum_probs=38.4

Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      ....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.||-+|+.++|.+..++.+.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR  190 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR  190 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence            34455666666666666666666666666666665555556666666666666666665554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.88  E-value=0.0075  Score=36.14  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      .+.+|..+++.|+|+.|..+.+.+++++|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3444444555555555555555555555554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.88  E-value=0.025  Score=38.28  Aligned_cols=64  Identities=17%  Similarity=0.089  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 022205           84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGN  147 (301)
Q Consensus        84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~  147 (301)
                      +.-++..+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344566666777777777777777777777777777777777766554  3333344444444433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.87  E-value=0.0026  Score=52.27  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (301)
                      +.++...+|.++..|...+......|.+.+--..|..++..+|.+.+.|.. ...-+...++++.+...|.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555677788888877777777777888888888888888888887765 3445566778888888888888888888


Q ss_pred             HHHHHH
Q 022205          166 HDAWRE  171 (301)
Q Consensus       166 ~~~~~~  171 (301)
                      |..|..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            777754

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.86  E-value=0.006  Score=50.17  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  245 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~  245 (301)
                      +.-....|+.++|...|+.|+.+.|+++.++..+|.....-++   .-+|-.+|-+|+.++|. +..++.+-.
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~-nseALvnR~  191 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPG-NSEALVNRA  191 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCC-chHHHhhhh
Confidence            3334567999999999999999999999999999999988888   99999999999999996 877776543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.84  E-value=0.22  Score=47.05  Aligned_cols=117  Identities=16%  Similarity=0.065  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--  132 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--  132 (301)
                      +......++.....+++++|..++.++...-|.         .....-+.|.+....|++++|+...+.++..-|.+.  
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            334444577788889999999999888775543         123455678888899999999999999999777653  


Q ss_pred             ---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHH--HHHHHHHHHcc
Q 022205          133 ---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAW--RELAEIYVSLQ  180 (301)
Q Consensus       133 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~--~~lg~~~~~~~  180 (301)
                         .+...+|.+..-.|++++|..+..++.+....    ....|  ...+.++..+|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence               36778888999999999999999888776322    22223  34466666777

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.11  Score=46.70  Aligned_cols=101  Identities=18%  Similarity=-0.013  Sum_probs=46.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HHHhcCCCHHHHHHH------HHHHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YLETFMADHDAWREL------AEIYV  177 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~~l------g~~~~  177 (301)
                      ...+...+....+......++..+|.+..++.+++......|..-.+...+.. +....|++..+...+      |....
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK  153 (620)
T ss_pred             HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence            33334444444555555555555555555555555544444443333333322 444444444333322      44444


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLA  205 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~  205 (301)
                      ..|+..++....+++..+.|.++.+...
T Consensus       154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         154 LLGRTAEAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             HhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence            4444455555555555555554443333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.72  E-value=0.035  Score=40.89  Aligned_cols=76  Identities=17%  Similarity=-0.016  Sum_probs=51.8

Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ..-...++.+++...+....-+.|+.+..-..-|.++...|+|.+|+..++....-.+..+...-.++.|++.+|+
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            3334466666777777666666777777766677777777777777777777766666666666667777777776

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.60  E-value=0.0039  Score=51.32  Aligned_cols=87  Identities=10%  Similarity=0.067  Sum_probs=74.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          120 AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       120 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      .|.++....|+++..|...+..-...|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3455566788899999998888888899999999999999999999999976 444567789999999999999999999


Q ss_pred             CHHHHHHH
Q 022205          199 VPLYHLAY  206 (301)
Q Consensus       199 ~~~~~~~l  206 (301)
                      +|..|..+
T Consensus       175 ~p~iw~ey  182 (435)
T COG5191         175 SPRIWIEY  182 (435)
T ss_pred             CchHHHHH
Confidence            99877654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.57  E-value=0.017  Score=34.64  Aligned_cols=40  Identities=13%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI  106 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~  106 (301)
                      ++.+|..+++.|+|+.|..+++.+++..|++..+..+...
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4455666666666666666666666666666665554433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.56  E-value=0.37  Score=40.27  Aligned_cols=175  Identities=12%  Similarity=-0.000  Sum_probs=112.9

Q ss_pred             HHhCCChHHHHHHHHHHHHhC-CCc-------hhhHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC------
Q 022205           74 AMDCQCLDVAKDCIKVLQKQF-PES-------KRVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD------  131 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~~------  131 (301)
                      ....|+++.|..++.++-... ..+       ...++..|......+ +++.|..+++++++.    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356799999999999887755 222       345677788888888 999999999999875    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCChh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Q 022205          132 -PVLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAY  206 (301)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l  206 (301)
                       ..++..++.++...+.++   +|..+++.+-...|+.+..+..--.+....++.+.+.+.+.+++..-+ .....-..+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             226677888888877654   566666667677788787775555555558889999999999887544 222222222


Q ss_pred             HHHHH-HcCCCCcHHHHHHHHHHHhcc--cCCCchhHhhhHHHHHHHHHh
Q 022205          207 ADVLY-TLGGVDNILLAKKYYASTIDL--TGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       207 a~~~~-~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ..+.. ....   ...|...+...+..  .|. .-. |....++..-+..
T Consensus       163 ~~i~~l~~~~---~~~a~~~ld~~l~~r~~~~-~~~-~~e~~vl~~~~~~  207 (278)
T PF08631_consen  163 HHIKQLAEKS---PELAAFCLDYLLLNRFKSS-EDQ-WLEKLVLTRVLLT  207 (278)
T ss_pred             HHHHHHHhhC---cHHHHHHHHHHHHHHhCCC-hhH-HHHHHHHHHHHHH
Confidence            22211 1123   56677777666643  342 222 6666666555543

It is also involved in sporulation [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.49  E-value=0.058  Score=52.77  Aligned_cols=164  Identities=15%  Similarity=0.030  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhCCChHHHHH------HHHHHH-HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCC
Q 022205           66 LYEQVSIAAMDCQCLDVAKD------CIKVLQ-KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--------DNPL  130 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~------~~~~~~-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~  130 (301)
                      -..+-+...+..|.+.+|..      ++.... .+.|+....+..++.++.+.|++++|+..-.++.-        ..|+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            34445777777888887777      555333 35678889999999999999999999999887754        2355


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-----
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-----  197 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----  197 (301)
                      ....+.+++...+..++...|...+.++...        .|.-.....+++.++...++++.|+++.+.|+..+.     
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            6678888999999999999999999988765        344455667899999999999999999999997542     


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          198 ---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       198 ---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                         .....+..++..+...++   +..|+.+......+
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~d---fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKD---FRNALEHEKVTYGI 1128 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHH---HHHHHHHHhhHHHH
Confidence               223456667777777777   77777766665544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.57  Score=45.25  Aligned_cols=171  Identities=9%  Similarity=-0.038  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------------  128 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------  128 (301)
                      .+.+|.++|.+.++.|...+|++.|-+     .++|..+...-.+..+.|.|++-+.++.-+-+..              
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence            466788889899999999998888744     3566667777777888888888888776654321              


Q ss_pred             --------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          129 --------------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       129 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                                    |+.+. ....|.-++..|.|+.|.-+|.        +...|..|+..+...|+|+.|+...++|-.
T Consensus      1178 kt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                          22221 1234444444455554444443        345577888899999999999888877632


Q ss_pred             hC-----------CC--------------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          195 SQ-----------PT--------------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       195 ~~-----------p~--------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      ..           ..              +..-+-.+...|...|-   |++-+..++.++-+.-. +...+..|+..|+
T Consensus      1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy---FeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY---FEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred             hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc---HHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence            11           00              01123345555667777   88888888888777653 6666666777776


Q ss_pred             HH
Q 022205          250 AI  251 (301)
Q Consensus       250 ~l  251 (301)
                      +.
T Consensus      1325 ky 1326 (1666)
T KOG0985|consen 1325 KY 1326 (1666)
T ss_pred             hc
Confidence            54

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.66  Score=41.86  Aligned_cols=157  Identities=16%  Similarity=0.054  Sum_probs=109.4

Q ss_pred             CChHHHHHHHHHHHHhC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Q 022205           78 QCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-------------------  126 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------------------  126 (301)
                      ..|++|...|.-+....            |.+...+..++.+...+|+.+-|-...++++=                   
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            45677777776666533            45567788899999999999988888877762                   


Q ss_pred             --cCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HcccHHHHHHHHHHH-----Hh
Q 022205          127 --DNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYV-SLQMYKQAAFCYEEL-----IL  194 (301)
Q Consensus       127 --~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~-~~~~~~~A~~~~~~a-----l~  194 (301)
                        ..|.|-.   +.+.....+.+.|-+..|.++++-.+.++|. +|.+...+-++|. +..+|.=-+..++..     +.
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence              1233333   3334445566789999999999999999998 8877666666654 456777667666655     23


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .-|+.+. -..+|..|.........+.|...+.+|+...|.
T Consensus       412 ~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            3454433 344555555555533578899999999999884

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.40  E-value=0.0081  Score=47.36  Aligned_cols=58  Identities=26%  Similarity=0.278  Sum_probs=39.5

Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  199 (301)
                      ....++.+.+.+.|.+++++-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3455666666677777777777666677777777777777777777777777776655

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.40  E-value=0.0061  Score=48.00  Aligned_cols=60  Identities=25%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205          107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (301)
Q Consensus       107 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (301)
                      .....++.+.|.+.|.+++...|.....|+++|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            445678899999999999999999999999999999999999999999999999999773

>smart00028 TPR Tetratricopeptide repeats

Probab=96.35  E-value=0.0067  Score=31.35  Aligned_cols=30  Identities=20%  Similarity=0.108  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (301)
                      ++..+|.++...|++++|+..++++++.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.69  Score=40.93  Aligned_cols=204  Identities=13%  Similarity=0.067  Sum_probs=129.6

Q ss_pred             hCCChHHHHHHHHHHHHhCC------Cchhh--------HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-------C
Q 022205           76 DCQCLDVAKDCIKVLQKQFP------ESKRV--------GRLEGILLEAKGLWAEAEKAYSSLLE---DNPL-------D  131 (301)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p------~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~-------~  131 (301)
                      ..|-+++|.++-++++....      ....+        +-.+..|-.-.|++.+|+.....+..   ..|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            45778888888888876432      12222        22345566667999999988877765   3444       2


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---------
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-D--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---------  199 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------  199 (301)
                      +.+..-+|......|.++.|...|..+.+.-.. +  .-...++|..|...|+-+.-.+..   -.+.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~l---d~i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKAL---DLIGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHH---HhcCCCCCCcchHHHH
Confidence            345666777777788899999999999876432 2  234467899999987755443333   3445553         


Q ss_pred             -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh-----hhHHHHHHHHHhhhccCCccccc--------c
Q 022205          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL-----FGICLCSSAIAQLTKGRNKEDKE--------S  265 (301)
Q Consensus       200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~~l~~~~~~l~~~~~~~~~~~~~--------~  265 (301)
                       ..+++..|-..+..++   +.+|...+.+.++.....+..-+     .-|+.+...+|+...+.+-....        -
T Consensus       444 ~a~~~~v~glfaf~qn~---lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQND---LNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence             2367778888899999   99999999999998532111111     12233333444433333222111        2


Q ss_pred             hHHHHHHHHHHHHHHHhhCC
Q 022205          266 PELQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~  285 (301)
                      ....-|+...+.++|+..+.
T Consensus       521 i~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  521 IPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             chHHHHHHHHHHHHHHHhCc
Confidence            33455777788888887766

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.19  E-value=0.27  Score=34.78  Aligned_cols=62  Identities=15%  Similarity=0.044  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHH-------hhCCCCHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELI-------LSQPTVPL----YHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al-------~~~p~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ++-.|+.++..+|+|++++....++|       +++.+...    +.+..|..+..+|+   .++|+..|+.+.++
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence            34445555555666655555555444       33344433    23455677777777   77777777777654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.09  E-value=0.13  Score=36.30  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=49.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHH-------HhcCCCHH----
Q 022205          111 KGLWAEAEKAYSSLLEDNPL------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYL-------ETFMADHD----  167 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~----  167 (301)
                      .|-|++|...++++.....+            +..++..|+..+..+|+|++++..-..++       +++.+...    
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            35566666666666553211            12245556666677777766655544444       34444444    


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +.+..|..+...|+.++|+..|+.+-+
T Consensus       102 aVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  102 AVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            345678888889999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.32  Score=43.85  Aligned_cols=113  Identities=15%  Similarity=-0.054  Sum_probs=83.7

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCHHHHHHH------HHHH
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS-SLLEDNPLDPVLHKRR------VAIA  142 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~l------~~~~  142 (301)
                      +.......++...+.-.+...+..+|.+..+...++......|....+...+. .+....|++..+...+      +...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            45666667788788888888888888888888888887777766666555544 4777888888766666      7777


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      ...|+..++...+.++....|.++.....+.....+...|
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~  192 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW  192 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence            7788888888888999998888877666555554444433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.03  E-value=1.3  Score=41.45  Aligned_cols=80  Identities=19%  Similarity=0.054  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhCC----CchhhHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCChhH
Q 022205           82 VAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDN--PLDPV----LHKRRVAIAKAQGNFPT  150 (301)
Q Consensus        82 ~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~--p~~~~----~~~~l~~~~~~~g~~~~  150 (301)
                      .|+.+++.+.+..+    ....+++.+|.++. ...+++.|..++++++...  ++..+    +...++.++...+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            34555555553222    22334455555544 4555666666666555433  22221    2223344444444444 


Q ss_pred             HHHHHHHHHHhc
Q 022205          151 AIEWLNKYLETF  162 (301)
Q Consensus       151 A~~~~~~~l~~~  162 (301)
                      |...+++.++..
T Consensus       118 a~~~l~~~I~~~  129 (608)
T PF10345_consen  118 ALKNLDKAIEDS  129 (608)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.03  E-value=0.1  Score=41.64  Aligned_cols=83  Identities=17%  Similarity=0.118  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCChhHH-------HHHHHHHHHhcCC--C----HHHHHH
Q 022205          112 GLWAEAEKAYSSLLED----NP---LDPVLHKRRVAIAKAQGNFPTA-------IEWLNKYLETFMA--D----HDAWRE  171 (301)
Q Consensus       112 ~~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~l~~~p~--~----~~~~~~  171 (301)
                      ..+++|+..|.-++-.    ..   .-+..+..++.+|...|+.+..       ...|.++++....  .    ....+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            4566666666655531    11   1134666777777777774433       3333333332211  1    234455


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHh
Q 022205          172 LAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +|.+..+.|++++|+..|.+++.
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHc
Confidence            56666666666666666666554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.02  E-value=0.034  Score=49.27  Aligned_cols=89  Identities=15%  Similarity=0.005  Sum_probs=53.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      .+....++..+.+++...|.....+...+.++...   |+.-.|+.....+++.+|....+++.|+.++...+++.+|+.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            34455566666666666666665555555555543   444555666666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCC
Q 022205          154 WLNKYLETFMAD  165 (301)
Q Consensus       154 ~~~~~l~~~p~~  165 (301)
                      +...+...+|.+
T Consensus       467 ~~~alq~~~Ptd  478 (758)
T KOG1310|consen  467 CHWALQMSFPTD  478 (758)
T ss_pred             hHHHHhhcCchh
Confidence            666666555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.94  E-value=0.16  Score=39.20  Aligned_cols=97  Identities=5%  Similarity=-0.071  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHH----HH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----YH  203 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~~  203 (301)
                      .++..+|..|...|+.+.|++.|.++.......   .+.++.+..+.+..++|.....+..++-..-  +.++.    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            356677777777777777777777766654332   3456666677777777777777777665432  22222    22


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          204 LAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ..-|..+...++   |..|...|..+..-
T Consensus       117 ~~~gL~~l~~r~---f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  117 VYEGLANLAQRD---FKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhch---HHHHHHHHHccCcC
Confidence            334555666777   88888888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.94  E-value=0.029  Score=49.61  Aligned_cols=90  Identities=23%  Similarity=0.141  Sum_probs=77.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      .+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.....+++++|....+|+.|+.++...+++.+|+.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            35677899999999999999999999988888875   566678888888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCH
Q 022205          188 CYEELILSQPTVP  200 (301)
Q Consensus       188 ~~~~al~~~p~~~  200 (301)
                      +...+....|.+.
T Consensus       467 ~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  467 CHWALQMSFPTDV  479 (758)
T ss_pred             hHHHHhhcCchhh
Confidence            9888877777553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.92  E-value=0.18  Score=38.92  Aligned_cols=95  Identities=15%  Similarity=0.011  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCHH----HHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADHD----AWR  170 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~----~~~  170 (301)
                      ++..+|..|.+.|++++|++.|.++.......   .+.+..+..+....|++.....++.++-..-.  .++.    .-.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44455555555555555555555554433221   22444555555555666665555555443321  1121    223


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHh
Q 022205          171 ELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       171 ~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      .-|..++..++|..|...|-.+..
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCc
Confidence            446666777888888877766653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.84  E-value=0.1  Score=37.68  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCC---ChHHHHHHHHHHHH-hCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205           66 LYEQVSIAAMDCQ---CLDVAKDCIKVLQK-QFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH  135 (301)
Q Consensus        66 ~~~~la~~~~~~~---~~~~A~~~~~~~~~-~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  135 (301)
                      ..+++|+++....   +..+.+.+++.+++ ..| ......+.++.-+.+.++|+.++.+.+..++..|++..+.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4556677777664   45677888888886 445 3445667788888888888888888888888888887764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.75  E-value=2.2  Score=41.75  Aligned_cols=175  Identities=17%  Similarity=0.128  Sum_probs=113.3

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      .+++..+.|+.|+..|+++...+|+..   .+.+..|.....+    |   .+++|+..|++... .|.-|--|...+.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  561 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV  561 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence            345666889999999999999999554   4566667665543    2   57888888887543 56667778888999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHhhCCCCHHHH---HHHH------
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYH---LAYA------  207 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~---~~la------  207 (301)
                      |.++|++++-++.+.-+++..|++|..-...-.+.+++.     +-..|....--++...|.....-   ..+-      
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQ  641 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc
Confidence            999999999999999999999999764333222222221     22344455555555555432210   0000      


Q ss_pred             ----------------------HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          208 ----------------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       208 ----------------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                                            .+.+..|.   ..--...++++..+.|   .++......|...+|+
T Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  703 (932)
T PRK13184        642 QATLFCQLDKTPLQFRSSKMELFLSFWSGF---TPFLPELFQRAWDLRD---YRALADIFYVACDLGN  703 (932)
T ss_pred             cCCceeeccCchhhhhhhhHHHHHHHHhcC---chhhHHHHHHHhhccc---HHHHHHHHHHHHHhcc
Confidence                                  11223333   4444556777777654   3777777777777776

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.73  E-value=0.03  Score=31.34  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .++.++|.+|...|++++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34566666666666666666666666644

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=0.64  Score=35.38  Aligned_cols=119  Identities=15%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             HhCCChHHHHHHHHHHHHhCCC-ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--HHHHHHHHHHHHcCCh
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPE-SK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--P--VLHKRRVAIAKAQGNF  148 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~--~~~~~l~~~~~~~g~~  148 (301)
                      ...+..++|+.-|..+.+..-. .| -+.+..|.+....|+...|+..|..+-...|--  .  .+...-+.++...|.|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            3445555555555555443321 11 223334445555555555555555544432211  0  1223334444445555


Q ss_pred             hHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          149 PTAIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       149 ~~A~~~~~~~l-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      ++-....+..- ..+|--..+.-.||..-++.|++.+|.+.|....
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            44444333221 1122223334444555555555555555554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=2  Score=41.79  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----------
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------  165 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----------  165 (301)
                      +.+.+|..+|....+.|...+|++.|-++     +++..|.....+..+.|.|++-+.++..+.+.-...          
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            56778999999999999999999888765     456667778888888999999988888776542111          


Q ss_pred             -----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          166 -----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       166 -----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                                       ..-.-..|+-++..|.|+.|.-+|..        ..-|..++..+..+|+   |+.|+..-++
T Consensus      1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge---yQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE---YQGAVDAARK 1245 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH---HHHHHHHhhh
Confidence                             11122456777777788877766643        3346778888999999   9999888776


Q ss_pred             HhcccCCCchhHhhhHHHHHH
Q 022205          229 TIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       229 al~~~p~~~~~~~~~l~~~~~  249 (301)
                      |-      +.+.|-..+.++.
T Consensus      1246 An------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1246 AN------STKTWKEVCFACV 1260 (1666)
T ss_pred             cc------chhHHHHHHHHHh
Confidence            53      4455555555443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.69  E-value=1.1  Score=39.48  Aligned_cols=87  Identities=17%  Similarity=0.162  Sum_probs=57.5

Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      +..-.+.|..+|-++.+.--..+.++..-|.+ +...|++.-|..+|+-.+...|+++.....+-..+...|+   -..|
T Consensus       409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~na  485 (660)
T COG5107         409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENA  485 (660)
T ss_pred             HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHH
Confidence            33445556666666555432333333333333 4457888888888888888888888777777777778888   8888


Q ss_pred             HHHHHHHhccc
Q 022205          223 KKYYASTIDLT  233 (301)
Q Consensus       223 ~~~~~~al~~~  233 (301)
                      ...|++++..-
T Consensus       486 raLFetsv~r~  496 (660)
T COG5107         486 RALFETSVERL  496 (660)
T ss_pred             HHHHHHhHHHH
Confidence            88888777553

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.56  E-value=0.6  Score=33.87  Aligned_cols=70  Identities=13%  Similarity=0.044  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHcC---ChhHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          134 LHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       134 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ..++++.++.+..   +..+.+.+++..++ ..|.. -+..+.|+..+++.++|+.++.+....++..|++..+.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4445555554432   34456666666664 33322 34455666666666666666666666666666665543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.17  Score=45.97  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      -|.-+++..+|..++++|...+..-|.+.      .....++.||....+.|.|.++++++-+.+|.++-.....-.+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~  439 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL  439 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            34556666777778887777777555442      255667777777777888888888887777777777777777777


Q ss_pred             HcccHHHHHHHHHHHHh
Q 022205          178 SLQMYKQAAFCYEELIL  194 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~  194 (301)
                      ..|+-++|+.+..+...
T Consensus       440 ~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  440 AEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HhcchHHHHHHHHHHHh
Confidence            77777777777766653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.53  E-value=1.2  Score=37.17  Aligned_cols=122  Identities=16%  Similarity=0.108  Sum_probs=88.9

Q ss_pred             HHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhc----C---CC-------
Q 022205          109 EAKGLWAEAEKAYSSLLEDN----PLD----PVLHKRRVAIAKAQG-NFPTAIEWLNKYLETF----M---AD-------  165 (301)
Q Consensus       109 ~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~----p---~~-------  165 (301)
                      ..+|+++.|..++.++-...    |+.    ...+++.|......+ +++.|..+++++.+..    +   ..       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46799999999999986644    332    236778888888899 9999999999998873    1   11       


Q ss_pred             HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          166 HDAWRELAEIYVSLQMYK---QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      ..++..++.+|...+.++   +|..+.+.+-...|+.+..+...-.+....++   .+.+.+.+.+.+.--
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHhc
Confidence            235678899999887755   55555555656678877776444455555777   888888888887653

It is also involved in sporulation [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.48  E-value=0.18  Score=40.17  Aligned_cols=28  Identities=18%  Similarity=0.390  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      +.+.+|.+..+.|++++|+.+|.+++..
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            4444555555555555555555555443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.28  Score=44.70  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      +.+-+.-+++..+|..+++.|...+..-|.|      ......++.||....+.+.|.++++.|-+.+|.++......-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3345666778899999999999999988776      3456789999999999999999999999999999998888888


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          209 VLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       209 ~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      +....|.   -++|+.+..+....
T Consensus       437 ~~~~E~~---Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDK---SEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcc---hHHHHHHHHHHHhh
Confidence            8888888   88898888776544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.33  E-value=2.5  Score=39.65  Aligned_cols=150  Identities=15%  Similarity=0.072  Sum_probs=88.7

Q ss_pred             HHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCC--c----hhhHHHHHHHHHHcCCH
Q 022205           43 LRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAM-DCQCLDVAKDCIKVLQKQFPE--S----KRVGRLEGILLEAKGLW  114 (301)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~~a~~~~~~~~~  114 (301)
                      +..+...+.......++.| ....++.++|..++ ...+++.|..++.+++.....  .    .....+++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            3344444443334556666 46778888998887 678999999999999877632  2    22345678888887766


Q ss_pred             HHHHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhc--CCCHHHHH----HHHHHHHHcccH
Q 022205          115 AEAEKAYSSLLEDNPL----DPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETF--MADHDAWR----ELAEIYVSLQMY  182 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~----~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~----~lg~~~~~~~~~  182 (301)
                      . |...+++.++...+    .+...+.+.  ......+++..|+..++......  +.++.+..    .-|.+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            6 99999998885443    122222222  12222357777777777766654  23433221    223334444445


Q ss_pred             HHHHHHHHHHH
Q 022205          183 KQAAFCYEELI  193 (301)
Q Consensus       183 ~~A~~~~~~al  193 (301)
                      +++++..+++.
T Consensus       196 ~d~~~~l~~~~  206 (608)
T PF10345_consen  196 DDVLELLQRAI  206 (608)
T ss_pred             hhHHHHHHHHH
Confidence            55555555443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.27  E-value=0.89  Score=39.96  Aligned_cols=162  Identities=11%  Similarity=-0.099  Sum_probs=102.7

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh---
Q 022205           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET---  161 (301)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---  161 (301)
                      -++++++.-.|-.+.+|+-........++-+.|+...++++...|.   ....++.+|...++-+....+|+++...   
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            4578888888999999999999999999999999999998887776   4455666666555544444444443221   


Q ss_pred             ---------------cCC-CH-----------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHc
Q 022205          162 ---------------FMA-DH-----------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD-VLYTL  213 (301)
Q Consensus       162 ---------------~p~-~~-----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~  213 (301)
                                     +|. .+           -+|..+-..-.+..-.+.|...|-++-+..--.+.++..-|. -|+..
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence                           110 01           123333333344455678888888876654233333333333 36677


Q ss_pred             CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          214 GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |+   +.-|-..|+-.+...|+ ..-..+-...-...+++
T Consensus       446 ~d---~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~ind  481 (660)
T COG5107         446 GD---RATAYNIFELGLLKFPD-STLYKEKYLLFLIRIND  481 (660)
T ss_pred             CC---cchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCc
Confidence            88   99999999999998885 33233333334445555

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.27  Score=40.20  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=33.9

Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      .+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..+...|+++.+
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34444555555555555555555555555555555555555555555555555555555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.27  E-value=0.91  Score=39.89  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=69.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      ...|.++..++++.+|...|.+......+.+.     ++.++....+-.++.+.-...+-..-+..|+++......|.+.
T Consensus        10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~   89 (549)
T PF07079_consen   10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA   89 (549)
T ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            34455666666666666666666554433322     2222222223344555555555555555666666666666666


Q ss_pred             HHcccHHHHHHHHHHHHhhC----C-----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          177 VSLQMYKQAAFCYEELILSQ----P-----------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~----p-----------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ++.+.+.+|+..+..--..-    |           ++...-...|.++..+|+   +.+++..+.+.+..
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~---f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR---FSEGRAILNRIIER  157 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHH
Confidence            66666666665544332210    0           011122345777888888   88888888877653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.20  E-value=2.3  Score=38.37  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=35.0

Q ss_pred             HHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205           89 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        89 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      +-++.+|.+..+|..+-.-+..+ -+++..+.|++.+...|..+.+|...........+|+...++|.+++.
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444455555555444444333 455555555555555555555555555555555555555555555443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.19  E-value=3.1  Score=39.80  Aligned_cols=167  Identities=14%  Similarity=-0.007  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHH--H
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPV--L  134 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~--~  134 (301)
                      .-.-.|.+....|+++.|.++.+.++..-|.+     ..+....|.+..-.|++++|..+...+.+.    +.....  +
T Consensus       460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~  539 (894)
T COG2909         460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS  539 (894)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            33345778888999999999999999988744     345667788888899999999999888775    222222  3


Q ss_pred             HHHHHHHHHHcCChh--HHHHHHHHHH----HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----CCCC--HH-
Q 022205          135 HKRRVAIAKAQGNFP--TAIEWLNKYL----ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS----QPTV--PL-  201 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~--~A~~~~~~~l----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-  201 (301)
                      ....+.++..+|+..  +....|...-    ...|.+.......+.++...-+++.+..-....++.    .|..  .. 
T Consensus       540 ~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~  619 (894)
T COG2909         540 LLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRL  619 (894)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHH
Confidence            444567788888433  3333333322    223443333333344443333366555555555543    2322  22 


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +...++.+.+..|+   +++|.....+...+-.+
T Consensus       620 ~~~~LA~l~~~~Gd---l~~A~~~l~~~~~l~~~  650 (894)
T COG2909         620 ALSMLAELEFLRGD---LDKALAQLDELERLLLN  650 (894)
T ss_pred             HHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcC
Confidence            23478999999999   99999999988776443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.96  E-value=0.12  Score=28.18  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHcccHHHHHHH--HHHHHhhCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFC--YEELILSQP  197 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~--~~~al~~~p  197 (301)
                      .|+.+|-.+...|++++|+..  |.-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555555555555555555  224444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.94  E-value=0.69  Score=41.33  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=73.6

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (301)
                      .+..++++++....... +..|.- .......+..+..+|-++.|+...+        ++...   -.+....|+.+.|.
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~r---FeLAl~lg~L~~A~  338 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHR---FELALQLGNLDIAL  338 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHH---HHHHHHCT-HHHHH
T ss_pred             HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHH---hHHHHhcCCHHHHH
Confidence            45678888877776411 122322 2234556677778888888875322        23333   34456788888887


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      +..++     .+++..|..||...+..|+++-|..||+++-.        +..+.-+|...|+   .+.-.+....|.
T Consensus       339 ~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~---~~~L~kl~~~a~  400 (443)
T PF04053_consen  339 EIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD---REKLSKLAKIAE  400 (443)
T ss_dssp             HHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHH
T ss_pred             HHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC---HHHHHHHHHHHH
Confidence            76543     34678899999999999999999888887532        3345566667777   544444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.83  E-value=0.089  Score=29.32  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (301)
                      .++.++|.+|...|++++|+.++++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            466788888888888888888888887653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.32  Score=39.75  Aligned_cols=69  Identities=28%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR  170 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  170 (301)
                      .++-..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|++.++..++..|+++.+-.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            344556788899999999999999999999999999999999999999999999999999999877654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.75  E-value=0.25  Score=48.01  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc----C---ChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      .+++...+.|+.|+..|++.-..-|...+   +.++.|.....+    |   .+++|+..|++.. -.|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            45667778999999999999998887654   777888777653    3   3566777766543 34666778888999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      +|.+.|++++-+++|.-|++..|..|..-
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            99999999999999999999999987643

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=2.1  Score=37.14  Aligned_cols=130  Identities=13%  Similarity=0.024  Sum_probs=92.5

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhCC-C--------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CHHHH
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQFP-E--------SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLH  135 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p-~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~  135 (301)
                      ...++...++.+|..+-+..+.... .        ....|+.+..++...|+...-...+...+..     +.. .....
T Consensus       133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi  212 (493)
T KOG2581|consen  133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI  212 (493)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence            3445566889999888777665321 1        2345667777888888877776666666542     222 23356


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhc--CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETF--MA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      +.+-..|...+.|+.|.....+..--.  .+  .+..++.+|.+..-+++|..|.++|-.|+...|.+.
T Consensus       213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            667788889999999998887765211  11  245678899999999999999999999999999753

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.57  E-value=0.31  Score=33.21  Aligned_cols=31  Identities=19%  Similarity=0.122  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      .+..++|.++...|+   +++|+..+++++++..
T Consensus        42 ~all~lA~~~~~~G~---~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   42 YALLNLAELHRRFGH---YEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence            345666777777777   7777777777776644

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.54  E-value=0.34  Score=42.01  Aligned_cols=57  Identities=12%  Similarity=0.028  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      -..+..||.++++.+-|+....+.+-++|..+..+..-|.++..+.+|.+|...+--
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami  287 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI  287 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335666777777777777777777777777666666666666666666666554443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.50  E-value=0.25  Score=42.74  Aligned_cols=58  Identities=19%  Similarity=0.063  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      ..|..||+..++.+-|+...-+.+.++|.++.-|...|.++..+.+   |.+|.+.+.-+.
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeR---y~eAarSamia~  289 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLER---YSEAARSAMIAD  289 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999   999988776654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.45  E-value=0.5  Score=32.17  Aligned_cols=27  Identities=11%  Similarity=0.213  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      ...++.++...|++++|+..+++++++
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344444445555555555555554443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=3.8  Score=37.27  Aligned_cols=137  Identities=18%  Similarity=0.069  Sum_probs=93.1

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CC----------------CchhhHHHH---HHHHHHcCCHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-----FP----------------ESKRVGRLE---GILLEAKGLWA  115 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p----------------~~~~~~~~~---a~~~~~~~~~~  115 (301)
                      .|.....+.+++..+..+|+.+-|..++.+++=.     .|                .+-..+..+   -..+.+.|-+.
T Consensus       280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r  359 (665)
T KOG2422|consen  280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR  359 (665)
T ss_pred             CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence            5778888999999999999998888777766531     12                222222222   22345569999


Q ss_pred             HHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHccc---HHHH
Q 022205          116 EAEKAYSSLLEDNPL-DPVLHKRRVAIAK-AQGNFPTAIEWLNKYL-----ETFMADHDAWRELAEIYVSLQM---YKQA  185 (301)
Q Consensus       116 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l-----~~~p~~~~~~~~lg~~~~~~~~---~~~A  185 (301)
                      -|.++++-.++.+|. ++.+...+..+|. +..+|.=-|..++..-     ..-|+- ..-..++..|.....   -+.|
T Consensus       360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa  438 (665)
T KOG2422|consen  360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSA  438 (665)
T ss_pred             HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHH
Confidence            999999999999998 8887666666664 4566666666666652     233432 233345666666554   4678


Q ss_pred             HHHHHHHHhhCC
Q 022205          186 AFCYEELILSQP  197 (301)
Q Consensus       186 ~~~~~~al~~~p  197 (301)
                      ...+.+|+...|
T Consensus       439 ~~~l~qAl~~~P  450 (665)
T KOG2422|consen  439 LNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHHhCc
Confidence            888999998877

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.38  E-value=1.3  Score=41.20  Aligned_cols=153  Identities=18%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh---------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR---------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  134 (301)
                      +..|..+|...+..-.++.|...|-+.-. +|.-.-         --...+.+-..-|+|++|...|-.+-+.+   .. 
T Consensus       692 prLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---LA-  766 (1189)
T KOG2041|consen  692 PRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---LA-  766 (1189)
T ss_pred             hHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---hh-
Confidence            44555555555555555555555433221 111100         01233444455588888887775442211   11 


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHH--------------------
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEEL--------------------  192 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~a--------------------  192 (301)
                          ..++...|+|-...++++..-.-..+  -..+|.++|..+..+..|++|.++|...                    
T Consensus       767 ----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE  842 (1189)
T KOG2041|consen  767 ----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE  842 (1189)
T ss_pred             ----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence                12233344443333333321111100  0234555555555555555555554432                    


Q ss_pred             --HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          193 --ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       193 --l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                        ...-|++...+-.+|..+...|-   -++|++.|.+
T Consensus       843 ~la~~Lpe~s~llp~~a~mf~svGM---C~qAV~a~Lr  877 (1189)
T KOG2041|consen  843 VLARTLPEDSELLPVMADMFTSVGM---CDQAVEAYLR  877 (1189)
T ss_pred             HHHHhcCcccchHHHHHHHHHhhch---HHHHHHHHHh
Confidence              12247777777778888888888   8888877765

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.25  E-value=1.4  Score=36.63  Aligned_cols=62  Identities=11%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      |..+|.+|+.+.|.++..++.||.++...|+.=.|+-+|-+++......+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            57788888888888888888888888888888888888888886654457777888777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=94.19  E-value=3.1  Score=35.25  Aligned_cols=165  Identities=12%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------------------  128 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------  128 (301)
                      .+.+...+..+..+-++....++..+|++..++.+++.--  ..-..+|...++++++..                    
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~  266 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ  266 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence            3455567778888888999999999999999998887532  234556677777666411                    


Q ss_pred             ---CCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCH
Q 022205          129 ---PLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVP  200 (301)
Q Consensus       129 ---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~  200 (301)
                         ..+.  .+-.+++.|..++|+..+|++.++...+..|-..  ...-+|-.++....-|.+....+-+.=.+ .|...
T Consensus       267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA  346 (556)
T KOG3807|consen  267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA  346 (556)
T ss_pred             hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence               0112  2445789999999999999999999988877331  23344555555544333332222221111 13332


Q ss_pred             HHHHHHH-------------HHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          201 LYHLAYA-------------DVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       201 ~~~~~la-------------~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ...+.-+             +...+.|-...-..|++...++++.+|.
T Consensus       347 ~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH  394 (556)
T KOG3807|consen  347 AICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH  394 (556)
T ss_pred             HHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence            2222111             1112222212245788899999999995

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.87  E-value=0.97  Score=35.35  Aligned_cols=73  Identities=22%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcccHHHHH
Q 022205          113 LWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAA  186 (301)
Q Consensus       113 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~~~~~~A~  186 (301)
                      .-+.|...|-++-.. .-+++...+.+|..|. ..+.++++.++.+++++.+.    +++.+..|+.++...|+++.|.
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            445677666655442 2356777888887776 56788999999999988644    3888999999999999999884

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.85  E-value=0.87  Score=37.75  Aligned_cols=63  Identities=19%  Similarity=0.077  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+   ...|+..|.+.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Confidence            45666788888888888888888888888888888888888888888888   8888888877655

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.80  E-value=2.3  Score=32.48  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=89.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHccc
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQM  181 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~  181 (301)
                      +.+.+..++|+..|...-+.+-..  ..+..+.+.+....|+...|+..|.++-...|-.    -.+...-+.++...|-
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            345688899999998877654332  3467788999999999999999999987765432    1234556677788899


Q ss_pred             HHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          182 YKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       182 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                      |++-..-.+..- .-+|--..+.-.||...++.|+   +..|.+.|.....
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence            988765554332 2234445577789999999999   9999999998876

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.76  E-value=0.74  Score=45.53  Aligned_cols=138  Identities=15%  Similarity=0.059  Sum_probs=107.1

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--  126 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--  126 (301)
                      ..+.|+....|..++..+...|+.++|+..-.++.-..        |+....+..++...+..++...|...+.++..  
T Consensus       966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen  966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred             hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence            44567888889999999999999999998877665422        35566777888888888888999998888875  


Q ss_pred             ------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          127 ------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       127 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                            .+|.-.....+++.++...++++.|+.+++.++..+-.        ....+..++..+...+++..|+...+..
T Consensus      1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence                  35666667788999999999999999999999986421        2345666777777778887777766665


Q ss_pred             Hh
Q 022205          193 IL  194 (301)
Q Consensus       193 l~  194 (301)
                      +.
T Consensus      1126 ~~ 1127 (1236)
T KOG1839|consen 1126 YG 1127 (1236)
T ss_pred             HH
Confidence            53

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.75  E-value=0.14  Score=28.28  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      ++..||.+-...++|++|+.-|++++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555566666666666555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.74  E-value=5  Score=36.11  Aligned_cols=159  Identities=13%  Similarity=0.038  Sum_probs=106.4

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      +-++..+.-...++.+++.. ..+..+++.++.+|... ..++=...+++.++.+-++...-..++..|.. ++-..+..
T Consensus        76 f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~  152 (711)
T COG1747          76 FGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAE  152 (711)
T ss_pred             hccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHH
Confidence            33444455555666666654 55666777888888876 45666778888888887777777777777666 67777777


Q ss_pred             HHHHHHHhc--------------------CCCHHHHH--------------------HHHHHHHHcccHHHHHHHHHHHH
Q 022205          154 WLNKYLETF--------------------MADHDAWR--------------------ELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       154 ~~~~~l~~~--------------------p~~~~~~~--------------------~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +|.+++...                    |++.+..+                    .+-.-|....+|.+|+.+....+
T Consensus       153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il  232 (711)
T COG1747         153 FFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL  232 (711)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence            777765432                    22322211                    11233445578999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHc-------------CC----CCcHHHHHHHHHHHhcccCC
Q 022205          194 LSQPTVPLYHLAYADVLYTL-------------GG----VDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~-------------~~----~~~~~~A~~~~~~al~~~p~  235 (301)
                      +.+..+..+..++...+...             .+    ..++-.++.-|++.+..+.+
T Consensus       233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG  291 (711)
T COG1747         233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG  291 (711)
T ss_pred             hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence            99988887776666555440             00    12489999999999998876

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.74  E-value=11  Score=40.21  Aligned_cols=153  Identities=13%  Similarity=0.053  Sum_probs=107.1

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  131 (301)
                      ..+......|.+.|......|.++.|...+-.+.+..  -+.+....|..+..+|+-..|+..++..++.+-.+      
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            5566788899999999999999999999888877754  56788899999999999999999999999644222      


Q ss_pred             -----H------HHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------------cccHHH--
Q 022205          132 -----P------VLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVS------------LQMYKQ--  184 (301)
Q Consensus       132 -----~------~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~------------~~~~~~--  184 (301)
                           .      .+...++......|++  +.-++.|..+.+..|..-..++.+|..|.+            .|++..  
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence                 1      1233333444445553  456788999999999777777777755432            355555  


Q ss_pred             -HHHHHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 022205          185 -AAFCYEELILSQPTV--------PLYHLAYADVLYT  212 (301)
Q Consensus       185 -A~~~~~~al~~~p~~--------~~~~~~la~~~~~  212 (301)
                       ++..|.+++.-...+        ...|.-+|.....
T Consensus      1822 ~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred             HHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence             666677777554322        2345555544444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.62  E-value=0.98  Score=37.45  Aligned_cols=62  Identities=23%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      .++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            35556666666777777777777777777777777777777777777777777777766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.58  E-value=5.2  Score=35.84  Aligned_cols=131  Identities=15%  Similarity=-0.025  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      ...++..+.+.|-.+.|+.+.        .++...+   .+..+.|+++.|.+..     ...+++..|..+|.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rF---eLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFV--------TDPDHRF---ELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS--------S-HHHHH---HHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhc--------CChHHHh---HHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcC
Confidence            334455556667777777663        3444444   3446789999987643     34457889999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~  226 (301)
                      +++-|..+|.++-.        +..|..+|...|+.+.-.+....+......     ...-.+++.+|+   .++.+..+
T Consensus       362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd---~~~cv~lL  425 (443)
T PF04053_consen  362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAALLLGD---VEECVDLL  425 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT----HHHHHHHH
T ss_pred             CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHHHHcCC---HHHHHHHH
Confidence            99999999987532        334556666677765555555444433221     112234555666   66666665


Q ss_pred             HHH
Q 022205          227 AST  229 (301)
Q Consensus       227 ~~a  229 (301)
                      .++
T Consensus       426 ~~~  428 (443)
T PF04053_consen  426 IET  428 (443)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.56  E-value=3.5  Score=43.67  Aligned_cols=170  Identities=12%  Similarity=0.078  Sum_probs=114.3

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH---hCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK---QFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP  132 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  132 (301)
                      +.++|......-..+++   ..+-+-.+++..-   ..|    .....|...|++....|+++.|....-++.+..  -+
T Consensus      1628 ~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~ 1702 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LP 1702 (2382)
T ss_pred             cchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cc
Confidence            44567666655555544   3344433444332   222    456789999999999999999999988887766  46


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHcccH--HHHHHHHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----------------HDAWRELAEIYVSLQMY--KQAAFCYEELI  193 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~lg~~~~~~~~~--~~A~~~~~~al  193 (301)
                      .++...+..+...|+...|+.++++.++.+-.+                 ..+...++......+++  ++-+++|+.+.
T Consensus      1703 ~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ 1782 (2382)
T KOG0890|consen 1703 EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK 1782 (2382)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            678899999999999999999999999764222                 12334445555555654  36678899999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcC-----C----CCcHHH---HHHHHHHHhcccC
Q 022205          194 LSQPTVPLYHLAYADVLYTLG-----G----VDNILL---AKKYYASTIDLTG  234 (301)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~~-----~----~~~~~~---A~~~~~~al~~~p  234 (301)
                      ++.|.....++.+|..|.+.-     +    .+.+..   ++.+|.+++....
T Consensus      1783 ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1783 AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGN 1835 (2382)
T ss_pred             HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcc
Confidence            999977666667764433221     0    111444   6777778877654

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=3.7  Score=33.84  Aligned_cols=183  Identities=14%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHH----HhC----CChHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAA----MDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGIL  107 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~  107 (301)
                      ..-+..++.+...++..       +|+...+|...-...    +..    .-++.-++.+..+++.+|.+-.+|...-.+
T Consensus        45 keys~~aLklt~elid~-------npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~  117 (328)
T COG5536          45 KEYSVRALKLTQELIDK-------NPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWM  117 (328)
T ss_pred             hhcCHHHHHHhHHHHhh-------CHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHH
Confidence            44556677777777766       677665555332211    111    224556778899999999999999888887


Q ss_pred             HHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHHhcCCCHHHHHHH---HHHH
Q 022205          108 LEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIY  176 (301)
Q Consensus       108 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---g~~~  176 (301)
                      +...  .++..-....++.++.||.|-.+|...-.+.      .....+..-.++-..++..++.+..+|...   -...
T Consensus       118 Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~  197 (328)
T COG5536         118 LELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR  197 (328)
T ss_pred             HHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence            7765  6788888889999999999987765443333      333445555667778888999999998776   3333


Q ss_pred             HHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Q 022205          177 VSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYAS  228 (301)
Q Consensus       177 ~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~  228 (301)
                      +..|+      +++-+.+.-.++-.+|++..+|..+-.+.-.    .-.   +.+-++.+.+
T Consensus       198 ~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~---~~e~v~~L~k  256 (328)
T COG5536         198 FNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVM---IGEKVEDLGK  256 (328)
T ss_pred             HhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHH---HHHHHHHHHh
Confidence            33443      4566677777777899998877665433222    223   5566666644

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=93.46  E-value=4.3  Score=34.45  Aligned_cols=152  Identities=18%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcCC-CCH
Q 022205           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDNP-LDP  132 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~al~~~p-~~~  132 (301)
                      -++|+.+-.-+....|..+.++-+.+.+.++.                          +-.+++...+.+++.... .--
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            36788888888899999999888777766554                          235677777777776543 222


Q ss_pred             HHHHHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 022205          133 VLHKRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA  205 (301)
Q Consensus       133 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~  205 (301)
                      ...-.++.++...     -+|..-..+|.-.....| +|.+-.|.+.+..+..-...++...+.....  -.....++..
T Consensus       292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~  370 (415)
T COG4941         292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA  370 (415)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence            2333344444332     345555555555555565 4666667777777777777787777766654  2344567788


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          206 YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .|..+.++|+   .++|...|++++.+.++
T Consensus       371 RadlL~rLgr---~~eAr~aydrAi~La~~  397 (415)
T COG4941         371 RADLLARLGR---VEEARAAYDRAIALARN  397 (415)
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence            8999999999   99999999999999886

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=5  Score=34.94  Aligned_cols=166  Identities=17%  Similarity=0.106  Sum_probs=119.0

Q ss_pred             hCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           76 DCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        76 ~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ..|.+ .+++..-..++..+|+...+|...-.++..            +.-+++-+.+...++..+|+.-.+|.....++
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L  119 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL  119 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            34444 467777788888888877776554333322            22456777888999999999999999999999


Q ss_pred             HHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q 022205          143 KAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---  213 (301)
Q Consensus       143 ~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---  213 (301)
                      .+.+.  +..-+.+++++++.+|.+..+|...-.+....    ....+=+.+..+++..++.|..+|.....++-.+   
T Consensus       120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~  199 (421)
T KOG0529|consen  120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK  199 (421)
T ss_pred             HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence            88765  57889999999999999988886554444332    3356778899999999999999988876665522   


Q ss_pred             ---CC---CCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205          214 ---GG---VDNILLAKKYYASTIDLTGGKNTKALF  242 (301)
Q Consensus       214 ---~~---~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (301)
                         |+   .+....-+..-..|+-.+|+ +.-+|+
T Consensus       200 ~~~g~~~~~~~l~sEle~v~saiFTdp~-DqS~Wf  233 (421)
T KOG0529|consen  200 EADGNFMPKELLQSELEMVHSAIFTDPE-DQSCWF  233 (421)
T ss_pred             cccCccCCHHHHHHHHHHHHHHHhcCcc-ccceee
Confidence               21   11245556666778888996 555553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.29  E-value=0.43  Score=39.66  Aligned_cols=62  Identities=18%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  178 (301)
                      |..+|.+|+...|++...++.+|.++...|+.-.|+-+|-+++-...-.+.+..+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999886654458888898888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.25  E-value=0.12  Score=25.67  Aligned_cols=17  Identities=18%  Similarity=0.034  Sum_probs=6.7

Q ss_pred             HHHHHHHHcccHHHHHH
Q 022205          171 ELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       171 ~lg~~~~~~~~~~~A~~  187 (301)
                      .+|.++...|++++|..
T Consensus         6 ~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    6 ALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            33334444444443333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.25  E-value=1.5  Score=36.31  Aligned_cols=57  Identities=21%  Similarity=0.114  Sum_probs=41.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY  158 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (301)
                      ...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+++.+++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345566677777777777777777777777777777777777777766666666654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.09  E-value=5.8  Score=34.91  Aligned_cols=102  Identities=14%  Similarity=-0.018  Sum_probs=65.5

Q ss_pred             CchhHHHHHHH--HHHHHhCCChHHHHHHHHHHHHhC-----CCchhh--------HHHHHHHHHHcCCHHHHHHHHHHH
Q 022205           60 GPDVWTLYEQV--SIAAMDCQCLDVAKDCIKVLQKQF-----PESKRV--------GRLEGILLEAKGLWAEAEKAYSSL  124 (301)
Q Consensus        60 ~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~a  124 (301)
                      +|+.|..+.-+  -..+....++.+-+...+.....+     .+...+        ...+.+++.-.|+|..|++.++..
T Consensus        69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i  148 (404)
T PF10255_consen   69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI  148 (404)
T ss_pred             ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence            46777776644  344555566666555544421110     012222        334556778889999999988654


Q ss_pred             Hh--------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          125 LE--------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       125 l~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      --        ..+-....++..|.+|+.+++|.+|+..|...+-.
T Consensus       149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21        12234558899999999999999999999987753

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.06  E-value=1.5  Score=40.99  Aligned_cols=145  Identities=19%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHH------H----hCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQ------K----QFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLED----------  127 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~------~----~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------  127 (301)
                      ..|..+-+..+++.|+.+|++.-      +    .+|.. ...-...|.-+...|+++.|+..|-.+-..          
T Consensus       666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a  745 (1636)
T KOG3616|consen  666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA  745 (1636)
T ss_pred             hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            33445555567777777765432      2    23422 122233456666677777777666433110          


Q ss_pred             --------------CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          128 --------------NP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       128 --------------~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                                    +. .-...|-.++.-|...|+++-|..+|.++-.        +..--+.|-+.|+|++|.+.-.+.
T Consensus       746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~  817 (1636)
T KOG3616|consen  746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEEC  817 (1636)
T ss_pred             hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHh
Confidence                          00 0111344455666666777777776665321        222345566777777776665554


Q ss_pred             HhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205          193 ILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYY  226 (301)
Q Consensus       193 l~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~  226 (301)
                      .  .|.. ...+...+.-+-..|+   |.+|...|
T Consensus       818 ~--~~e~t~~~yiakaedldehgk---f~eaeqly  847 (1636)
T KOG3616|consen  818 H--GPEATISLYIAKAEDLDEHGK---FAEAEQLY  847 (1636)
T ss_pred             c--CchhHHHHHHHhHHhHHhhcc---hhhhhhee
Confidence            3  2433 3345555666666676   65555544

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=93.04  E-value=3.3  Score=31.95  Aligned_cols=148  Identities=12%  Similarity=0.047  Sum_probs=89.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-----G  146 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g  146 (301)
                      ..+|++|..+|..-.+.+ ..+...+-+|..++.     .++...|+..+..+..  .+.+.+...+|.++..-     +
T Consensus        48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~  124 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence            367888888877666543 345566667766553     2578889998888766  45677777777776542     3


Q ss_pred             C--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------------------ccHHHHHHHHHHHHhhCCCCH
Q 022205          147 N--FPTAIEWLNKYLETFMADHDAWRELAEIYVSL------------------------QMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       147 ~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~------------------------~~~~~A~~~~~~al~~~p~~~  200 (301)
                      +  ..+|..++.++..++  +..+.+.|...|+.-                        .+.+.|..+--+|.++  +++
T Consensus       125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~  200 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIP  200 (248)
T ss_pred             CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CCh
Confidence            3  668899999887765  455566666555443                        3445555555555443  344


Q ss_pred             HHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhcc
Q 022205          201 LYHLAYADVLYTLGG--VDNILLAKKYYASTIDL  232 (301)
Q Consensus       201 ~~~~~la~~~~~~~~--~~~~~~A~~~~~~al~~  232 (301)
                      .+..++...| .+|+  .++.++|..+-.+|.++
T Consensus       201 ~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  201 QACANVSRMY-KLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHhhHHHHH-HccCCCCccHHHHHHHHHHHHHH
Confidence            4555554443 3333  23455666655555554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.90  E-value=1.3  Score=28.78  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=21.7

Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHcccHHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRE---LAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---lg~~~~~~~~~~~A~~~~  189 (301)
                      ++...+..+|+..++++++..++.+.-|..   +..+|...|+|.+++.+.
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555554444333322   233344445555554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.76  E-value=3.1  Score=35.26  Aligned_cols=119  Identities=15%  Similarity=-0.071  Sum_probs=64.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------------------
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------------------  165 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------  165 (301)
                      -....+..+..+-++....+++.+|....++..++.-  ..--..+|.+.|+++++.-..+                   
T Consensus       191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r  268 (556)
T KOG3807|consen  191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR  268 (556)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence            3344455666667777777778888777776665542  2223556777777776642110                   


Q ss_pred             ----HH--HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          166 ----HD--AWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       166 ----~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                          ..  .-..|++|-.++|+..+|++.++...+-.|-.  ..++-++-..+..+.-   |......+-+
T Consensus       269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA---YADvqavLak  336 (556)
T KOG3807|consen  269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA---YADVQAVLAK  336 (556)
T ss_pred             cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence                00  11245666666666666666666655554422  2344455555555554   4444444433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.45  E-value=0.9  Score=29.57  Aligned_cols=59  Identities=7%  Similarity=-0.094  Sum_probs=44.9

Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH---LAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      .-|.-++..++.++|+..++++++..++.+.-+   ..+..+|...|+   +.+++++-.+-+.+
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            345455677889999999999999888776544   445567888888   99998887766554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.10  E-value=0.73  Score=25.05  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      .+..+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.85  E-value=0.52  Score=24.28  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=9.3

Q ss_pred             hHHHHHHHHHHHhcCCCHHHHH
Q 022205          149 PTAIEWLNKYLETFMADHDAWR  170 (301)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~  170 (301)
                      +.+..+|++++...|.++..|.
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~   25 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWL   25 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHH
Confidence            3344444444444444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.72  E-value=0.31  Score=24.18  Aligned_cols=25  Identities=24%  Similarity=0.143  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      .+...+|.++...|+   +++|...+++
T Consensus         2 ~a~~~la~~~~~~G~---~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGD---PDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHhC
Confidence            467889999999999   9999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.65  E-value=0.96  Score=37.41  Aligned_cols=58  Identities=19%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      ...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+   --.|.++|++.-
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHH
Confidence            3456777788888889988888888888888888888888888888   777777776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.59  E-value=2.8  Score=34.30  Aligned_cols=80  Identities=21%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             ChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC
Q 022205          147 NFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLG  214 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~  214 (301)
                      .....+.+++++.+.+...      ......+|.-|+..|+|++|+.+|+.+.......      ..+...+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            3445667777777655422      2345578899999999999999999886543322      345667788888888


Q ss_pred             CCCcHHHHHHHHHHH
Q 022205          215 GVDNILLAKKYYAST  229 (301)
Q Consensus       215 ~~~~~~~A~~~~~~a  229 (301)
                      +   .+..+...-+.
T Consensus       233 ~---~~~~l~~~leL  244 (247)
T PF11817_consen  233 D---VEDYLTTSLEL  244 (247)
T ss_pred             C---HHHHHHHHHHH
Confidence            8   77666654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=91.36  E-value=5.5  Score=30.78  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=95.2

Q ss_pred             CchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHhcCCCHHHH
Q 022205           96 ESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAW  169 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~  169 (301)
                      ..|....++|..+.. +.+|++|..+|..-...+. .+...+.+|..++.     .++...|+..+..+..  -+++.+.
T Consensus        32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC  108 (248)
T KOG4014|consen   32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC  108 (248)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence            567888889988765 5789999999988766553 34555666665543     4568889999998876  4578888


Q ss_pred             HHHHHHHHHc-----cc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCC----------CcHHH
Q 022205          170 RELAEIYVSL-----QM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTL-----------GGV----------DNILL  221 (301)
Q Consensus       170 ~~lg~~~~~~-----~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~----------~~~~~  221 (301)
                      ..+|.++..-     ++  .++|..++.++..++  +..+.+.|...|..-           |..          .+.+.
T Consensus       109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdk  186 (248)
T KOG4014|consen  109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDK  186 (248)
T ss_pred             hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHH
Confidence            8888887643     23  679999999998664  556666666555543           111          34788


Q ss_pred             HHHHHHHHhccc
Q 022205          222 AKKYYASTIDLT  233 (301)
Q Consensus       222 A~~~~~~al~~~  233 (301)
                      |..+-.+|.+++
T Consensus       187 a~qfa~kACel~  198 (248)
T KOG4014|consen  187 ALQFAIKACELD  198 (248)
T ss_pred             HHHHHHHHHhcC
Confidence            888888888875

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.34  E-value=8.4  Score=32.83  Aligned_cols=171  Identities=15%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHH--HH
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPV--LH  135 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~  135 (301)
                      .++..+++.++|.+|+.....++....      .-..++..-...|....+..+|...+..+-..     .|....  .=
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD  212 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            457788999999999998887776432      12345566677888888888888777665431     122222  22


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcC---CCHHHHH---HHHHHHHHcccHH--HHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHDAWR---ELAEIYVSLQMYK--QAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~---~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ..-|.++..-.+|..|-.+|-++++-+.   .+..+..   .+-.|-...+..+  .++-.-+.+++....+..+....+
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA  292 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA  292 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence            2346666777899999999999988542   1233332   2223333344444  455555667777777888888888


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (301)
                      .++.+.. ..+|+.|+..|..-+..+|  -++.++
T Consensus       293 eA~~nRS-LkdF~~AL~~yk~eL~~D~--ivr~Hl  324 (411)
T KOG1463|consen  293 EAFGNRS-LKDFEKALADYKKELAEDP--IVRSHL  324 (411)
T ss_pred             HHhcCCc-HHHHHHHHHHhHHHHhcCh--HHHHHH
Confidence            8876442 2339999999999998888  444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.05  E-value=0.48  Score=26.10  Aligned_cols=31  Identities=6%  Similarity=-0.003  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      .++..+|.+-...++   |++|+..|++++++..
T Consensus         2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence            467889999999999   9999999999998743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=91.01  E-value=5.8  Score=34.79  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=45.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchh--hHH--HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--VGR--LEGILLEAKGLWAEAEKAYSSLLEDN  128 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~--~~a~~~~~~~~~~~A~~~~~~al~~~  128 (301)
                      ..+..++..++|..|..++..+...-|....  .+.  ..|.-+...-++.+|.+.++..+...
T Consensus       136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~  199 (379)
T PF09670_consen  136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD  199 (379)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            4577888999999999999999987554443  222  33445566789999999999988753

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.96  E-value=0.76  Score=23.60  Aligned_cols=30  Identities=23%  Similarity=0.240  Sum_probs=21.5

Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      |+++.|...|++++...|.++.+|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456777778888887777777777766543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.73  E-value=8.4  Score=31.79  Aligned_cols=52  Identities=13%  Similarity=0.015  Sum_probs=37.5

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLE  126 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~  126 (301)
                      +...+.++|+..|.++++..|...    .++-..-.+.+++++|++-+..|.+.+.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            344578888888888888877543    3445566678888888888887777654

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.21  E-value=6.5  Score=32.47  Aligned_cols=164  Identities=13%  Similarity=0.033  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChhH
Q 022205           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT  150 (301)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~  150 (301)
                      ..|++.-...+..+|..-.+|...-.+...        ..-++.-+.++..++..+|.+-.+|...-.++...  .++..
T Consensus        49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r  128 (328)
T COG5536          49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR  128 (328)
T ss_pred             HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence            357777777777778776676665555444        12345667888999999999999999888777765  66788


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH------HHcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHcCCCC---c
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N  218 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~---~  218 (301)
                      -..+.++.++.+|.+...|...-.+.      ..-..+....++-..++..++.|..+|...   -...+..|+..   -
T Consensus       129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~  208 (328)
T COG5536         129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY  208 (328)
T ss_pred             hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence            88889999999999987776543333      223344455666667788899999888776   33334455521   1


Q ss_pred             HHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205          219 ILLAKKYYASTIDLTGGKNTKALFGIC  245 (301)
Q Consensus       219 ~~~A~~~~~~al~~~p~~~~~~~~~l~  245 (301)
                      +++-+.+.-.++-.+|+ +..+|..+.
T Consensus       209 l~~eL~~i~~~if~~p~-~~S~w~y~r  234 (328)
T COG5536         209 LEKELEYIFDKIFTDPD-NQSVWGYLR  234 (328)
T ss_pred             HHHHHHHHHhhhhcCcc-ccchhhHHH
Confidence            45667777777778896 666665443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.69  E-value=0.84  Score=39.97  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      ...+..++.-.|+|..|++.++..-        ...+-+..+++.+|-+|+.+++|.+|+++|..++
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678888999999999987531        1112335678899999999999999999999987

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.60  E-value=12  Score=35.10  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=22.2

Q ss_pred             cCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      -|.+...+-.+|..+...|.-++|+.+|-+
T Consensus       848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            466777777788888888888888777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.50  E-value=4.7  Score=38.01  Aligned_cols=120  Identities=15%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSL  179 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~  179 (301)
                      +-.++.-|...|+|+-|.+.|.++-        .+..-..+|.+.|+|.+|.++-.+...  |.. ...|...+.-+-..
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh  837 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH  837 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh
Confidence            4456777888899999988887652        223445677788888888777665432  222 22233333333333


Q ss_pred             -------------ccHHHHHHHHHHHH----------hhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          180 -------------QMYKQAAFCYEELI----------LSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       180 -------------~~~~~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                                   |..+.|+.+|.+.-          +..|+. ...+..+|.-+...|+   .+.|..+|.++-...
T Consensus       838 gkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~---lkaae~~flea~d~k  912 (1636)
T KOG3616|consen  838 GKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD---LKAAEEHFLEAGDFK  912 (1636)
T ss_pred             cchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC---hhHHHHHHHhhhhHH
Confidence                         44556666665431          112322 3567888988999999   888888887765543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.45  E-value=16  Score=33.08  Aligned_cols=135  Identities=15%  Similarity=-0.034  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------------  127 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------  127 (301)
                      -..+..++.++..+ ..+.-..+++++.+.+-++...-..++..|.. ++...+..+|.+++-.                
T Consensus        99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK  176 (711)
T COG1747          99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK  176 (711)
T ss_pred             HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence            44566677777777 34556677777777776777667777877777 7778888888777641                


Q ss_pred             ----CCCCHHHH--------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----
Q 022205          128 ----NPLDPVLH--------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-----  178 (301)
Q Consensus       128 ----~p~~~~~~--------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-----  178 (301)
                          -|++.+..                    ...-.-|....++++|+..+.-.++.+..+..+.-++-..+..     
T Consensus       177 L~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~  256 (711)
T COG1747         177 LPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGH  256 (711)
T ss_pred             HHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccc
Confidence                13332211                    1122334456789999999999999998887777666555544     


Q ss_pred             ---------------cccHHHHHHHHHHHHhhCCCCH
Q 022205          179 ---------------LQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       179 ---------------~~~~~~A~~~~~~al~~~p~~~  200 (301)
                                     -.++..|+.-|++.+..+..+.
T Consensus       257 ~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF  293 (711)
T COG1747         257 SQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF  293 (711)
T ss_pred             hhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence                           4567788888888887766553

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.63  E-value=12  Score=30.46  Aligned_cols=162  Identities=18%  Similarity=0.150  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAK  143 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~  143 (301)
                      +..+|...-+.|+|++++.++++++..+|+ +..=..+++.+|-. .|..-.+...+........... .....+..-|.
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            345677888899999999999999998763 23333444444422 2334444444444333222210 11111111111


Q ss_pred             HcCChhHHHHHHHHHHH-------hcCCCHH----HHHHHHHHHHHc-----c-----cHHHHHHHHHHHHh-----hCC
Q 022205          144 AQGNFPTAIEWLNKYLE-------TFMADHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----SQP  197 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~-------~~p~~~~----~~~~lg~~~~~~-----~-----~~~~A~~~~~~al~-----~~p  197 (301)
                      .. =.++-...+..++.       -...++.    .+-..|+.|.-.     |     -.+.|..+|++|+.     +.|
T Consensus        84 ~k-ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~  162 (236)
T PF00244_consen   84 KK-IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP  162 (236)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence            10 01122222333322       2222322    122345444322     2     24688888988884     467


Q ss_pred             CCHH---HHHHHHHHHH-HcCCCCcHHHHHHHHHHHhcc
Q 022205          198 TVPL---YHLAYADVLY-TLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       198 ~~~~---~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~  232 (301)
                      .+|.   ...+++..++ .+|+   .++|+...++++..
T Consensus       163 ~~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd~  198 (236)
T PF00244_consen  163 THPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFDE  198 (236)
T ss_dssp             TSHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence            7775   3445555554 4788   88888888877754

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=87.72  E-value=15  Score=30.60  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      .+.|...+.+++.++|....+...+-.+--..|.
T Consensus       115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge  148 (277)
T PF13226_consen  115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE  148 (277)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence            3677777888888888877777666666555555

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.10  E-value=16  Score=30.22  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----CCchhhHHHHHHHHHHcCCHH-HHHHHHHHHHh------cCCC
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----PESKRVGRLEGILLEAKGLWA-EAEKAYSSLLE------DNPL  130 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~------~~p~  130 (301)
                      ..++++.-+..+++.|++..|.++..-.++..     |.+......+..+......-+ +-..+.+++++      ..-.
T Consensus         9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G   88 (260)
T PF04190_consen    9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG   88 (260)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred             HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence            34455555666667777766665554444421     222223233444444332211 12222223322      2234


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHH----------------HHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKY----------------LETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al  193 (301)
                      ++..+..+|..+.+.|++.+|..+|-..                ..-+|...+.+...|.+ |...++...|...+..-+
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~  168 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT  168 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            6778888888888888888777665321                12234555555544443 455677777777665555


Q ss_pred             hh----CC-----------CCHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          194 LS----QP-----------TVPLYHL-AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       194 ~~----~p-----------~~~~~~~-~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      +.    +|           ..|...+ .+-......++...|..-.+.|+..++.+|. ....+-.++..|..+.
T Consensus       169 ~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~-~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  169 SKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPS-FKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHH-THHHHHHHHHHHH---
T ss_pred             HHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHH-HHHHHHHHHHHHCCCC
Confidence            44    22           2222111 1111122233333355556666666666663 5555555665555543

; PDB: 3LKU_E 2WPV_G.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.04  E-value=10  Score=35.86  Aligned_cols=168  Identities=16%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-CCCH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEA---KGLWAEAEKAYSSLLEDN-PLDP  132 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~-p~~~  132 (301)
                      .+.+..++...|.+..+|+.-+.+.+.+-+. |+.      ..+.+..+..+-+   -|+-++|+...-.+++.. |-.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            4456667777888889999888887776553 532      2333444444433   378888998888777744 5556


Q ss_pred             HHHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCC-----
Q 022205          133 VLHKRRVAIAKA---------QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQP-----  197 (301)
Q Consensus       133 ~~~~~l~~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p-----  197 (301)
                      +.+...|.+|..         .+..+.|+.+|+++.+..|.. .+-.+++.++...|. |+...+.-+-+.+++.     
T Consensus       279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK  357 (1226)
T KOG4279|consen  279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK  357 (1226)
T ss_pred             ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence            677777777754         355678999999999998864 233455655555543 4444444333333321     


Q ss_pred             CC---HHHHHHHHH---HHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          198 TV---PLYHLAYAD---VLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       198 ~~---~~~~~~la~---~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ..   ...|+-.|.   +-...++   +.+|+..-+..+++.|.
T Consensus       358 G~leklq~YWdV~~y~~asVLAnd---~~kaiqAae~mfKLk~P  398 (1226)
T KOG4279|consen  358 GALEKLQEYWDVATYFEASVLAND---YQKAIQAAEMMFKLKPP  398 (1226)
T ss_pred             chHHHHHHHHhHHHhhhhhhhccC---HHHHHHHHHHHhccCCc
Confidence            11   111222221   1223456   99999999999999885

>PF12854 PPR_1: PPR repeat

Probab=87.02  E-value=1.8  Score=23.03  Aligned_cols=26  Identities=15%  Similarity=0.093  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHH
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNK  157 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (301)
                      ...|..+...+.+.|+.++|.++|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34455555566666666666665543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.89  E-value=6.8  Score=32.06  Aligned_cols=81  Identities=12%  Similarity=0.021  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcc
Q 022205          113 LWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQ  180 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~  180 (301)
                      .....++.+.+++.....      -..+...+|..|+..|++++|+.+|+.+.......      ..+...+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            344556777777653321      23366689999999999999999999997665433      345567888888899


Q ss_pred             cHHHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELI  193 (301)
Q Consensus       181 ~~~~A~~~~~~al  193 (301)
                      +.+..+.+.-+.+
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9888877655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=86.89  E-value=9.6  Score=27.52  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             HHHHHHHhcCC---CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcccHHHHH
Q 022205          119 KAYSSLLEDNP---LDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHD-----AWRELAEIYVSLQMYKQAA  186 (301)
Q Consensus       119 ~~~~~al~~~p---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~-----~~~~lg~~~~~~~~~~~A~  186 (301)
                      ..|+..+....   +...+|.....-...    .|....-..+++++++...+++.     -+..+-..|...-.  .+.
T Consensus         6 ~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~   83 (126)
T PF08311_consen    6 QEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPR   83 (126)
T ss_dssp             HHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHH
T ss_pred             HHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHH
Confidence            34444444322   334455444433322    24555666778888777655421     12222222222222  777


Q ss_pred             HHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          187 FCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       187 ~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      .+|..+..  +.-..+..|...|..+...|+   +++|.+.|+.+|
T Consensus        84 ~if~~l~~~~IG~~~A~fY~~wA~~le~~~~---~~~A~~I~~~Gi  126 (126)
T PF08311_consen   84 EIFKFLYSKGIGTKLALFYEEWAEFLEKRGN---FKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhhC
Confidence            77777664  445668888889999999999   999999988765

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF12854 PPR_1: PPR repeat

Probab=86.75  E-value=2.1  Score=22.74  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      |..+|..+-..|.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            456677777888888888888877764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=86.53  E-value=1.5  Score=37.33  Aligned_cols=70  Identities=14%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      +++.+-...+.+..|+.....+++.++....+++..+..+....++++|+..++.+....|.+..+...+
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            3444445555555555555555555555555555555555555555555555555555555555443333

>PF13041 PPR_2: PPR repeat family

Probab=86.16  E-value=4.8  Score=23.34  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +|..+-..+.+.|++++|.+.|++..+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            344444444555555555555554443

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=86.16  E-value=5.7  Score=34.61  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      +|+..++.++..+|.+......+..+|...|-.+.|...|.
T Consensus       201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~  241 (365)
T PF09797_consen  201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE  241 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444444444455555544445555555555554444443

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.60  E-value=2.1  Score=24.45  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=16.0

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +.||.+|...|+.+.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3566666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.41  E-value=15  Score=33.40  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHH
Q 022205           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      ....+.+.......|+.+......+.++...|+.+.|+..++..+.  +..    ...++.+|.++..+.+|..|-..+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4556666677778899999999999999999998888999988877  221    2256678888888899999999999


Q ss_pred             HHHHhcCCCHHHHHHHH
Q 022205          157 KYLETFMADHDAWRELA  173 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg  173 (301)
                      .....+.-+...|..++
T Consensus       328 ~L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHHhhhhhhHHHHHHHH
Confidence            88887765555555555

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.36  E-value=25  Score=30.90  Aligned_cols=60  Identities=20%  Similarity=0.093  Sum_probs=43.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHH--HHHHcCChhHHHHHHHHHHHh
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--LHKRRVA--IAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~--~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      ...+..++..++|..|...+......-|....  .+..++.  .+...-++.+|...++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34566778889999999999999986344333  3444433  445678899999999988765

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=85.14  E-value=26  Score=30.80  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=87.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC-C--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC-HHHHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNP-L--------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD-HDAWREL  172 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p-~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~l  172 (301)
                      +..++++.+|...-+..+.... .        ....|+.+..+|...|+...-...+...+..     +... ....+.|
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L  215 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL  215 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence            3446889998888777665211 1        1336777888888888877666666655543     1111 3344556


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQ--P--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~--p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      -..|...+.|+.|-+...++.--.  .  ......+.+|.+..-.++   |..|.+++.+|+...|.
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence            777888899999988877765211  1  224567788999999999   99999999999999995

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=84.95  E-value=38  Score=32.59  Aligned_cols=120  Identities=10%  Similarity=0.043  Sum_probs=74.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cccHHHHHHH
Q 022205          112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFC  188 (301)
Q Consensus       112 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~  188 (301)
                      +..++-+..++.-+..++.+...+..|..++...|++++-...-....++.|.++..|.....-...   .+.-..+...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            3444555666666667777777777777778888888777777777777778777777765544332   2455666677


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhcc
Q 022205          189 YEELILSQPTVPLYHLAYADVLYTLGG----VDNILLAKKYYASTIDL  232 (301)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~  232 (301)
                      |++++. +-.++..|...+.....-++    .++++.-...|.+++..
T Consensus       173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s  219 (881)
T KOG0128|consen  173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS  219 (881)
T ss_pred             HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence            777774 23344444444444333322    12267777777777654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.86  E-value=17  Score=28.57  Aligned_cols=71  Identities=13%  Similarity=-0.003  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          149 PTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       149 ~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      ++|...|-++-.. .-+++...+.||..|. ..+.++|+..+-+++++.+.    ++.++..++.+++..|+   ++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~---~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN---YEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc---hhhhh
Confidence            4555555443221 1245778888887776 56778888888888877543    47888888888888888   77764

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.44  E-value=13  Score=32.46  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C------C
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--L------D  131 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~------~  131 (301)
                      ....+..++..|...|+++.|+++|.++..-..   .....+...-.+....|+|..-..+-.++...-.  .      .
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            455677888888888888888888888554332   2233455555666777888777777766655310  0      0


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKY  158 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (301)
                      +.+...-|.+....+++..|..+|-.+
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            113344455556666777777776554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=84.39  E-value=23  Score=33.12  Aligned_cols=112  Identities=15%  Similarity=-0.005  Sum_probs=57.1

Q ss_pred             HHHHHHcCCHHHHHHHH----------HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205          105 GILLEAKGLWAEAEKAY----------SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~----------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      |..+...|+.++|+...          +-+-+.+..+.+.+..++..+.....+.-|.+.|.+.-.        .-.+..
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq  781 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ  781 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence            44555566666665532          111122333334444444444445555555555544211        112345


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      ++...++|++|....++--+.-   +.+++..|.-+....+   |++|.+.|.+|=
T Consensus       782 lHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkAG  831 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKAG  831 (1081)
T ss_pred             heeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHhc
Confidence            5666788888876655433332   3355556666666666   666666665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.21  E-value=14  Score=35.34  Aligned_cols=52  Identities=21%  Similarity=0.145  Sum_probs=28.2

Q ss_pred             HHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE  126 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  126 (301)
                      .++..-|+-|+.+.+.--. ++ .-..++...|..++..|++++|...|-+.+.
T Consensus       344 L~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~  396 (933)
T KOG2114|consen  344 LFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG  396 (933)
T ss_pred             HHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence            3444555556555433221 12 2234455566667777777777777766654

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=84.18  E-value=20  Score=30.44  Aligned_cols=99  Identities=12%  Similarity=-0.066  Sum_probs=69.6

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HD  167 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~  167 (301)
                      -..++..+|..|.+.|+-+.|.+.+.+..+..-.      -.-...++|..|....-..+.+...+..++...+-   -.
T Consensus       103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR  182 (393)
T KOG0687|consen  103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR  182 (393)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence            4578899999999999999999999988774422      22245567777766655566666666666554321   11


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .-..-|..++...+|.+|-..|-.++..
T Consensus       183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  183 LKVYQGLYCMSVRNFKEAADLFLDSVST  210 (393)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence            2334577788889999999999888754

>PF13041 PPR_2: PPR repeat family

Probab=83.83  E-value=6.4  Score=22.79  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      ...|..+...+.+.|++++|.++|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            345566666666666666666666666654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.57  E-value=21  Score=28.58  Aligned_cols=58  Identities=16%  Similarity=0.069  Sum_probs=33.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (301)
                      +...+...+|+...+.-++..|.+......+..++.-.|+|.+|...++-+-++.|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3344555555555555555556555555555555555666666665555555555544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.46  E-value=7.1  Score=31.15  Aligned_cols=61  Identities=10%  Similarity=0.006  Sum_probs=52.7

Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      .-+.+.+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|.+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3456778889999999999999999988888888999999999999999988888888764

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.31  E-value=3.2  Score=23.72  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=9.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 022205          104 EGILLEAKGLWAEAEKAYSSLL  125 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al  125 (301)
                      +|..|..+|+.+.|...++.++
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHH
Confidence            3444444444444444444444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=82.78  E-value=15  Score=34.92  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           77 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      -|+-+.|+...-.+++.. |-.+..+.+.|++|-.+         +..+.|+++|+++.+..|.... -.+++.++...|
T Consensus       256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG  334 (1226)
T KOG4279|consen  256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG  334 (1226)
T ss_pred             CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence            478889998877777655 56777888888887554         5667899999999999986433 345666666665


Q ss_pred             C-hhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHH---HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          147 N-FPTAIEWLNKYLETFM-----A---DHDAWRELAEIY---VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       147 ~-~~~A~~~~~~~l~~~p-----~---~~~~~~~lg~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      + ++...+.-.-...++.     .   ....|...|..+   .-.+++.+|+...+..+++.|-.+.....++.+..
T Consensus       335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l  411 (1226)
T KOG4279|consen  335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL  411 (1226)
T ss_pred             hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence            4 2322222222222221     0   011122222222   23478899999999999998876665555554443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.74  E-value=5.6  Score=29.37  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (301)
                      ...+...+..|++.-|..+++.++..+|++..+..+++.++.+.|
T Consensus        74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            344566667777777777777777777777777777776666544

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.96  E-value=8.5  Score=28.44  Aligned_cols=50  Identities=26%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      .+.....+...+..|++.-|......++..+|++..+....+.++..+|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666666666666666666666666665554

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=81.61  E-value=4.3  Score=32.66  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHc------CCCCcHHHHHHHHHHHhcccCC
Q 022205          202 YHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       202 ~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .+...|..+...      ++.++...|+.++++|+.++|.
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k  210 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK  210 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence            455566666432      2333489999999999999985

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=81.10  E-value=30  Score=28.60  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=76.2

Q ss_pred             hCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCChh-
Q 022205           76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHKRRVAIAKAQGNFP-  149 (301)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~-  149 (301)
                      ..+++++|++++.....              .+.+.|++.-|.+...-.++     ..+.+.....+++.+....+.-+ 
T Consensus         2 ~~kky~eAidLL~~Ga~--------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p   67 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGAL--------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP   67 (260)
T ss_dssp             HTT-HHHHHHHHHHHHH--------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred             ccccHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence            46778888887755443              33444444444333322222     23344444556666666654322 


Q ss_pred             HHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH----------------HhhCCCCHHHHHHHH
Q 022205          150 TAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEEL----------------ILSQPTVPLYHLAYA  207 (301)
Q Consensus       150 ~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la  207 (301)
                      +-..+.+++++..      -.+|..+..+|..+.+.|++.+|..+|-..                .+-.|.....+...|
T Consensus        68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra  147 (260)
T PF04190_consen   68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA  147 (260)
T ss_dssp             THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            3444555555543      145889999999999999999888776321                122355555554444


Q ss_pred             HH-HHHcCCCCcHHHHHHHHHHHhcc
Q 022205          208 DV-LYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       208 ~~-~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      .+ |...++   ...|...+..-++.
T Consensus       148 VL~yL~l~n---~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  148 VLQYLCLGN---LRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHTTB---HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---HHHHHHHHHHHHHH
Confidence            44 556688   88888877666655

; PDB: 3LKU_E 2WPV_G.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=80.27  E-value=3.4  Score=20.73  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=10.7

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHH
Q 022205          170 RELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ..+-..|.+.|++++|...|++.
T Consensus         4 ~~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    4 NSLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             HHHHHHHHccchHHHHHHHHHHH
Confidence            33444444444555554444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-04

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 2/163 (1%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L  KG  + A + Y + ++ +     ++ +  +    +GNFP AI+++ K +     
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           D   + EL + Y   + Y +A   + +++  +P + + +L  A             LAK 
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

Query: 225 YY--ASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKES 265
           YY     +   GG   K          A          +   +
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 6/131 (4%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L     +AEA + ++ L       P ++ RR         +  A + +  Y     A
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 165 D---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221
                  +    +I +       A   Y+  +    T    +       Y  G       
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL--- 126

Query: 222 AKKYYASTIDL 232
           A +Y    I  
Sbjct: 127 AIQYMEKQIRP 137

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 6/156 (3%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA---YSSLLEDNPLDPVLHK 136
              A +    L+ +   S  +     +       +  A+K    Y S +          +
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196
               I   +G    AI+     ++      D + ++   + +   +  A    E+ I   
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
            T P          Y        + A   +   ++L
Sbjct: 139 TTDPKVFYELGQAYYYNK---EYVKADSSFVKVLEL 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 81  DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140
              + C+++  +Q P++  V  L   +         +    +  ++ NPL    +     
Sbjct: 17  AAERHCMQLW-RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200
           + K +G    AIE     L       D +  LA   V+    + A   Y   +   P + 
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
                  ++L  LG ++    AK  Y   I+ 
Sbjct: 136 CVRSDLGNLLKALGRLEE---AKACYLKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G +  AE+    L    P +  +     +I         +  +    ++    
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +A+  L  +Y      ++A   Y   +  +P     ++  A  L   G ++    A +
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQ 122

Query: 225 YYASTIDL 232
            Y S +  
Sbjct: 123 AYVSALQY 130

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 29/110 (26%), Positives = 41/110 (37%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L+ KG  AEAE  Y++ L   P           I + QGN   A+    K LE F  
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A   LA +       ++A   Y+E I   PT    +    + L  + 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L A G    A +AY S L+ NP    +      + KA G    A     K +ET   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              AW  L  ++ +      A   +E+ +   P     ++   +VL      D    A  
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR---AVA 224

Query: 225 YYASTIDL 232
            Y   + L
Sbjct: 225 AYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 28/110 (25%), Positives = 41/110 (37%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G LL+A G   EA+  Y   +E  P   V       +  AQG    AI    K +     
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+  L  +    +++ +A   Y   +   P   + H   A V Y  G
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 25/110 (22%), Positives = 40/110 (36%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L+   ++  A  AY   L  +P   V+H     +   QG    AI+   + +E    
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+  LA          +A  CY   +   PT        A++    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 18/103 (17%), Positives = 32/103 (31%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                 KG   EAE  +  L   +  +        AI + +  F  A +           
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           D+       +  + L+   +A  C+E +I       L   A +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
           +G    A  +          + D    LA IY   + ++QAA  Y               
Sbjct: 49  KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108

Query: 205 AYADVLYTLGGVDNILLAKKYYASTIDL 232
                   L      L AK+ +   I  
Sbjct: 109 HTGQCQLRLK---APLKAKECFELVIQH 133

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+          AE+ +S  L   P DP +      +A   G + TA +W    LE   A
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 165 D---------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215
                           L  +   L+ Y +A   + + ++  P     + A   +   +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG- 284

Query: 216 VDNILLAKKYYASTIDL 232
             N   A  Y+ + + L
Sbjct: 285 --NFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175
            +E      ++    +  +            +F    +  +  +E               
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY--ASTID 231
            V L    +  +   +L+   P+ P+   A       +G  +    A++Y   A+T++
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNE--HARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 4/129 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                    +    K  S ++E +P         +                +K ++ + +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 165 DHDAWRELAEIYVSL-QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
           +  +W  +   Y+ +    + A     +    + T     +AY          D    A 
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ---AM 145

Query: 224 KYYASTIDL 232
             Y +   L
Sbjct: 146 AAYFTAAQL 154

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIA--------KAQGNFPTAIEWL 155
           G++    G W  AEK +   LE    +   +   +            +    +  A+++ 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215
            + L     +   +  +  I+  +  ++ A   +   +  +             +    G
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 216 VD 217
             
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 39/215 (18%)

Query: 53  PKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112
           P+    L  ++  +   ++          +      V+ ++ P       +    L    
Sbjct: 12  PESVDGLQENLDVVV-SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70

Query: 113 LWAEAEKAYSSLLEDNPLDPVLH------------KRRVAIA------------------ 142
              E       L++  P +PV              K   A                    
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130

Query: 143 -----KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
                  +     A+       +     H     +   Y      K A   + + +   P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             P        V +  G       A+K++   ++ 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKT---AEKWFLDALEK 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 4e-10
 Identities = 48/338 (14%), Positives = 88/338 (26%), Gaps = 112/338 (33%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKV--LRHGLSILNDPKKRSA 58
           M+T+    Q +RL N              +  K  V R      LR  L  L   K    
Sbjct: 107 MMTRMYIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALLELRPAKN--- 152

Query: 59  LGPDVWTLYEQVSIAAMD-C--QCL--DVAKDCIKVLQKQFP------ESKRVGRLEGIL 107
                      V I  +       +  DV       +Q +          K     E +L
Sbjct: 153 -----------VLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH- 166
              + L  + +  ++S  + +                  N    I  +   L   +    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSS-----------------NIKLRIHSIQAELRRLLKSKP 242

Query: 167 ---------DAW-RELAEIYVSLQMYKQAAF---CYEELILSQPTVPLYHLAYADVLYTL 213
                    +    +              AF   C + L+ ++         +  V    
Sbjct: 243 YENCLLVLLNVQNAKAWN-----------AFNLSC-KILLTTR---------FKQV---- 277

Query: 214 GGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSSAIAQLTKGRNKEDKESPELQS 270
              D +  A   + S    +        K+L    L       L     +    +P   S
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDL---PREVLTTNPRRLS 331

Query: 271 LAAAALEKD------YKQRAPAKLL-LLTSALKSLKTS 301
           + A ++         +K     KL  ++ S+L  L+ +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 44/288 (15%), Positives = 81/288 (28%), Gaps = 95/288 (32%)

Query: 12  RLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---RSAL--------- 59
           R +   D        ++ L        PD+V    L  L+   +   R  L         
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 60  -------GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVL----QKQ-------FPESKRVG 101
                  G   W  ++ V+   +      + +  + VL     ++       FP S  + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI- 387

Query: 102 RLEGILLEAKGLWAEAEK----------AYSSLLEDNP-----------LD--------P 132
               ILL    +W +  K             SL+E  P           L+         
Sbjct: 388 --PTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 133 VLHKR---RVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMY 182
            LH+       I K   +      +L++Y  + +  H       +       +++  +  
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230
           +Q                + H + A      G + N L   K+Y   I
Sbjct: 504 EQK---------------IRHDSTA--WNASGSILNTLQQLKFYKPYI 534

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 3/115 (2%)

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
                      + +   P D V            G+       + + L       +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
           L  +  + Q + +AA   ++   + P  P   L     L   G       A   Y
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG---QAEAAAAAY 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 17/115 (14%), Positives = 24/115 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G     E A    L  +P  P    R   +   Q     A   L +  +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
                  L          + AA  Y       P  P       +    L     +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 15/170 (8%), Positives = 42/170 (24%)

Query: 58  ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117
              P  +  +  ++ A +        +  ++      P         G +   +   AEA
Sbjct: 17  RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEA 76

Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177
                   +  P  P +        +  G    A     +  +    +     +L     
Sbjct: 77  AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136

Query: 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227
            L  ++       ++  +          +A +       + +  A+    
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQ 186

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 10/135 (7%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+     G    A +   S       DP+L      +A  + +  TAI      L     
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 165 -------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
                      W  L   Y  L+MY  A     + +L        H A A V        
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK--- 564

Query: 218 NILLAKKYYASTIDL 232
              LA  +   ++ +
Sbjct: 565 IPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 4/186 (2%)

Query: 47  LSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI 106
           +  LN           + +LY            L  A+D +  +     +S  +   +  
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSDLLLCKAD 313

Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
            L  +  + +     + +LE +P +  ++   +A     G         N  ++      
Sbjct: 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373

Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
             W  +   Y+ +    +A   + +     P      + +A      G  D    A   Y
Sbjct: 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ---AISAY 430

Query: 227 ASTIDL 232
            +   L
Sbjct: 431 TTAARL 436

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 3/128 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           GI        +EA + +S     +P               +G    AI         F  
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
            H  +  L   ++ L     A    +         PL       V +      ++  A  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS---DMQTAIN 496

Query: 225 YYASTIDL 232
           ++ + + L
Sbjct: 497 HFQNALLL 504

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 1/111 (0%)

Query: 105 GILLEAKGLWAEAEK-AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
             LL A   W    K  YS+  +++               +  +     E     +    
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              D     A+       +        +++   P     +  +   L+  G
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 105 GILLEAKGLWAEAEKAY-------SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157
           G++   K     A   +            +               +    +  AI+ LN+
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            L     D +    +A +Y+  ++   A     E +   P
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 3/142 (2%)

Query: 72  IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 131
               +   ++ A    +   + FPE          +L+ +G   EA   Y   +  +P  
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76

Query: 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191
              +       K   +   A++   + ++   A  DA   LA I+       +A   Y  
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 192 LILSQPTVPLYHLAYADVLYTL 213
            +  +P    +  AY ++ + L
Sbjct: 137 ALKLKPD---FPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +   +G   EA + Y   LE  P     H    ++ + QG    A+    + +     
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             DA+  +      +Q  + A  CY   I   P     H   A +    G +     A  
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP---EAIA 132

Query: 225 YY 226
            Y
Sbjct: 133 SY 134

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187
            P           I + QGN   A+    K LE F     A   LA +       ++A  
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
            Y+E I   PT    +    + L  +    ++  A + Y   I +
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQ---DVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 25/140 (17%), Positives = 44/140 (31%)

Query: 58  ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117
            + P+    +  ++        L  A    K   +  P         G  L+       A
Sbjct: 37  EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96

Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177
            + Y+  ++ NP     H    +I K  GN P AI      L+      DA+  LA    
Sbjct: 97  LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 178 SLQMYKQAAFCYEELILSQP 197
            +  +       ++L+    
Sbjct: 157 IVCDWTDYDERMKKLVSIVA 176

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G      G W +A+K + +L   +  D        A  ++ G +  A++  +      + 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           +       AE ++ L     A   +          P +    A
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178
              + L   +                 G +  A +           D   +  L     S
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 236
           L +Y+QA   Y    L     P +    A+    LG   ++  A+  + S   L   +
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQ 119

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 15/121 (12%), Positives = 40/121 (33%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +      + +A K +    E +P +   + +   +A  +  F       ++    F  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +     AEI      + +A   Y+  I  +  +   ++  A ++     +      + 
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 225 Y 225
           +
Sbjct: 431 F 431

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           GI    K     A +     +E  P         + +A  + +      + +K L+    
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSN 302

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           +   +    ++   LQ Y QA   +++     P     ++  A + Y     D+    + 
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD---CET 359

Query: 225 YYASTIDL 232
            ++     
Sbjct: 360 LFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR----- 138
               +  +K FPE+  V      +L  K  + +A K Y   +E       ++        
Sbjct: 359 TLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 139 ----VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194
               +       NF  A   L K  +       A   LA++ +  +   +A   +EE   
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

Query: 195 SQPTVPLYHLAYA 207
              T+     A  
Sbjct: 478 LARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 4/129 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           +    +A  L+ E     +   +      +  +        + +   A E + K +E   
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF 267

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
              +++  +A I        +    +++ +         +     + + L   D    A 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ---AG 324

Query: 224 KYYASTIDL 232
           K +    +L
Sbjct: 325 KDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 1/156 (0%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           +G        + +A K Y+  LE    DPV +    A   + G+    +E   K LE   
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
                    A     L  +  A F    L L+            +       +  +    
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 224 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN 259
               +        +T+           +  +T   +
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 21/122 (17%), Positives = 47/122 (38%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K +   M 
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A  +   + +      +A   +++++ S P+      A + ++           A  
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129

Query: 225 YY 226
            +
Sbjct: 130 AF 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---------------QGNFP 149
           G LL  +G   EAE  +  +L+ NP +    +    + KA                 ++ 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
            AI +L+K LE  + D +     AE ++     ++A    +     +          + +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 210 LYTLG 214
            Y LG
Sbjct: 198 YYQLG 202

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYL 159
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 18/174 (10%), Positives = 47/174 (27%), Gaps = 26/174 (14%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +  A G    A    + ++           +R  +   QG    A +   K L++  +
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 165 DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
           + +     +++                     Y  A    ++++             A+ 
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALF--GICLCS-----SAIAQLTK 256
               G       A     +   L    NT+A +              +++++ +
Sbjct: 164 FIKEGEPRK---AISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 13/80 (16%), Positives = 24/80 (30%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 165 DHDAWRELAEIYVSLQMYKQ 184
           D      L +    L+  ++
Sbjct: 339 DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 22/204 (10%), Positives = 57/204 (27%), Gaps = 30/204 (14%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE---- 160
                 +G   +A     +  +    +     +   +    G+   ++  + + L+    
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 161 --------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAY---AD 208
                     +   +   E AE  +    Y  A   YE ++ ++P+V      +      
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 209 VLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF--GICLCSS-----AIAQLTKGRNKE 261
                        A +  +  + +    N  AL               AI      + + 
Sbjct: 281 CFSKDEKPVE---AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ-EH 335

Query: 262 DKESPELQSLAAAALE--KDYKQR 283
           ++   +++     A    K  ++R
Sbjct: 336 NENDQQIREGLEKAQRLLKQSQKR 359

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 4/144 (2%)

Query: 90  LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149
           + K    S ++     +  +    + +A   Y  LL+  P +    +    +   +G   
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208
            A+    K L+    +  A   L   Y  + +  K+      + + S   +         
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165

Query: 209 VLYTLGGVDNILLAKKYYASTIDL 232
                   +    A+      I  
Sbjct: 166 SKLFTTRYEK---ARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNP----------------LDPVLHKRRVAIAKAQGN 147
           +       G   +A   +   +  N                 +   L        K   N
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           +  A  +  + L+    + D     AE+ V     K A   YE+++  +      ++   
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 208 DVLYTLGGVDNILLAKKYYASTIDL 232
           +  Y     +      +     +  
Sbjct: 130 NYYYLTA--EQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR- 138
            D A    K L ++ P +         +   +G   +A + Y  +L+    +   +    
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
                        +E   K L +      A        +    Y++A    +++IL  P+
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

Query: 199 VPLY 202
               
Sbjct: 190 TEAQ 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 18/111 (16%), Positives = 35/111 (31%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           E    + +   + +EK Y    E+   D             +G+ P  I ++   +    
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            D +AW+ L       +  + A    +  +  QP      +A A       
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 19/129 (14%), Positives = 33/129 (25%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G          + +  +P D    +          N   AI  L + LE   
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
            +  A   LA  Y +    + A    +  I   P                  +    +  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 224 KYYASTIDL 232
                  +L
Sbjct: 191 SVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 20/108 (18%), Positives = 35/108 (32%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L    G +  A  A+++ L   P D  L  R  A          A+E   + LE    
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
              +   L    ++L  Y++A   +   +  Q             +  
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143
            D  KV+Q +  +        G LL  +G   EAE  +  +L+ NP +    + +  + K
Sbjct: 81  PDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 144 AQ---------------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188
           +                G++  AI +L+K LE  + D +     AE ++     ++A   
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199

Query: 189 YEELILSQPTVPLYHLAYADVLYTLG 214
            +     +          + + Y LG
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLG 225

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 22/124 (17%), Positives = 50/124 (40%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K ++  M 
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A  +   + +      +A   +++++ S P+      A + ++ +         A  
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152

Query: 225 YYAS 228
            + S
Sbjct: 153 AFGS 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYL 159
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 15/93 (16%), Positives = 32/93 (34%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
            +     G +  A      +LE    D  L + R      +G    AI  L    +    
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
           + +A+ +++ +Y  L  ++ +     E +    
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 26/174 (14%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +  A G    A    + +++          +R  +   QG    A +   K L++  +
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 165 DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
           +++     +++                     Y  A    ++++             A+ 
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALF--GICLCSS-----AIAQLTK 256
               G       A     +   L    NT+A +              +++++ +
Sbjct: 187 FIKEGEPRK---AISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 15/102 (14%), Positives = 28/102 (27%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206
           D      L +    L+  ++  +     +           AY
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+ L  + L+ ++                 H        A G    A+   +  ++    
Sbjct: 10  GVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           ++ A+   A +++++   K A     ++I  +       L    +L   G +D    A+ 
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE---AED 115

Query: 225 YYASTIDL 232
            +   +  
Sbjct: 116 DFKKVLKS 123

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 19/94 (20%), Positives = 29/94 (30%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            D      LA  + +      A       +LSQP
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 11/70 (15%), Positives = 15/70 (21%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
             N   A        +      +AWR L       +    A        +  P     H 
Sbjct: 30  LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89

Query: 205 AYADVLYTLG 214
           A A       
Sbjct: 90  ALAVSHTNEH 99

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 15/109 (13%), Positives = 28/109 (25%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G + +A   + +L   +  D        A  +A G +  AI   +      + 
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
           +       AE  +      +A              P +      V   L
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 3/117 (2%)

Query: 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175
                 + L E +                 G +  A             D   +  L   
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             ++  Y  A   Y    +     P +    A+ L   G +     A+       +L
Sbjct: 65  RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE---AESGLFLAQEL 118

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 8/134 (5%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143
                 +++   E +   ++        G            +E        H+    + K
Sbjct: 59  STLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117

Query: 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203
              N    ++             +  R   + Y +   +  A   Y E+I   P      
Sbjct: 118 -LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DA 173

Query: 204 LAY---ADVLYTLG 214
             Y   A  L  L 
Sbjct: 174 RGYSNRAAALAKLM 187

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G     K  W  A KAY+ +++  P D   +  R A      +FP AI   NK +E    
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
              A+   A   ++++ Y  A    +            +   +
Sbjct: 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAE---VNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +L       +  K   +    NP      +        + ++P A++   + ++    
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLG 214
           D   +   A     L  + +A     + I   P    +  AY   A     + 
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVK 221

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 1/110 (0%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                 KG +  A    +  +E        +K         GN    +  L K +E +  
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-Q 103

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
                   A+I   L+  ++     E      P             +T  
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 5/137 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +      +  A++ +      NP +   + +   +   QG F  +  + N+    F  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +     AEI      +  A   Y+     +         +  +   +G    +     
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV---QEKIHVGIGPLIGKATILARQSS 433

Query: 225 YYASTIDLTGGKNTKAL 241
              + +D    K   A+
Sbjct: 434 QDPTQLDE--EKFNAAI 448

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 34/195 (17%), Positives = 54/195 (27%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G        + EA K Y   +E +P +PV +    A   + G+    IE+  K LE    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A    A    SL  +  A F    L L+            +       +  +     
Sbjct: 92  HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLS 151

Query: 225 YYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRA 284
                       NT       +  S +   +   +     +  L S A   L     +  
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 285 PAKLLLLTSALKSLK 299
                LLT +     
Sbjct: 212 LVANDLLTKSTDMYH 226

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 1/165 (0%)

Query: 50  LNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE 109
           L+       L  +         I       L  A+  ++      P       L  + L 
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL-ALTLA 287

Query: 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169
            K    E  K +   ++ NP  P  +  R  +     ++  A E   K       +   +
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347

Query: 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            +LA +      + ++   + E  L  PT+P     +A++L   G
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 116 EAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
             E   + L   +P       V  K R        NF  AI++    +E    +   +  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           ++  Y+S    ++      + +  +P      L  A    +LG
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 3/114 (2%)

Query: 103 LEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
           LE   +     +  A    S  L+      D         + K+   + + +        
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237

Query: 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
                  A       +        A    +E I   PT   Y    A  L    
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKE 290

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLH----------------KRRVAIAKAQGNF 148
             +L  +G +  A K Y        +   +H                  +      +  F
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
             AI+ L K  E       A   LA++ + ++   +A   +E+  +   T+     A  
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 2/147 (1%)

Query: 83  AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142
             D +   +  + E+  V        + +    +  +    +L    ++      +    
Sbjct: 53  LVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL 112

Query: 143 KAQGNFPT-AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201
               ++   A   L+K ++      +AW +L E+Y        A  C+   +        
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS 172

Query: 202 YHLAYADVLYTLGGVDNILLAKKYYAS 228
                + VL  L        ++    S
Sbjct: 173 LQ-NLSMVLRQLQTDSGDEHSRHVMDS 198

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 10/231 (4%)

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P +  L    +   +             + +K+  + + +   +    +        E  
Sbjct: 44  PSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------LAE 174
                 +            A    + ++   I  L K L   +   D ++       +A 
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163

Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYYASTI 230
           IY      K+    +E+++     +         V Y              +       I
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223

Query: 231 DLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYK 281
           +++   N+ AL G                + + E    ++     + + + 
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKR 137
           LD+A+  +K +Q Q  ++         +  A G     +A   +  + +      +L   
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY-EELILSQ 196
           + A   AQG +  A   L + L+      +    L  +   L    +    Y  +L  + 
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Query: 197 PTVPL 201
            + P 
Sbjct: 266 RSHPF 270

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   +       L 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 10/113 (8%), Positives = 20/113 (17%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  +       +     P   +   +       L  V 
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 191

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 10/112 (8%), Positives = 21/112 (18%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + +  G 
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------EQVVAIASHDGG 421

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 11/113 (9%), Positives = 23/113 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  ++      +     P   +   + +     L  V 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   +       L 
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A    +    +L+  ++      +     P   +   +       L 
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 9/113 (7%), Positives = 21/113 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  ++      +     P   +   +       L  + 
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 14/120 (11%), Positives = 25/120 (20%), Gaps = 6/120 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A         +L+         +  + +          +   L  LGG   +   KK
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 12/113 (10%), Positives = 27/113 (23%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +   + + A       + L   P   V         +A       +  L +       
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  ++      +     P   +   ++      L  V 
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
            D      LA  + +      A       +LSQP        Y  +       D  +   
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-------YEQLGSVNLQADVDIDDL 139

Query: 224 KYY 226
              
Sbjct: 140 NVQ 142

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 20/103 (19%)

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
           G   +    Y     +  +                N   A        +      +AWR 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           L       +    A        +  P     H A A       
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 18/93 (19%), Positives = 29/93 (31%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L      +  A       +E  P D  L  +  A          A++  N+ L+    
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
                  +A  Y ++  Y  AA      I  Q 
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 18/117 (15%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA---------------KAQGNFP 149
            +    +     A  +  + L   P    L    +                   A   + 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206
                L+  LE    D      L  +Y     Y  AA      +  +P        +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLW 209

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 8/139 (5%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLA 222
            +  A   LA  + +  + +QA     + +   P        YA ++     G     L 
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-------YAHLVTPAEEGAGGAGLG 182

Query: 223 KKYYASTIDLTGGKNTKAL 241
                    L+     +  
Sbjct: 183 PSKRILGSLLSDSLFLEVK 201

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 95  PESKRVGRLEGILLEAKGLWAEA-----EKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNF 148
            E + + + +         + +      +K Y    E+NPL D             +G+ 
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ-FEEENPLRDHPQPFEEGLRRLQEGDL 80

Query: 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208
           P A+      ++      +AW+ L       +    A       +  +P      +A A 
Sbjct: 81  PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 140

Query: 209 VLYTLG 214
                 
Sbjct: 141 SFTNES 146

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L    G + +A   +++ L   P D +L  +  A          A+    + LE    
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH----LAYADVLYTLG 214
              +   L    ++L  +++A   + E +  Q               ++  TL 
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G + +A +A++  +E+N  D + +     +  +      A+ + +K LE   +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A+     +YV  +MYK+A   +E+ + +            D+ Y LG
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-------NGDLFYMLG 132

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 16/125 (12%), Positives = 38/125 (30%), Gaps = 13/125 (10%)

Query: 115 AEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
             +   +       P    +  +   +++      G++  A E   K +E    D   + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVDNILLAKKYYA 227
             A +  S+   ++A   Y++ +    +      AY    +V            AK  + 
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKE---AKDMFE 115

Query: 228 STIDL 232
             +  
Sbjct: 116 KALRA 120

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 18/110 (16%), Positives = 31/110 (28%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L        A       +E N  D     +       +G    A+       E    
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+      Y   +  ++A    ++ I  QP   L   A   + +   
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLH-------------------KRRVAIAKAQ 145
                 K    +A +     LE  P +  LH                          K  
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---LY 202
                A+  L K  E           LA ++     Y++A + +++    + T     L 
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 203 HLAYADVLYTLGGVDNILLAKKYY 226
           HL Y +             A  ++
Sbjct: 374 HLRYGNFQLYQMK--CEDKAIHHF 395

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 59  LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK------QFPESKR-VGRLEGILLEAK 111
             P        ++IA+        +++ I  L++           K  +      + E  
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
               E EK     LE  P    + +      + +     AIE L K LE    +     +
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 172 LAEIYVS-------------------LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
           +   Y +                   L++   A    ++   +   +       A +   
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346

Query: 213 LGGVDNILLAKKYY 226
                    A+ Y+
Sbjct: 347 AD---QYEEAEYYF 357

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 12/179 (6%)

Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETFM 163
           L         A+  +   LE  P +P         +    N+P    AI+ L + +    
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206

Query: 164 ADHDAWRELAEIYVSLQM----YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
            +      LA     ++       +     EE +   P V     + A         D  
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK- 265

Query: 220 LLAKKYYASTIDLTGGKNTKALFGICLC-SSAIAQLTKGRNKEDKESPELQSLAAAALE 277
             A +     ++     N      I  C  + + Q+   R        +L  L   A+ 
Sbjct: 266 --AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203
           +Q N    ++ L   +     + + W  L E Y+    Y  +   Y + +  +      +
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKE 261
            A A VLY           +      + L       AL  +     A     +    +
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLL-----ASDAFMQANYAQ 133

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 11/115 (9%), Positives = 23/115 (20%), Gaps = 7/115 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
              A         +L+  ++      +     P            + + GG   +
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD-------QVVAIASNGGKQAL 408

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 9/110 (8%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V     +   +A       +  L +       
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE 342

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                   +  V     +   +A       +  L +      A
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + + GG 
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-------DQVVAIASNGGG 676

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 11/93 (11%), Positives = 31/93 (33%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G++       A+A++ +   L  N   P +      +   +  +  A ++ + + +    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
           +  +      +    +    AA    +L    P
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM- 163
            ++ + +     A++ Y   L  +  +  +          Q  +  A + L +  +  + 
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137

Query: 164 -ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222
                 +  L  + + ++   QA   +E+ +      P   L  AD+LY        + A
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPA 194

Query: 223 KKYYASTIDL 232
           ++YY      
Sbjct: 195 RQYYDLFAQG 204

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 37/128 (28%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L ++ GL A A   +S  L   P  P +           GNF  A E  +  LE    
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
            + A              K A           P  P   L        L       + K+
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169

Query: 225 YYASTIDL 232
           ++  +   
Sbjct: 170 HFEKSDKE 177

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 3/142 (2%)

Query: 91  QKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150
              + +S+ +       L+ + + A  E+  +S    +     L   R  +  + G    
Sbjct: 2   NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61

Query: 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210
           A    ++ L       + +  L         +  A   ++ ++   PT    HL     L
Sbjct: 62  ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121

Query: 211 YTLGGVDNILLAKKYYASTIDL 232
           Y  G      LA+    +    
Sbjct: 122 YYGGRDK---LAQDDLLAFYQD 140

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+       +  A      + E NP++  +  R        G F  AI+     L     
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210
           +    R +A  Y  +  +++A   +++            +  A V 
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG---ASVELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           GI     G +++A      + + +  D  +           G      E L + L     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +      L   YV +Q Y  A     ++  + P          +V + LG
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-------NFNVRFRLG 117

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 145 QGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--- 198
            G +  A +    +LE +       +A   L E Y + + ++ A   + +L+   PT   
Sbjct: 15  NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74

Query: 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231
                L      Y  G       A++       
Sbjct: 75  AAGGLLKLGLSQYGEGKNTE---AQQTLQQVAT 104

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 1/117 (0%)

Query: 98  KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157
             + R        KG   +A          NP    LH +R  +    G    A   L +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            L       +    LAE+Y+S+    +A   Y + +   P      + YA  L   G
Sbjct: 144 ALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 13/164 (7%)

Query: 61  PDVWTLYEQ--VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE 118
             + T + Q    +   D + L+ A + +  + +  PE       + ++   +      +
Sbjct: 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253

Query: 119 KAYSSLLE----------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168
           +   + L           +     ++++ +   A  +G    + + +N  ++  M     
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLN 312

Query: 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
           +  L ++Y    M ++AA  Y      +P     +     +  T
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQT 356

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 99  RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158
           +     G L  A+      E    +    +      +K RV   +  G+   A  WL   
Sbjct: 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241

Query: 159 LETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELI 193
            +   A++      WR +A   + L  ++ A    EEL 
Sbjct: 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 106 ILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
            L       AE+   +   L D   P   + +  +   +  QG F  A  +L + L    
Sbjct: 85  FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
               A++ELA   +       A + +++       +    L           + N   A 
Sbjct: 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAY 202

Query: 224 KY 225
           +Y
Sbjct: 203 EY 204

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
             +L+       A K     +E N  +  V H RRV +   Q +    + ++   +E   
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            ++  W     +   L+   Q      +++    
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.94
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.9
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.82
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.81
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.81
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.81
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.79
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.79
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.75
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.74
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.73
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.72
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.69
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.61
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.57
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.56
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.54
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.52
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.52
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.5
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.43
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.38
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.33
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.28
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.26
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.24
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.77
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.73
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.37
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.08
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.96
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.83
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.67
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.63
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.61
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.57
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.22
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.93
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.85
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.46
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.27
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.11
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.0
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.84
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.71
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.69
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.54
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.42
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.4
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.34
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.96
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.9
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.04
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.2
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.23
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.25
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.06
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	80.98

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=3.4e-29  Score=200.57  Aligned_cols=193  Identities=12%  Similarity=-0.006  Sum_probs=179.2

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      |.++.++..+|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          141 IAKAQ-----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       141 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      ++...           |++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       210 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      +...|+   +++|+..|+++++++|+ +..+++.++.++..+++..++.
T Consensus       161 ~~~~g~---~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          161 YLSMGR---LDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------
T ss_pred             HHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHH
Confidence            999999   99999999999999996 9999999999999988865543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=5.3e-28  Score=188.19  Aligned_cols=174  Identities=17%  Similarity=0.056  Sum_probs=168.9

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      +...+|.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++..+|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                      +...++++.|+..+.+++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++..+|+   +++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~  159 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---RDE  159 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHhcccCCCchh
Q 022205          222 AKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       222 A~~~~~~al~~~p~~~~~  239 (301)
                      |+.+|+++++++|+ +.+
T Consensus       160 A~~~~~~al~~~p~-~a~  176 (184)
T 3vtx_A          160 AVKYFKKALEKEEK-KAK  176 (184)
T ss_dssp             HHHHHHHHHHTTHH-HHH
T ss_pred             HHHHHHHHHhCCcc-CHH
Confidence            99999999999995 543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=2e-27  Score=205.41  Aligned_cols=192  Identities=11%  Similarity=0.061  Sum_probs=182.5

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLH  135 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~  135 (301)
                      ..++|....++..++.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|++++..+|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            356888999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG  214 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~  214 (301)
                      ..+|.++...|++++|+..|+++++++|+++.+|+++|.++...|++++|+.+|++++.++|++..+|.++|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 55


Q ss_pred             CCCcHHHH-----HHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          215 GVDNILLA-----KKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       215 ~~~~~~~A-----~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      .   +++|     +.+|++++.++|+ +..+|++++.++...+
T Consensus       250 ~---~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          250 Y---NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG  288 (382)
T ss_dssp             S---CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC
T ss_pred             c---chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccC
Confidence            5   4777     5999999999996 9999999998887754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=1e-25  Score=180.31  Aligned_cols=185  Identities=19%  Similarity=0.089  Sum_probs=163.2

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---  111 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---  111 (301)
                      ..++.++++......+..       +|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...   
T Consensus        17 ~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~   89 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ   89 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence            456677788777777766       8889999999999999999999999999999999999999999999999999   


Q ss_pred             --------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          112 --------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       112 --------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                              |++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+ +++.+++.+|.++...|+++
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence                    999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      +|+..|++++.++|+++.++..+|.++...|+   +++|+..|+++-
T Consensus       169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~  212 (217)
T 2pl2_A          169 EALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence            99999999999999999999999999999999   999999998753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=3.3e-25  Score=192.29  Aligned_cols=192  Identities=17%  Similarity=0.120  Sum_probs=128.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +|+...++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus       131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  210 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG  210 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~  287 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS---V  287 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---H
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---H
Confidence            6666666666666666666666666666666667777667777777777777776666666666667777766666   7


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      ++|+..|+++++++|+ +..++..++.++...++..
T Consensus       288 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  322 (388)
T 1w3b_A          288 AEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHH
Confidence            7777777777766664 6666666666666555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=5.6e-25  Score=190.83  Aligned_cols=234  Identities=15%  Similarity=0.058  Sum_probs=197.8

Q ss_pred             ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCC---------cCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205           22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---------RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK   92 (301)
Q Consensus        22 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   92 (301)
                      ..|...+.......+........++......+..         ....+|....++..+|.++...|++++|+..+++++.
T Consensus       118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  197 (388)
T 1w3b_A          118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566666666555554444333333332221110         1122677888999999999999999999999999999


Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (301)
                      .+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T 1w3b_A          198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      |.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+..|+++++++|+ +..+++.++.++...+
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999   99999999999999996 8889999999998888


Q ss_pred             hhhccCC
Q 022205          253 QLTKGRN  259 (301)
Q Consensus       253 ~~~~~~~  259 (301)
                      +..++..
T Consensus       354 ~~~~A~~  360 (388)
T 1w3b_A          354 KLQEALM  360 (388)
T ss_dssp             CCHHHHH
T ss_pred             CHHHHHH
Confidence            7665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=2.8e-25  Score=192.00  Aligned_cols=218  Identities=10%  Similarity=0.089  Sum_probs=198.6

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCchhhH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVG  101 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~  101 (301)
                      .+|..+..+.. ..++.+.++......+..       +|.+..+|..+|.++...|+ +++|+.++++++..+|++..+|
T Consensus        98 ~a~~~lg~~~~-~~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           98 DVYDYFRAVLQ-RDERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHH-HTCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHH-HCCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            35555554443 446677888888877765       88999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cc
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQ  180 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~~  180 (301)
                      ..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 56


Q ss_pred             cHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          181 MYKQA-----AFCYEELILSQPTVPLYHLAYADVLYTLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       181 ~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .+++|     +.+|++++.++|++..+|..+|.++...|  +   +++|+..+.++ +.+|+ +..++..++.++..+++
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~---~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK---YPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG---CHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc---hHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhc
Confidence            55777     59999999999999999999999999988  6   89999999998 88996 99999999999999874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.94  E-value=2.8e-25  Score=178.78  Aligned_cols=181  Identities=11%  Similarity=-0.007  Sum_probs=170.6

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      ++..+..+|.+++..|++++|+..|++++...| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            347888999999999999999999999999998 8889999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT  212 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~  212 (301)
                      +...|++++|+..|+++++.+|+++       .++..+|.++...|++++|+.+|+++++++|+  ++.++..+|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999999998       66999999999999999999999999999999  99999999999999


Q ss_pred             cCCCCcH---------------------------HHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205          213 LGGVDNI---------------------------LLAKKYYASTIDLTGGKNTKALFGICLC  247 (301)
Q Consensus       213 ~~~~~~~---------------------------~~A~~~~~~al~~~p~~~~~~~~~l~~~  247 (301)
                      .|+   .                           ++|+.+|+++++++|+ +..+...++.+
T Consensus       166 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i  223 (228)
T 4i17_A          166 NGA---DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV  223 (228)
T ss_dssp             HHH---HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHH---HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence            998   7                           9999999999999996 77766655543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.94  E-value=3.1e-25  Score=197.76  Aligned_cols=195  Identities=15%  Similarity=0.017  Sum_probs=187.3

Q ss_pred             CchhHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .|....++..+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+ ..++..+
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            667888999999999999999 99999999999999999999999999999999999999999999999999 7999999


Q ss_pred             HHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHhhCC---C
Q 022205          139 VAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--------QMYKQAAFCYEELILSQP---T  198 (301)
Q Consensus       139 ~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~  198 (301)
                      |.++...         |++++|+..|+++++.+|+++.+|+.+|.++...        |++++|+.+|++++.++|   .
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  256 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS  256 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence            9999999         9999999999999999999999999999999999        999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCC
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN  259 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~  259 (301)
                      ++.++.++|.++...|+   +++|+.+|+++++++|+ +..++..++.++..+++..++..
T Consensus       257 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          257 NPDLHLNRATLHKYEES---YGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999996 99999999999999998665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=1.5e-25  Score=192.83  Aligned_cols=212  Identities=9%  Similarity=0.040  Sum_probs=172.5

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      .++.+.++......+..       +|....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+++
T Consensus        78 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  150 (365)
T 4eqf_A           78 EGDLPVTILFMEAAILQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ  150 (365)
T ss_dssp             HTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence            34555666666655544       56677788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHH
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRR----------VAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~  183 (301)
                      +|+..|++++..+|++..++..+          |.++...|++++|+..|++++..+|.  ++.++..+|.++...|+++
T Consensus       151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~  230 (365)
T 4eqf_A          151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN  230 (365)
T ss_dssp             HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence            88888888888777765555444          77888888888888888888888888  8999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      +|+.+|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++|+ +..+++.++.++..+++..++.
T Consensus       231 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999   99999999999999996 8999999999999998755543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=1.7e-25  Score=207.38  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=169.3

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      ..|++..++.++|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++++|+..|+++++.+|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  218 (301)
                      |.++..+|++++|+..|+++++++|+++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|+   
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~---  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHhcccCC
Q 022205          219 ILLAKKYYASTIDLTGG  235 (301)
Q Consensus       219 ~~~A~~~~~~al~~~p~  235 (301)
                      +++|.+.|++++++.|+
T Consensus       161 ~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          161 WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            99999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=6.5e-24  Score=182.34  Aligned_cols=212  Identities=11%  Similarity=0.074  Sum_probs=137.9

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (301)
                      ..++.+.++......+..       +|....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++
T Consensus        76 ~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  148 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ  148 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence            344566666666666544       6667778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 022205          115 AEAEKAYSSLLEDNPLDPVLHK----------------RRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIY  176 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~  176 (301)
                      ++|+..+++++..+|.+...+.                .++.++ ..|++++|+..|+++++.+|.  ++.++..+|.++
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~  227 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  227 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence            8888888777776666544332                233333 455555555555555555555  555566666666


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      ...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++|+ +..+++.++.++..+++..+
T Consensus       228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHH
Confidence            666666666666666666666666666666666666666   66666666666666653 55566666666665555444


Q ss_pred             cC
Q 022205          257 GR  258 (301)
Q Consensus       257 ~~  258 (301)
                      +.
T Consensus       304 A~  305 (368)
T 1fch_A          304 AV  305 (368)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-23  Score=177.70  Aligned_cols=236  Identities=10%  Similarity=-0.041  Sum_probs=181.7

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL  113 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~  113 (301)
                      ..++.+.++......+..       +|....++..+|.++...| ++++|+.++++++...|.++.++..+|.++...|+
T Consensus        68 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  140 (330)
T 3hym_B           68 ELNKANELFYLSHKLVDL-------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE  140 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHH-------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred             HhhhHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence            345667777777776654       5666777888888888888 88888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +++|+..|++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhC---------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc
Q 022205          194 LSQ---------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE  264 (301)
Q Consensus       194 ~~~---------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  264 (301)
                      ...         |..+.++..+|.++...|+   +++|+.+|+++++++|+ +..+++.++.++..+++..++.....+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            775         5666788888888888888   88888888888888885 7888888888888888766544333222


Q ss_pred             --chHHHHHHHHHHHHHHH
Q 022205          265 --SPELQSLAAAALEKDYK  281 (301)
Q Consensus       265 --~~~~~~~~~~~l~~~~~  281 (301)
                        ..+-...+...+...+.
T Consensus       297 l~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          297 LGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             TTTCSCCHHHHHHHHHHHH
T ss_pred             HccCCCchHHHHHHHHHHH
Confidence              11112334455555553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=182.79  Aligned_cols=212  Identities=9%  Similarity=-0.042  Sum_probs=179.5

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LW  114 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~  114 (301)
                      .++.+.++.....++..       +|..+..+..++.++...|++++|+..+++++..+|+++.++..+|.++...| ++
T Consensus        35 ~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  107 (330)
T 3hym_B           35 NCDFKMCYKLTSVVMEK-------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN  107 (330)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred             cCCHHHHHHHHHHHHHc-------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence            36777788777777755       55666667777788888889999999999988888888888888898888888 88


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      ++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  187 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS  187 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88999999998888888888888999999999999999999999988888888888889999889999999999999998


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---------CCCchhHhhhHHHHHHHHHhhhccC
Q 022205          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---------GGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      .+|+++.++..+|.++...|+   +++|+.+|+++++..         | ....+++.++.++...++..++.
T Consensus       188 ~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          188 IAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNEVTVD-KWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCSCTTT-TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccccccc-HHHHHHHHHHHHHHHhcCHHHHH
Confidence            888888888889999998888   999999999888876         4 36778888888888887766544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=2.8e-24  Score=173.84  Aligned_cols=202  Identities=12%  Similarity=0.006  Sum_probs=175.8

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      ++.+.++......+..       +|....++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++
T Consensus        37 ~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  109 (243)
T 2q7f_A           37 GDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE  109 (243)
T ss_dssp             -----CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence            3444444444444543       667788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...
T Consensus       110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      |+++.++..+|.++...|+   +++|+.+|+++++++|+ +..+++.++.+..
T Consensus       190 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~  238 (243)
T 2q7f_A          190 PGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPD-HMLALHAKKLLGH  238 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTT-CHHHHHHHTC---
T ss_pred             cccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcc-hHHHHHHHHHHHh
Confidence            9999999999999999999   99999999999999996 8888877765443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-24  Score=175.67  Aligned_cols=190  Identities=14%  Similarity=0.031  Sum_probs=178.4

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV  133 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  133 (301)
                      +..+..+..+|.+++..|++++|+.+++++++.+ .++.++..+|.++...|++++|+..+++++..+|++       +.
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            4567789999999999999999999999999999 889999999999999999999999999999988876       78


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHH--------------------------hcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLE--------------------------TFMADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      ++..+|.++...|++++|+..|++++.                          .+|.++.++..+|.++...|++++|+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  160 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK  160 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999                          667778899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      +|++++..+|.++.++..+|.++...|+   +++|+.+|+++++.+|+ +..+++.++.++..+++..
T Consensus       161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          161 AYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999   99999999999999996 9999999999999988633

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=1.2e-23  Score=167.99  Aligned_cols=190  Identities=13%  Similarity=0.065  Sum_probs=179.1

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|..+.++..+|..++..|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-CChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          140 AIAKAQ-GNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       140 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                      .++... |++++|+..++++++  .+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|+ 
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-
Confidence            999999 999999999999999  6677789999999999999999999999999999999999999999999999999 


Q ss_pred             CcHHHHHHHHHHHhcccC-CCchhHhhhHHHHHHHHHh
Q 022205          217 DNILLAKKYYASTIDLTG-GKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       217 ~~~~~A~~~~~~al~~~p-~~~~~~~~~l~~~~~~l~~  253 (301)
                        +++|..+|+++++.+| . +...++.++.++...++
T Consensus       163 --~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          163 --LGDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGN  197 (225)
T ss_dssp             --HHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCc
Confidence              9999999999999999 6 77777777766666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=2.2e-24  Score=185.47  Aligned_cols=228  Identities=14%  Similarity=0.119  Sum_probs=188.5

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCC---------cCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---------RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ   93 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   93 (301)
                      .|..+++......+.+......++......+..         ...++|....++..+|.++...|++++|+.++++++..
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  162 (365)
T 4eqf_A           83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ  162 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            455555555555555554444444443322111         12236778889999999999999999999999999999


Q ss_pred             CCCchhhHHHH----------HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205           94 FPESKRVGRLE----------GILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus        94 ~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      .|++..++..+          |.++...|++++|+..|++++..+|.  ++.++..+|.++...|++++|+..|+++++.
T Consensus       163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99877776655          89999999999999999999999999  8999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----
Q 022205          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----  236 (301)
Q Consensus       162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~----  236 (301)
                      +|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+|.++...|+   +++|+.+|+++++++|+ .    
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~  319 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQ  319 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999   99999999999999985 1    


Q ss_pred             ------chhHhhhHHHHHHHHHh
Q 022205          237 ------NTKALFGICLCSSAIAQ  253 (301)
Q Consensus       237 ------~~~~~~~l~~~~~~l~~  253 (301)
                            ....|..++.++..+++
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          320 VPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             -------CHHHHHHHHHHHHHTC
T ss_pred             cchhhhHHHHHHHHHHHHHHcCc
Confidence                  26778888888888876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=5.6e-24  Score=175.21  Aligned_cols=184  Identities=10%  Similarity=0.029  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVA  140 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~  140 (301)
                      ..+...|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999 4444    345899999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      ++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|...+..++   ++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~  159 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE---YV  159 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---HH
Confidence            999999999999999999999999999999999999999999999999999999999999999999955555668   99


Q ss_pred             HHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          221 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +|+..|+++++++|+ +..+++.++.++..+++
T Consensus       160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCc
Confidence            999999999999996 89999999999998876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=9.6e-24  Score=171.96  Aligned_cols=192  Identities=16%  Similarity=0.154  Sum_probs=182.8

Q ss_pred             cCCchh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           58 ALGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        58 ~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      ..+|.. ..++..+|..+...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            446665 8899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      .+|.++...|++++|+.++++++.  .+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            999999999999999999999999  888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +   +++|+.+|+++++.+|. +..+++.++.++...++
T Consensus       190 ~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~  224 (252)
T 2ho1_A          190 E---YVPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFED  224 (252)
T ss_dssp             C---HHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTC
T ss_pred             C---HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccC
Confidence            9   99999999999999995 88899999988887765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=4.2e-24  Score=172.81  Aligned_cols=187  Identities=13%  Similarity=0.023  Sum_probs=163.3

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+..+|..++..|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      ...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|+   +++|
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A  178 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM---LDEA  178 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          223 KKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       223 ~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +..|++++..+|+ +..+++.++.++...++
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHccC
Confidence            9999999999996 89999999999988876

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=171.64  Aligned_cols=201  Identities=12%  Similarity=0.022  Sum_probs=179.6

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-------hhhHHHHHHH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGIL  107 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~  107 (301)
                      ..++.+.++......+..       + ....++..+|.++...|++++|+.++++++...|++       +.++..+|.+
T Consensus        17 ~~~~~~~A~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~   88 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWEL-------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA   88 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHH-------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh-------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence            345667777776666654       2 345678889999999999999999999999988865       6889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          108 LEAKGLWAEAEKAYSSLLE--------------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      +...|++++|+..|++++.                          .+|.++.++..+|.++...|++++|+..|++++..
T Consensus        89 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  168 (258)
T 3uq3_A           89 YHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR  168 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999999999999999999                          67777889999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc------CC
Q 022205          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GG  235 (301)
Q Consensus       162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~  235 (301)
                      +|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++      |+
T Consensus       169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~p~  245 (258)
T 3uq3_A          169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSS  245 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhChhhcCCCc
Confidence            999999999999999999999999999999999999999999999999999999   999999999999999      74


Q ss_pred             CchhHhhhHHHH
Q 022205          236 KNTKALFGICLC  247 (301)
Q Consensus       236 ~~~~~~~~l~~~  247 (301)
                       +..++..+..|
T Consensus       246 -~~~~~~~l~~~  256 (258)
T 3uq3_A          246 -AREIDQLYYKA  256 (258)
T ss_dssp             -HHHHHHHHHHT
T ss_pred             -hHHHHHHHHHh
Confidence             66666665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.92  E-value=1e-23  Score=173.17  Aligned_cols=197  Identities=13%  Similarity=0.063  Sum_probs=176.6

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---  131 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  131 (301)
                      .+.|..+..++.+|..++..|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            3466778899999999999999999999999999999988   8899999999999999999999999999998855   


Q ss_pred             HHHHHHHHHHHHH--------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccHHHHH
Q 022205          132 PVLHKRRVAIAKA--------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA  186 (301)
Q Consensus       132 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~  186 (301)
                      +.+++.+|.++..        .|++++|+..|+++++.+|+++.++                 +.+|.+|...|++++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            5689999999999        9999999999999999999986665                 88899999999999999


Q ss_pred             HHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCCCcHHHHHHHHHHHhcccCCCc---hhHhhhHHHHHHH
Q 022205          187 FCYEELILSQPT---VPLYHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGGKN---TKALFGICLCSSA  250 (301)
Q Consensus       187 ~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~l~~~~~~  250 (301)
                      ..|++++...|+   .+.+++.+|.++..+          |+   +++|+..|+++++..|+ +   ..+...+..+...
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~~~~~  244 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD-SPLLRTAEELYTRARQR  244 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHH
Confidence            999999999998   467999999999988          66   99999999999999997 4   4555667778888


Q ss_pred             HHhhhccC
Q 022205          251 IAQLTKGR  258 (301)
Q Consensus       251 l~~~~~~~  258 (301)
                      +++..+..
T Consensus       245 ~~~~~~~~  252 (261)
T 3qky_A          245 LTELEGDA  252 (261)
T ss_dssp             HHHHHTCT
T ss_pred             HHHhhhhh
Confidence            88765544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=9e-23  Score=175.21  Aligned_cols=217  Identities=11%  Similarity=-0.043  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ...+..+|..++..|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHH----------------HHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWR----------------ELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA  205 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  205 (301)
                      ..|++++|+..+++++..+|.++..+.                .+|.++ ..|++++|+.+|++++..+|+  ++.++..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            999999999999999999999877665                467766 999999999999999999999  8999999


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccch--HHHHHHHHHHHHHHHhh
Q 022205          206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP--ELQSLAAAALEKDYKQR  283 (301)
Q Consensus       206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  283 (301)
                      +|.++...|+   +++|+.+|++++.++|+ +..+++.++.++...++..++.....+...  +....+...+..+|...
T Consensus       223 l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          223 LGVLFNLSGE---YDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            9999999999   99999999999999996 899999999999998887665433322211  11123344455555555


Q ss_pred             CC
Q 022205          284 AP  285 (301)
Q Consensus       284 ~~  285 (301)
                      +.
T Consensus       299 g~  300 (368)
T 1fch_A          299 GA  300 (368)
T ss_dssp             TC
T ss_pred             CC
Confidence            44

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=1.5e-22  Score=172.61  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---LDPVLHK  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~  136 (301)
                      +|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+|   ++..++.
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES  112 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence            3444445555555555555555555555555555555555555555555555555555555555555555   4444444


Q ss_pred             HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      .+            |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|.++.++.
T Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  192 (359)
T 3ieg_A          113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY  192 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44            355555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .+|.++...|+   +++|+..|+++++.+|+
T Consensus       193 ~la~~~~~~~~---~~~A~~~~~~a~~~~~~  220 (359)
T 3ieg_A          193 KISTLYYQLGD---HELSLSEVRECLKLDQD  220 (359)
T ss_dssp             HHHHHHHHHTC---HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHhhCcc
Confidence            55555555555   55555555555555553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=5e-22  Score=169.37  Aligned_cols=190  Identities=10%  Similarity=-0.067  Sum_probs=138.2

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK---  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---  136 (301)
                      .|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++.   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK  229 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            55566677777777777777777777777777777777777777777777777777777777777777777766544   


Q ss_pred             ---------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          137 ---------RRVAIAKAQGNFPTAIEWLNKYLETFMADHD----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       137 ---------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                               .+|.++...|++++|+..+++++..+|+++.    ++..+|.++...|++++|+.+|++++..+|+++.++
T Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  309 (359)
T 3ieg_A          230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence                     2366677777777777777777777777653    345577777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ..+|.++...|+   +++|+.+|+++++++|+ +..++..+..+...+.+
T Consensus       310 ~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          310 KDRAEAYLIEEM---YDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHH
Confidence            777777777777   77777777777777775 67777777766666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=2.2e-23  Score=161.97  Aligned_cols=157  Identities=18%  Similarity=0.091  Sum_probs=151.0

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      ++++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++..+|+++.++..+|.
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      ++...++++.|+..+.+++..+|.++.++..+|.++...|+   +++|+..|+++++++|. +..+++++|.++..+++.
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999   99999999999999996 999999999999998874


Q ss_pred             h
Q 022205          255 T  255 (301)
Q Consensus       255 ~  255 (301)
                      .
T Consensus       158 ~  158 (184)
T 3vtx_A          158 D  158 (184)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=2.8e-23  Score=175.17  Aligned_cols=212  Identities=13%  Similarity=0.080  Sum_probs=176.9

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (301)
                      ..++.+.++......+..       +|....++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus        33 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~  105 (327)
T 3cv0_A           33 KLANLAEAALAFEAVCQA-------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  105 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence            445667777777776654       5667788888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          115 AEAEKAYSSLLEDNPLDPVLHKRR--------------VA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      ++|+..+++++..+|.+..++..+              +. ++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus       106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  185 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS  185 (327)
T ss_dssp             HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence            999999999999888887777666              55 677788888999999999988888888899999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~  257 (301)
                      |++++|+.++++++..+|+++.++..+|.++...|+   +++|+.+|+++++.+|+ +..+++.++.++..+++..++
T Consensus       186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR---PQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHH
Confidence            999999999999998889888888999999999998   99999999999988885 888888888888887775543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=2.5e-23  Score=175.46  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=179.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHH--------------HH-HHHHcCCHHHHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE--------------GI-LLEAKGLWAEAEKAYSSL  124 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~a  124 (301)
                      +|....++..+|.++...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++
T Consensus        85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  164 (327)
T 3cv0_A           85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA  164 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence            677788999999999999999999999999999999988888776              66 688889999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       125 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      +..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++...|+++.++.
T Consensus       165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  244 (327)
T 3cv0_A          165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY  244 (327)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC-----------chhHhhhHHHHHHHHHhhhccC
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----------NTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      .+|.++...|+   +++|+.+|++++..+|+.           +..++..++.++..+++...+.
T Consensus       245 ~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          245 NMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcc---HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999   999999999999999942           6788899999999988755443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=4.5e-23  Score=181.89  Aligned_cols=193  Identities=13%  Similarity=0.001  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +|.....+..+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            66677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCH---HHHHHH------------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADH---DAWREL------------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      .++...|++++|+..|+++++.+|+++   .++..+            |.++...|++++|+.+|++++...|.++.++.
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  181 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE  181 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            777777777777777777777777776   665544            55577777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      .+|.++...|+   +++|+..|+++++.+|+ +..+++.++.++...++..+
T Consensus       182 ~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          182 LRAECFIKEGE---PRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHHTTC---GGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            77777777777   77777777777777774 77777777777777666443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.92  E-value=1.2e-23  Score=194.96  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=154.0

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (301)
                      ..|+++.++..+|.++..+|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      |.++...|++++|+.+|+++++++|+++.++.++|.++..+|+   +++|+.+|+++++++|+ +..++++++.++..++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence            9999999999999999999999999999999999999999999   99999999999999996 9999999999999988


Q ss_pred             hhhc
Q 022205          253 QLTK  256 (301)
Q Consensus       253 ~~~~  256 (301)
                      +..+
T Consensus       160 ~~~~  163 (723)
T 4gyw_A          160 DWTD  163 (723)
T ss_dssp             CCTT
T ss_pred             cHHH
Confidence            7543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=6e-22  Score=174.68  Aligned_cols=172  Identities=18%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  136 (301)
                      +|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+|++.   .++.
T Consensus        56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  135 (450)
T 2y4t_A           56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS  135 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            3344445555555555555555555555555555555555555555555555555555555555555555544   3333


Q ss_pred             HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      .+            |.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus       136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  215 (450)
T 2y4t_A          136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY  215 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            33            333455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          205 AYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      .+|.++...|+   +++|+..|++++.++|
T Consensus       216 ~l~~~~~~~g~---~~~A~~~~~~~~~~~p  242 (450)
T 2y4t_A          216 KISTLYYQLGD---HELSLSEVRECLKLDQ  242 (450)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence            55555555555   5555555555555555

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=5.2e-22  Score=161.62  Aligned_cols=196  Identities=12%  Similarity=-0.008  Sum_probs=180.4

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (301)
                      ..++.+.++......+..       +|....++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++
T Consensus        49 ~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  121 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEI-------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY  121 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HcCChHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence            345556666666655544       5667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          115 AEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       115 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ++|+..+++++.  .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++
T Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999  889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205          193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (301)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (301)
                      +...|.++.++..++.++...|+   +++|..++++++++.|+ +....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~  246 (252)
T 2ho1_A          202 AQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPG-SLEYQ  246 (252)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-SHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCC-CHHHH
Confidence            99999999999999999999999   99999999999999996 55443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=6.7e-22  Score=180.59  Aligned_cols=190  Identities=13%  Similarity=-0.013  Sum_probs=159.4

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|....++..++..+...|++++|+.+|++++...|.+..++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            45667777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------QPTV-PLYHLAYADVLYT  212 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~  212 (301)
                      .++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+.+|++++..      +|++ ..++..+|.++..
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888877      5554 6788888888888


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .|+   +++|+..|+++++++|+ +..+++.++.++...|+
T Consensus       529 ~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          529 LKM---YDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKI  565 (597)
T ss_dssp             TTC---HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTC
T ss_pred             hcC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCC
Confidence            888   88888888888888885 78888888888887775

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.91  E-value=1.2e-22  Score=156.98  Aligned_cols=171  Identities=15%  Similarity=0.039  Sum_probs=166.2

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      .....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~  162 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HEE  162 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHhcccCC
Q 022205          222 AKKYYASTIDLTGG  235 (301)
Q Consensus       222 A~~~~~~al~~~p~  235 (301)
                      |..+|+++++.+|+
T Consensus       163 A~~~~~~~~~~~~~  176 (186)
T 3as5_A          163 ALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.91  E-value=1e-22  Score=161.67  Aligned_cols=168  Identities=13%  Similarity=-0.019  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL----------------EGILLEAKGLWAEAEKAYSSLLED  127 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~  127 (301)
                      ...+...|..++..|++++|+.+|++++..+|+++.+++.                +|.++...|++++|+..|++++..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCHHHHHH
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--YKQAAFCYEELILSQPTVPLYHLA  205 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~  205 (301)
                      +|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.+|+..|+  ...+...|++++...| ...+++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence            999999999999999999999999999999999999999999999999987764  4567788888764333 2346788


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          206 YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +|.++...|+   +++|+.+|+++++++|+
T Consensus       163 ~g~~~~~~~~---~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          163 DGLSKLFTTR---YEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHT---HHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence            9999999999   99999999999999995

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=1.1e-22  Score=167.36  Aligned_cols=212  Identities=17%  Similarity=0.162  Sum_probs=184.7

Q ss_pred             hccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh----HHHHHHHHH
Q 022205           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV----GRLEGILLE  109 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~~a~~~~  109 (301)
                      ...++.+.++......+..       +|....++..+|.++...|++++|+..+++++. .|.++..    +..+|.++.
T Consensus        14 ~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAK-------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHT-------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence            3456677777777777765       566666888999999999999999999999999 5544444    899999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  189 (301)
                      ..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|...+..+++++|+.+|
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999995555566999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---CCC----chhHhhhHHHHHHHHHh
Q 022205          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---GGK----NTKALFGICLCSSAIAQ  253 (301)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~l~~~~~~l~~  253 (301)
                      ++++..+|+++.++..+|.++...|+...+++|+..|++++++.   |+.    ...+++.++.++...++
T Consensus       166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  236 (272)
T 3u4t_A          166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD  236 (272)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999988666788999999999886   421    13567778888877665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=4.9e-22  Score=165.95  Aligned_cols=185  Identities=10%  Similarity=-0.036  Sum_probs=168.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      +|..+.++..++..+...++.++|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~  135 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM  135 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence            5567788888999999999999999999999876  599999999999999999999999999998     899999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      +|.++..+|++++|+..|+++++.+|++.......+  .++...|++++|+.+|++++...|+++.++..+|.++..+|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999875544433  334456899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                         +++|...|++++.++|+ +..++++++.++..+|+
T Consensus       216 ---~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          216 ---WEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGK  249 (291)
T ss_dssp             ---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence               99999999999999996 99999999999988775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=1.3e-21  Score=156.01  Aligned_cols=196  Identities=15%  Similarity=0.059  Sum_probs=180.3

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CC
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GL  113 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~  113 (301)
                      ..++.+.++......+..       .|....++..+|.++...|++++|+.++++++...|.+..++..+|.++... |+
T Consensus        20 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKS-------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR   92 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHhhHHHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence            345667777777766654       5667788999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          114 WAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       114 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      +++|+..+++++.  .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999  67777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205          192 LILSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (301)
Q Consensus       192 al~~~p-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (301)
                      ++...| .++.++..++.++...|+   .+.|..+++.+.+.+|+ +..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~  219 (225)
T 2vq2_A          173 YQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPY-SEELQ  219 (225)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC-CHHHH
Confidence            999999 999999999999999999   99999999999999996 65544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=9e-24  Score=159.00  Aligned_cols=146  Identities=14%  Similarity=0.032  Sum_probs=118.4

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  149 (301)
                      ||..+...|++++|+..+.+++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            56666667888888888888888778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      +|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            888888888888888888888888888888888776665 478888888888888888888877775

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.4e-21  Score=178.39  Aligned_cols=240  Identities=13%  Similarity=-0.003  Sum_probs=189.2

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      .++.++++......+..       +|....++..++.++...|++++|+.++++++...|++..++..+|.++...|+++
T Consensus       318 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEI-------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred             hcCHHHHHHHHHHHHHc-------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence            44555566555555543       45555667777888888888888888888888888888888999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      +|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++..|.++.+|..+|.+|...|++++|+.+|++++..
T Consensus       391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc------cCCCchhHhhhHHHHHHHHHhhhccCCcccccch--H
Q 022205          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL------TGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP--E  267 (301)
Q Consensus       196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~  267 (301)
                      .|.++.++..+|.++...|+   +++|+..|+++++.      +|+....+|..++.++...++..++.....+...  .
T Consensus       471 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          471 FQYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             CCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999   99999999999888      4431267888888888888775544322221110  0


Q ss_pred             HHHHHHHHHHHHHHhhCC
Q 022205          268 LQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       268 ~~~~~~~~l~~~~~~~~~  285 (301)
                      ....+...+..+|...+.
T Consensus       548 ~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          548 NDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCC
Confidence            012344456666666655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.90  E-value=3.5e-23  Score=192.18  Aligned_cols=185  Identities=15%  Similarity=0.026  Sum_probs=171.7

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ--------KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL  130 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  130 (301)
                      ++|.++..+...+   +..|++++|+..+++++        ..+|++..++..+|.++...|++++|+..|++++..+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            3555555555444   77899999999999999        888999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      +..+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++ +.+|+++++++|+++.+++++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ..+|+   +++|+..|+++++++|+ +..++++++.++...
T Consensus       545 ~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~  581 (681)
T 2pzi_A          545 SAEGD---RVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSG  581 (681)
T ss_dssp             HHTTC---HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC--
T ss_pred             HHcCC---HHHHHHHHHhhcccCcc-cHHHHHHHHHHHHcc
Confidence            99999   99999999999999996 999999999887553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=3.2e-21  Score=161.02  Aligned_cols=190  Identities=11%  Similarity=0.008  Sum_probs=166.3

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (301)
                      ..+.+.++.....++..     ..+|++..++..+|.++...|++++|+.++++     |+++.++..+|.++..+|+++
T Consensus        78 ~~~~~~A~~~l~~ll~~-----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~  147 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSR-----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD  147 (291)
T ss_dssp             STTHHHHHHHHHHHHHS-----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence            34556666666665543     23578888999999999999999999999988     899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +|+..|++++..+|++.......+  .++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++
T Consensus       148 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999875444333  344456899999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhcccCCCchh
Q 022205          194 LSQPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLTGGKNTK  239 (301)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~  239 (301)
                      ..+|+++.++.++|.++...|+   ..+ +..+++++++++|+ +..
T Consensus       228 ~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~-~~~  270 (291)
T 3mkr_A          228 DKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRS-HPF  270 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTT-CHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCC-ChH
Confidence            9999999999999999999999   876 57899999999996 553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=5.4e-21  Score=157.34  Aligned_cols=209  Identities=15%  Similarity=0.029  Sum_probs=169.1

Q ss_pred             ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (301)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (301)
                      +.+.++......+...   ...+|..+.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|
T Consensus        20 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           20 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            3455666666666441   1124578889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      +..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.....++.+ ...|++++|+.++++++...|
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999998766655544 667999999999988887766


Q ss_pred             CC-------------------------------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205          198 TV-------------------------------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (301)
Q Consensus       198 ~~-------------------------------------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (301)
                      .+                                     +.++..+|.++...|+   +++|+.+|++++..+|+ +.. 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~-  250 (275)
T 1xnf_A          176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH-NFV-  250 (275)
T ss_dssp             CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT-TCH-
T ss_pred             cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch-hHH-
Confidence            54                                     4566677777777777   77777777777777774 322 


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 022205          241 LFGICLCSSAIAQLTKG  257 (301)
Q Consensus       241 ~~~l~~~~~~l~~~~~~  257 (301)
                        ..+.++..+++..++
T Consensus       251 --~~~~~~~~l~~~~~a  265 (275)
T 1xnf_A          251 --EHRYALLELSLLGQD  265 (275)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhh
Confidence              224455555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=1.6e-21  Score=156.63  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=149.3

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg  173 (301)
                      +.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            45678999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC--chhHhhhH
Q 022205          174 EIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--NTKALFGI  244 (301)
Q Consensus       174 ~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~l  244 (301)
                      .++...|++++|+.+|++++.++|+++       .++..+|.++...|+   +++|+.+|+++++++| .  +..+++++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTS-KKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence            999999999999999999999999999       669999999999999   9999999999999999 6  78999999


Q ss_pred             HHHHHHHHhh
Q 022205          245 CLCSSAIAQL  254 (301)
Q Consensus       245 ~~~~~~l~~~  254 (301)
                      +.++...++.
T Consensus       160 ~~~~~~~~~~  169 (228)
T 4i17_A          160 GVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=2.5e-22  Score=180.97  Aligned_cols=210  Identities=13%  Similarity=0.033  Sum_probs=184.7

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      ++.+.++......+..       +|. ...+..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++
T Consensus       257 ~~~~~A~~~~~~~~~~-------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (537)
T 3fp2_A          257 NNLLDAQVLLQESINL-------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN  328 (537)
T ss_dssp             TCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHhc-------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence            3444455544444433       566 77888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++...
T Consensus       329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCHH------HHHHHHHHHHHc----------CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205          197 PTVPL------YHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR  258 (301)
Q Consensus       197 p~~~~------~~~~la~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~  258 (301)
                      |+++.      .+..+|.++...          |+   +++|+.+|+++++.+|+ +..+++.++.++..+++..++.
T Consensus       409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~  482 (537)
T 3fp2_A          409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAI  482 (537)
T ss_dssp             HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHH
Confidence            76543      356678888888          88   99999999999999996 8899999999999988765543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.1e-22  Score=179.16  Aligned_cols=208  Identities=13%  Similarity=0.050  Sum_probs=171.5

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      ++.+.++......+..       +|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus       251 ~~~~~A~~~~~~~l~~-------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  322 (514)
T 2gw1_A          251 NDPLGAHEDIKKAIEL-------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ  322 (514)
T ss_dssp             SCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred             CCHHHHHHHHHHHHhh-------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence            3444444444444433       455 77788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++...
T Consensus       323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCHH------HHHHHHHHHHH---cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          197 PTVPL------YHLAYADVLYT---LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       197 p~~~~------~~~~la~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      |+++.      ++..+|.++..   .|+   +++|+..|++++..+|+ +..+++.++.++...++..+
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHH
Confidence            87754      88888888888   888   88888888888888885 88888888888888776544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.89  E-value=1.4e-23  Score=158.00  Aligned_cols=143  Identities=15%  Similarity=0.056  Sum_probs=129.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~  183 (301)
                      +|.++...|++++|+..+++++..+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            67888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhcccCCCchhHhhhHHHHHHH
Q 022205          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY-YASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      +|+.+|+++++++|+++.++..+|.++...|+   +++|... ++++++++|+ +..++...+.+...
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999   9877765 5899999996 88777665554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=1e-20  Score=159.20  Aligned_cols=191  Identities=14%  Similarity=0.056  Sum_probs=170.5

Q ss_pred             CchhHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMD-------CQCL-------DVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL  124 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  124 (301)
                      +|..+.+|..+|..+..       .|++       ++|+.+|++++. ..|++..+|..+|.++...|++++|...|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            67788888888887763       5886       899999999999 69999999999999999999999999999999


Q ss_pred             HhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHH
Q 022205          125 LEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       125 l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      +..+|.++. +|..+|.++...|++++|+..|+++++.+|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  205 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            999999987 999999999999999999999999999999998888877766544 799999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---cCCCchhHhhhHHHHHHHHHh
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL---TGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |..+|.++...|+   +++|+..|++++..   .|+.....|..++......|+
T Consensus       206 ~~~~~~~~~~~g~---~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          206 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHHHHHHTTCC---HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999   99999999999996   443356677777776666665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=2.4e-21  Score=174.50  Aligned_cols=209  Identities=17%  Similarity=0.066  Sum_probs=180.2

Q ss_pred             ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (301)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (301)
                      +.+.++......+..........+....++..+|..+...|++++|+..+++++...|+ +.++..+|.++...|++++|
T Consensus       217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A  295 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF  295 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence            34555666666665400000001112446778899999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      +..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  375 (537)
T 3fp2_A          296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP  375 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH------hhhHHHHHHHH
Q 022205          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA------LFGICLCSSAI  251 (301)
Q Consensus       198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~~l~~~~~~l  251 (301)
                      +++.++..+|.++...|+   +++|+..|+++++++|+ +...      ++.++.++...
T Consensus       376 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~a~~~~~~  431 (537)
T 3fp2_A          376 TLPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEEV-QEKIHVGIGPLIGKATILARQ  431 (537)
T ss_dssp             TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CSSCSSTTHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999   99999999999999885 3333      34455667666

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.5e-21  Score=170.55  Aligned_cols=220  Identities=15%  Similarity=0.082  Sum_probs=194.8

Q ss_pred             ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCc---------CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205           22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKR---------SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK   92 (301)
Q Consensus        22 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   92 (301)
                      ..|..++.......+. ......++......+...         ...+|....++..+|.++...|++++|+..+++++.
T Consensus       254 ~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  332 (514)
T 2gw1_A          254 LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE  332 (514)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3677777777766666 555555555554433221         223677788899999999999999999999999999


Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-----
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-----  167 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----  167 (301)
                      ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.     
T Consensus       333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  412 (514)
T 2gw1_A          333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI  412 (514)
T ss_dssp             TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred             hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998865     


Q ss_pred             -HHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205          168 -AWRELAEIYVS---LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (301)
Q Consensus       168 -~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  243 (301)
                       ++..+|.++..   .|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++|+ +..++..
T Consensus       413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~  488 (514)
T 2gw1_A          413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLART-MEEKLQA  488 (514)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-HHHHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccc-cHHHHHH
Confidence             99999999999   9999999999999999999999999999999999999   99999999999999996 7777666


Q ss_pred             HHH
Q 022205          244 ICL  246 (301)
Q Consensus       244 l~~  246 (301)
                      +..
T Consensus       489 ~~~  491 (514)
T 2gw1_A          489 ITF  491 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=2.2e-21  Score=172.89  Aligned_cols=183  Identities=10%  Similarity=-0.050  Sum_probs=169.2

Q ss_pred             cCCh-HHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---
Q 022205           36 VRRP-DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---  111 (301)
Q Consensus        36 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---  111 (301)
                      .++. ++++......+..       +|....++..+|.++...|++++|+.+|++++..+|+ ..++..+|.++...   
T Consensus       115 ~g~~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~  186 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD  186 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS
T ss_pred             ccccHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC
Confidence            3444 5555555555544       7888899999999999999999999999999999999 69999999999999   


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 022205          112 ------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFM---ADHDAWRELAE  174 (301)
Q Consensus       112 ------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~  174 (301)
                            |++++|+..|++++..+|+++.+|..+|.++...        |++++|+..|+++++.+|   .++.+|+++|.
T Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~  266 (474)
T 4abn_A          187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT  266 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred             ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence                  9999999999999999999999999999999999        999999999999999999   99999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      +|...|++++|+.+|++++.++|+++.++..++.++..+|+   +++|+..+.+.
T Consensus       267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~  318 (474)
T 4abn_A          267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT  318 (474)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence            99999999999999999999999999999999999999999   99999877553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.88  E-value=4.1e-21  Score=154.27  Aligned_cols=169  Identities=12%  Similarity=0.001  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKR  137 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~  137 (301)
                      +..++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|++++..+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            45788889999999999999999999999999764   68999999999999999999999999999999875   7889


Q ss_pred             HHHHHHH------------------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccH
Q 022205          138 RVAIAKA------------------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMY  182 (301)
Q Consensus       138 l~~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~  182 (301)
                      +|.++..                  .|++++|+..|+++++.+|+++.++                 ..+|.++...|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9998876                  5789999999999999999997554                 5789999999999


Q ss_pred             HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          183 KQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       183 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++|+..|+++++..|+++   .++..+|.++..+|+   +++|+..++++....|+
T Consensus       164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC
Confidence            999999999999999986   679999999999999   99999999999998886

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=2.6e-21  Score=140.95  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      .+|+.+.++..+|..++..|++++|+..|+++++.+|.++.+|+++|.++...|++++|+..|+++++++|+++.++..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  245 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~  245 (301)
                      |.++..+|+   +++|+..|+++++++|+ +..++.+++
T Consensus        88 g~~~~~~~~---~~~A~~~~~~al~l~P~-~~~a~~~l~  122 (126)
T 4gco_A           88 AACLVAMRE---WSKAQRAYEDALQVDPS-NEEAREGVR  122 (126)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence            444444444   44444444444444442 444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=1.6e-21  Score=150.52  Aligned_cols=164  Identities=12%  Similarity=0.029  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ...+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999999999999 8877666665533


Q ss_pred             -HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHH
Q 022205          144 -AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       144 -~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~  220 (301)
                       ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+.  +.++..+|.++...|+   .+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~---~~  161 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ---GN  161 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS---SC
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC---CC
Confidence             33455578999999999999999999999999999999999999999999999876  6699999999999999   99


Q ss_pred             HHHHHHHHHhc
Q 022205          221 LAKKYYASTID  231 (301)
Q Consensus       221 ~A~~~~~~al~  231 (301)
                      +|+..|++++.
T Consensus       162 ~A~~~y~~al~  172 (176)
T 2r5s_A          162 AIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=3.6e-21  Score=140.23  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=115.6

Q ss_pred             HHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 022205           90 LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW  169 (301)
Q Consensus        90 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  169 (301)
                      +..++|+.+..+..+|..++..|+|++|+..|++++..+|.++.++..+|.++..+|++++|+..|+++++++|+++.+|
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      +.+|.++...|++++|+.+|+++++++|+++.++..++.++
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=1.3e-19  Score=148.69  Aligned_cols=159  Identities=14%  Similarity=0.060  Sum_probs=147.0

Q ss_pred             HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 022205           92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---  165 (301)
Q Consensus        92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---  165 (301)
                      ...|.++..++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+++++.+|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4568899999999999999999999999999999999999   8899999999999999999999999999998865   


Q ss_pred             HHHHHHHHHHHHH--------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHH
Q 022205          166 HDAWRELAEIYVS--------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNIL  220 (301)
Q Consensus       166 ~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~~~  220 (301)
                      +.+++.+|.++..        .|++++|+..|++++...|+++.+.                 +.+|.++...|+   ++
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~---~~  165 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL---YE  165 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---HH
Confidence            6789999999999        9999999999999999999987655                 888999999999   99


Q ss_pred             HHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205          221 LAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       221 ~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~  253 (301)
                      +|+..|+++++..|+  ....+++.++.++..+|+
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  200 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE  200 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence            999999999999996  246789999999999976

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.86  E-value=1.6e-20  Score=156.50  Aligned_cols=168  Identities=14%  Similarity=-0.004  Sum_probs=150.9

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      |.....+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999977777777777


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCc
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDN  218 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~  218 (301)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++  ..++..++.++...|+   
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~---  270 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT---  270 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT---
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC---
Confidence            78888889999999999999999999999999999999999999999999999999988  8889999999999999   


Q ss_pred             HHHHHHHHHHHhc
Q 022205          219 ILLAKKYYASTID  231 (301)
Q Consensus       219 ~~~A~~~~~~al~  231 (301)
                      .++|...|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.86  E-value=2.1e-19  Score=148.25  Aligned_cols=176  Identities=11%  Similarity=-0.014  Sum_probs=117.3

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      |.++.++..+|..+...|++++|+.+|+++++  |+++.++..+|.++..    .+++++|+.+|++++..+  ++.++.
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            44555666667777777777777777777666  5666666777777777    677777777777776654  566667


Q ss_pred             HHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          137 RRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       137 ~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      .+|.++..    .+++++|+.+|+++++.+  ++.+++.+|.+|..    .+++++|+.+|++++..+  ++.++..+|.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~  154 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence            77777776    777777777777776653  56667777777776    677777777777776654  4566666777


Q ss_pred             HHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          209 VLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       209 ~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      ++..    .++   +++|+.+|+++++..   +..+++.++.++..
T Consensus       155 ~~~~~~~~~~~---~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          155 LYDAGRGTPKD---LKKALASYDKACDLK---DSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCC---HHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            7666    666   777777777766652   34566666666655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=6.4e-21  Score=177.00  Aligned_cols=195  Identities=14%  Similarity=-0.002  Sum_probs=166.7

Q ss_pred             hccCChHHHHHHHHHHhcC-CCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Q 022205           34 LKVRRPDKVLRHGLSILND-PKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (301)
                      ...++.++++......+.. .......+|+...++..+|.+++..|++++|+..++++++.+|++..+++.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            4556667777776666611 011223478888899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+|+++|.++...|++++|+.+|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHH
Q 022205          193 ILSQPTVPLYHLAYADVLYTLGG-----VDNILLAKKYYAST  229 (301)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~~~-----~~~~~~A~~~~~~a  229 (301)
                      ++++|++..++.++|.++...++     .+.+++|...+...
T Consensus       561 l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          561 PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999877654     12255555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=8.2e-19  Score=155.67  Aligned_cols=213  Identities=12%  Similarity=-0.005  Sum_probs=175.8

Q ss_pred             CChHHHHHHHHHHhc--CCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHH
Q 022205           37 RRPDKVLRHGLSILN--DPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI  106 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~  106 (301)
                      ++.++++......+.  ........+|.....|.++|.++...|++++|+.++++++...        +..+.++..+|.
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~  144 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW  144 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence            455555554444321  1012233466778889999999999999999999999998863        245677777787


Q ss_pred             HHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Q 022205          107 LLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--  179 (301)
Q Consensus       107 ~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--  179 (301)
                      ++...  +++++|+.+|++++..+|+++.++..++.++..   .++.++|+..++++++++|+++.++..+|..+...  
T Consensus       145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~  224 (472)
T 4g1t_A          145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE  224 (472)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence            66654  579999999999999999999999999988654   57788999999999999999999999998777654  


Q ss_pred             --ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          180 --QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       180 --~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                        |++++|+.++++++..+|+++.++..+|.++...|+   +++|+..|.++++.+|+ +..+++.++.++.....
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence              678899999999999999999999999999999999   99999999999999996 99999999999876554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.86  E-value=1.7e-20  Score=170.79  Aligned_cols=165  Identities=12%  Similarity=-0.049  Sum_probs=139.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccc
Q 022205          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---GGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~~~~A~~~~~~al~~~  233 (301)
                      ++++.+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...   |+   +++|...|+++++.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999   77   999999999999999


Q ss_pred             CCCchhHhhhHH
Q 022205          234 GGKNTKALFGIC  245 (301)
Q Consensus       234 p~~~~~~~~~l~  245 (301)
                      |. +...++.++
T Consensus       159 p~-~~~~~~~l~  169 (568)
T 2vsy_A          159 VG-AVEPFAFLS  169 (568)
T ss_dssp             CC-CSCHHHHTT
T ss_pred             Cc-ccChHHHhC
Confidence            96 665554443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=156.90  Aligned_cols=174  Identities=13%  Similarity=0.139  Sum_probs=157.7

Q ss_pred             CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 022205           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-  127 (301)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  127 (301)
                      ..-.|..+.++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++.. 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3446788999999999999999999999999999995        5677788999999999999999999999999986 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                             +|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                   35567799999999999999999999999999885        555678999999999999999999999999


Q ss_pred             Hhh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          193 ILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       193 l~~--------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +..        .|....++..+|.++...|+   +++|+.+|+++++..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGK---FKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence            988        66667889999999999999   999999999999764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=2.3e-21  Score=145.51  Aligned_cols=116  Identities=14%  Similarity=-0.040  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      +-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+.+|++++.++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33456777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |+++.+++++|.++..+|+   +++|+.+|++++++.|+
T Consensus       101 P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSND  136 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            9999999999999999999   99999999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=3.3e-20  Score=147.14  Aligned_cols=156  Identities=13%  Similarity=0.008  Sum_probs=136.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR----------------RVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      ++..++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (301)
Q Consensus       161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (301)
                      .+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.+++..|+. ....+...|.+++..+|  ...+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLSSPTK--MQYA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CCCH--HHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCCc--hhHH
Confidence            99999999999999999999999999999999999999999999999999887641 15667888888775544  4457


Q ss_pred             hhhHHHHHHHHHhhh
Q 022205          241 LFGICLCSSAIAQLT  255 (301)
Q Consensus       241 ~~~l~~~~~~l~~~~  255 (301)
                      ++.++.++..+++..
T Consensus       160 ~~~~g~~~~~~~~~~  174 (208)
T 3urz_A          160 RYRDGLSKLFTTRYE  174 (208)
T ss_dssp             HHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHccCHH
Confidence            788888888877643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.85  E-value=8e-21  Score=156.32  Aligned_cols=165  Identities=16%  Similarity=0.037  Sum_probs=148.7

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhC----CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           71 SIAAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      +......|++++|+..+++++...    |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            333445688999999999999874    4677899999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~  226 (301)
                      ++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++.++|+++.....++.+ ...|+   +++|+..|
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~  167 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVL  167 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998776666544 66688   99999999


Q ss_pred             HHHhcccCCCchhH
Q 022205          227 ASTIDLTGGKNTKA  240 (301)
Q Consensus       227 ~~al~~~p~~~~~~  240 (301)
                      .+++...|+ +...
T Consensus       168 ~~~~~~~~~-~~~~  180 (275)
T 1xnf_A          168 KQHFEKSDK-EQWG  180 (275)
T ss_dssp             HHHHHHSCC-CSTH
T ss_pred             HHHHhcCCc-chHH
Confidence            999998885 4433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=9.2e-19  Score=147.24  Aligned_cols=174  Identities=9%  Similarity=-0.060  Sum_probs=162.0

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR-VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      ++|+...+|..+|..+...|++++|..+|+++++..|.++. +|..+|.++...|++++|+..|++++..+|.+..++..
T Consensus        94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A           94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            47788889999999999999999999999999999999886 89999999999999999999999999999999888887


Q ss_pred             HHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHH
Q 022205          138 RVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QP-TVPLYHLAYADVLYT  212 (301)
Q Consensus       138 l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~  212 (301)
                      .+.+... .|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|++++..   .| +...+|..++..+..
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            7766544 799999999999999999999999999999999999999999999999995   55 378899999999999


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCC
Q 022205          213 LGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .|+   ++.|...+.++++..|+
T Consensus       254 ~g~---~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          254 IGD---LASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSC---HHHHHHHHHHHHHHTTT
T ss_pred             cCC---HHHHHHHHHHHHHHccc
Confidence            999   99999999999999996

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=1.5e-19  Score=150.95  Aligned_cols=169  Identities=14%  Similarity=0.034  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  131 (301)
                      ...|...+.++...|++++|+.++.+++...+      ....++..+|.++...|++++|+.+|++++...|..      
T Consensus        37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  116 (292)
T 1qqe_A           37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (292)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34566778888999999999999999998753      225688999999999999999999999999977643      


Q ss_pred             HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH---
Q 022205          132 PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---  201 (301)
Q Consensus       132 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---  201 (301)
                      ..++..+|.+|... |++++|+.+|++++++.|.+      ..++..+|.++...|++++|+.+|++++.+.|+++.   
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            45889999999996 99999999999999998865      567899999999999999999999999999987653   


Q ss_pred             ----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          202 ----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       202 ----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                          ++.++|.++..+|+   +++|+.+|++++.++|+
T Consensus       197 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence                67899999999999   99999999999999996

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.3e-19  Score=159.29  Aligned_cols=238  Identities=15%  Similarity=0.119  Sum_probs=177.1

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHh-----cCCC-------CcCcCCchhHHHHHHHHHHHHh----CCChHHHHHH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSIL-----NDPK-------KRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDC   86 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~   86 (301)
                      .|+.++++....++.+++....++....     ....       ....++|....++..++..+..    .|++++|+.+
T Consensus       156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~  235 (472)
T 4g1t_A          156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL  235 (472)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            5777777777777777765555444321     1111       1123467777777777766554    3677889999


Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------------------CC
Q 022205           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-------------------GN  147 (301)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------------------g~  147 (301)
                      +++++...|+.+.++..+|.++...|++++|+..|++++..+|+++.++..+|.+|...                   +.
T Consensus       236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~  315 (472)
T 4g1t_A          236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL  315 (472)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999887643                   33


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHHcCCCCcHHHHH
Q 022205          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---YHLAYADV-LYTLGGVDNILLAK  223 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~~~~~~~~~A~  223 (301)
                      +++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.++|++..   ++..+|.+ +...|+   +++|+
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ai  392 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC---EDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC---HHHHH
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence            678899999999999999999999999999999999999999999999887654   45666654 456788   99999


Q ss_pred             HHHHHHhcccCC-----------------------CchhHhhhHHHHHHHHHhhhccCCcccc
Q 022205          224 KYYASTIDLTGG-----------------------KNTKALFGICLCSSAIAQLTKGRNKEDK  263 (301)
Q Consensus       224 ~~~~~al~~~p~-----------------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~  263 (301)
                      .+|+++++++|.                       .+..+++.+|.++...|+..++.....+
T Consensus       393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999998877543                       2556777788888877776655544433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=1.9e-19  Score=138.77  Aligned_cols=153  Identities=16%  Similarity=0.116  Sum_probs=146.9

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      ....+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ...|++++|+.++++++...|.++.++..+|.++...|+   +++|+.+|+++++.+|. +..+++.++.++...++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999   99999999999999996 89999999999988775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.84  E-value=2.1e-18  Score=143.76  Aligned_cols=219  Identities=11%  Similarity=0.068  Sum_probs=190.8

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCchhh
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRV  100 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~  100 (301)
                      .+..+++..+..+ ..+++++.....++.-       +|+..++|...+.++...|  ++++++.+++.++..+|++..+
T Consensus        34 ~~~~~~~a~~~~~-e~s~~aL~~t~~~L~~-------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a  105 (306)
T 3dra_A           34 QIMGLLLALMKAE-EYSERALHITELGINE-------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI  105 (306)
T ss_dssp             HHHHHHHHHHHTT-CCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence            3555666555544 5556788888877766       8999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHhcCCCHHHHHH
Q 022205          101 GRLEGILL----EAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--TAIEWLNKYLETFMADHDAWRE  171 (301)
Q Consensus       101 ~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~  171 (301)
                      |..++.++    ...   +++++++.++.+++..+|.+..+|...+.+....|.++  +++.++.++++.+|.+..+|..
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~  185 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH  185 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999    766   78999999999999999999999999999999999998  9999999999999999999999


Q ss_pred             HHHHHHHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---CCCchhHhh
Q 022205          172 LAEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---GGKNTKALF  242 (301)
Q Consensus       172 lg~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~  242 (301)
                      .+.+....+.      +++++.++.+++..+|.+..+|..++.++...|+  ..+....++.+++.++   | .+..++.
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~-~s~~al~  262 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR--SITQLEEFSLQFVDLEKDQV-TSSFALE  262 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--CGGGGHHHHHTTEEGGGTEE-SCHHHHH
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC--ChHHHHHHHHHHHhccCCCC-CCHHHHH
Confidence            9999999887      9999999999999999999999999999999987  2344556888888876   6 4888888


Q ss_pred             hHHHHHHHHH
Q 022205          243 GICLCSSAIA  252 (301)
Q Consensus       243 ~l~~~~~~l~  252 (301)
                      .++.++.+.+
T Consensus       263 ~la~~~~~~~  272 (306)
T 3dra_A          263 TLAKIYTQQK  272 (306)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHccC
Confidence            8988887544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.84  E-value=1.6e-19  Score=148.61  Aligned_cols=170  Identities=18%  Similarity=0.148  Sum_probs=152.0

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----  127 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----  127 (301)
                      .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..|++++..    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999873        566778999999999999999999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                          +|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|++++.+
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                4667789999999999999999999999999998        6667789999999999999999999999999976


Q ss_pred             C-------------------------------------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205          196 Q-------------------------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (301)
Q Consensus       196 ~-------------------------------------------------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~  226 (301)
                      .                                                 |..+.++..+|.++...|+   +++|+.+|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~  275 (283)
T 3edt_B          199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLE  275 (283)
T ss_dssp             HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence            2                                                 3445578888888888888   88898888


Q ss_pred             HHHhcc
Q 022205          227 ASTIDL  232 (301)
Q Consensus       227 ~~al~~  232 (301)
                      +++++.
T Consensus       276 ~~al~~  281 (283)
T 3edt_B          276 DCASRN  281 (283)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            888875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=4e-18  Score=140.56  Aligned_cols=191  Identities=13%  Similarity=0.001  Sum_probs=169.1

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH--
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA--  110 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--  110 (301)
                      .+.+.++......+.         |....++..+|.++..    .+++++|+.+++++++..  ++.++..+|.++..  
T Consensus        20 ~~~~~A~~~~~~a~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~   88 (273)
T 1ouv_A           20 KDFTQAKKYFEKACD---------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQ   88 (273)
T ss_dssp             TCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCC
Confidence            466666666665554         2445788899999999    999999999999999864  78899999999999  


Q ss_pred             --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cc
Q 022205          111 --KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQ  180 (301)
Q Consensus       111 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~  180 (301)
                        .+++++|+.+|++++..+  ++.++..+|.++..    .+++++|+.+|+++++.+  ++.++..+|.++..    .+
T Consensus        89 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~  164 (273)
T 1ouv_A           89 GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK  164 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred             CcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC
Confidence              999999999999999874  88999999999999    999999999999999976  68899999999999    99


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      ++++|+.+|++++..  .++.++..+|.++..    .++   +++|+.+|+++++..|   ..+++.++.++..
T Consensus       165 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~  230 (273)
T 1ouv_A          165 DLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN---FKEALARYSKACELEN---GGGCFNLGAMQYN  230 (273)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC---HHHHHHHHHHHHc
Confidence            999999999999987  468899999999999    899   9999999999999865   5678888887765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.83  E-value=5.7e-18  Score=142.02  Aligned_cols=219  Identities=14%  Similarity=0.098  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHh
Q 022205           24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQ   93 (301)
Q Consensus        24 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~   93 (301)
                      +...+...+. ....+++++.....++..       +|++.++|...+.+....+.          +++++.+++.++..
T Consensus        32 ~~~~~~~~~~-~~e~s~eaL~~t~~~L~~-------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~  103 (331)
T 3dss_A           32 ATQAVFQKRQ-AGELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  103 (331)
T ss_dssp             HHHHHHHHHH-TTCCSHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence            3333433333 345667788888888877       89999999888877766654          68999999999999


Q ss_pred             CCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHH
Q 022205           94 FPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWR  170 (301)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~  170 (301)
                      +|++..+|..++.++...+  .+++++.++.+++..+|.|..+|...+.+....|. +++++.++.++++.+|.+..+|.
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            9999999999999999998  49999999999999999999999999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCC-------CcHHHHHHHHHH
Q 022205          171 ELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGV-------DNILLAKKYYAS  228 (301)
Q Consensus       171 ~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~-------~~~~~A~~~~~~  228 (301)
                      .++.++...              +.+++++.++.+++..+|++..+|+.+..++... |..       +-++++++.+.+
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            999999887              6799999999999999999999998666555554 210       228999999999


Q ss_pred             HhcccCCCchhHhhhHHHHHHHH
Q 022205          229 TIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       229 al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ++++.|+ +.+.+.++++....+
T Consensus       264 lle~~pd-~~w~l~~~~~~~~~~  285 (331)
T 3dss_A          264 LQELEPE-NKWCLLTIILLMRAL  285 (331)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHhhCcc-cchHHHHHHHHHHhh
Confidence            9999997 777666666544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=2.3e-20  Score=140.06  Aligned_cols=116  Identities=15%  Similarity=0.002  Sum_probs=101.6

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (301)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (301)
                      ..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            34566677788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      ++.+|+++|.++...|++++|+.+|++++.+.|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999888765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.83  E-value=2e-19  Score=156.80  Aligned_cols=195  Identities=11%  Similarity=-0.001  Sum_probs=161.2

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPL  130 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~  130 (301)
                      +.....+..+|..++..|++++|+.++++++...|+++    .++..+|.++...|++++|+..|++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            45666777889999999999999999999999998876    57888999999999999999999999886      566


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHccc-----------------HHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQM-----------------YKQAAF  187 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~~~-----------------~~~A~~  187 (301)
                      ...++..+|.++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6778999999999999999999999999888      45557788999999999999                 999999


Q ss_pred             HHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-Cc----hhHhhhHHHHHHHHHhhhc
Q 022205          188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KN----TKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       188 ~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~~l~~~~~~l~~~~~  256 (301)
                      ++++++.+.      |....++..+|.++...|+   +++|+.+|++++++.|. .+    ..+++.++.++...++..+
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD---FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence            999988763      2334578889999999999   99999999999988774 11    2367778887777776554


Q ss_pred             cC
Q 022205          257 GR  258 (301)
Q Consensus       257 ~~  258 (301)
                      +.
T Consensus       282 A~  283 (411)
T 4a1s_A          282 AA  283 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.8e-19  Score=149.44  Aligned_cols=198  Identities=18%  Similarity=0.144  Sum_probs=165.4

Q ss_pred             ccCChHHHHHHHHHHhcCCC-CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHH
Q 022205           35 KVRRPDKVLRHGLSILNDPK-KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEG  105 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a  105 (301)
                      ..++.+.++......+.... ......|....++..+|.++...|++++|+.++++++...        |....++..+|
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  118 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA  118 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34566666666666553100 0011256788899999999999999999999999999873        56677899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAW  169 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~  169 (301)
                      .++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++..        .|..+.++
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  198 (311)
T 3nf1_A          119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK  198 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999863        556678999999999999999999999999998        66667889


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhh-------------------------------------------------CCCCH
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELILS-------------------------------------------------QPTVP  200 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~  200 (301)
                      ..+|.++...|++++|+.+|++++..                                                 .|..+
T Consensus       199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  278 (311)
T 3nf1_A          199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT  278 (311)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence            99999999999999999999999974                                                 35556


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .++..+|.++...|+   +++|+.+|++++++.|.
T Consensus       279 ~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          279 TTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence            788889999999999   99999999999988773

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=1.2e-19  Score=136.02  Aligned_cols=129  Identities=13%  Similarity=-0.016  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      -..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34678888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      +++.+++.+|.++..+|+   +++|+.+|+++++++|+ +.........+...
T Consensus        87 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIAN-XPEFXELSTRVSSM  135 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC-CCcchHHHHHHHHH
Confidence            999999999999999999   99999999999999885 54443333333333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.82  E-value=2e-19  Score=156.76  Aligned_cols=218  Identities=13%  Similarity=0.049  Sum_probs=171.5

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCch-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGIL  107 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~  107 (301)
                      ..++.+.++......+..    .+.++. ...++..+|.++...|++++|+.++++++..      .|....++..+|.+
T Consensus        60 ~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            455667777776666643    111222 3357888899999999999999999999887      45667788899999


Q ss_pred             HHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHhc--
Q 022205          108 LEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQGN-----------------FPTAIEWLNKYLETF--  162 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~--  162 (301)
                      +...|++++|+..|++++..      .|....++..+|.++...|+                 +++|+.+++++++..  
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~  215 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD  215 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999886      55566788999999999999                 999999999888764  


Q ss_pred             ----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          163 ----MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       163 ----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                          |....++..+|.++...|++++|+.+|++++.+.|....      ++..+|.++...|+   +++|+.+|++++.+
T Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  292 (411)
T 4a1s_A          216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ---FEDAAEHYKRTLAL  292 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence                233558889999999999999999999999987764332      78889999999999   99999999999988


Q ss_pred             cCC-----CchhHhhhHHHHHHHHHhhhccCC
Q 022205          233 TGG-----KNTKALFGICLCSSAIAQLTKGRN  259 (301)
Q Consensus       233 ~p~-----~~~~~~~~l~~~~~~l~~~~~~~~  259 (301)
                      .|.     ....+++.++.++...++..++..
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIE  324 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            774     125677788888888777555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.82  E-value=1.9e-19  Score=138.81  Aligned_cols=156  Identities=13%  Similarity=-0.007  Sum_probs=137.9

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      |......+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            445567888999999999999999999999999999999999999999999999999999999999999 8887766665


Q ss_pred             HHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhhHHHHHHHHH
Q 022205          175 IYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIA  252 (301)
Q Consensus       175 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l~  252 (301)
                      +.. ..+....|+..+++++..+|+++.+++.+|.++...|+   +++|+..|+++++.+|+ .+..+++.++.++..+|
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            543 33344568999999999999999999999999999999   99999999999999996 34669999999999988


Q ss_pred             hh
Q 022205          253 QL  254 (301)
Q Consensus       253 ~~  254 (301)
                      +.
T Consensus       159 ~~  160 (176)
T 2r5s_A          159 QG  160 (176)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.81  E-value=4e-19  Score=154.07  Aligned_cols=187  Identities=15%  Similarity=0.109  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P  132 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~  132 (301)
                      .++..+|.+++..|++++|+.++++++...      |....++..+|.++...|++++|+..+++++...|..      .
T Consensus        48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  127 (406)
T 3sf4_A           48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  127 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence            455555666666666666666666555442      2234455555666666666666666666655543322      2


Q ss_pred             HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcccHHHHH
Q 022205          133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA  186 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~~~~~~A~  186 (301)
                      .++..+|.++...|+                    +++|+..+++++..      .|....++..+|.++...|++++|+
T Consensus       128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  207 (406)
T 3sf4_A          128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV  207 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence            355555666666666                    55666655555554      2222345555566666666666666


Q ss_pred             HHHHHHHhhCCCCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc------hhHhhhHHHHHHHHHhh
Q 022205          187 FCYEELILSQPTVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN------TKALFGICLCSSAIAQL  254 (301)
Q Consensus       187 ~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~l~~~~~~l~~~  254 (301)
                      .++++++.+.|...      .++..+|.++...|+   +++|+.+|++++.+.|. .      ..++..++.++...++.
T Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~  283 (406)
T 3sf4_A          208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLARQ-LKDRAVEAQSCYSLGNTYTLLQDY  283 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHHHHHHHhCcH
Confidence            66666555443322      255555666666666   66666666665555442 1      34445555555554443


Q ss_pred             h
Q 022205          255 T  255 (301)
Q Consensus       255 ~  255 (301)
                      .
T Consensus       284 ~  284 (406)
T 3sf4_A          284 E  284 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.81  E-value=1.4e-18  Score=139.51  Aligned_cols=156  Identities=10%  Similarity=0.048  Sum_probs=139.8

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR  170 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~  170 (301)
                      ++..++.+|..+...|++++|+..|++++...|+++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            456788999999999999999999999999998874   68999999999999999999999999999999864   789


Q ss_pred             HHHHHHHH------------------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCC
Q 022205          171 ELAEIYVS------------------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGG  215 (301)
Q Consensus       171 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~  215 (301)
                      .+|.++..                  .|++++|+..|++++...|+++.++                 ..+|.+++..|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999886                  5799999999999999999987554                 578999999999


Q ss_pred             CCcHHHHHHHHHHHhcccCCC--chhHhhhHHHHHHHHHhhh
Q 022205          216 VDNILLAKKYYASTIDLTGGK--NTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       216 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~l~~~~~~l~~~~  255 (301)
                         +++|+..|+++++..|+.  ...+++.++.++..+++..
T Consensus       163 ---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          163 ---WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             ---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence               999999999999999961  2378999999999998733

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.81  E-value=1.6e-18  Score=144.42  Aligned_cols=158  Identities=8%  Similarity=-0.081  Sum_probs=149.5

Q ss_pred             HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 022205           92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (301)
Q Consensus        92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (301)
                      ...|++...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+..
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999977777778


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc--hhHhhhHHHHHH
Q 022205          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN--TKALFGICLCSS  249 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~l~~~~~  249 (301)
                      .+..+...++.++|+..|++++..+|+++.+++.+|.++...|+   +++|+..|+++++.+|+ +  ..++..++.++.
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLT-AADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccc-cccchHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999999   99999999999999997 5  889999999999


Q ss_pred             HHHh
Q 022205          250 AIAQ  253 (301)
Q Consensus       250 ~l~~  253 (301)
                      .+|+
T Consensus       267 ~~g~  270 (287)
T 3qou_A          267 ALGT  270 (287)
T ss_dssp             HHCT
T ss_pred             HcCC
Confidence            9886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.81  E-value=8.5e-19  Score=151.78  Aligned_cols=165  Identities=13%  Similarity=0.002  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhC---C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF---P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPV  133 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~  133 (301)
                      +...|..++..|++++|+.++++++...   |   ..+.++..+|.++...|++++|+.++++++...+.       ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            3347999999999999999999999862   3   34578999999999999999999999999986433       345


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hC-CCCHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQ-PTVPL  201 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~  201 (301)
                      ++..+|.++...|++++|+.+|+++++..|..      ..++.++|.+|...|++++|+.+|++++.     .+ |..+.
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            89999999999999999999999999886644      25899999999999999999999999998     46 77788


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ++..+|.++...|+   +++|..+|++++.+.+
T Consensus       266 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          266 AYFLITQIHYKLGK---IDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence            99999999999999   9999999999999854

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=8e-19  Score=146.50  Aligned_cols=183  Identities=14%  Similarity=0.039  Sum_probs=149.7

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC---
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD---  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---  131 (301)
                      ....++.++|.++...|++++|+.++++++...|..      ..++..+|.++... |++++|+.+|++++...|.+   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            356789999999999999999999999999987632      45788999999996 99999999999999987754   


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                         ..++..+|.++...|++++|+.+|+++++..|.++.       ++..+|.++...|++++|+.+|++++.++|+.+.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               457899999999999999999999999999987653       6789999999999999999999999999998765


Q ss_pred             H-----HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          202 Y-----HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       202 ~-----~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                      .     +..++..+ ..++.+.+++|+..|.+++.++|. +...+..+-.
T Consensus       235 ~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l~~~-~~~~~~~~k~  282 (292)
T 1qqe_A          235 SRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRLDKW-KITILNKIKE  282 (292)
T ss_dssp             ---HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCCCHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCccHHH-HHHHHHHHHH
Confidence            3     34455544 334445599999999999999995 5555544443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.81  E-value=5.9e-19  Score=148.59  Aligned_cols=245  Identities=14%  Similarity=0.069  Sum_probs=177.5

Q ss_pred             hccCChHHHHHHHHHHhcCCCCcCcCCch-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHH
Q 022205           34 LKVRRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGI  106 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~  106 (301)
                      ...++.+.++......+..    .+.++. ...++..+|.++...|++++|+.++++++..      .|....++..+|.
T Consensus        16 ~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           16 CKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            3455666666666666543    111222 3567888899999999999999999988876      2345667888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHH
Q 022205          107 LLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLE  160 (301)
Q Consensus       107 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~  160 (301)
                      ++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|+..+++++.
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865433      3388889999999999                    8999999988887


Q ss_pred             hc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          161 TF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       161 ~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      ..      |..+.++..+|.++...|++++|+.++++++.+.|..      ..++..+|.++...|+   +++|+.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  248 (338)
T 3ro2_A          172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKK  248 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence            62      3335678889999999999999999999998775433      2378889999999999   9999999999


Q ss_pred             HhcccCC-C----chhHhhhHHHHHHHHHhhhccCCcccccchH--------HHHHHHHHHHHHHHhhCC
Q 022205          229 TIDLTGG-K----NTKALFGICLCSSAIAQLTKGRNKEDKESPE--------LQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       229 al~~~p~-~----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~  285 (301)
                      ++.+.|. .    ...++..++.++...++..++.....+....        ....+...+..+|...+.
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            9988664 1    1667778888888777755543332222111        112234456666666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.80  E-value=6e-19  Score=131.16  Aligned_cols=130  Identities=15%  Similarity=0.016  Sum_probs=109.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      ..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      ++.+++.+|.++..+|+   +++|+.+|+++++++|+ +.........+...+.
T Consensus        85 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGD---LDGAESGFYSARALAAA-QPAHEALAARAGAMLE  134 (142)
T ss_dssp             CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT-CGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999985 5544444444444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.80  E-value=2.5e-19  Score=134.25  Aligned_cols=119  Identities=13%  Similarity=-0.003  Sum_probs=109.9

Q ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (301)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (301)
                      ..+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ++.+++.+|.++...|++++|+.+|++++.++|+++...
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            999999999999999999999999999999998876553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=150.81  Aligned_cols=193  Identities=12%  Similarity=-0.029  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDP  132 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~  132 (301)
                      ....+...|..++..|++++|+.++++++...|.++    .++..+|.++...|++++|+..+++++..      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            455778889999999999999999999999999874    57889999999999999999999999875      34456


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHccc--------------------HHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAA  186 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~--------------------~~~A~  186 (301)
                      .++..+|.++...|++++|+..+++++...|..      +.++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            789999999999999999999999999987643      4589999999999999                    99999


Q ss_pred             HHHHHHHhh------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----chhHhhhHHHHHHHHHhhh
Q 022205          187 FCYEELILS------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       187 ~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~~l~~~~~~l~~~~  255 (301)
                      .++++++.+      .|....++..+|.++...|+   +++|+.+|++++++.|. .    ...++..++.++..+++..
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999876      33345689999999999999   99999999999998764 1    1337788888888888765


Q ss_pred             ccC
Q 022205          256 KGR  258 (301)
Q Consensus       256 ~~~  258 (301)
                      ++.
T Consensus       245 ~A~  247 (406)
T 3sf4_A          245 TAS  247 (406)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.80  E-value=5.7e-18  Score=123.35  Aligned_cols=133  Identities=23%  Similarity=0.261  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      ++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            56677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |++++|+.++++++...|.++.++..+|.++...|+   +++|..+|.+++..+|+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence            888888888888888888888888888888888888   88888888888887774

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.80  E-value=2.6e-17  Score=137.23  Aligned_cols=216  Identities=11%  Similarity=0.015  Sum_probs=183.1

Q ss_pred             HHHHHHHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---
Q 022205           69 QVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIA---  142 (301)
Q Consensus        69 ~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---  142 (301)
                      ......+..|.+ ++|+.++.+++..+|++..+|..++.++...|  ++++++..+..++..+|.+..+|...+.++   
T Consensus        37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence            334445556665 68999999999999999999999999999999  999999999999999999999999999999   


Q ss_pred             -HHc---CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          143 -KAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--QAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       143 -~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                       ...   +++++++.++.++++.+|.+..+|...+.+....|.++  +++.++.+++..+|.|..+|...+.+....+..
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred             HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence             777   78999999999999999999999999999999999998  999999999999999999999999999887641


Q ss_pred             ---CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc------chHHHHHHHHHHHHHHHhhCC
Q 022205          217 ---DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE------SPELQSLAAAALEKDYKQRAP  285 (301)
Q Consensus       217 ---~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~  285 (301)
                         +.++++++++.+++..+|. +..+|+.++.+...++............      ...-+..+...+.++|.+.+.
T Consensus       197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~  273 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK  273 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred             chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence               1289999999999999996 9999999998888876532211111011      012345677888888886655

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.80  E-value=1.9e-18  Score=145.46  Aligned_cols=193  Identities=12%  Similarity=-0.036  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDP  132 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~  132 (301)
                      ....+...|..++..|++++|+.++++++...|+++    .++..+|.++...|++++|+..+++++..      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            344567789999999999999999999999999874    67889999999999999999999999876      44556


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHccc--------------------HHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAA  186 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~--------------------~~~A~  186 (301)
                      .++..+|.++...|++++|+..++++++..|..      ..++..+|.++...|+                    +++|+
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            789999999999999999999999999987644      3488999999999999                    99999


Q ss_pred             HHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----chhHhhhHHHHHHHHHhhh
Q 022205          187 FCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       187 ~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~~l~~~~~~l~~~~  255 (301)
                      .++++++.+.      |....++..+|.++...|+   +++|+.+|++++++.|. .    ...++..++.++...++..
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  240 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  240 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence            9999998762      3335688999999999999   99999999999988664 1    2347788888888888765


Q ss_pred             ccC
Q 022205          256 KGR  258 (301)
Q Consensus       256 ~~~  258 (301)
                      .+.
T Consensus       241 ~A~  243 (338)
T 3ro2_A          241 TAS  243 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=4.8e-19  Score=145.75  Aligned_cols=156  Identities=13%  Similarity=0.118  Sum_probs=139.0

Q ss_pred             HhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 022205           75 MDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRR  138 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l  138 (301)
                      ...|++++|+.++++++...        |....++..+|.++...|++++|+..|++++..        +|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45688888888888888742        556788999999999999999999999999976        46667799999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHH
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLY  202 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  202 (301)
                      |.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++.+        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999998        4666789999999999999999999999999998        6667789


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +..+|.++...|+   +++|+.+|++++++.
T Consensus       172 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          172 KNNLASCYLKQGK---YQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence            9999999999999   999999999999873

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.79  E-value=1.7e-17  Score=120.82  Aligned_cols=135  Identities=21%  Similarity=0.193  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (301)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  144 (301)
                      .++..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  199 (301)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++..+|++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999999998863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.79  E-value=2.5e-19  Score=152.58  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=142.6

Q ss_pred             hCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 022205           76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVA  140 (301)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~  140 (301)
                      ..+++++|+..++.++...|..+.++..+|.+++..|++++|+..|++++..+|++               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34667788888888888889999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      ++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+.+|++++.++|++..++..+|.++...|+   ++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~  281 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QL  281 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             HH-HHHHHHHhcc
Q 022205          221 LA-KKYYASTIDL  232 (301)
Q Consensus       221 ~A-~~~~~~al~~  232 (301)
                      +| ...|.+++..
T Consensus       282 ~a~~~~~~~~~~~  294 (336)
T 1p5q_A          282 AREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            88 5577777654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.79  E-value=6.1e-18  Score=146.38  Aligned_cols=219  Identities=8%  Similarity=-0.057  Sum_probs=173.3

Q ss_pred             hccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-------hhhHHHHHH
Q 022205           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGI  106 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~  106 (301)
                      ...++.+.++......+...... .-.+....++..+|.++...|+++.|+.++.+++...+..       ..++..+|.
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            45567777777777766431111 1133477889999999999999999999999999986533       357889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hc-CCCHHHHHHHHH
Q 022205          107 LLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TF-MADHDAWRELAE  174 (301)
Q Consensus       107 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~~lg~  174 (301)
                      ++...|++++|+..|++++...+..      ..++.++|.++...|++++|+.+++++++     .+ |..+.++..+|.
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            9999999999999999999865433      24899999999999999999999999999     45 777889999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQ-----PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      ++...|++++|+.++++++.+.     |.....+..+|.++...|+.+.+++|+..+++. ...| ....++..++.++.
T Consensus       273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~la~~y~  350 (383)
T 3ulq_A          273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA-DLEDFAIDVAKYYH  350 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH-HHHHHHHHHHHHHH
Confidence            9999999999999999999874     333334567899998888744466777777766 3334 35667778888888


Q ss_pred             HHHhhh
Q 022205          250 AIAQLT  255 (301)
Q Consensus       250 ~l~~~~  255 (301)
                      ..++..
T Consensus       351 ~~g~~~  356 (383)
T 3ulq_A          351 ERKNFQ  356 (383)
T ss_dssp             HTTCHH
T ss_pred             HCCCHH
Confidence            877633

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.78  E-value=6.6e-19  Score=130.93  Aligned_cols=124  Identities=14%  Similarity=0.029  Sum_probs=85.7

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205           86 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (301)
Q Consensus        86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (301)
                      .+.+++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45555666666667777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      +.+++.+|.++...|++++|+.+|++++.++|+++........+
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            77777777777777777777777777777777665544443333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.2e-17  Score=121.25  Aligned_cols=98  Identities=10%  Similarity=0.042  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      ..+..+|..+...|++++|+..|+++++.+|+++.+|.++|.++...|++++|+.+|++++.++|+++.+++.+|.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCCCcHHHHHHHHHHHhccc
Q 022205          213 LGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +|+   +++|+..|+++++++
T Consensus        85 ~~~---~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKE---YASALETLDAARTKD  102 (126)
T ss_dssp             TTC---HHHHHHHHHHHHHHH
T ss_pred             HhC---HHHHHHHHHHHHHhC
Confidence            555   555555555555555

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=4.5e-17  Score=147.03  Aligned_cols=173  Identities=13%  Similarity=0.071  Sum_probs=158.6

Q ss_pred             CchhHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMD-------CQCLD-------VAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL  124 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  124 (301)
                      .|..+.+|..+|..+..       .|+++       +|+.++++++. ..|++..+|..+|.++...|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            56778888888888775       79987       99999999997 78999999999999999999999999999999


Q ss_pred             HhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          125 LEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       125 l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      +..+|.++ .+|..+|.++...|++++|+.+|+++++..|.+...+...+.+ +...|++++|..+|+++++..|+++.+
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence            99999986 6999999999999999999999999999999888877776665 346899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |..++.++...|+   +++|...|++++...|.
T Consensus       428 ~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          428 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHHHTTTTC---HHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHhCCC---HhhHHHHHHHHHhccCC
Confidence            9999999999999   99999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8.9e-18  Score=121.93  Aligned_cols=119  Identities=22%  Similarity=0.182  Sum_probs=112.9

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      |..+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHc
Q 022205          175 IYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTL  213 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~  213 (301)
                      ++...|++++|+.+|++++.++      |.+..++..++.+...+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999      99999999988876543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.77  E-value=4.4e-17  Score=129.05  Aligned_cols=130  Identities=15%  Similarity=0.065  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      .++.+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            34566677777777777777777664  22 5667777777777777777777777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          180 QMYKQAAFCYEELILSQPTVP----------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |++++|+.+|++++...|.+.                .++..+|.++...|+   +++|+.+|+++++++|+
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  153 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcc
Confidence            777777777777777666554                677777777777777   77777777777777775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=1.2e-17  Score=152.14  Aligned_cols=149  Identities=9%  Similarity=-0.046  Sum_probs=141.9

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .+|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+
T Consensus        18 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   97 (568)
T 2vsy_A           18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL   97 (568)
T ss_dssp             ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            37788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++...   |++++|+..|++++..+|.+...+..++
T Consensus        98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A           98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999999999999999999999999999999999999   9999999999999999999887777766

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.77  E-value=2.9e-17  Score=130.10  Aligned_cols=154  Identities=16%  Similarity=0.038  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+..+|..++..|++++|+..+++++   +.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            34457788999999999999999999985   337889999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADH----------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      ...|++++|+..|+++++..|.+.                .+++.+|.++...|++++|+.+|++++.++|++.      
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------  155 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR------  155 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG------
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc------
Confidence            999999999999999999888766                9999999999999999999999999999999862      


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                            .+.   .+.|+..+.+.....|
T Consensus       156 ------~~~---~~~a~~~~~~~~~~~~  174 (213)
T 1hh8_A          156 ------HSK---IDKAMECVWKQKLYEP  174 (213)
T ss_dssp             ------GGH---HHHHHHHHHTTCCCCC
T ss_pred             ------cch---HHHHHHHHHhcccccc
Confidence                  234   6677777766555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.77  E-value=2.2e-16  Score=131.70  Aligned_cols=170  Identities=9%  Similarity=-0.008  Sum_probs=142.3

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  131 (301)
                      +....+...+..++..|++++|+..+++++...+..+.      .+..+|.++...|++++|+..|++++...+..    
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            34455556678899999999999999999997775544      33357888888899999999999999854332    


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---
Q 022205          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---  199 (301)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---  199 (301)
                        ..++..+|.+|...|++++|+.+|+++++..       +..+.+++++|.+|...|++++|+.++++++.+.+..   
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence              3378999999999999999999999999532       2224588999999999999999999999999876433   


Q ss_pred             ---HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcccC
Q 022205          200 ---PLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       200 ---~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p  234 (301)
                         +.++..+|.++..+| +   +++|+.+|++|+.+..
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~---~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHH
Confidence               789999999999999 5   6999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.76  E-value=1.2e-17  Score=128.65  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=66.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccH--HHHHH
Q 022205          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMY--KQAAF  187 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~--~~A~~  187 (301)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++|+.
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            35555555555555555555555555555555555555555555555555555555555555555 4455555  55555


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++|+
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC
Confidence            5555555555555555555555555555   55555555555555554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.76  E-value=2.6e-17  Score=126.69  Aligned_cols=133  Identities=12%  Similarity=-0.013  Sum_probs=121.4

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--hH
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNF--PT  150 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~  150 (301)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            46679999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      |+..+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.....+
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999999999999999999999999999999999999999886544333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=5e-17  Score=123.65  Aligned_cols=124  Identities=16%  Similarity=0.081  Sum_probs=106.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ++.++..+..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh--hhHHHHHHHHHhhh
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL--FGICLCSSAIAQLT  255 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~l~~~~~~l~~~~  255 (301)
                      .++..+|+   +++|+.+|+++++++|+ +..++  .++..+...+.+..
T Consensus        87 ~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           87 LARFDMAD---YKGAKEAYEKGIEAEGN-GGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999999999996 66644  45555666666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=6.1e-16  Score=130.27  Aligned_cols=193  Identities=11%  Similarity=0.011  Sum_probs=169.8

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .|+...++..+.......+..++|+.++.+++..+|++..+|..++.++...| .+++++..+..++..+|.+..+|...
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34445555555555555566689999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHHHHHc-C-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH--------HHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          139 VAIAKAQ-G-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--------QAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       139 ~~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      +.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        +++.++.+++..+|.|..+|...+.
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~  209 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY  209 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999998 8 9999999999999999999999999999999999888        9999999999999999999999999


Q ss_pred             HHHHcCCC----CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          209 VLYTLGGV----DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       209 ~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ++...+..    ..+++++.++.+++.++|+ +..+|+.+.-+....+.
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence            99988751    1268999999999999996 99999776665555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.76  E-value=7.3e-17  Score=122.29  Aligned_cols=132  Identities=14%  Similarity=0.046  Sum_probs=88.5

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      +..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34556666666666777777777777766666666667777777777777777777777777777777777777777777


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYA--DVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ..|++++|+.+|++++..+|.++.++..++  ..+...|+   +++|+..+.++..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~  146 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV  146 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence            777777777777777777776666653333  33566666   77777776665544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.76  E-value=2.7e-18  Score=134.91  Aligned_cols=146  Identities=14%  Similarity=0.003  Sum_probs=94.2

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHH
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----------------VLHKRR  138 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l  138 (301)
                      ...|+++.+...+.......+.....+..+|.++...|++++|+..|++++...|.++                .++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            3445566665555554444445556666677777777777777777777777666665                666677


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  218 (301)
                      |.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...++   
T Consensus        95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---  171 (198)
T 2fbn_A           95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE---  171 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777666666   


Q ss_pred             HHHHH
Q 022205          219 ILLAK  223 (301)
Q Consensus       219 ~~~A~  223 (301)
                      ..++.
T Consensus       172 ~~~~~  176 (198)
T 2fbn_A          172 ARKKD  176 (198)
T ss_dssp             HHC--
T ss_pred             HHHHH
Confidence            55444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.75  E-value=1.7e-16  Score=132.40  Aligned_cols=170  Identities=9%  Similarity=0.000  Sum_probs=144.7

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  131 (301)
                      .....+...+..++..|++++|+..+.+++...|...      ..++.+|.++...|++++|+..+++++...+..    
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            3444556778889999999999999999999877543      345678889999999999999999999865443    


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----
Q 022205          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYL---ETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPT----  198 (301)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----  198 (301)
                        ..++..+|.+|...|++++|+.+|++++   +..|++.    .+++++|.+|...|++++|+.++++++.+.+.    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence              5589999999999999999999999999   5566643    68999999999999999999999999987542    


Q ss_pred             --CHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhcccC
Q 022205          199 --VPLYHLAYADVLYTLGGVDNILLA-KKYYASTIDLTG  234 (301)
Q Consensus       199 --~~~~~~~la~~~~~~~~~~~~~~A-~~~~~~al~~~p  234 (301)
                        ...++.++|.++..+|+   +++| ..+|++++.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence              26789999999999999   9999 888999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=3.7e-17  Score=141.25  Aligned_cols=167  Identities=11%  Similarity=-0.054  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP  132 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~  132 (301)
                      .+...|..++..|++++|+..+++++...+      ....++..+|.++...|+++.|+..+++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            455779999999999999999999998643      34568899999999999999999999999985432       24


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hCCCCHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQPTVPL  201 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~  201 (301)
                      .++..+|.++...|++++|+..|+++++..+.      ...++.++|.+|...|++++|+.+|++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            57889999999999999999999999987542      245789999999999999999999999998     7788889


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++..+|.++...|+   +++|+.++++++++.+.
T Consensus       263 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          263 VLFGLSWTLCKAGQ---TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence            99999999999999   99999999999998654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=2.3e-17  Score=136.92  Aligned_cols=180  Identities=6%  Similarity=-0.151  Sum_probs=141.7

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      |.....+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (301)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~  220 (301)
                      ++...|++++|+..|+++++.+|+++..+.........   ..++...........|.++.+...++.+.  .|+   ++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~---~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAE---RE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH---HH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH---HH
Confidence            99999999999999999999999764322212222111   12222233333455677777777776654  577   88


Q ss_pred             HHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          221 LAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      +|++.|+++++++|+ +......+.....
T Consensus       153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~  180 (281)
T 2c2l_A          153 RELEECQRNHEGHED-DGHIRAQQACIEA  180 (281)
T ss_dssp             HHHTTTSGGGTTTSC-HHHHTHHHHHHHH
T ss_pred             HHHHHHHhhhccccc-hhhhhhHHHHHHH
Confidence            888888888888885 6555555544333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.75  E-value=2.4e-16  Score=119.42  Aligned_cols=134  Identities=13%  Similarity=-0.024  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      .....+..+|..++..|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcccHHHHHHHHHHHHhh
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~  195 (301)
                      +...|++++|+..|++++..+|.++.++..++.+  +...|++++|+.++.++..+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999999999988555544  88899999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=2e-18  Score=156.39  Aligned_cols=201  Identities=11%  Similarity=0.087  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHh
Q 022205           24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQ   93 (301)
Q Consensus        24 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~   93 (301)
                      +...+...+. .....++++.....++..       +|+...+|...+.+....|+          +++++.++++++..
T Consensus        31 ~~~~~~~~~~-~~~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~  102 (567)
T 1dce_A           31 ATQAVFQKRQ-AGELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  102 (567)
T ss_dssp             HHHHHHHHHH-TTCCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence            3344444333 345667788888888866       89999999999999888888          99999999999999


Q ss_pred             CCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHH
Q 022205           94 FPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWR  170 (301)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~  170 (301)
                      +|++..+|..++.++...+  ++++++..+.++++.+|.+..+|...+.+....| .+++++.++.++++.+|.+..+|.
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            9999999999999999999  7799999999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH------------HHH
Q 022205          171 ELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL------------AKK  224 (301)
Q Consensus       171 ~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~------------A~~  224 (301)
                      ..|.++...              +.+++|++++.+++.++|++..+|+.++.++...++   +++            |+.
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~  259 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVLCCVHVSREEACLSV  259 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCEEEEEEETTTTEEEE
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccceeeeeeccCCceEEE
Confidence            999999885              778999999999999999999999999999999888   655            666


Q ss_pred             HHHHHhcccCC
Q 022205          225 YYASTIDLTGG  235 (301)
Q Consensus       225 ~~~~al~~~p~  235 (301)
                      +|.+++.++|.
T Consensus       260 ~f~~~i~~~~~  270 (567)
T 1dce_A          260 CFSRPLTVGSR  270 (567)
T ss_dssp             EEEEEECTTBT
T ss_pred             Eeccceecccc
Confidence            78888887764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=1.2e-16  Score=138.14  Aligned_cols=220  Identities=9%  Similarity=-0.097  Sum_probs=172.2

Q ss_pred             HhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-------chhhHHHHH
Q 022205           33 KLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEG  105 (301)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a  105 (301)
                      ....++.+.++......+...... .-.+....++..+|.++...|+++.|+.++.+++..++.       ...++..+|
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            345677777877777766442111 113467788999999999999999999999999987652       245678899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hcCCCHHHHHHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNP------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TFMADHDAWRELAE  174 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~lg~  174 (301)
                      .++...|++++|+..|++++...+      ....++.++|.++...|++++|+.++++++.     .+|..+.++..+|.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            999999999999999999998532      2245889999999999999999999999999     78888899999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      ++...|++++|+.++++++.+.+     .....+..++.++...++.+.+.+|+.++++. ...|. ....+..++.++.
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~-~~~~~~~la~~y~  347 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAY-IEACARSAAAVFE  347 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHH-HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhH-HHHHHHHHHHHHH
Confidence            99999999999999999998854     33445666777777776644467777777762 23332 5566678888888


Q ss_pred             HHHhhh
Q 022205          250 AIAQLT  255 (301)
Q Consensus       250 ~l~~~~  255 (301)
                      ..++..
T Consensus       348 ~~g~~~  353 (378)
T 3q15_A          348 SSCHFE  353 (378)
T ss_dssp             HTTCHH
T ss_pred             HCCCHH
Confidence            877643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=4.7e-17  Score=118.56  Aligned_cols=111  Identities=17%  Similarity=0.157  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~   98 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK   98 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333444443344


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      ++++|+.+|++++..+|.+..++..++.++.
T Consensus        99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            4444444444443333333333333333333

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.75  E-value=2e-15  Score=134.94  Aligned_cols=173  Identities=14%  Similarity=-0.001  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205           64 WTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLH  135 (301)
Q Consensus        64 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  135 (301)
                      +..+..+|..+..    .+++++|+.+++++...  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.++
T Consensus       219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~  294 (490)
T 2xm6_A          219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ  294 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence            4455556666664    56666666666666653  445566666666666    66677777777766554  456666


Q ss_pred             HHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          136 KRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       136 ~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      +.+|.++...     +++++|+.+|+++++.  .++.+++.+|.+|...|   ++++|+.+|+++++.  .++.+++.+|
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  370 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLG  370 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            6677776666     6677777777766654  35666667777766644   666777777777665  4566677777


Q ss_pred             HHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          208 DVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       208 ~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      .+|..    .++   +++|+.+|+++++..   +..+++.++.++..
T Consensus       371 ~~y~~g~g~~~~---~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          371 NALLQGKGVKKD---EQQAAIWMRKAAEQG---LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCC---HHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence            77666    555   777777777766642   45566666666654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.74  E-value=8.1e-17  Score=127.94  Aligned_cols=167  Identities=11%  Similarity=-0.120  Sum_probs=148.4

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      .++.++..+|..+...+++++|+.+|+++.+  +.++.+++.+|.++.. +    ++++|+.+|+++..  +.++.+++.
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            4577888999999999999999999999987  4688999999999998 7    99999999999965  568999999


Q ss_pred             HHHHHHH----cCChhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          138 RVAIAKA----QGNFPTAIEWLNKYLETFM--ADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       138 l~~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      +|.+|..    .+++++|+.+|+++++..|  .++.+++.||.+|..    .+++++|+.+|++++.. |.++.+++.+|
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg  169 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG  169 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence            9999998    8999999999999999887  348999999999999    88999999999999998 77788999999


Q ss_pred             HHHHHc-C--CCCcHHHHHHHHHHHhcccC
Q 022205          208 DVLYTL-G--GVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       208 ~~~~~~-~--~~~~~~~A~~~~~~al~~~p  234 (301)
                      .+|... |  -..++++|+.+|+++++..+
T Consensus       170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999865 3  12239999999999998854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.74  E-value=8.2e-17  Score=135.27  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=146.6

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C---
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D---  131 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~---  131 (301)
                      ....|...+.++...|++++|+..+.+++...+.      ...++..+|.++...|++++|+.+|++++...+.  +   
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4556777788999999999999999999987652      2457888999999999999999999999986432  2   


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205          132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----  199 (301)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----  199 (301)
                       ..++..+|.+|.. |++++|+.+|++++.+.|..      ..++.++|.++...|++++|+.+|++++.+.|.+     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence             4588899999999 99999999999999998754      5788999999999999999999999999986644     


Q ss_pred             -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                       ..++..+|.++..+|+   +++|+.+|++++ ++|.
T Consensus       194 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCC
Confidence             3478889999999999   999999999999 9996

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.74  E-value=6.5e-18  Score=132.69  Aligned_cols=154  Identities=14%  Similarity=0.011  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------------
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------------  166 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------------  166 (301)
                      .....+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            3344456666778888888888877777777788999999999999999999999999999999887             


Q ss_pred             ---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205          167 ---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (301)
Q Consensus       167 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  243 (301)
                         .++.++|.++...|++++|+.+|++++.++|+++.+++.+|.++..+|+   +++|+.+|+++++++|+ +..++..
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~  161 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPN-NLDIRNS  161 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCC-cHHHHHH
Confidence               8999999999999999999999999999999999999999999999999   99999999999999996 9999999


Q ss_pred             HHHHHHHHHhhhcc
Q 022205          244 ICLCSSAIAQLTKG  257 (301)
Q Consensus       244 l~~~~~~l~~~~~~  257 (301)
                      ++.++..+++..+.
T Consensus       162 l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          162 YELCVNKLKEARKK  175 (198)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998875543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.74  E-value=8.3e-17  Score=116.63  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      ++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ...|++++|+.+|++++..+|+++.++..+|.++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=5.7e-17  Score=123.33  Aligned_cols=114  Identities=20%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      +.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      ++...|++++|+.+|++++.++|+++.++...+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            7777777777777777777777777665555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.74  E-value=7.7e-15  Score=131.10  Aligned_cols=173  Identities=12%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205           64 WTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLH  135 (301)
Q Consensus        64 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  135 (301)
                      ...+..+|..+..    .+++++|+.+++++..  ++++.+++.+|.+|..    .+++++|+.+|++++..  .++.++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3444455555555    4555555555555544  2345555555555554    45555555555555543  345555


Q ss_pred             HHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          136 KRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       136 ~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ..+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|++++..  .++.+++.+|
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  262 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            555555555    55555555555555543  244555555555554    45555555555555443  3445555555


Q ss_pred             HHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          208 DVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       208 ~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      .++..    .++   +++|+.+|+++++..   +..+++.++.++..
T Consensus       263 ~~y~~g~~~~~d---~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          263 YILEQGLAGAKE---PLKALEWYRKSAEQG---NSDGQYYLAHLYDK  303 (490)
T ss_dssp             HHHHHTTTSSCC---HHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCC---HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence            55554    444   555555555555431   34455555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=3.6e-16  Score=141.62  Aligned_cols=179  Identities=11%  Similarity=-0.001  Sum_probs=162.9

Q ss_pred             HHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           74 AMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        74 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....|++ ++|+..+++++..+|++..+|..++.++...|+          +++++..+.+++..+|.+..+|...+.++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445554 678999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---
Q 022205          143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---  216 (301)
Q Consensus       143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---  216 (301)
                      ...|  ++++++..+.++++.+|.+..+|...+.+....| .+++++.++.++++.+|.+..+|...+.++..+++.   
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            9999  6699999999999999999999999999999999 999999999999999999999999999999986221   


Q ss_pred             --------CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          217 --------DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       217 --------~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                              +.+++|++++.+++.++|+ +..+|+.+..+....+.
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence                    2389999999999999996 88999888877765443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.73  E-value=2.2e-16  Score=114.31  Aligned_cols=125  Identities=11%  Similarity=-0.033  Sum_probs=119.4

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      ..+|.....+..+|..++..|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      +|.++...|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999988875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.73  E-value=7.7e-16  Score=136.26  Aligned_cols=173  Identities=12%  Similarity=-0.013  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           66 LYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        66 ~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      ++..+|.++...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+.+|+++.   |.++.+++.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            7888999999999   999999999999999998888889999999765    79999999999998   8999999999


Q ss_pred             HHH-H--HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          139 VAI-A--KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       139 ~~~-~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      |.+ +  ...+++++|+.+|+++.+.  .++.++++||.+|. .|     ++++|+.+|+++.   |.++.+++++|.+|
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            998 4  5689999999999999865  58999999999998 55     9999999999998   89999999999988


Q ss_pred             HHc-CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          211 YTL-GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       211 ~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      ..- |-..++++|+.+|+++.+.  + +..+++.|+.++..
T Consensus       329 ~~G~g~~~d~~~A~~~~~~Aa~~--g-~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLTAARN--G-QNSADFAIAQLFSQ  366 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHHHHTT--T-CTTHHHHHHHHHHS
T ss_pred             HCCCCCCcCHHHHHHHHHHHHhh--C-hHHHHHHHHHHHHh
Confidence            872 1122399999999999874  2 67788888887764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=116.12  Aligned_cols=122  Identities=21%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      ..|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      |.++...|+   +++|+.+|++++.++|. +..+++.++.++...+
T Consensus        91 a~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKD---YTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhh---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            999999999   99999999999999996 8899999998887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.73  E-value=1.2e-15  Score=128.02  Aligned_cols=172  Identities=12%  Similarity=0.018  Sum_probs=155.6

Q ss_pred             HHHHhCCChH-HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205           72 IAAMDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (301)
Q Consensus        72 ~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~  140 (301)
                      ......|+++ +|+.++..++..+|++..+|..++.++...+.          +++++.++..++..+|.+..+|...+.
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3345667776 79999999999999999999999999988776          789999999999999999999999999


Q ss_pred             HHHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC-
Q 022205          141 IAKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV-  216 (301)
Q Consensus       141 ~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-  216 (301)
                      ++...|+  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.|..+|...+.++...+.. 
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            9999995  8999999999999999999999999999999998 69999999999999999999999999999887210 


Q ss_pred             ----------CcHHHHHHHHHHHhcccCCCchhHhhhH
Q 022205          217 ----------DNILLAKKYYASTIDLTGGKNTKALFGI  244 (301)
Q Consensus       217 ----------~~~~~A~~~~~~al~~~p~~~~~~~~~l  244 (301)
                                +.++++++++.+++..+|+ +..+|+.+
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~  233 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYH  233 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence                      2389999999999999996 88888644

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.73  E-value=3.2e-16  Score=133.31  Aligned_cols=136  Identities=13%  Similarity=-0.025  Sum_probs=128.4

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---------------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSSL  124 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a  124 (301)
                      .|.....+..+|..++..|++++|+..|++++...|.+               ..++..+|.++...|++++|+..|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56778899999999999999999999999999999988               589999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH-HHHHHHHHhh
Q 022205          125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA-AFCYEELILS  195 (301)
Q Consensus       125 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~  195 (301)
                      +..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++| ...|++++..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 5567777643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.72  E-value=1.1e-15  Score=128.68  Aligned_cols=185  Identities=13%  Similarity=0.045  Sum_probs=169.7

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (301)
                      .++.+++....... .++.++.....++..       +|++.++|...+.++...| .+++++.+++.++..+|++..+|
T Consensus        55 ~~~~~~r~~~~~~e-~se~AL~lt~~~L~~-------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW  126 (349)
T 3q7a_A           55 DAMDYFRAIAAKEE-KSERALELTEIIVRM-------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW  126 (349)
T ss_dssp             HHHHHHHHHHHTTC-CSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHh-------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence            46777777766655 455688888888866       8999999999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHhcCCCHHHHHH
Q 022205          102 RLEGILLEAK-G-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--------TAIEWLNKYLETFMADHDAWRE  171 (301)
Q Consensus       102 ~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~  171 (301)
                      ..++.++... + ++++++.++.+++..+|.+..+|...+.+....|.++        +++.++.++++.+|.+..+|..
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999998 7 9999999999999999999999999999999999888        9999999999999999999999


Q ss_pred             HHHHHHHccc-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          172 LAEIYVSLQM-------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       172 lg~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      .+.++...+.       +++++.++.+++.++|++..+|..+..++...|+
T Consensus       207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            9999999886       7999999999999999999999999999888887

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=1.5e-15  Score=136.99  Aligned_cols=174  Identities=9%  Similarity=-0.065  Sum_probs=159.1

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  137 (301)
                      ..|+...+|..++..+...|++++|..+|++++...|.++ .+|...|.++.+.|++++|...|++++...|.....+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            4678889999999999999999999999999999999875 689999999999999999999999999999988887777


Q ss_pred             HHHH-HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH
Q 022205          138 RVAI-AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYT  212 (301)
Q Consensus       138 l~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~  212 (301)
                      .+.+ +...|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++.    +|..++.....
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            6665 346899999999999999999999999999999999999999999999999998776654    88888888889


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCC
Q 022205          213 LGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .|+   .+.+..++.++++..|+
T Consensus       476 ~G~---~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          476 IGD---LASILKVEKRRFTAFRE  495 (530)
T ss_dssp             SSC---HHHHHHHHHHHHHHTHH
T ss_pred             cCC---HHHHHHHHHHHHHHCch
Confidence            999   99999999999999984

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.72  E-value=7.1e-16  Score=110.69  Aligned_cols=116  Identities=21%  Similarity=0.204  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      ..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      ..|++++|+.+|++++..+|+++.++..+|.++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            666666666666666666666666666666555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.72  E-value=5e-16  Score=114.04  Aligned_cols=122  Identities=9%  Similarity=-0.036  Sum_probs=99.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      .+|.++..+..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46777888888899999999999999999999999998888899999999999999999999999999999988899999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCCC----chhHhhhHHHHHHHH
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGK----NTKALFGICLCSSAI  251 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~l~~~~~~l  251 (301)
                      |.++...|+   +++|+.+|++++.++|+.    +...+..+..+....
T Consensus        84 ~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           84 GQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998   999999999999888741    344444444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=2.5e-16  Score=125.06  Aligned_cols=158  Identities=11%  Similarity=0.017  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHH
Q 022205           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLN  156 (301)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~  156 (301)
                      .+|+..|+++.+.  .++.+++.+|.++...+++++|+.+|++++..  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3577888888874  78999999999999999999999999999875  579999999999998 7    8999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCCCcHHHHHHHH
Q 022205          157 KYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYT----LGGVDNILLAKKYY  226 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~~~~A~~~~  226 (301)
                      ++.+  +.++.+++.||.+|..    .+++++|+.+|++++...|  .++.+++.+|.+|..    .++   +++|+.+|
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~  152 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF  152 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence            9965  6789999999999998    8899999999999999988  358999999999998    677   99999999


Q ss_pred             HHHhcccCCCchhHhhhHHHHHHH
Q 022205          227 ASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       227 ~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      ++++++ |+ +..+++.|+.++..
T Consensus       153 ~~A~~~-~~-~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          153 KGSSSL-SR-TGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHT-SC-TTHHHHHHHHHHHH
T ss_pred             HHHHHc-CC-CHHHHHHHHHHHHc
Confidence            999998 53 77789999988865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=1.8e-16  Score=115.36  Aligned_cols=99  Identities=11%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRE  171 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~  171 (301)
                      .++..+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++       .++..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555554432       24445


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          172 LAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      +|.++...|++++|+.+|++++...|
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            55555555555555555555555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.71  E-value=1.3e-16  Score=116.05  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-------HHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYH  203 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  203 (301)
                      .+.++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|...|++++|+..|+++++++|+++       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3557889999999999999999999999999999999999999999999999999999999999987653       478


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .++|.++..+|+   +++|+.+|++++...|+
T Consensus        87 ~~lg~~~~~~~~---~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           87 SRAGNAFQKQND---LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence            899999999999   99999999999998885

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=1.9e-16  Score=117.78  Aligned_cols=114  Identities=14%  Similarity=0.059  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------C-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh------
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-------D-----HDAWRELAEIYVSLQMYKQAAFCYEELILS------  195 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------  195 (301)
                      .+...|..++..|++++|+..|+++++.+|+       +     ..+|.++|.++..+|+|++|+.+|.+++++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            4455566666666666666666666666665       3     349999999999999999999999999999      


Q ss_pred             -CCCCHHHH----HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          196 -QPTVPLYH----LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       196 -~p~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                       +|+++.+|    +++|.++..+|+   +++|+..|+++++++|+ +....-.+..+...+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~-d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE-RKGETPGKERMMEVA  149 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CCSCCTTHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH
Confidence             99999999    999999999999   99999999999999996 666665665554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.71  E-value=1.4e-17  Score=147.66  Aligned_cols=151  Identities=13%  Similarity=0.099  Sum_probs=125.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAI  141 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~  141 (301)
                      .+++++|+..+..++...|.....+..+|.+++..|+|++|+..|++++..+|.+               ..++.++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777778888889999999999999999999999999988888               6788899999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                      +..+|++++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..++.++..+++   +++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~  403 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNE  403 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999988888   877


Q ss_pred             HHHH-HHHHh
Q 022205          222 AKKY-YASTI  230 (301)
Q Consensus       222 A~~~-~~~al  230 (301)
                      |... |.+.+
T Consensus       404 a~~~~~~~~f  413 (457)
T 1kt0_A          404 RDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            6643 44433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.71  E-value=2.6e-16  Score=113.46  Aligned_cols=99  Identities=19%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      ++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cHHHHHHHHHHHHhhCCCC
Q 022205          181 MYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~  199 (301)
                      ++++|+.+|++++.++|++
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            5555555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.71  E-value=2.9e-16  Score=115.34  Aligned_cols=120  Identities=16%  Similarity=0.009  Sum_probs=93.8

Q ss_pred             hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (301)
                      ..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+|+.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34567777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPT-----VPLYHLAYADVLYT  212 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~  212 (301)
                      |.++...|++++|+.+|++++.++|+     +..+...+..+...
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888887776     55555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.70  E-value=5.7e-16  Score=117.48  Aligned_cols=119  Identities=9%  Similarity=0.005  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLET------------------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .+...|..++..|++++|+..|.+++..                  +|.++.+|+++|.++...|++++|+.++++++.+
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            4455555555555555555555555555                  6777889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch-hHhhhHHHHHHHHHhhhc
Q 022205          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT-KALFGICLCSSAIAQLTK  256 (301)
Q Consensus       196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~l~~~~~~l~~~~~  256 (301)
                      +|+++.+++.+|.++..+|+   +++|+..|++++.++|+ +. .....+..+...+.+...
T Consensus        93 ~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           93 EETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             STTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   99999999999999996 66 556677777777766443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.70  E-value=2.7e-16  Score=123.29  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=140.7

Q ss_pred             HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCC
Q 022205           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------DNPLDPVLHKRRVAIAKAQGN  147 (301)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~  147 (301)
                      .+..|++++|...++.+....+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35679999999966555543336788999999999999999999999999998      445566789999999999999


Q ss_pred             hhHHHHHHHHHHHh---cCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcC
Q 022205          148 FPTAIEWLNKYLET---FMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TV----PLYHLAYADVLYTLG  214 (301)
Q Consensus       148 ~~~A~~~~~~~l~~---~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~  214 (301)
                      +++|+..+++++..   .+++    ..++..+|.++...|++++|+.++++++.+.+  .+    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999988   4433    45788999999999999999999999997642  22    235689999999999


Q ss_pred             CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      +   +++|..++++++++...  ....++.+.+...++..
T Consensus       162 ~---~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          162 N---LLEAQQHWLRARDIFAE--LEDSEAVNELMTRLNGL  196 (203)
T ss_dssp             C---HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTT
T ss_pred             C---HHHHHHHHHHHHHHHHH--cCCHHHHHHHHhcccch
Confidence            9   99999999999998663  33345666666666653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=1.2e-15  Score=108.31  Aligned_cols=109  Identities=19%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      .+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (301)
                      |++++|+.+|++++..+|+++.++..++.
T Consensus        86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           86 NRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44444444444444444444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=1.8e-15  Score=108.52  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=111.2

Q ss_pred             CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          128 NPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       128 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      +|.. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            5555 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      |.++...|+   +++|..+|++++..+|+ +..++..++.++...
T Consensus        84 a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           84 GNAYYKQGD---YDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence            999999999   99999999999999996 888999888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.69  E-value=2.1e-17  Score=146.41  Aligned_cols=142  Identities=13%  Similarity=0.184  Sum_probs=130.4

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAE  174 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg~  174 (301)
                      ..+++++|+..|+.++..+|.....+..+|.+++..|++++|+..|+++++.+|.+               ..+|+++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            44677788888888888899999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL  254 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~  254 (301)
                      ++...|++++|+.+|++++.++|+++.+++++|.++..+|+   +++|+.+|+++++++|+ +..++..++.++..+++.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999   99999999999999996 899999999999998874


Q ss_pred             h
Q 022205          255 T  255 (301)
Q Consensus       255 ~  255 (301)
                      .
T Consensus       402 ~  402 (457)
T 1kt0_A          402 N  402 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.69  E-value=3.1e-16  Score=113.07  Aligned_cols=99  Identities=12%  Similarity=-0.058  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhcccCC
Q 022205          214 GGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |+   +++|+..|+++++++|+
T Consensus        99 g~---~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HN---ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HH---HHHHHHHHHHHHC----
T ss_pred             CC---HHHHHHHHHHHHHhCcC
Confidence            99   99999999999999996

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=2.4e-15  Score=106.85  Aligned_cols=114  Identities=16%  Similarity=0.049  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      .+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  248 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~  248 (301)
                      ...|+   +++|..+|+++++.+|+ +..++..++.+.
T Consensus        83 ~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNR---FEEAKRTYEEGLKHEAN-NPQLKEGLQNME  116 (118)
T ss_dssp             HHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred             HHHhh---HHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence            99999   99999999999999996 888888877654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.69  E-value=2.1e-17  Score=147.09  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=117.1

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  176 (301)
                      .+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++++|.+|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34556677888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCCCcHHHHHHHHH-----------HHhcccCC
Q 022205          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYA-----------STIDLTGG  235 (301)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~-----------~al~~~p~  235 (301)
                      ...|++++|+.+|+++++++|+++.++..++.+  +...|+   +++|+..++           +++.++|+
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccc
Confidence            999999999999999999999998888888888  888888   999999999           88888875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.68  E-value=3.2e-16  Score=131.62  Aligned_cols=176  Identities=11%  Similarity=0.043  Sum_probs=138.0

Q ss_pred             CCChHHHHHHHHHHHHhCCC--------c---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQFPE--------S---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRV  139 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~--------~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~  139 (301)
                      .|++++|..+++++.+..+.        .   ...+...|.++...|++++|+..|.+++...+..      ..++..+|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35555666666655543321        0   1123344778899999999999999999875432      45889999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA  207 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la  207 (301)
                      .++...|++++|+.+|++++++.+..      ..++.++|.+|.. |++++|+.+|++++.+.|..      ..++.++|
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            99999999999999999999986532      4678899999999 99999999999999987643      56889999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCCC-----chhHhhhHHHHHHHHHhhhc
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGGK-----NTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~l~~~~~~l~~~~~  256 (301)
                      .++..+|+   +++|+.+|++++.+.|..     ...++.+++.++..+++...
T Consensus       163 ~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          163 RLLVRQQK---FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCC---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999   999999999999987741     13467788888877666443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.68  E-value=4.2e-16  Score=118.21  Aligned_cols=115  Identities=17%  Similarity=0.048  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLED------------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (301)
                      .+...|..++..|+|++|+..|++++..                  +|.+..++.++|.++...|++++|+..+++++++
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3344444445555555555555555444                  5666678888888888888888888888888888


Q ss_pred             cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcC
Q 022205          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLG  214 (301)
Q Consensus       162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~  214 (301)
                      +|+++.+|+.+|.++...|++++|+.+|++++.++|+++ .+...++.+....+
T Consensus        93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888887 55666666655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.4e-15  Score=111.56  Aligned_cols=115  Identities=22%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (301)
                      |.+...+..+|..+...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            3444455555555555555555555555555555554   5555556666666666666666666666666666666666


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      +|.++...|++++|+.+|++++.++|+++.++..++.+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            66666666666666666666666666665555555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.67  E-value=5.5e-16  Score=115.28  Aligned_cols=107  Identities=13%  Similarity=0.023  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLET------  161 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------  161 (301)
                      .+...|..++..|+|++|+..|++++..+|+       +.     .+|.++|.++..+|++++|+..+++++++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3445555566666666666666666666555       33     38888888888888888888888888888      


Q ss_pred             -cCCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          162 -FMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       162 -~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                       +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence             99999999    9999999999999999999999999988775543333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.66  E-value=6e-15  Score=106.99  Aligned_cols=113  Identities=12%  Similarity=0.010  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELA  173 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg  173 (301)
                      .++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            455666666667777777777777776666666   566667777777777777777777777777766   66677777


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       174 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      .++...|++++|+..|++++...|+++.+......+...
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            777777777777777777777777666655555444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=4.4e-16  Score=127.14  Aligned_cols=197  Identities=10%  Similarity=-0.095  Sum_probs=166.9

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHH-------HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHH----
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV-------SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL----  103 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----  103 (301)
                      .+.+...+.......+..       +|....+|..+       +.++...++..+++..+.+.+.+.|.....++.    
T Consensus        18 ~~~d~~~A~~~F~~a~~~-------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~   90 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY-------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL   90 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred             cCCCHHHHHHHHHHHHHh-------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence            467777788777777766       88889999988       778888888889999999999988765544443    


Q ss_pred             -----------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-C
Q 022205          104 -----------------EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-D  165 (301)
Q Consensus       104 -----------------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~  165 (301)
                                       ++.++...|+|++|...|..++..+|.+. +.+.+|.++...+++++|+..|+.+....+. .
T Consensus        91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~  169 (282)
T 4f3v_A           91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL  169 (282)
T ss_dssp             TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred             ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence                             78889999999999999999999999888 9999999999999999999999977664311 1


Q ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205          166 -HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (301)
Q Consensus       166 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (301)
                       ..+++.+|.++...|++++|+.+|++++.-.  |. .+.+++.+|.++..+|+   .++|...|++++..+|+  ..++
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~--~~~~  244 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE--PKVA  244 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC--HHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc--HHHH
Confidence             3589999999999999999999999998544  55 56799999999999999   99999999999999994  5444


Q ss_pred             hhH
Q 022205          242 FGI  244 (301)
Q Consensus       242 ~~l  244 (301)
                      ..|
T Consensus       245 ~aL  247 (282)
T 4f3v_A          245 AAL  247 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.65  E-value=6.6e-16  Score=126.13  Aligned_cols=208  Identities=12%  Similarity=-0.060  Sum_probs=171.3

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE-------GILLEAKGLWAEAEKAYSSLLEDNPLDPV-------  133 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------  133 (301)
                      +..|..+ ..++...|...|.+++..+|+...+|..+       +.++...+++.+++..+++.+...|....       
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            3445554 68999999999999999999999999999       89999999999999999999997775433       


Q ss_pred             --------------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205          134 --------------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       134 --------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  199 (301)
                                    +...++.++...|++++|...|...+...|.+. ..+.+|.+++..++|++|+.+|+.+....+..
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                          445588999999999999999999999999888 99999999999999999999999887643221


Q ss_pred             --HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc--CCCchhHhhhHHHHHHHHHhhhccCCcccccchHHHHHHHHH
Q 022205          200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT--GGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAA  275 (301)
Q Consensus       200 --~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (301)
                        ..+++.+|.++..+|+   +++|+.+|++++...  |.....+++.+++|+..+|+..               .|...
T Consensus       169 ~~~~a~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d---------------eA~~~  230 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLAL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES---------------AAVAL  230 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH---------------HHHHH
T ss_pred             cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH---------------HHHHH
Confidence              3489999999999999   999999999998654  4225678999999999999733               35555


Q ss_pred             HHHHHHhhCChhhhHHHHHHhhc
Q 022205          276 LEKDYKQRAPAKLLLLTSALKSL  298 (301)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~  298 (301)
                      +.+++... |+  +++...|..+
T Consensus       231 l~~a~a~~-P~--~~~~~aL~~~  250 (282)
T 4f3v_A          231 LEWLQTTH-PE--PKVAAALKDP  250 (282)
T ss_dssp             HHHHHHHS-CC--HHHHHHHHCT
T ss_pred             HHHHHhcC-Cc--HHHHHHHhCC
Confidence            66665544 33  6666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.65  E-value=1.9e-15  Score=106.39  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA  205 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  205 (301)
                      +|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.  ++.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666  6666666


Q ss_pred             HHHHHHHc-CCCCcHHHHHHHHHHHhcccCC
Q 022205          206 YADVLYTL-GGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       206 la~~~~~~-~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +|.++... |+   +++|+.++++++...|.
T Consensus        82 l~~~~~~~~~~---~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGK---EVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSC---SHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCC---HHHHHHHHHHHhhcccC
Confidence            66666666 66   66666666666666653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.65  E-value=1.9e-15  Score=106.34  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=103.5

Q ss_pred             CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHH
Q 022205           94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRE  171 (301)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~  171 (301)
                      +|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.  ++.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-ccHHHHHHHHHHHHhhCCCCH
Q 022205          172 LAEIYVSL-QMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       172 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~  200 (301)
                      +|.++... |++++|+.++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=7.7e-15  Score=108.80  Aligned_cols=118  Identities=13%  Similarity=-0.035  Sum_probs=109.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205          126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (301)
Q Consensus       126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  202 (301)
                      ..+|.+...+..+|..+...|++++|+..|+++++.+|++   +.++..+|.++...|++++|+.+|++++..+|+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3567889999999999999999999999999999999988   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  247 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~  247 (301)
                      +..+|.++...|+   +++|+.+|++++.++|+ +..++..+..+
T Consensus       102 ~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~  142 (148)
T 2dba_A          102 LYRRSQALEKLGR---LDQAVLDLQRCVSLEPK-NKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHHTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence            9999999999999   99999999999999996 77777666543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.64  E-value=7e-15  Score=106.41  Aligned_cols=116  Identities=13%  Similarity=0.046  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHH
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLA  205 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~  205 (301)
                      ..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+       +.++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555555555555555554443       445555


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +|.++...|+   +++|+.+|+++++..|  +...+..++.+...+++
T Consensus        85 la~~~~~~~~---~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           85 IGNSYFKEEK---YKDAIHFYNKSLAEHR--TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHTTC---HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc---HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHH
Confidence            5555555555   5555555555555544  24444444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.64  E-value=6.1e-15  Score=106.72  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=110.8

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HD  167 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~  167 (301)
                      |..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.+       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999887       89


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      +++.+|.++...|++++|+.+|++++...| ++..+..++.+....++
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 68888888887765543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.63  E-value=1.7e-13  Score=117.74  Aligned_cols=216  Identities=10%  Similarity=-0.040  Sum_probs=159.3

Q ss_pred             hccCChHHHHHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHH
Q 022205           34 LKVRRPDKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGI  106 (301)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~  106 (301)
                      ....+.+.+.......+...  . ..++ ....++..+|.++...|++++|...+.+++...|...      .++..+|.
T Consensus        25 ~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34566777777777666541  1 1112 1334677889999999999999999999998765322      33677899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 022205          107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELA  173 (301)
Q Consensus       107 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~lg  173 (301)
                      ++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...|..     ..++..+|
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            9999999999999999998854        3345577889999999999999999999999987653     46788999


Q ss_pred             HHHHHcccHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC-c--hhHhhh
Q 022205          174 EIYVSLQMYKQAAFCYEELILSQP--TVPLYHL-----AYADVLYTLGGVDNILLAKKYYASTIDLTGGK-N--TKALFG  243 (301)
Q Consensus       174 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~--~~~~~~  243 (301)
                      .++...|++++|..++++++.+.+  ..+..+.     ..+.++...|+   +++|..++++++...|.. .  ...+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD---KAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC---HHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            999999999999999999987632  2211111     34456888999   999999999999877641 1  223455


Q ss_pred             HHHHHHHHHhhh
Q 022205          244 ICLCSSAIAQLT  255 (301)
Q Consensus       244 l~~~~~~l~~~~  255 (301)
                      ++.++...++..
T Consensus       259 la~~~~~~g~~~  270 (373)
T 1hz4_A          259 IARAQILLGEFE  270 (373)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHH
Confidence            666666555533

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.63  E-value=3e-16  Score=133.60  Aligned_cols=153  Identities=10%  Similarity=-0.037  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+..+|..++..|++++|+..|++++...|++..        +...+++.++...+.         ..++.++|.++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            4455566666666666666666666666666665431        112233333333221         13789999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCCCcHHH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY-TLGGVDNILL  221 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~~~~  221 (301)
                      ...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+.+|++++.++|+++.++..++.+.. ..+.   .+.
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998844 4456   788


Q ss_pred             HHHHHHHHhcccCC
Q 022205          222 AKKYYASTIDLTGG  235 (301)
Q Consensus       222 A~~~~~~al~~~p~  235 (301)
                      +...|.+++...|+
T Consensus       318 a~~~~~~~l~~~p~  331 (338)
T 2if4_A          318 QKEMYKGIFKGKDE  331 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHhhCCCCC
Confidence            89999999999885

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=3.2e-15  Score=110.88  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF----------PTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      .+.|++|+..+++++..+|+++.+|.++|.++...+++          ++|+..|+++++++|+++.+|+++|.+|...|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            34566666666666666666666666666666666554          47777777777777777777777777776654


Q ss_pred             -----------cHHHHHHHHHHHHhhCCCCHH
Q 022205          181 -----------MYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       181 -----------~~~~A~~~~~~al~~~p~~~~  201 (301)
                                 ++++|+.+|++|++++|++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                       666666666666666666543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.62  E-value=2.5e-16  Score=140.21  Aligned_cols=137  Identities=14%  Similarity=-0.005  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+..+|..++..|++++|+..++++++.+|+++.++..+|.++..+|++++|+..++++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcccHHHHHHHHH-----------HHHhhCCCC
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYE-----------ELILSQPTV  199 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~  199 (301)
                      ..+|++++|+..|+++++.+|+++.++..++.+  +...|++++|+..++           +++.++|+.
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999999999999999998  889999999999999           888777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.62  E-value=4.6e-14  Score=117.58  Aligned_cols=156  Identities=14%  Similarity=0.075  Sum_probs=131.1

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---  165 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---  165 (301)
                      |.....+...+..+...|++++|+..+.+++...|....      .+..+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            344455667788899999999999999999998876543      45678899999999999999999999876544   


Q ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          166 ---HDAWRELAEIYVSLQMYKQAAFCYEELI---LSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       166 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                         ..++..+|.+|...|++++|+.+|++++   ...|++.    .++.++|.+|..+|+   +++|+.+|++++++.+.
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR  228 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence               5689999999999999999999999999   5566643    589999999999999   99999999999988652


Q ss_pred             -----CchhHhhhHHHHHHHHHh
Q 022205          236 -----KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       236 -----~~~~~~~~l~~~~~~l~~  253 (301)
                           ....+++.+|.++..+++
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCC
Confidence                 126677888888888876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.62  E-value=4.7e-14  Score=121.31  Aligned_cols=168  Identities=15%  Similarity=0.018  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------  132 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------  132 (301)
                      ..++..+|..++..|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|...      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            44566778889999999999999999999887543     2567889999999999999999999998654332      


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----  199 (301)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----  199 (301)
                      .++..+|.++...|++++|+..+++++...+        ....++..+|.++...|++++|..++++++.+.|..     
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            3477899999999999999999999998763        335677889999999999999999999999987753     


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      ..++..+|.++...|+   +++|..++++++.+.+
T Consensus       174 ~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGD---LDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence            4678899999999999   9999999999998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.61  E-value=5.2e-14  Score=101.99  Aligned_cols=115  Identities=13%  Similarity=0.031  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRV  139 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~  139 (301)
                      .+..+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            456789999999999999999999999999888   799999999999999999999999999999999   88999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      .++...|++++|+..|++++..+|+++.+......+....+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887766655544333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.61  E-value=1.3e-15  Score=129.71  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH-H
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-V  177 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~-~  177 (301)
                      .++..+|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+..|+++++++|+++.++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999999984 4


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHH
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      ..+..+.+...|.+++...|.++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788999999999999987754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=3e-15  Score=111.06  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY----------KQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +.+.+++|+..++++++++|+++.+|+++|.++...+++          ++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            445689999999999999999999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205          214 G-----------GVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (301)
Q Consensus       214 ~-----------~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~  246 (301)
                      |           +   +++|+.+|++|++++|+ +...+..+..
T Consensus        94 g~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~-~~~y~~al~~  133 (158)
T 1zu2_A           94 AFLTPDETEAKHN---FDLATQFFQQAVDEQPD-NTHYLKSLEM  133 (158)
T ss_dssp             HHHCCCHHHHHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cccCcchhhhhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            5           7   99999999999999996 6655544443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.60  E-value=1.8e-15  Score=108.32  Aligned_cols=94  Identities=15%  Similarity=0.049  Sum_probs=64.6

Q ss_pred             cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205          111 KGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       111 ~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      +|++++|+..|++++..   +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46677777777777776   466666777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHHHHH
Q 022205          188 CYEELILSQPTVPLYHL  204 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~  204 (301)
                      +|++++...|+++.+..
T Consensus        83 ~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhCCCcHHHHH
Confidence            77777777777666543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.59  E-value=5.9e-14  Score=124.13  Aligned_cols=178  Identities=13%  Similarity=0.034  Sum_probs=147.7

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .+.++..+|..+...+.++.+........+.. +.++.+++.+|.++...|   ++++|+.+|+++...+|.....++.+
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L  219 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV  219 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34567778888888886655554433333221 345559999999999999   99999999999999999999999999


Q ss_pred             HHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          139 VAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEI-Y--VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       139 ~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      |.+|...    +++++|+.+|+++.   |.++.+++.||.+ +  ...+++++|+.+|+++...  .++.+++.+|.+|.
T Consensus       220 g~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          220 ARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999765    79999999999998   8999999999999 4  4689999999999999864  58999999999998


Q ss_pred             HcCC--CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          212 TLGG--VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       212 ~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                       .|.  ..++++|+.+|+++.   |+ +..+++.++.++..
T Consensus       295 -~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          295 -EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRR  330 (452)
T ss_dssp             -HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHT
T ss_pred             -cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHC
Confidence             551  122999999999999   74 89999999988775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.59  E-value=1.6e-14  Score=124.28  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLE----------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (301)
                      .+..+|..+...|++++|+..|++++.                .+|.+..++.++|.++...|++++|+.+++++++.+|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            455667777777777777777777766                3344444444444444444555555555555544444


Q ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       164 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      +++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4444444445554444555555555555544444444444444444444444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.57  E-value=1.2e-13  Score=114.36  Aligned_cols=106  Identities=17%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (301)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  174 (301)
                      |.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVP  200 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~  200 (301)
                      ++...|++++|+..|++++.++|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999888764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.56  E-value=9.3e-14  Score=119.53  Aligned_cols=126  Identities=15%  Similarity=0.063  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE  126 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  126 (301)
                      ....+..+|..++..|++++|+..|++++.                ..|.+..++..+|.++..+|++++|+.++++++.
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            455688899999999999999999999998                6677888999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  188 (301)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++++++...
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.55  E-value=6.9e-14  Score=104.82  Aligned_cols=131  Identities=16%  Similarity=0.011  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHH
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDA  168 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~  168 (301)
                      +..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..+
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            3444444444444444444444444432211      1255556666666666666666666666554332      445


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      +..+|.++...|++++|+.++++++...+.      ...++..+|.++...|+   +++|..++++++++..
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence            666777777777777777777777655321      13456677777777777   7777777777776644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.54  E-value=8.3e-13  Score=109.20  Aligned_cols=164  Identities=15%  Similarity=0.050  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205           83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      |+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+|  .+..++...+.++..+|+.+.|.+.+++..+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78889888877656667778999999999999999999999999987  8899999999999999999999999999999


Q ss_pred             hcCC----CHHHHHHH--HHHHHHcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205          161 TFMA----DHDAWREL--AEIYVSLQ--MYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (301)
Q Consensus       161 ~~p~----~~~~~~~l--g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al  230 (301)
                      .+|+    +-.....+  |.+.+..|  ++.+|..+|+++....|+  .+..+++   ++..+|+   +++|...++.++
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~---~~eAe~~L~~l~  238 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN---IAEAQGIVELLL  238 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC---HHHHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC---HHHHHHHHHHHH
Confidence            9983    23334444  44466666  899999999999888886  2334333   8999999   999999999888


Q ss_pred             cc----------cCCCchhHhhhHHHHHHHHHh
Q 022205          231 DL----------TGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       231 ~~----------~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +.          +|+ +..++.++..+...+|+
T Consensus       239 ~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          239 SDYYSVEQKENAVLY-KPTFLANQITLALMQGL  270 (310)
T ss_dssp             SHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC
T ss_pred             HhcccccccccCCCC-CHHHHHHHHHHHHHhCh
Confidence            76          475 89999898888888764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.54  E-value=6.7e-13  Score=109.76  Aligned_cols=166  Identities=10%  Similarity=-0.061  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKR  137 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~  137 (301)
                      ...+..+|.++...|++++|+.++.+.+...|  ++..+....+.++..+|+.+.|.+.++++...+|+    +-.+...
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            34456889999999999999999999998887  88999999999999999999999999999999983    2223344


Q ss_pred             H--HHHHHHcC--ChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------CCCCHH
Q 022205          138 R--VAIAKAQG--NFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS----------QPTVPL  201 (301)
Q Consensus       138 l--~~~~~~~g--~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~  201 (301)
                      +  +.+....|  ++.+|..+|+++....|+  ++..+++   ++..+|++++|...++.+++.          +|+++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~  256 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT  256 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence            4  44466666  999999999999988886  3334444   899999999999999988776          588999


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (301)
Q Consensus       202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (301)
                      ++.+++.+...+|+     +|.+++.++.+.+|+ ++
T Consensus       257 ~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~-hp  287 (310)
T 3mv2_B          257 FLANQITLALMQGL-----DTEDLTNQLVKLDHE-HA  287 (310)
T ss_dssp             HHHHHHHHHHHTTC-----TTHHHHHHHHHTTCC-CH
T ss_pred             HHHHHHHHHHHhCh-----HHHHHHHHHHHhCCC-Ch
Confidence            99999999999986     678999999999996 54

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.54  E-value=3.4e-13  Score=112.28  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=124.6

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchh---HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDV---WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEG  105 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a  105 (301)
                      ..++.+.+.......+..    ....|+.   ...+..+|..+...|++++|+.++++++...+..      ..++..+|
T Consensus        87 ~~~~y~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKK----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhcc----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            345566666666666543    1223332   2344458888888899999999999999965432      23688999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLE-------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWREL  172 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l  172 (301)
                      .++...|++++|+.+|++++.       ..+....++.++|.+|...|++++|+.+++++++..+..      +.+++.+
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  242 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR  242 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999999999995       222334588999999999999999999999999987544      7899999


Q ss_pred             HHHHHHcc-cHHHHHHHHHHHHhh
Q 022205          173 AEIYVSLQ-MYKQAAFCYEELILS  195 (301)
Q Consensus       173 g~~~~~~~-~~~~A~~~~~~al~~  195 (301)
                      |.++...| .+++|+.+|++++.+
T Consensus       243 g~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          243 GECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999 579999999999865

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.53  E-value=1.5e-13  Score=102.99  Aligned_cols=137  Identities=13%  Similarity=-0.080  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  131 (301)
                      ....++..+|..+...|++++|+.++.+++...+...      .++..+|.++...|++++|+..+++++...+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            4566888999999999999999999999998765332      478889999999999999999999999865432    


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                        ..++..+|.++...|++++|+..+++++...+..      +.++..+|.++...|++++|+.++++++.+...
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              5588899999999999999999999999874322      567889999999999999999999999987543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.52  E-value=2.5e-14  Score=102.24  Aligned_cols=95  Identities=13%  Similarity=0.016  Sum_probs=86.9

Q ss_pred             CCChHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205           77 CQCLDVAKDCIKVLQKQ---FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (301)
Q Consensus        77 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (301)
                      .|++++|+.+|++++..   +|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            58899999999999999   588899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHH
Q 022205          154 WLNKYLETFMADHDAWRE  171 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~  171 (301)
                      .|++++..+|+++.....
T Consensus        83 ~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHH
Confidence            999999999999876543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.52  E-value=4.9e-13  Score=104.49  Aligned_cols=135  Identities=17%  Similarity=0.095  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC-
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLD-  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~-  131 (301)
                      ....++..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++..   .+++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            56788999999999999999999999999984      3455678899999999999999999999999986   4433 


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--AD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                         ..++..+|.++...|++++|+..+++++...+  .+    ..++..+|.++...|++++|+.++++++.+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence               45789999999999999999999999997643  22    2356899999999999999999999999764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.50  E-value=2.8e-13  Score=96.33  Aligned_cols=102  Identities=13%  Similarity=0.074  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      .+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+..|++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD---RAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence            3567788888888888888888888888888888888888888888888888888888888888888   8888888888


Q ss_pred             HhcccCC-CchhHhhhHHHHHHHHHh
Q 022205          229 TIDLTGG-KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       229 al~~~p~-~~~~~~~~l~~~~~~l~~  253 (301)
                      ++.++|. .+..+...+......+++
T Consensus        79 al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           79 GLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccccHHHHHHHHHHHHHhcc
Confidence            8888775 344555555555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.47  E-value=1.9e-14  Score=124.16  Aligned_cols=201  Identities=13%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      +.+|..+|.+++..|++++|++.|.++     +++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence            358889999999999999999999663     45668888888999999999999999988885444 677888999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~  223 (301)
                      +.|++.++..+++.     |+ ..+|..+|..++..|+|++|+.+|.++        ..|..+|.++..+|+   +++|+
T Consensus       106 Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~---yq~AV  168 (449)
T 1b89_A          106 KTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAV  168 (449)
T ss_dssp             ---CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC---HHHHH
T ss_pred             HhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc---HHHHH
Confidence            99999998888853     53 469999999999999999999999977        357889999999999   99999


Q ss_pred             HHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccchHHHHHHHHHHHHHHHhhCC-h-hhhHHHHHH
Q 022205          224 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAP-A-KLLLLTSAL  295 (301)
Q Consensus       224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~  295 (301)
                      +.|+++     + ++..|-.++.++..++++..+..-... .. ..+.-...+...|++.+. + -+..++..|
T Consensus       169 ea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          169 DGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999998     2 567888888888887765554222221 11 111112246677777765 2 234444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.47  E-value=5.1e-12  Score=121.27  Aligned_cols=172  Identities=11%  Similarity=0.005  Sum_probs=139.1

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-----------  130 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------  130 (301)
                      +.+.+|.++|.++...|++++|+..|.++     +++..+..+|.++.+.|++++|+.+|..+.+..++           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            45778889999999999999999999765     78888899999999999999999999887654432           


Q ss_pred             ----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          131 ----------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       131 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                                      +...+..+|..+...|++++|+.+|.++        ..|..+|.++...|++++|+++++++..
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence                            2335667888888889999999988885        4788899999999999999999988843


Q ss_pred             hCC-------------------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          195 SQP-------------------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       195 ~~p-------------------------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      ..+                         .++..+..++..|...|.   +++|+.+++.++.++|. +...+..++.++.
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---feEAI~LlE~aL~Lera-H~gmftELaiLya 1325 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChh-HhHHHHHHHHHHH
Confidence            322                         133445567778889999   99999999999999985 8888866666665


Q ss_pred             H
Q 022205          250 A  250 (301)
Q Consensus       250 ~  250 (301)
                      +
T Consensus      1326 K 1326 (1630)
T 1xi4_A         1326 K 1326 (1630)
T ss_pred             h
Confidence            4

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.46  E-value=4.8e-11  Score=114.73  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=120.7

Q ss_pred             HHHHHHhCCChHHHHHHHHHHH--------------------Hh--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQ--------------------KQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED  127 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  127 (301)
                      +|..+...|.+++|..+|+++.                    +.  ..+.+.+|..+|..+...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            3666666666666665554331                    11  1366788999999999999999999999876   


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHcc
Q 022205          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------DHDAWRELAEIYVSLQ  180 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------~~~~~~~lg~~~~~~~  180 (301)
                        +++..+..+|.++...|++++|+++|..+++..+.                           +...+..+|..+...|
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence              77888999999999999999999999887755432                           2335667888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      +|++|+.+|.++        ..|..+|.++..+|+   +++|++.+++|.      +.++|...+.++...
T Consensus      1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA~------n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKAN------STRTWKEVCFACVDG 1263 (1630)
T ss_pred             CHHHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHhC------CHHHHHHHHHHHhhh
Confidence            888888888886        367888899999988   999999998882      445666555555433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.44  E-value=9.7e-12  Score=108.80  Aligned_cols=166  Identities=14%  Similarity=0.031  Sum_probs=139.2

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----------------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNP  129 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  129 (301)
                      ....|..+...|++++|+..+..+++..|...                 .++..+|.+|...|++++|++.+.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34457778889999999999999999887443                 2467899999999999999999999988655


Q ss_pred             CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-
Q 022205          130 LDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-  196 (301)
Q Consensus       130 ~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  196 (301)
                      ...      .+...+|.++...|++++|+.++++++...+.      ...++..+|.++...|+|++|+.++++++... 
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            432      25566788888899999999999999876432      26788999999999999999999999998652 


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          197 -----PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       197 -----p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                           |....++..+|.+|...|+   +++|..+|++++...+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRN---LAKSKASLTAARTAANS  207 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhc
Confidence                 3335689999999999999   99999999999988664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.43  E-value=2.4e-12  Score=91.43  Aligned_cols=96  Identities=13%  Similarity=0.041  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCC--CHHHHHHHHHHHH
Q 022205          196 QPT--VPLYHLAYADVLY  211 (301)
Q Consensus       196 ~p~--~~~~~~~la~~~~  211 (301)
                      .|.  +......+...+.
T Consensus        83 ~~~~~~~~~~~~l~~~l~  100 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLR  100 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            663  3333344444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.42  E-value=2.5e-12  Score=86.91  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      +.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hc
Q 022205          212 TL  213 (301)
Q Consensus       212 ~~  213 (301)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.7e-13  Score=96.36  Aligned_cols=83  Identities=23%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc------hhH
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN------TKA  240 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~  240 (301)
                      .+|..+|.+++..|++++|+.+|++++.++|+++.++.++|.++..+|+   +++|+..|+++++++|+ +      ..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~   80 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE---YTQAIQMCQQGLRYTST-AEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444   44444444444444443 3      444


Q ss_pred             hhhHHHHHHHHHh
Q 022205          241 LFGICLCSSAIAQ  253 (301)
Q Consensus       241 ~~~l~~~~~~l~~  253 (301)
                      ++.++.++..+++
T Consensus        81 ~~~~~~~~~~~~~   93 (111)
T 2l6j_A           81 QYRLELAQGAVGS   93 (111)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            4444444444444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=6e-12  Score=88.29  Aligned_cols=95  Identities=12%  Similarity=0.060  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHL  204 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  204 (301)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|++++.++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          205 AYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       205 ~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      .+|.++..+|+   ++.|+..+++
T Consensus        83 ~~~~~~~~~~~---~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGS---VQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHC---CCCCSSSSSS
T ss_pred             HHHHHHHHHHh---HhhhHhHHHH
Confidence            99999999998   7777665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.39  E-value=3.6e-12  Score=88.24  Aligned_cols=88  Identities=17%  Similarity=0.035  Sum_probs=61.9

Q ss_pred             hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-Cchh
Q 022205          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTK  239 (301)
Q Consensus       161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  239 (301)
                      .+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.++..+|.++...|+   +++|+..|++++++.|. .+..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhcCCchh
Confidence            3577777888888888888888888888888888888887888888888888888   88888888888877664 3444


Q ss_pred             HhhhHHHHHHHH
Q 022205          240 ALFGICLCSSAI  251 (301)
Q Consensus       240 ~~~~l~~~~~~l  251 (301)
                      ....+...+...
T Consensus        79 ~~~~l~~~l~~~   90 (100)
T 3ma5_A           79 DLSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            444444444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.38  E-value=1e-10  Score=107.56  Aligned_cols=173  Identities=16%  Similarity=0.028  Sum_probs=151.9

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHH-HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAK-DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----------  127 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------  127 (301)
                      .|..+.+|...+......|+.++|. .++++++...|.+...|...+.+....|+++.|...|++++..           
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            5566777888788888889999997 9999999999999999999999999999999999999999974           


Q ss_pred             CCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 022205          128 NPL-----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL  194 (301)
Q Consensus       128 ~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~  194 (301)
                      .|.           ...+|...+....+.|..+.|..+|.++++. .+..+..|...|.+....++ ++.|..+|+.+++
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            253           3457888899988999999999999999988 55567788888887777654 9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ..|+++..|..++......|+   .+.|...|++++...|+
T Consensus       499 ~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          499 YFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS
T ss_pred             HCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC
Confidence            999999999999999999999   99999999999998873

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.38  E-value=1e-12  Score=113.43  Aligned_cols=167  Identities=13%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh----------------------------hHHHHHHHHHHcCCH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR----------------------------VGRLEGILLEAKGLW  114 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~----------------------------~~~~~a~~~~~~~~~  114 (301)
                      +...|..++..+...|++++|+.+++.+.+..++ +.                            +|..+|..+...|+|
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             --------------------------------------------------CHHHHTTTTTCC----------------CT
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Confidence            4446666666777777777777777666653222 33                            444444445555555


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      ++|..+|.++        ..|..+|.++.++|++++|+..++++     +++.+|..++.++...|+|+.|..+... +.
T Consensus       139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~  204 (449)
T 1b89_A          139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV  204 (449)
T ss_dssp             TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT
T ss_pred             HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence            5555555443        23445555555555555555555555     2455555555555555555555544443 22


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ..|   .-...+..+|...|.   +++|+.++++++.+++. +...+.+++.++.+.
T Consensus       205 ~~a---d~l~~lv~~Yek~G~---~eEai~lLe~aL~le~a-h~~~ftel~il~~ky  254 (449)
T 1b89_A          205 VHA---DELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYSKF  254 (449)
T ss_dssp             TCH---HHHHHHHHHHHHTTC---HHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTT
T ss_pred             hCH---hhHHHHHHHHHHCCC---HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhc
Confidence            223   223356678889999   99999999999999985 999999999888753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.38  E-value=8.1e-12  Score=84.31  Aligned_cols=85  Identities=22%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  175 (301)
                      .++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45567777788888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             HHHcc
Q 022205          176 YVSLQ  180 (301)
Q Consensus       176 ~~~~~  180 (301)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            76543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.33  E-value=3.5e-11  Score=105.23  Aligned_cols=168  Identities=10%  Similarity=0.007  Sum_probs=139.1

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PL  130 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~  130 (301)
                      ...++.++|..+...|++++|+.++.+++...+...      .+...++.++...|++++|+..++.++...      +.
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            345678999999999999999999999988765332      345567888888899999999999998742      33


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CC--
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TV--  199 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~--  199 (301)
                      ...++..+|.++...|++++|+..+++++...      |....++..+|.+|...|++++|..++++++...+   +.  
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            46688999999999999999999999998763      22367899999999999999999999999997643   33  


Q ss_pred             --HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       200 --~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                        ...+..+|.++...|+   +.+|..+|.++++..
T Consensus       214 ~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKD---YKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHh
Confidence              2456778888888899   999999999998763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.31  E-value=1.8e-11  Score=84.69  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.+.|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            35777777777777777777777777777777777777777777777777777777777777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.31  E-value=7.2e-12  Score=86.26  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      +..|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|++++.++|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45677777788888888888888888888877 88888888888888888888888888888877776543        4


Q ss_pred             CCCcHHHHHHHHHHHhcccCC
Q 022205          215 GVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .   +.+++..|++++..+|+
T Consensus        76 ~---~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 M---VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             H---HHHHHHHHCCTTHHHHC
T ss_pred             H---HHHHHHHHHHHhccCcc
Confidence            4   77777777777777775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.28  E-value=7.4e-12  Score=86.20  Aligned_cols=90  Identities=13%  Similarity=0.029  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +..|.++...|++++|+..|++++..+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45678888888888888888888888888888 88888888888888888888888888888888777643        6


Q ss_pred             cHHHHHHHHHHHHhhCCCC
Q 022205          181 MYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~  199 (301)
                      .+.+++.+|++++..+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            6777888888877776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.26  E-value=1.7e-10  Score=84.74  Aligned_cols=111  Identities=18%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHH
Q 022205          112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAF  187 (301)
Q Consensus       112 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~  187 (301)
                      +++++|+.+|+++.+..+....    +|.+|...+.+++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3567777777777776543333    777777777777777777777765  467777777777777    677777887


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhccc
Q 022205          188 CYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +|+++.+.  .++.+++++|.+|..    .++   +++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHCC
Confidence            77777765  567777777777777    666   788888888777763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.25  E-value=1.2e-09  Score=100.65  Aligned_cols=173  Identities=12%  Similarity=-0.015  Sum_probs=151.2

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----------CC-----------chhhHHHHHHHHHHcCCHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----------PE-----------SKRVGRLEGILLEAKGLWAEA  117 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~~a~~~~~~~~~~~A  117 (301)
                      .|....+|...+......|+++.|..+|++++...           |.           ...+|...+....+.|+.+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            46667778888888889999999999999999752           42           345788888988899999999


Q ss_pred             HHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          118 EKAYSSLLED-NPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       118 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      ...|.+++.. .+....+|...+.+....|+ ++.|..+|+.+++.+|+++..|...+......|+.+.|...|++++..
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999987 55557788888888877755 899999999999999999999999999999999999999999999998


Q ss_pred             CCC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          196 QPT---VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       196 ~p~---~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .|+   ...+|..+...-...|+   .+.+.+.+.++.+..|+
T Consensus       534 ~~~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          534 ISDSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            883   45788888888889999   99999999999999997

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.24  E-value=6.4e-10  Score=93.60  Aligned_cols=145  Identities=13%  Similarity=0.011  Sum_probs=112.9

Q ss_pred             HHHHHHhCCCchhhH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---C-ChhHHHHHHHH
Q 022205           87 IKVLQKQFPESKRVG--RLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---G-NFPTAIEWLNK  157 (301)
Q Consensus        87 ~~~~~~~~p~~~~~~--~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~  157 (301)
                      ..++....|.++.++  ++.|..+...++   +.+|+.+|+++++.+|+++.++..++.++...   + ........+..
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            344556667776654  566776666544   47899999999999999999888888877532   1 11111121221


Q ss_pred             ------HHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          158 ------YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       158 ------~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                            ++..+|.++.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|+   +++|+..|.+|+.
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~Alr  338 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFN  338 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence                  23567999999999999999999999999999999999974 7788999999999999   9999999999999


Q ss_pred             ccCC
Q 022205          232 LTGG  235 (301)
Q Consensus       232 ~~p~  235 (301)
                      ++|.
T Consensus       339 L~P~  342 (372)
T 3ly7_A          339 LRPG  342 (372)
T ss_dssp             HSCS
T ss_pred             cCCC
Confidence            9996

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.24  E-value=2.9e-10  Score=83.49  Aligned_cols=120  Identities=11%  Similarity=-0.131  Sum_probs=104.6

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE  153 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~  153 (301)
                      +++++|+.+|+++.+..+  +.+.  +|.++...+.+++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            468899999999998753  3444  999999999999999999999986  688999999999999    899999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      +|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.  .++.+...++
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            99999986  689999999999999    89999999999999987  3556555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.18  E-value=1.4e-09  Score=91.50  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             CchhHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH----H---HHH-HHHH--HHHh
Q 022205           60 GPDVWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW----A---EAE-KAYS--SLLE  126 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~---~A~-~~~~--~al~  126 (301)
                      +++.+..|.+ |..++..+   ++.+|+.+|+++++.+|+++.++..++.++.....+    .   .++ ..++  .++.
T Consensus       193 ~~~Aydl~Lr-a~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          193 RGALLTNFYQ-AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             SGGGHHHHHH-HHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             CHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            5566666655 55555544   457899999999999999999998888877532111    1   111 1122  2335


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      .+|.++.++..++..+...|++++|+..+++++.++| +..+|..+|.++...|++++|+..|.+|+.++|..+.
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            6799999999999999999999999999999999997 4788899999999999999999999999999998754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.15  E-value=2.3e-10  Score=101.51  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=103.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHH
Q 022205          105 GILLEAKGLWAEAEKAYSSLLE-----DNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDA  168 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~  168 (301)
                      +..+..+|+|++|+..+++++.     ..|+++   ..+.++|.+|..+|++++|+.++++++..     .|++   ...
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            3446678999999999999987     345554   47889999999999999999999999875     3455   456


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      +++||.+|..+|++++|+..|++|+.+     .|++|.   ....++.++..++.   +++|...|+++.+..
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~---~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM---FRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            889999999999999999999999964     567765   45688899999999   999999999986543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.14  E-value=1.9e-09  Score=87.31  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             cCCCCHHHHHHHHHHHHH-----cCC------hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----ccHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKA-----QGN------FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSL-----QMYKQAAFC  188 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~-----~g~------~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~-----~~~~~A~~~  188 (301)
                      .+|+++.+++..|.+...     .|.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            456778887877776654     233      46899999999999999  677999999999995     999999999


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcccCC
Q 022205          189 YEELILSQPTV-PLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       189 ~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |+++++++|+. ..+++.+|..+.. .|+   ++.|..++++++..+|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd---~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNN---RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCC
Confidence            99999999975 9999999999988 499   99999999999999885

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.12  E-value=6.2e-10  Score=98.69  Aligned_cols=127  Identities=10%  Similarity=-0.007  Sum_probs=106.2

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhC-----CC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC---HH
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLD---PV  133 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~---~~  133 (301)
                      .+..+...|++++|+..+++++...     |+   ...++..+|.+|..+|+|++|+.++++++.     ..|++   ..
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3455678899999999999999853     33   446778899999999999999999999997     34554   44


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADHD---AWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      .+.++|.+|..+|++++|+..+++++++     .|++|.   ....++.++..++.+++|...|+++.+..
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999975     466654   55789999999999999999999987543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.09  E-value=1.4e-09  Score=73.72  Aligned_cols=71  Identities=11%  Similarity=-0.039  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          128 NPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                      +|+++.++..+|.++...++   .++|...+++++..+|+++.+++.+|..++..|+|++|+.+|++++..+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45555555555555544433   455555555555555555555555555555555555555555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.00  E-value=3.1e-09  Score=72.02  Aligned_cols=71  Identities=10%  Similarity=-0.036  Sum_probs=67.4

Q ss_pred             cCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          162 FMADHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       162 ~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +|+++..+..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+   |++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence            68999999999999987665   7999999999999999999999999999999999   99999999999999995

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=1.2e-08  Score=74.69  Aligned_cols=97  Identities=18%  Similarity=0.000  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILLAKKY  225 (301)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~~~~A~~~  225 (301)
                      +...|.+.+..+|.+..+.+++|.++...+   ++++++..++.+++.+ | ++.++++++|..++++|+   |++|+++
T Consensus        17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y~~A~~y   93 (152)
T 1pc2_A           17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---HHHHHHH
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---HHHHHHH
Confidence            344444444444444555555555555444   3445555555555544 3 234455555555555555   5555555


Q ss_pred             HHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          226 YASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       226 ~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      ++++++.+|+ +..+......+...+
T Consensus        94 ~~~lL~ieP~-n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           94 VRGLLQTEPQ-NNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence            5555555553 444444444444333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=2e-08  Score=73.63  Aligned_cols=96  Identities=15%  Similarity=-0.005  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcccHHHHHH
Q 022205          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      ....+...|.+.+..+|.+..+.+++|.++.+.+   +.++++..|+.+++.+ | ++.+++++||..+++.|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567888899999999999999999999999988   6779999999999998 7 568899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHH
Q 022205          188 CYEELILSQPTVPLYHLAYAD  208 (301)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~  208 (301)
                      +++++++++|++..+....-.
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999887655543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.85  E-value=5.2e-08  Score=67.55  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  237 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (301)
                      ++.-++.+|..++..|+|..|+..|+.|+...       +..+.++..+|.+++.+|+   ++.|+.+++++++++|+ +
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~---~~~A~~~~~~al~l~P~-~   79 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPE-H   79 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-C
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCC-C
Confidence            34556667777777777777777777777542       2345667777777777777   77777777777777775 6


Q ss_pred             hhHhhhHHH
Q 022205          238 TKALFGICL  246 (301)
Q Consensus       238 ~~~~~~l~~  246 (301)
                      ..+..++..
T Consensus        80 ~~~~~n~~~   88 (104)
T 2v5f_A           80 QRANGNLKY   88 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhHHH
Confidence            666666653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.82  E-value=5.9e-08  Score=67.23  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      -.+.+|..++..|+|..|+..|+.+++..       +..+.++..+|.++++.|+++.|+.++++++.++|+++.+..++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            34455555555555555555555555432       12345555566666666666666666666666666665555544


Q ss_pred             H
Q 022205          207 A  207 (301)
Q Consensus       207 a  207 (301)
                      +
T Consensus        87 ~   87 (104)
T 2v5f_A           87 K   87 (104)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.81  E-value=2.1e-06  Score=76.39  Aligned_cols=160  Identities=9%  Similarity=-0.029  Sum_probs=79.1

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----------cCCC
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----------DNPL  130 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------~~p~  130 (301)
                      |..+.+|...+......|+.+.|..++++++.. |.+...+...+... ..+   +....+.....          ..+.
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~  284 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKE  284 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccc
Confidence            445667777787888899999999999999999 98766655444331 000   00000000000          0000


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      ...+|...+....+.+..+.|..+|.++ ...+.....|...|.+....+ +.+.|..+|+.+++..|+++..+..++..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            1123444444444444455555555555 221123334444444433333 35555555555555445544444444444


Q ss_pred             HHHcCCCCcHHHHHHHHHHH
Q 022205          210 LYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       210 ~~~~~~~~~~~~A~~~~~~a  229 (301)
                      ....|+   .+.|...|+++
T Consensus       364 e~~~~~---~~~aR~l~er~  380 (493)
T 2uy1_A          364 LLRIGD---EENARALFKRL  380 (493)
T ss_dssp             HHHHTC---HHHHHHHHHHS
T ss_pred             HHHcCC---HHHHHHHHHHH
Confidence            444454   55555444444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.77  E-value=9.6e-08  Score=83.37  Aligned_cols=94  Identities=11%  Similarity=0.095  Sum_probs=74.1

Q ss_pred             HcCCHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCH---HHHHHHH
Q 022205          110 AKGLWAEAEKAYSSLLE-----DNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADH---DAWRELA  173 (301)
Q Consensus       110 ~~~~~~~A~~~~~~al~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg  173 (301)
                      ..|+|++|+..+++++.     ..|+++.   .+.++|.+|..+|+|++|+.++++++..     .|++|   ..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            35789999999999887     3455544   6788899999999999999999998875     34444   4678899


Q ss_pred             HHHHHcccHHHHHHHHHHHHhh-----CCCCHHHH
Q 022205          174 EIYVSLQMYKQAAFCYEELILS-----QPTVPLYH  203 (301)
Q Consensus       174 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~  203 (301)
                      .+|..+|++++|+.+|++|+++     .|++|.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999998864     46666543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.73  E-value=1.7e-06  Score=77.00  Aligned_cols=160  Identities=11%  Similarity=-0.087  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (301)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (301)
                      .....+|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...+...    +.++.   ++.+..
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~---~~~l~~  267 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAV---YGDLKR  267 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHH---HHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHH---HHHHHH
Confidence            44678999999999999999999999999999999999999999999 99988777555441    11111   222221


Q ss_pred             h-------------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHH
Q 022205          161 T-------------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYY  226 (301)
Q Consensus       161 ~-------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~~~~A~~~~  226 (301)
                      .             .+.....|...+....+.+..+.|...|+++ ...+....+|...|.+.+..+ +   .+.|...|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d---~~~ar~if  343 (493)
T 2uy1_A          268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS---RATPYNIF  343 (493)
T ss_dssp             HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred             HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC---hHHHHHHH
Confidence            1             1122467888888888889999999999999 443445677777777776665 6   99999999


Q ss_pred             HHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          227 ASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       227 ~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +.+++..|+ ....|...+.-...+++
T Consensus       344 e~al~~~~~-~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          344 SSGLLKHPD-STLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHcCC
Confidence            999998885 55544444433334443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.69  E-value=1.6e-05  Score=70.80  Aligned_cols=164  Identities=9%  Similarity=-0.101  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC-CCCHHH
Q 022205           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDN-PLDPVL  134 (301)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~-p~~~~~  134 (301)
                      ++..+...|.+.|++++|+.+|+.+.... +-+...+..+-.++...         +..+.|...|+...... +-+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            45556677889999999999999998864 23444444444444433         34788999999988754 236778


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYT  212 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  212 (301)
                      |..+...+.+.|++++|..+|++..+.. +-+..+|..+-..|.+.|++++|...|+...... .-+...+..+-.++.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999988753 2358889999999999999999999999988654 2356778888999999


Q ss_pred             cCCCCcHHHHHHHHHHHhcc
Q 022205          213 LGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~  232 (301)
                      .|+   .++|...|++.-+.
T Consensus       188 ~g~---~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          188 TKN---ADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTC---HHHHHHHHHHHHHH
T ss_pred             CCC---HHHHHHHHHHHHHh
Confidence            999   99999999987654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.68  E-value=1.1e-07  Score=76.92  Aligned_cols=107  Identities=11%  Similarity=-0.065  Sum_probs=91.2

Q ss_pred             hCCCchhhHHHHHHHHHH---c--C------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChhHHHHH
Q 022205           93 QFPESKRVGRLEGILLEA---K--G------LWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQ-----GNFPTAIEW  154 (301)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~  154 (301)
                      ..|+++.+++-.|.+...   .  |      ....|...++++++.+|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            446777777766665533   1  3      357899999999999999  566999999999995     999999999


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCC
Q 022205          155 LNKYLETFMAD-HDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       155 ~~~~l~~~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~  199 (301)
                      |+++++++|+. +..++.+|..+.. .|+++.|..++++++..+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 599999999999999988763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.67  E-value=5.7e-08  Score=84.86  Aligned_cols=95  Identities=11%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCH---HHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADH---DAWRE  171 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~  171 (301)
                      +..+|++++|+..+++++..     .|+++   ..+.++|.+|..+|+|++|+.++++++..     .|++|   ..+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44567888888888888763     34443   36777788888888888888888887764     24443   45777


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHhh-----CCCCHHH
Q 022205          172 LAEIYVSLQMYKQAAFCYEELILS-----QPTVPLY  202 (301)
Q Consensus       172 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  202 (301)
                      ||.+|..+|++++|+.+|++|+.+     .|++|.+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            888888888888888888887754     4666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.61  E-value=9.7e-08  Score=83.32  Aligned_cols=87  Identities=10%  Similarity=-0.006  Sum_probs=75.4

Q ss_pred             HcCChhHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCH---HHHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLET-----FMADH---DAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVP---LYHLAYA  207 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la  207 (301)
                      ..|++++|+..++++++.     .|+++   .++.+||.+|..+|+|++|+.++++++.+     .|++|   ..+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999985     45554   56889999999999999999999999965     35554   4689999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~  233 (301)
                      .+|..+|+   +++|+.+|++|+++.
T Consensus       390 ~~~~~qg~---~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          390 RLYMGLEN---KAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHhccC---HHHHHHHHHHHHHHH
Confidence            99999999   999999999999873

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.57  E-value=3.5e-07  Score=79.88  Aligned_cols=91  Identities=11%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCH---HH
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVP---LY  202 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~  202 (301)
                      ..-+..+|++++|+..++++++.     .|++   ..++.++|.+|..+|+|++|+.++++++.+     .|++|   ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999975     3455   457889999999999999999999999965     35554   46


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      +.++|.+|..+|+   +++|+.+|++|+++
T Consensus       374 l~nLa~~~~~~g~---~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGM---FPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence            8999999999999   99999999999976

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.40  E-value=4.5e-06  Score=58.88  Aligned_cols=88  Identities=16%  Similarity=0.030  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYE  190 (301)
Q Consensus       116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~~~~  190 (301)
                      .+...|.+.+..++.+..+.+++|.++.+..+...   ++..++..+..+ | ..-+..+.||..+++.|+|+.|..+++
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444444444455555555555555555544433   555555555544 3 233455555555555555555555555


Q ss_pred             HHHhhCCCCHHHH
Q 022205          191 ELILSQPTVPLYH  203 (301)
Q Consensus       191 ~al~~~p~~~~~~  203 (301)
                      .+|+..|++..+.
T Consensus        99 ~lL~~eP~n~QA~  111 (126)
T 1nzn_A           99 GLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHHCTTCHHHH
T ss_pred             HHHHhCCCCHHHH
Confidence            5555555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.37  E-value=1.4e-05  Score=57.62  Aligned_cols=120  Identities=12%  Similarity=0.097  Sum_probs=88.7

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          127 DNPLDPVLHKRRVAIAKAQGNF------PTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      ..|.+++.|..........|+.      ++-+..|++++..-|-.        ...|...|.. ...++.++|..+|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4677777777777777777777      77777888877766543        3456666644 5668999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205          193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA  252 (301)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~  252 (301)
                      +.+....+.+|...|..-.+.|+   ...|.+.+.+++.+.|.  ..-+...++.-.+.|
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k--~~~~le~a~~nl~~~  141 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAV--PLEMLEIALRNLNLQ  141 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCB--CHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCC--cHHHHHHHHHhhhcC
Confidence            88888888899999999999999   99999999999999884  334444444443433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.26  E-value=1.7e-05  Score=55.99  Aligned_cols=99  Identities=17%  Similarity=-0.008  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ---AAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILLA  222 (301)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~~~~A  222 (301)
                      ...+...|.+.+..++.+..+.+++|.++....+...   ++..++..+..+ | ..-..++.+|..++++|+   |.+|
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~---Y~~A   93 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh---HHHH
Confidence            4556777777888788889999999999999877665   999999998876 5 456789999999999999   9999


Q ss_pred             HHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          223 KKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       223 ~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                      +.+++.+++..|+ |..+.--...+..+
T Consensus        94 ~~~~~~lL~~eP~-n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           94 LKYVRGLLQTEPQ-NNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            9999999999996 76665544443333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.13  E-value=0.00026  Score=62.99  Aligned_cols=152  Identities=9%  Similarity=-0.052  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHhc-CCCHHHH
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGN---------FPTAIEWLNKYLETF-MADHDAW  169 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~l~~~-p~~~~~~  169 (301)
                      +...-..+.+.|++++|+..|++..... +-+...|..+..++...+.         .++|..+|++..... +-+..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3444466778999999999999998754 2356677777777765544         678999999887653 2257889


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205          170 RELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  248 (301)
Q Consensus       170 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~  248 (301)
                      ..+-..|.+.|++++|...|++..... +-+...|..+-..|.+.|+   +++|.+.|.+..+..-.++...+..+..++
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~---~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD---ADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999988653 2357778888899999999   999999999988753334677777777777


Q ss_pred             HHHHhhh
Q 022205          249 SAIAQLT  255 (301)
Q Consensus       249 ~~l~~~~  255 (301)
                      .+.++..
T Consensus       186 ~~~g~~d  192 (501)
T 4g26_A          186 MDTKNAD  192 (501)
T ss_dssp             HHTTCHH
T ss_pred             hhCCCHH
Confidence            7766533

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.08  E-value=6.7e-05  Score=54.18  Aligned_cols=120  Identities=14%  Similarity=-0.002  Sum_probs=77.5

Q ss_pred             CCCchhhHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205           94 FPESKRVGRLEGILLEAKGLW------AEAEKAYSSLLEDNPLD--------PVLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (301)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (301)
                      .|.+++.|..........|+.      ++-++.|++++..-|-.        ...|...+.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            366666666666666666666      66666666666654432        2244445543 44577888888888887


Q ss_pred             HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ..+...+.+|...|..-.++|+...|.+.+.+++...|..... ...|..-...|.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~  142 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQK  142 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence            7766667778888888888888888888888888877765543 233333344443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.96  E-value=0.00013  Score=53.73  Aligned_cols=134  Identities=11%  Similarity=0.065  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN---PL  130 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~  130 (301)
                      .|.++.+ ...++..|.|+.|+-....++....+++         .+...+|..++..++|..|...|++++...   +.
T Consensus        20 ~~~l~dq-ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDH-VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444 6678899999999999888776543322         367889999999999999999999997632   22


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      +......++.    .....       .... .+.+.+..+.++.||...+++++|+..++.+-. .-..+.+...+|..|
T Consensus        99 ~~s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             CCCccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            2221111110    00000       0011 134567778888888888888888888765321 234566667777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.83  E-value=0.00025  Score=52.28  Aligned_cols=116  Identities=13%  Similarity=-0.061  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CCH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM---ADH  166 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~  166 (301)
                      .+++--...+...|.|+.|+-....++....+++         .++..+|.+++..|+|..|...|++++....   ..+
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444455556666777777777666554322211         2556677777777777777777777665432   222


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      .....++.    ......       ... .+.+.++.+.++.||..+++   +++|+..++..
T Consensus       101 s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~---~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ---DKDAIAILDGI  148 (167)
T ss_dssp             ---------------------------C-CCCHHHHHHHHHHHHHHTTC---HHHHHHHHHTS
T ss_pred             Cccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC---HHHHHHHHhcC
Confidence            11111110    000000       011 13455788999999999999   99999998753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.67  E-value=0.001  Score=47.00  Aligned_cols=52  Identities=12%  Similarity=0.033  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          150 TAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                      +++..++..++.+|. .-+.++.||..+++.|+|+.|..+.+.+++..|+|..
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            344444444444432 2334444444444444444444444444444444433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.63  E-value=0.0028  Score=45.37  Aligned_cols=74  Identities=11%  Similarity=0.003  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205          165 DHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (301)
                      ++.+.+++|.++....+   ..+++..++..+...|. .-+.++.+|..++++|+   |.+|+.+.+..++..|+ |..+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---Y~~Ar~y~d~lL~~eP~-n~QA  113 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQV  113 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTCCC-CHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHH
Confidence            34445555555544432   23455555555554442 23344555555555555   55555555555555553 4444


Q ss_pred             hh
Q 022205          241 LF  242 (301)
Q Consensus       241 ~~  242 (301)
                      .-
T Consensus       114 ~~  115 (144)
T 1y8m_A          114 GA  115 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.61  E-value=0.0043  Score=44.46  Aligned_cols=79  Identities=8%  Similarity=-0.098  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205          129 PLDPVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (301)
Q Consensus       129 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  204 (301)
                      +-...+.++++.++.+..+.   .+++.+++..+...|. .-+..+.||..+++.|+|+.|..+.+.+|+..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            55678899999999988764   5799999999998885 4678899999999999999999999999999999987655


Q ss_pred             HHH
Q 022205          205 AYA  207 (301)
Q Consensus       205 ~la  207 (301)
                      ...
T Consensus       116 Lk~  118 (144)
T 1y8m_A          116 LKS  118 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.57  E-value=0.0012  Score=46.67  Aligned_cols=83  Identities=11%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205          165 DHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (301)
                      ++.+.+++|.++....+   ...++..++..+..+|.. -+.++.+|..++++|+   |.+|+++...+++..|+ |..+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd---Y~~Ar~y~d~lL~~eP~-N~QA  114 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQV  114 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTCTT-CHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCC-CHHH
Confidence            58899999999988764   458999999999988854 6789999999999999   99999999999999996 7766


Q ss_pred             hhhHHHHHHHH
Q 022205          241 LFGICLCSSAI  251 (301)
Q Consensus       241 ~~~l~~~~~~l  251 (301)
                      .--...+..++
T Consensus       115 ~~Lk~~Ie~ki  125 (134)
T 3o48_A          115 GALKSMVEDKI  125 (134)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55444444443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.30  E-value=0.057  Score=46.13  Aligned_cols=167  Identities=12%  Similarity=-0.031  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh-----HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHH----
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV-----GRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPV----  133 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~----  133 (301)
                      -.....+|..+...|+.++-..++.......+.-+.+     ...+-..+.. -+..+.-++.+..+++...+.-.    
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788999999999998888887665544332222     1122222222 35556666667766653322211    


Q ss_pred             --HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---CCCHH-
Q 022205          134 --LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL-  201 (301)
Q Consensus       134 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~-  201 (301)
                        .-..+|..|...|+|.+|.+.+.+.++....  +    .+.+..-..+|...+++.++...+.++....   +.+|. 
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence              2347899999999999999999988875432  2    3556677888999999999999999987543   23443 


Q ss_pred             ---HHHHHHHHHH-HcCCCCcHHHHHHHHHHHhccc
Q 022205          202 ---YHLAYADVLY-TLGGVDNILLAKKYYASTIDLT  233 (301)
Q Consensus       202 ---~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~  233 (301)
                         ....-|..+. ..++   |..|..+|-++++-.
T Consensus       179 ~a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~f  211 (394)
T 3txn_A          179 QGALDLQSGILHAADERD---FKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccC---HHHHHHHHHHHHhcc
Confidence               3445577788 7899   999999999998543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0036  Score=57.99  Aligned_cols=112  Identities=13%  Similarity=-0.053  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChhHHHHHHHHHHHh--------cCCC----------HHHHHHH
Q 022205          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--AQ-GNFPTAIEWLNKYLET--------FMAD----------HDAWREL  172 (301)
Q Consensus       114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~l  172 (301)
                      ++.|+..+++....+|.....+. .+.+..  .. .+--+|++.+.+.++.        .+.+          ...+..-
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            46677777777777765443222 222111  11 2233566666666532        1222          1233444


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      +..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+   |+.|+-.+.-+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence            6666677778888888888888888888888888888888888   77777666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0031  Score=58.42  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             hCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHHH--Hc-CCHHHHHHHHHHHHh--------cCCCCH----------H
Q 022205           76 DCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILLE--AK-GLWAEAEKAYSSLLE--------DNPLDP----------V  133 (301)
Q Consensus        76 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~--~~-~~~~~A~~~~~~al~--------~~p~~~----------~  133 (301)
                      ..++ ++.|+.+++++...+|.....+ ..+.+..  .. .+--+|+....+.++        ..+.+.          .
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 5889999999999988654322 2222222  11 233457777776664        123332          2


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      .+..-+..+...|+++-|+.+.++++...|.+..+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33444566677999999999999999999999999999999999999999999776654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.05  Score=40.69  Aligned_cols=99  Identities=15%  Similarity=0.003  Sum_probs=66.3

Q ss_pred             HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      ++.|+++.|..+.+.+     ++...|..+|......|+++-|..+|+++-.        +..+..+|...|+.+.-...
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence            6678888888887654     5677888888888888888888888887632        23455566677776655544


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (301)
Q Consensus       155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  191 (301)
                      .+.+.... +    +.....+++..|+++++++.|.+
T Consensus        83 a~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           83 QNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44443332 1    22334556677888888777754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.85  E-value=0.056  Score=47.72  Aligned_cols=81  Identities=17%  Similarity=0.024  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC  247 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~  247 (301)
                      .+..||++......+..|..+|.+|..+.|+++..+..+|.+....|+   .-+|+-+|.+++.... +...+.-++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~---~l~a~y~y~rsl~~~~-Pf~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKF-PFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSB-CCHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc---cHHHHHHHHHHHhcCC-CChhHHHHHHHH
Confidence            455677777777777888888888888888888888888888888777   7778888888877655 367777777766


Q ss_pred             HHHHH
Q 022205          248 SSAIA  252 (301)
Q Consensus       248 ~~~l~  252 (301)
                      .....
T Consensus       230 f~~~~  234 (497)
T 1ya0_A          230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            65543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.46  E-value=0.021  Score=50.39  Aligned_cols=78  Identities=14%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      .+..+|++......+..|..+|.+|....|++..++..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            344566666666777777777777777777777777777777777777777777777777665556667766666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.16  Score=37.93  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=76.5

Q ss_pred             CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (301)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  175 (301)
                      .++...+.+   ....|+++.|.+..+..     ++...|..+|......|+++-|+.+|.++-     +   +..+..+
T Consensus         6 ~D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~L   69 (177)
T 3mkq_B            6 QDPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFL   69 (177)
T ss_dssp             SCHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHH
T ss_pred             CChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHH
Confidence            344444443   46779999999887765     568899999999999999999999998753     3   2234455


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      |...|+.+.-.+.-+.+.....     +.....+++.+|+   ++++++.|.+.=+.
T Consensus        70 y~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGd---v~~~i~lL~~~~r~  118 (177)
T 3mkq_B           70 YLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNS---TKERSSIFAEGGSL  118 (177)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTC---HHHHHHHHHHTTCH
T ss_pred             HHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCC---HHHHHHHHHHCCCh
Confidence            5666776655555544443322     1223455778888   88888888665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.37  E-value=0.14  Score=47.95  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             HHhCCChHHHHH-HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205           74 AMDCQCLDVAKD-CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (301)
Q Consensus        74 ~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (301)
                      .+..+++++|.. ++..    -|+ ..........+...|.+++|+...+        ++...   .......|++++|.
T Consensus       609 ~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~  672 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR  672 (814)
T ss_dssp             HHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence            356778887766 4310    110 1111344455556666666654432        11111   22344566666666


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205          153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (301)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  192 (301)
                      +..+.     .+++..|..+|..+...++++.|..+|.++
T Consensus       673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            65432     345666666666666666666666666654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.27  E-value=0.12  Score=44.28  Aligned_cols=61  Identities=15%  Similarity=-0.002  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~  231 (301)
                      +...++..+...|++.+|+..+..++..+|-+-.+|..+-.+++..|+   ..+|+..|+++-+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence            345677888889999999999999999999999999999999999999   9999999888654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.24  E-value=0.15  Score=40.82  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=71.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~  187 (301)
                      +++.|+.++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|.....-..+..+       -.|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~   79 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQ   79 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHH
Confidence            45567788888888888888888888888888888888888888888888888887754322111111       01111


Q ss_pred             HHHHHHh--hCC---CCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          188 CYEELIL--SQP---TVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       188 ~~~~al~--~~p---~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      .=..++.  ..|   ..+   .....-+......|+   .++|...-.++++..|.
T Consensus        80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~---~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCcc
Confidence            1111111  111   112   223333455556677   88888888888777664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.14  E-value=0.15  Score=47.76  Aligned_cols=105  Identities=14%  Similarity=0.001  Sum_probs=61.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHc
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY--------LETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      ....|++++|.+..+     ..++...|..+|..+...|+++.|+.+|.++        +.....+...+..++......
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            345567777766543     3345666777777777777777777776663        112244555566666666667


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                      |++..|..+|.+.     .++   .....+|...++   +++|+..-++
T Consensus       737 ~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~---~~~A~~lA~~  774 (814)
T 3mkq_A          737 GKFNLAFNAYWIA-----GDI---QGAKDLLIKSQR---FSEAAFLGST  774 (814)
T ss_dssp             TCHHHHHHHHHHH-----TCH---HHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             CchHHHHHHHHHc-----CCH---HHHHHHHHHcCC---hHHHHHHHHH
Confidence            7777766665432     111   123355666666   7777665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.11  E-value=0.16  Score=43.41  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             HHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205           73 AAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA-EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (301)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (301)
                      .....|+.+.|...+..++......+-.-..       ...|-.+ ...++..      ...+...++..+...|++.++
T Consensus       124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          124 HAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHH
Confidence            3445677777888888887766432211000       0111111 1111111      112445677888899999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      +..+..++..+|.+-.+|..+-.++...|+..+|+..|+++-.
T Consensus       191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.7  Score=40.22  Aligned_cols=166  Identities=13%  Similarity=0.063  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH-H--HH-HcCCHHHHHHHHHHHHhcC------CC-
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-L--LE-AKGLWAEAEKAYSSLLEDN------PL-  130 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~--~~-~~~~~~~A~~~~~~al~~~------p~-  130 (301)
                      ....+...+...+...|+++.....+..+.+..+....+...+.. +  +. .....+.  ......+..-      -- 
T Consensus        54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kif  131 (445)
T 4b4t_P           54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIF  131 (445)
T ss_dssp             TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCC
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchH
Confidence            345667777788888899988877776666554433222211111 1  11 1122111  1111222211      00 


Q ss_pred             ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-C-CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHh---hCC
Q 022205          131 ----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-M-AD----HDAWRELAEIYVSLQMYKQAAFCYEELIL---SQP  197 (301)
Q Consensus       131 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p-~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p  197 (301)
                          .......|+.++...|++.+|...+.....-. . .+    .+.+.....+|...+++..|...+.++..   ..+
T Consensus       132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~  211 (445)
T 4b4t_P          132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP  211 (445)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence                23456789999999999999999999876432 1 11    46778889999999999999999998742   234


Q ss_pred             CCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          198 TVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       198 ~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      .++    ..+...|.++...++   |.+|..+|..++..
T Consensus       212 ~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          212 KYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQT  247 (445)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhc
Confidence            444    356677888999999   99999999999875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.12  Score=44.96  Aligned_cols=98  Identities=12%  Similarity=-0.064  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHH----H
Q 022205          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----Y  202 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~  202 (301)
                      ..++..+|..|...|+++.|.+.|.++.......   .+.+..+..++...++|..+..++.++-...  ..++.    .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            3467778888888888888888888877765433   5677777788888888888888888876442  22222    3


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      ....|.++...++   |..|..+|..++.-
T Consensus       211 k~~~gl~~l~~r~---f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          211 KTYYGIHCLAVRN---FKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHGGGGTSC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCh---HHHHHHHHHHHhcc
Confidence            3344666667777   88888888887654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.71  E-value=0.41  Score=35.37  Aligned_cols=160  Identities=14%  Similarity=0.017  Sum_probs=99.0

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----c-------------CCC
Q 022205           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----D-------------NPL  130 (301)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~-------------~p~  130 (301)
                      .-++..++-.|.+..++-++..     -+...+.+..+.|+...++|..|+..+++.+.    .             +|.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            3456777778888887766532     34555667778888888889999888888883    1             233


Q ss_pred             CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH-----------HHH------HcccHHHHHH-----
Q 022205          131 DPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE-----------IYV------SLQMYKQAAF-----  187 (301)
Q Consensus       131 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~-----------~~~------~~~~~~~A~~-----  187 (301)
                      +.+ .+..+|.++...|+-++|+.++.......|-.+.+-..+-.           +..      +...+....+     
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~  191 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL  191 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc
Confidence            444 45567888888888888888888888887754433211100           000      0011111111     


Q ss_pred             ---HHHHHHhhCCCCHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          188 ---CYEELILSQPTVPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       188 ---~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                         ..++-...-|.-... ....+.-++.+|-   .+++...|...-+.+|.
T Consensus       192 s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~---~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          192 SPSLVKKYMEHVPGIGSYFISNAARRYFNLGM---NDKSKACFELVRRKDPM  240 (242)
T ss_dssp             CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT
T ss_pred             cHHHHHHHHHhCCCchhHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCC
Confidence               122222233444332 3345677888888   89999998888888873

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.69  E-value=0.38  Score=38.46  Aligned_cols=121  Identities=12%  Similarity=0.006  Sum_probs=86.1

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (301)
                      ...++.|+.++|+..+...++..|.+......+..++.-.|+++.|...++.+.+.+|+.......+..+       =.|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence            3467889999999999999999999999999999999999999999999999999999865532111110       011


Q ss_pred             HHHHHHHHH-----hcCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205          152 IEWLNKYLE-----TFMADHDAWR---ELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       152 ~~~~~~~l~-----~~p~~~~~~~---~lg~~~~~~~~~~~A~~~~~~al~~~p~~  199 (301)
                      ...=.+.+.     ..+..+..|.   .-+......|+.++|...-..+++..|..
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            111111111     1123334443   33555566799999999999999888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.54  E-value=0.49  Score=35.00  Aligned_cols=136  Identities=17%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----C-------------CCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----F-------------PES-KRVGRLEGILLEAKGLWAEAEKAYSSLL  125 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~-------------p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al  125 (301)
                      .+..+..+.|+...+++..|+.+++.++.-    +             |.+ .-.+..+|.++...|+.++|+.++....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            344444588999999999999999999932    1             222 2345678999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHH--H--------HHcCChhHHHHHHH---------------HHHHhcCCCHHH-HHHHHHHHHHc
Q 022205          126 EDNPLDPVLHKRRVAI--A--------KAQGNFPTAIEWLN---------------KYLETFMADHDA-WRELAEIYVSL  179 (301)
Q Consensus       126 ~~~p~~~~~~~~l~~~--~--------~~~g~~~~A~~~~~---------------~~l~~~p~~~~~-~~~lg~~~~~~  179 (301)
                      ..+|-.+.+-..+-.-  .        ...|+-.--.+.+.               +..+.-|.-... ....+..|+..
T Consensus       142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l  221 (242)
T 3kae_A          142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL  221 (242)
T ss_dssp             HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence            9998765543221110  0        00111111111122               222222333222 23567788999


Q ss_pred             ccHHHHHHHHHHHHhhCCCC
Q 022205          180 QMYKQAAFCYEELILSQPTV  199 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~  199 (301)
                      |..++...+|...-..+|..
T Consensus       222 g~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          222 GMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             TCHHHHHHHHHHHHHHSTTT
T ss_pred             ccchhHHHHHHHHHhcCCCc
Confidence            99999999999998888853

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.047  Score=48.05  Aligned_cols=126  Identities=12%  Similarity=0.016  Sum_probs=59.2

Q ss_pred             HHHHhCCChHHHHHHHHHHHH--h---------CCCchhhHHHHHHHHHHcCCHHHHH----------HHHHHHHh----
Q 022205           72 IAAMDCQCLDVAKDCIKVLQK--Q---------FPESKRVGRLEGILLEAKGLWAEAE----------KAYSSLLE----  126 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~al~----  126 (301)
                      ..+++.+++++|..+...++.  .         ++-...+|+..+.++...|+.....          ..+-.+++    
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            446677899998888765551  1         2234556777777777777665432          22222222    


Q ss_pred             -cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205          127 -DNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       127 -~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  197 (301)
                       .|+. ....+..+-..|...+.+++|..+..++.  +|.+       ...++.+|.++.-+++|.+|..++..|+...|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence             2222 24477788899999999999999999885  5533       45677899999999999999999999998877


Q ss_pred             CC
Q 022205          198 TV  199 (301)
Q Consensus       198 ~~  199 (301)
                      .+
T Consensus       302 ~~  303 (523)
T 4b4t_S          302 HN  303 (523)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.42  E-value=0.57  Score=46.03  Aligned_cols=141  Identities=10%  Similarity=-0.009  Sum_probs=97.9

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------
Q 022205           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------------------  127 (301)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------  127 (301)
                      +...++..+.++.+..    .....|.++...+++|.++...|++++|..+|+++-.-                      
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3444555666655543    34456778888899999999999999999999887321                      


Q ss_pred             -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205          128 -NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-ADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (301)
Q Consensus       128 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (301)
                       ....+..|..+..++...|.++.+++..+.+++..+ ++.    ..|..+-..+...|+|++|...+...-.. ..-..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~  972 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKS  972 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHH
Confidence             111234677888899999999999999999998764 333    26788889999999999998776543211 12234


Q ss_pred             HHHHHHHHHHHcCC
Q 022205          202 YHLAYADVLYTLGG  215 (301)
Q Consensus       202 ~~~~la~~~~~~~~  215 (301)
                      .+..+-......|.
T Consensus       973 cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          973 CLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            44445444444444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.40  E-value=0.24  Score=47.36  Aligned_cols=98  Identities=9%  Similarity=-0.123  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELA  173 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg  173 (301)
                      ..+..+-..+.+.|+.++|...|...-..    -.-+...|..+...+.+.|++++|..+|++..+.. .-|..+|..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            34566677788889999999888665432    23357788888888899999999999998887653 22577788888


Q ss_pred             HHHHHccc-HHHHHHHHHHHHhhC
Q 022205          174 EIYVSLQM-YKQAAFCYEELILSQ  196 (301)
Q Consensus       174 ~~~~~~~~-~~~A~~~~~~al~~~  196 (301)
                      .++.+.|+ .++|..+|++.....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888887 477888888887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.34  E-value=0.47  Score=45.50  Aligned_cols=99  Identities=10%  Similarity=-0.085  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR  138 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  138 (301)
                      -..|..+...+.+.|+.++|..+|......    ..-+...|..+-..+.+.|++++|.+.|+...... .-+...|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            345777788899999999999999776532    23466677788888999999999999999998754 2357778888


Q ss_pred             HHHHHHcCCh-hHHHHHHHHHHHhc
Q 022205          139 VAIAKAQGNF-PTAIEWLNKYLETF  162 (301)
Q Consensus       139 ~~~~~~~g~~-~~A~~~~~~~l~~~  162 (301)
                      ..++.+.|+. ++|..+|++..+..
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            8899999985 78889999988764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.17  Score=43.88  Aligned_cols=100  Identities=12%  Similarity=-0.056  Sum_probs=79.2

Q ss_pred             chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCH----H
Q 022205           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADH----D  167 (301)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~----~  167 (301)
                      -..++..+|..+...|++++|.+.|.++.....   .-.+.+.....++...+++..+...+.++.....  .++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            445788999999999999999999999887433   2356788888999999999999999999876532  222    2


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          168 AWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      .....|.++...++|..|...|-.++...
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            34456777788899999999999887654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.96  E-value=0.52  Score=40.19  Aligned_cols=138  Identities=15%  Similarity=-0.035  Sum_probs=92.0

Q ss_pred             CChHHHHHHHHHHHHhCCCchhh------HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHc
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRV------GRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQ  145 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~  145 (301)
                      +..+.-+.++...++........      -..+|..|+..|+|.+|...+.+....-  .++    .+++..-..+|...
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~  152 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL  152 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence            44455555555555533222222      2368999999999999999998887732  122    33666778889999


Q ss_pred             CChhHHHHHHHHHHHhc---CCCHH----HHHHHHHHHH-HcccHHHHHHHHHHHHhhCCC--CH---HHHHHHHHHHHH
Q 022205          146 GNFPTAIEWLNKYLETF---MADHD----AWRELAEIYV-SLQMYKQAAFCYEELILSQPT--VP---LYHLAYADVLYT  212 (301)
Q Consensus       146 g~~~~A~~~~~~~l~~~---p~~~~----~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~  212 (301)
                      |++.++...+.++....   +.+|.    ....-|.++. ..++|..|..+|-.++.-...  ++   .+...++.+...
T Consensus       153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl  232 (394)
T 3txn_A          153 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM  232 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            99999999999887653   23333    3455688888 899999999999988743321  12   233445555555


Q ss_pred             cCC
Q 022205          213 LGG  215 (301)
Q Consensus       213 ~~~  215 (301)
                      .++
T Consensus       233 ~~~  235 (394)
T 3txn_A          233 LGQ  235 (394)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            565

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.081  Score=46.57  Aligned_cols=128  Identities=11%  Similarity=-0.002  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCChhHHH----------HHHHHHHH-
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLE-----------DNPLDPVLHKRRVAIAKAQGNFPTAI----------EWLNKYLE-  160 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~l~-  160 (301)
                      +.-..+...+++++|.++....+.           .|+-...+|+.++.++...|+.....          ..+-.+++ 
T Consensus       141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt  220 (523)
T 4b4t_S          141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI  220 (523)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence            334445667889998888776651           23444557888888887777765532          22222222 


Q ss_pred             ----hcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205          161 ----TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (301)
Q Consensus       161 ----~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~  228 (301)
                          .++.. ...+..+-..|...+.+++|.....++.  .|..       ...++.+|.++...++   |.+|.+++..
T Consensus       221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~  295 (523)
T 4b4t_S          221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIA  295 (523)
T ss_dssp             CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence                12221 4567788899999999999999999885  3422       3467788999999999   9999999999


Q ss_pred             HhcccCC
Q 022205          229 TIDLTGG  235 (301)
Q Consensus       229 al~~~p~  235 (301)
                      |++..|.
T Consensus       296 A~rkap~  302 (523)
T 4b4t_S          296 AIRKAPH  302 (523)
T ss_dssp             HTSSCSC
T ss_pred             HHHhCCc
Confidence            9999885

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.32  E-value=2.4  Score=36.82  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH---hcCCCH--
Q 022205           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE---TFMADH--  166 (301)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~--  166 (301)
                      .+....++.++...|++.+|...+.......  ..+    ..++.....++...+++.+|...++++..   ..+.++  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            3455778999999999999999999876421  122    34777788899999999999999998743   233343  


Q ss_pred             --HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          167 --DAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       167 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                        ..+...|.++...++|.+|..+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              35567888899999999999999998854

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.90  E-value=7.2  Score=35.44  Aligned_cols=138  Identities=12%  Similarity=0.052  Sum_probs=88.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +.......+.+.|...+.......+-+..    .+..++.-....+...++...+.+.....+++.......+ ..+..|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHHHCC
Confidence            44444456888899888877654433333    2222332333344366777888776654443333333334 445679


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +++.|...|...-...+..+...+.+|.++..+|+   .++|..+|+++..  +.    .+||+. +...+|.
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~--~~----~fYg~l-Aa~~Lg~  362 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ--QR----GFYPMV-AAQRIGE  362 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT--SC----SHHHHH-HHHHTTC
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc--CC----ChHHHH-HHHHcCC
Confidence            99999999977655334567788999999999999   9999999999875  32    355543 4455554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.04  E-value=1.3  Score=43.51  Aligned_cols=116  Identities=10%  Similarity=-0.107  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------------------c--
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------------------F--  162 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------------------~--  162 (301)
                      ...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.-                    .  
T Consensus       819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~  894 (1139)
T 4fhn_B          819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH  894 (1139)
T ss_dssp             HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred             HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence            334455566655543    33456677777788899999999999999998875210                    0  


Q ss_pred             -CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          163 -MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPL----YHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       163 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                       ..-+..|..+..++...+.++.+++..+.|+...+ ++..    .|.++=..+..+|+   |++|...+.
T Consensus       895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~  962 (1139)
T 4fhn_B          895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALM  962 (1139)
T ss_dssp             CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHH
T ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHH
Confidence             11134566677778888888888888888887654 3332    56666677788888   888866664

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.20  E-value=11  Score=34.35  Aligned_cols=160  Identities=10%  Similarity=-0.034  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  141 (301)
                      +.+.....++...+..+...++...+.......+++.... -++...++.|++..|..++..+-...+......+.+|..
T Consensus       250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra  328 (618)
T 1qsa_A          250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADL  328 (618)
T ss_dssp             HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH-HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHH
Confidence            3444555666666666645666777776655444333332 333345567999999998887655444567778889999


Q ss_pred             HHHcCChhHHHHHHHHHHHhc--------------------CC---C-----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETF--------------------MA---D-----HDAWRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~--------------------p~---~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +...|+.++|..+|..+....                    +.   .     ...-...+..+...|....|...+..++
T Consensus       329 ~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~  408 (618)
T 1qsa_A          329 LLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV  408 (618)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence            999999999999888865411                    00   0     0012345566777888888888887776


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205          194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (301)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~  227 (301)
                      ...  ++.-...++.+....|.   +..++....
T Consensus       409 ~~~--~~~~~~~la~~a~~~~~---~~~~v~~~~  437 (618)
T 1qsa_A          409 KSK--SKTEQAQLARYAFNNQW---WDLSVQATI  437 (618)
T ss_dssp             TTC--CHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             hcC--CHHHHHHHHHHHHHCCC---hHHHHHHHH
Confidence            532  24444566777777777   766665443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.23  E-value=5.8  Score=38.16  Aligned_cols=35  Identities=11%  Similarity=-0.148  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCHH
Q 022205          167 DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPL  201 (301)
Q Consensus       167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~  201 (301)
                      ..|.....++...+-++.++...+.|+.. .++++.
T Consensus       898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence            46677888888888999999999998864 345544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.25  E-value=16  Score=29.95  Aligned_cols=118  Identities=8%  Similarity=0.021  Sum_probs=64.7

Q ss_pred             HHHhCCChHHHHHHHHHHHHhC----C--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 022205           73 AAMDCQCLDVAKDCIKVLQKQF----P--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHKRRVAI  141 (301)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~  141 (301)
                      ..+..|+|=+|.+.++.+..+.    .  +.....+.-+..+...|++.-|.+...-.++     ..|-+......+..+
T Consensus        22 ~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           22 NKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3455566666666665555432    1  1222334445555666776666554333332     123344455556655


Q ss_pred             HHHcCChh-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205          142 AKAQGNFP-TAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYE  190 (301)
Q Consensus       142 ~~~~g~~~-~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~  190 (301)
                      +......+ .=..+.++++...       -.+|..+..+|..|...|++.+|..+|-
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            55433211 2234445554432       1467888888888888888888888774

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.06  E-value=31  Score=33.19  Aligned_cols=105  Identities=12%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------------hhCC
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI---------------------LSQP  197 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------------~~~p  197 (301)
                      ...+...|.++-+    ...+...|.++..-+.+|.++...|++++|..+|++|-                     ...+
T Consensus       817 ~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~  892 (950)
T 4gq2_M          817 VEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH  892 (950)
T ss_dssp             HHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred             HHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence            3344444544432    22334445555555555555555555555555555432                     0112


Q ss_pred             CC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc-CC---CchhHhhhHHHHHHH
Q 022205          198 TV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT-GG---KNTKALFGICLCSSA  250 (301)
Q Consensus       198 ~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~l~~~~~~  250 (301)
                      ..  ..+|.....++...+-   ++-++.+.+.|+..- ++   .....|..+..++..
T Consensus       893 ~~~~~~YY~hV~~LFE~~~a---~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a  948 (950)
T 4gq2_M          893 QNLLSCYYLHLSKKLFEESA---YIDALEFSLLADASKETDDEDLSIAITHETLKTACA  948 (950)
T ss_dssp             CSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence            22  3478888999999999   999999999999753 32   223455555554443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=80.98  E-value=12  Score=26.74  Aligned_cols=56  Identities=14%  Similarity=-0.023  Sum_probs=38.6

Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  195 (301)
                      .....+|+-++-.+.+...+..++-+|+....+|.+|.+.|+..+|-..+.+|.+.
T Consensus        99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            34556677777777777766666666777777777777777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 3/182 (1%)

Query: 51  NDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110
           +  +K   L P+    Y  +     + +  D A           P    V      +   
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
           +GL   A   Y   +E  P  P  +       K +G+   A +  N  L       D+  
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230
            LA I       ++A   Y + +   P     H   A VL   G +     A  +Y   I
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE---ALMHYKEAI 366

Query: 231 DL 232
            +
Sbjct: 367 RI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 3e-11
 Identities = 35/161 (21%), Positives = 59/161 (36%)

Query: 54  KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113
            +  +L P+   ++  ++    +   +D+A D  +   +  P            L+ KG 
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173
            AEAE  Y++ L   P           I + QGN   A+    K LE F     A   LA
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            +       ++A   Y+E I   PT    +    + L  + 
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 3/172 (1%)

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+    +  +         + +A    +      P         G +L+   ++  A  A
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y   L  +P   V+H     +   QG    AI+   + +E      DA+  LA       
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
              +A  CY   +   PT        A++    G ++    A + Y   +++
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE---AVRLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 26/151 (17%), Positives = 44/151 (29%)

Query: 64  WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSS 123
           + +   +         L+ AK C     +  P         G +  A+G    A   +  
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183
            +  +P     +     + K    F  A+    + L            LA +Y    +  
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            A   Y   I  QP  P  +   A+ L   G
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 101 GRLE-GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159
           G +E        G +  AE+    L    P +  +     +I         +  +    +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCY 189
           +      +A+  L  +Y      ++A   Y
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 9/67 (13%), Positives = 20/67 (29%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
            G+F  A     +       +      L+ I+   +   ++A      I   P +   + 
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 205 AYADVLY 211
              +V  
Sbjct: 72  NLGNVYK 78

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169
           ++G   +A +     ++ +P D  L    + +    G+F  A E L + ++ F       
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 170 RELAEIYVSLQMYKQAAFCY-EELILSQPTVPLYHLAYADVLYTLGGVD 217
            +L  +  + Q  K  A       +L +       L   ++       +
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 10/86 (11%), Positives = 24/86 (27%)

Query: 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201
           A ++G    A+E L + ++    D        E+      +++A     + I   P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 202 YHLAYADVLYTLGGVDNILLAKKYYA 227
                  ++       +         
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAK 91

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161
           + +G  L     + EA   Y   +  NPL  V +  R            A+    + LE 
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

Query: 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221
                 A   L +  + ++ Y +A    +             L + D + +      + +
Sbjct: 68  DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE---QRLNFGDDIPS-----ALRI 119

Query: 222 AKKYYASTID 231
           AKK   ++I+
Sbjct: 120 AKKKRWNSIE 129

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 33/108 (30%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211
            +  A   LA  + +  + +QA     + +   P          +   
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 9/179 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +   +   ++AE  Y    +  P +   + +   +A ++G+  T I +  + +     
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAK 223
              A   L +           +    +            + +   +Y    ++ +  L +
Sbjct: 219 FPAASTNLQKAL----SKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLRE 274

Query: 224 KYYASTIDLTGGKNTKALFGICLCSSAIAQL----TKGRNKEDKESPELQSLAAAALEK 278
           K      +L   K   +   + +    + QL          E     + + L    L  
Sbjct: 275 KLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLA 333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+L   K  W  A  A+S++ + +     +      +     N   A +   + +    
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
               A+ +   +Y   + Y  A    +E ++      L       + + L
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.91
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.66
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.64
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.31
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.19
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.04
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.62
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.57
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.49
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.17
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.1
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.46
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.8
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.01

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.9e-26  Score=191.85  Aligned_cols=206  Identities=17%  Similarity=0.105  Sum_probs=186.1

Q ss_pred             CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (301)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (301)
                      +..+.+.......+..       +|+.+.++..+|.++...|++++|+..+.++....|..+..+..+|.++...|++++
T Consensus       183 ~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  255 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTL-------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL  255 (388)
T ss_dssp             TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHHHHHHh-------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHH
Confidence            3444444444444433       677888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.++..+..+|.++...|++++|+.+|+++++++
T Consensus       256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |+++.++..+|.++...|+   +++|+.+|+++++++|+ +..+++++|.++..+++
T Consensus       336 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         336 PEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            9999999999999999999   99999999999999996 99999999999887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-24  Score=181.26  Aligned_cols=193  Identities=11%  Similarity=0.105  Sum_probs=141.6

Q ss_pred             HhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Q 022205           33 KLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (301)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (301)
                      ....++.++++......+..       +|.++.+|..+|.++...|++++|+.++.+++..+|+++..+..+|.++...|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            34556777777777777766       77888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCC---------------------------------------------------HHHHHHHHHH
Q 022205          113 LWAEAEKAYSSLLEDNPLD---------------------------------------------------PVLHKRRVAI  141 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~~---------------------------------------------------~~~~~~l~~~  141 (301)
                      ++++|+..+++++..+|..                                                   +.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            8888888887776655432                                                   3345566666


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~  221 (301)
                      +...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|+   +++
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~  258 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HRE  258 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC---HHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666   666


Q ss_pred             HHHHHHHHhcccCC
Q 022205          222 AKKYYASTIDLTGG  235 (301)
Q Consensus       222 A~~~~~~al~~~p~  235 (301)
                      |+.+|+++++++|+
T Consensus       259 A~~~~~~al~l~p~  272 (323)
T d1fcha_         259 AVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCc
Confidence            66666666666664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8e-25  Score=183.14  Aligned_cols=188  Identities=14%  Similarity=0.065  Sum_probs=174.3

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      .++.|..++..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|.+++..+|++..++..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcC-------------------------------------------------C--CHHHHHHHHHH
Q 022205          147 NFPTAIEWLNKYLETFM-------------------------------------------------A--DHDAWRELAEI  175 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p-------------------------------------------------~--~~~~~~~lg~~  175 (301)
                      ++++|+..+++++..+|                                                 +  ++.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            99999888877655443                                                 2  25567889999


Q ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205          176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~  255 (301)
                      +...|++++|+.+|++++..+|+++.+|..+|.++...|+   +++|+.+|+++++++|+ +..+++++|.++..+++..
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhccccccc---chhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999999999999999999999   99999999999999996 9999999999999999866


Q ss_pred             ccC
Q 022205          256 KGR  258 (301)
Q Consensus       256 ~~~  258 (301)
                      ++.
T Consensus       258 ~A~  260 (323)
T d1fcha_         258 EAV  260 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.7e-24  Score=180.83  Aligned_cols=193  Identities=17%  Similarity=0.114  Sum_probs=186.1

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      .|.....+..+|..+...|++++|...+.+++..+|+++.++..+|.++...|++++|+..++++...+|.....+..+|
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~  219 (301)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.++..+..+|.++...|+   +
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~  321 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---I  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---H
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC---H
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205          220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      ++|+..|+++++++|+ +..+++.+|.++..+|+..+
T Consensus       322 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999996 99999999999998887443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-24  Score=180.71  Aligned_cols=192  Identities=11%  Similarity=0.071  Sum_probs=179.6

Q ss_pred             cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      ..+|+...++..++.++...+.+++|+.++++++..+|++..+|..+|.++...| ++++|+..+++++..+|++..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            4478888999999999999999999999999999999999999999999999987 599999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  216 (301)
                      .+|.++..+|++++|+..++++++.+|++..+|.++|.++...|++++|+.+|+++++++|.+..+|.++|.++...+..
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988762


Q ss_pred             ---CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          217 ---DNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       217 ---~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                         +.+++|+..+.++++++|+ +..+|..++.++..
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD  232 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT
T ss_pred             chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh
Confidence               2368999999999999996 89899888766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.8e-22  Score=164.87  Aligned_cols=219  Identities=10%  Similarity=0.114  Sum_probs=191.3

Q ss_pred             cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhH
Q 022205           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (301)
Q Consensus        23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (301)
                      .++.++..+.... ...+.++......+.-       +|.+..+|..+|.++...| ++++|+..+++++..+|++..+|
T Consensus        44 ~a~~~~~~~~~~~-e~~~~Al~~~~~ai~l-------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          44 DVYDYFRAVLQRD-ERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             HHHHHHHHHHHHT-CCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CchHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            4555565554443 5678888888887766       9999999999999999876 58999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc
Q 022205          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (301)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~  181 (301)
                      ..+|.++...|++++|+..+.+++..+|.+..+|..+|.++...|++++|+..++++++++|.+..+|+++|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhhHHHHHHHHHh
Q 022205          182 ------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       182 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l~~  253 (301)
                            +++|+..+.+++.++|++..+|..++.++.. ..   ..++...+.+++++.|+ .+..++..++.++....+
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~---~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~  270 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RG---LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE  270 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TC---GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cC---hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence                  7899999999999999999999999988654 44   67888999999999987 445555666766665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-21  Score=158.66  Aligned_cols=174  Identities=14%  Similarity=0.022  Sum_probs=151.5

Q ss_pred             CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (301)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  138 (301)
                      .++....+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            35578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------------
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL------------------------  194 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------------  194 (301)
                      |.++...|++++|+..|+++++.+|+++.....++.++...+..+.+.........                        
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988877777666665544433333333222                        


Q ss_pred             ------------hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          195 ------------SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       195 ------------~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                                  ..|....+++.+|.++...|+   +++|+.+|++++..+|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCC
Confidence                        223334578889999999999   99999999999999996

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4e-18  Score=137.35  Aligned_cols=153  Identities=17%  Similarity=0.028  Sum_probs=134.0

Q ss_pred             ChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205           79 CLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (301)
Q Consensus        79 ~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (301)
                      +.+.++..+++++...+    ..+.+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34566666777776533    45678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p  234 (301)
                      |+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+......++.++...+.   .+.+...........+
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE---KQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh---HHHHHHHHHHhhccch
Confidence            9999999999999999999999999999999999999999999999988888888888877   6655555555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.6e-19  Score=124.03  Aligned_cols=107  Identities=20%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      ..|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..+.++++.+|+++.+|+.+|.++..+|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205          183 KQAAFCYEELILSQPTVPLYHLAYADV  209 (301)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~  209 (301)
                      ++|+.+|+++++++|+++.++..++.+
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            555555555555555555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=5.6e-19  Score=148.20  Aligned_cols=186  Identities=11%  Similarity=-0.084  Sum_probs=147.3

Q ss_pred             CchhHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCchhhH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRVG-RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  136 (301)
                      +|.+..+|..+|.++...+  ++++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|++..+|.
T Consensus       103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            6777778887777776665  47788888888888888777665 46677787888888888888888888888888888


Q ss_pred             HHHHHHHHcCChhHH------------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHH
Q 022205          137 RRVAIAKAQGNFPTA------------------------------IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  186 (301)
Q Consensus       137 ~l~~~~~~~g~~~~A------------------------------~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~  186 (301)
                      .+|.++...|++++|                              ...+.+++..+|.++..+..+|.++...|++.+|+
T Consensus       183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            888888887765433                              33334444445555555556778888889999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205          187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS  249 (301)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~  249 (301)
                      ..+.+++..+|.+..++..+|.++...|+   +++|+.+|+++++++|. ....|..++.++.
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~  321 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPM-RAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence            99999999999999999999999999999   99999999999999995 7777777765544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-18  Score=122.43  Aligned_cols=110  Identities=16%  Similarity=0.068  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      +...|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.+++.++|+++.+|+++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCS  248 (301)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~  248 (301)
                      +   +++|+..|+++++++|+ +..++.+++.+.
T Consensus        86 ~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~l~  115 (117)
T d1elwa_          86 R---FEEAKRTYEEGLKHEAN-NPQLKEGLQNME  115 (117)
T ss_dssp             C---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence            9   99999999999999996 888888887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-17  Score=127.92  Aligned_cols=127  Identities=14%  Similarity=0.050  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      ..|..+...|+|+.|++.|.++   .|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            4466666666666666666543   3445566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          183 KQAAFCYEELILSQPTV----------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       183 ~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++|+..|++++...|.+                ..+++++|.++..+|+   +++|...|.+++.+.|.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence            66666666666544332                3456677777777777   77777777777777764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.4e-18  Score=126.28  Aligned_cols=111  Identities=15%  Similarity=0.086  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +...|..++..|+|++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            44567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      ++++|+.+|++++.++|+++.++..++.+..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            8888888888888888888887777766643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.2e-18  Score=129.31  Aligned_cols=153  Identities=16%  Similarity=0.060  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ...| +.|..++..|+++.|+..|.++   .|.++.+++.+|.++..+|++++|+..|+++++.+|+++.+|.++|.++.
T Consensus         6 ~~l~-~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           6 ISLW-NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHH-HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3344 5699999999999999999864   46678899999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          144 AQGNFPTAIEWLNKYLETFMAD----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      .+|++++|+..|++++...|.+                ..+++++|.++...|++++|+..+.+++.+.|..        
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~--------  153 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP--------  153 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG--------
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--------
Confidence            9999999999999999875543                4778999999999999999999999999998864        


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          208 DVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                          ..+.   .+.|+..+.+.....|.
T Consensus       154 ----~~~~---~~~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         154 ----RHSK---IDKAMECVWKQKLYEPV  174 (192)
T ss_dssp             ----GGGH---HHHHHHHHHTTCCCCCC
T ss_pred             ----chHH---HHHHHHHHHhhhhCCcc
Confidence                2333   66777777776666663

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.4e-19  Score=148.85  Aligned_cols=210  Identities=14%  Similarity=0.086  Sum_probs=173.7

Q ss_pred             cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHh----------CCChHHHHHHHHHHHHhCCCchhhHHHHH
Q 022205           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD----------CQCLDVAKDCIKVLQKQFPESKRVGRLEG  105 (301)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----------~~~~~~A~~~~~~~~~~~p~~~~~~~~~a  105 (301)
                      ...+++++.....++..       +|+.+++|...+..+..          .|++++|+.++++++..+|+++.++..+|
T Consensus        42 ~~~~~~al~~~~~~l~~-------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~  114 (334)
T d1dcea1          42 GELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC  114 (334)
T ss_dssp             TCCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhh
Confidence            34457788888887765       77777777655544333          34578999999999999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          106 ILLEAKG--LWAEAEKAYSSLLEDNPLDPVLH-KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       106 ~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      .++...+  ++++|+..+++++..+|.+..++ ...|.++...|.+++|+..++++++.+|.+..+|+.+|.++...|++
T Consensus       115 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            9988876  48999999999999999999986 46788999999999999999999999999999999999999998775


Q ss_pred             H------------------------------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205          183 K------------------------------QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (301)
Q Consensus       183 ~------------------------------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~  232 (301)
                      +                              +|...|.+++..+|.++..+..+|.++...|+   +.+|+..+.+++..
T Consensus       195 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~  271 (334)
T d1dcea1         195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS---ELESCKELQELEPE  271 (334)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH---HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh---HHHHHHHHHHHHhh
Confidence            4                              44445556666666666666678888888888   99999999999999


Q ss_pred             cCCCchhHhhhHHHHHHHHHhhhc
Q 022205          233 TGGKNTKALFGICLCSSAIAQLTK  256 (301)
Q Consensus       233 ~p~~~~~~~~~l~~~~~~l~~~~~  256 (301)
                      +|. +..+++.++.++..+++..+
T Consensus       272 ~p~-~~~~~~~l~~~~~~~~~~~e  294 (334)
T d1dcea1         272 NKW-CLLTIILLMRALDPLLYEKE  294 (334)
T ss_dssp             CHH-HHHHHHHHHHHHCTGGGHHH
T ss_pred             Cch-HHHHHHHHHHHHHHCCCHHH
Confidence            995 89999999999888877443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-17  Score=120.98  Aligned_cols=127  Identities=13%  Similarity=-0.032  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+...|..++..|+|++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcccHHHHHHHH
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV--SLQMYKQAAFCY  189 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~  189 (301)
                      ..+|++++|+..+++++.++|+++.++..++.+..  ..+.+++|+...
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999988887753  445566666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.1e-17  Score=129.71  Aligned_cols=115  Identities=16%  Similarity=0.044  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  178 (301)
                      ..+...|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.+|..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      +|++++|+.+|++++.++|++...+...+..+...
T Consensus        85 l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~  119 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI  119 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            77777777777777777665443333333333333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-17  Score=129.31  Aligned_cols=102  Identities=11%  Similarity=-0.025  Sum_probs=98.7

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      +...+...|..++..|++++|+..|++++..+|+++.+|.++|.+|...|++++|+.+|++++.++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          211 YTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ..+|+   +++|+..|++++.++|+
T Consensus        83 ~~l~~---~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMES---YDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHCCC---HHHHHHHHHHHHHhCcc
Confidence            99999   99999999999999985

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.9e-15  Score=123.92  Aligned_cols=171  Identities=13%  Similarity=0.019  Sum_probs=145.0

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  131 (301)
                      +....|.+.|.++...|++++|+.+|.++....+      +...++..+|.+|..+|++++|+..|++++...+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            3466788999999999999999999999998642      334678899999999999999999999999865444    


Q ss_pred             --HHHHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH--
Q 022205          132 --PVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP--  200 (301)
Q Consensus       132 --~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--  200 (301)
                        ..++..+|.++.. .|++++|+..|++++++.+..      ..++..+|.++...|+|++|+.+|++++...|.++  
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence              4578888988865 699999999999999875432      45688999999999999999999999999887664  


Q ss_pred             -----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          201 -----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       201 -----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                           ..+...|.++...|+   +..|...++++++++|.
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d---~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred             hhhHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence                 356788899999999   99999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.7e-16  Score=116.33  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  143 (301)
                      ...+...|..++..|++++|+..|.+++...|..........          .....+         ...++.++|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQAL---------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH----------hhhchh---------HHHHHHHHHHHHH
Confidence            444556677777777777777777777776664332211100          000000         1235667788888


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+...++.+....+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888778777766655

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.68  E-value=4.2e-16  Score=108.95  Aligned_cols=93  Identities=16%  Similarity=-0.006  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      .+..|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELI  193 (301)
Q Consensus       181 ~~~~A~~~~~~al  193 (301)
                      ++++|++++++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            6666666665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=4.2e-16  Score=108.97  Aligned_cols=94  Identities=13%  Similarity=-0.030  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      .++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHh
Q 022205          214 GGVDNILLAKKYYASTI  230 (301)
Q Consensus       214 ~~~~~~~~A~~~~~~al  230 (301)
                      |+   +++|++++++.|
T Consensus        98 g~---~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HN---ANAALASLRAWL  111 (112)
T ss_dssp             HH---HHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHh
Confidence            99   999999999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-15  Score=113.38  Aligned_cols=132  Identities=12%  Similarity=0.126  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  178 (301)
                      ..+...|..++..|+|++|+..|++++...|........             -.....      +....++.++|.+|..
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~-------------~~~~~~------~~~~~~~~nla~~y~k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-------------EAQKAQ------ALRLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-------------HHHHHH------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH-------------HHhhhc------hhHHHHHHHHHHHHHh
Confidence            344456667777777777777777777665543221100             000000      0113467889999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      .|++++|+.++++++.++|+++.+++.+|.+++.+|+   +++|+..|+++++++|+ +..+...++.+...+..
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999   99999999999999996 99998888888777765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.6e-14  Score=118.03  Aligned_cols=154  Identities=15%  Similarity=0.086  Sum_probs=131.9

Q ss_pred             ChHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHH
Q 022205           79 CLDVAKDCIKVLQKQ-FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        79 ~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      ..++|..++++++.. .|.+...|...+.+....|+++.|...|++++...|.+.. +|..++......|+++.|..+|.
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            457888899998875 5778888888899999999999999999999998887654 78888888888999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          157 KYLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      +++...|.+...|...|..... .|+.+.|..+|++++...|+++..|..++..+...|+   ++.|+..|+++++..|.
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC
Confidence            9999999888888888876544 5788999999999999999999999999999999998   99999999999887663

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=4.7e-15  Score=109.59  Aligned_cols=133  Identities=15%  Similarity=-0.016  Sum_probs=98.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  178 (301)
                      ..+...|..++..|+|.+|+..|++++...|.....             .+.........+     ...++.++|.+|+.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence            345567888888888888888888888755433210             011111111111     12467789999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +|++++|+.++++++.++|.+..+|+++|.++..+|+   +++|+.+|+++++++|+ +..+...+..+..++.+
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999   99999999999999995 88888888877777664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.64  E-value=6.9e-15  Score=110.49  Aligned_cols=134  Identities=10%  Similarity=-0.029  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+...|..++..|+|.+|+..|.+++...|.........          ....         .+....++.++|.+|
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~----------~~~~---------~~~~~~~~~Nla~~~   74 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE----------SKAS---------ESFLLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH----------HHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh----------hhhc---------chhHHHHHHhHHHHH
Confidence            345566667777777777777777777776554322111000          0000         011133566788888


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      ..+|++++|+..+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.+....+.
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888888888888888888888888888888888777766655

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=1.9e-15  Score=113.78  Aligned_cols=129  Identities=11%  Similarity=-0.046  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~  182 (301)
                      ..|..++..|+|.+|+..|++++...+.                  ..+..........+|....++.++|.++...|++
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~   93 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW   93 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhccc
Confidence            3455666666666666666666542211                  0111112223334455566666666666666666


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      ++|+..|.++++++|+++.+|+++|.++..+|+   +++|+..|+++++++|+ +..+...+..|...+..
T Consensus        94 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~---~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1          94 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666   66666666666666664 66666666666655554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-15  Score=108.36  Aligned_cols=110  Identities=15%  Similarity=-0.017  Sum_probs=62.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q 022205          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYT  212 (301)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  212 (301)
                      ++..+...+++++|++.|++++..+|.++.+++++|.++..   .+++++|+..|++++..+|.+  ..+++++|.+|+.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            44445555556666666666666666666666666666554   234445666666666555443  2355666666666


Q ss_pred             cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      +|+   +++|+.+|+++++++|+ +..+...+..+...+
T Consensus        85 ~g~---~~~A~~~~~~aL~~~P~-~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          85 LKE---YEKALKYVRGLLQTEPQ-NNQAKELERLIDKAM  119 (122)
T ss_dssp             TTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             Hhh---hHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHH
Confidence            666   66666666666666664 555555554444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=7.3e-15  Score=108.52  Aligned_cols=134  Identities=10%  Similarity=-0.032  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (301)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  142 (301)
                      ....+...|..++..|+|.+|+..|.+++...|.........             .......+     ...++.++|.+|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~Nla~~~   77 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-------------LLDKKKNI-----EISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-------------HHHHHHHH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH-------------HHHhhhhH-----HHHHHhhHHHHH
Confidence            344566789999999999999999999999776433211100             00011111     123677899999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (301)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  214 (301)
                      ..+|++++|+..++++++.+|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+..+++
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999888887766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=7e-16  Score=112.95  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (301)
Q Consensus       108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  177 (301)
                      +.+.+.|++|+..|++++..+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34455567777777777777777777777777666643          33456777777777777777777777777776


Q ss_pred             Hccc-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205          178 SLQM-----------YKQAAFCYEELILSQPTVPLYHLAYADVL  210 (301)
Q Consensus       178 ~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (301)
                      ..|+           |++|+.+|++++.++|++..++..++.+.
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            6543           56666666666666666666666666544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-14  Score=127.12  Aligned_cols=170  Identities=13%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHhCC--Cchh-hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205           80 LDVAKDCIKVLQKQFP--ESKR-VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (301)
Q Consensus        80 ~~~A~~~~~~~~~~~p--~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (301)
                      +..++..++...+...  +... .....+.+....+.|+.|+..+.+++..+|.+...+..+|..+...|++++|+..+.
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            5567777777775432  2222 223456677778889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC
Q 022205          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  236 (301)
Q Consensus       157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~  236 (301)
                      +++..+|  ..++.++|.++...|++++|+.+|++|+.++|+++.++.++|.++...|+   +.+|+.+|.+++..+|+ 
T Consensus       145 ~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~---~~~A~~~y~ral~~~~~-  218 (497)
T d1ya0a1         145 SSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKFP-  218 (497)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSBC-
T ss_pred             HHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-
Confidence            9998876  46888999999999999999999999999999999999999999999999   99999999999999995 


Q ss_pred             chhHhhhHHHHHHHHHhhh
Q 022205          237 NTKALFGICLCSSAIAQLT  255 (301)
Q Consensus       237 ~~~~~~~l~~~~~~l~~~~  255 (301)
                      ...++.+|+..+....+..
T Consensus       219 ~~~a~~nL~~~~~~~~~~~  237 (497)
T d1ya0a1         219 FPAASTNLQKALSKALESR  237 (497)
T ss_dssp             CHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHhhhhh
Confidence            9999999998888776533

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.5e-13  Score=113.28  Aligned_cols=228  Identities=10%  Similarity=-0.055  Sum_probs=186.0

Q ss_pred             chhHHHHHhHHHhhhhc----C--C-------ccHHHHHHHHHHhccCChHHHHHHHHH---------------------
Q 022205            3 TKTEETQLNRLENQVDN----G--G-------GGAWEYLCLVKKLKVRRPDKVLRHGLS---------------------   48 (301)
Q Consensus         3 ~~~~~~~l~~~~~~~~~----~--~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~---------------------   48 (301)
                      |+.+..+++-+.+-+.-    .  .       ..+...+.+.....+..++..+.++.-                     
T Consensus         1 ~~~e~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~   80 (308)
T d2onda1           1 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS   80 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccch
Confidence            56777788877776541    0  0       114445566666677777766665542                     


Q ss_pred             -----HhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHH
Q 022205           49 -----ILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYS  122 (301)
Q Consensus        49 -----~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~  122 (301)
                           ++..  ......|....+|...+......|+++.|..++++++...|.+. .+|...+......|+++.|...|.
T Consensus        81 ~~a~~i~~r--al~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          81 DEAANIYER--AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHH--HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                 2221  11123566677888888889999999999999999999998764 478899999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 022205          123 SLLEDNPLDPVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-  200 (301)
Q Consensus       123 ~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-  200 (301)
                      +++...|.+...+...+..... .|+.+.|..+|++++..+|+++..|..++..+...|+++.|..+|++++...|.++ 
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            9999999999999998887654 68999999999999999999999999999999999999999999999999877554 


Q ss_pred             ---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          201 ---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       201 ---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                         ..|..+.......|+   .+.+...++++.+..|.
T Consensus       239 ~~~~iw~~~~~fE~~~G~---~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         239 KSGEIWARFLAFESNIGD---LASILKVEKRRFTAFRE  273 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcc
Confidence               478888888888899   99999999999999996

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-15  Score=106.45  Aligned_cols=110  Identities=14%  Similarity=-0.045  Sum_probs=89.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCC--HHHHHHHHHHHH
Q 022205          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMAD--HDAWRELAEIYV  177 (301)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~  177 (301)
                      .++..+...+++++|.+.|++++..+|+++.+++++|.++...+   ++++|+..|++++..+|.+  +.+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            34566677788889999999999999999999999998887644   4557899999988887654  457888999999


Q ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (301)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (301)
                      ..|++++|+.+|+++++++|++..+...++.+...
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999998888777766544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.8e-15  Score=105.66  Aligned_cols=99  Identities=14%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH-------HHHHH
Q 022205          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-------YHLAY  206 (301)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l  206 (301)
                      .+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|+..|++++.++|.++.       ++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34456666666666666666666666666666666666666666666666666666666666655432       44556


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      |.++..+++   +++|+.+|++++..+|+
T Consensus        86 g~~~~~~~~---~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          86 GNSYFKEEK---YKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhCC---HHHHHHHHHHHHhcCCC
Confidence            666677777   77777777777776653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.62  E-value=1.8e-14  Score=108.18  Aligned_cols=132  Identities=14%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (301)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  178 (301)
                      ..+...|..++..|+|.+|+..|++++...|.....              ....     .....+....++.++|.||..
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--------------SEKE-----SKASESFLLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--------------chhh-----hhhcchhHHHHHHhHHHHHHH
Confidence            344556666666666666666666666543321110              0000     000011124567889999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +|++++|+.++++++.++|+++.+++++|.++..+|+   +++|+..|.+++.++|+ +..++..++.+...+.+
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~---~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999   99999999999999996 88888888888777664

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=7.4e-15  Score=110.42  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=33.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG  257 (301)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~  257 (301)
                      ++|....++.++|.++..+|+   +++|+..|.++++++|+ +..+|+.+|.++..+++...+
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~---~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A  130 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSD---WQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQA  130 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             hChhhHHHHHHHHHHHHhhcc---cchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHH
Confidence            344445555556666666666   66666666666666663 556666666666655554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.6e-14  Score=102.22  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHH
Q 022205          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWREL  172 (301)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l  172 (301)
                      .+..+|..++..|+|++|+.+|++++..+|+++.++.++|.+|..+|++++|+..++++++++|+++       .++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3456788888888888888888888888888888888888888888888888888888888887664       355667


Q ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (301)
Q Consensus       173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  206 (301)
                      |.++...+++++|+.+|++++..+|+ +.....+
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            77788888899999999998888764 4443333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=5.2e-15  Score=108.21  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=95.5

Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (301)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (301)
                      +.+.+.+++|+..|+++++.+|+++.+++++|.++...          +.+++|+..|+++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45667799999999999999999999999999999854          55689999999999999999999999999998


Q ss_pred             HcCCC--------CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205          212 TLGGV--------DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI  251 (301)
Q Consensus       212 ~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l  251 (301)
                      .+|+.        +.+++|..+|+++++++|+ +..++.+|+.+....
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHHHHHH
Confidence            87641        2379999999999999996 888888888776544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=8.4e-14  Score=113.87  Aligned_cols=199  Identities=13%  Similarity=0.040  Sum_probs=148.2

Q ss_pred             ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHH
Q 022205           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILL  108 (301)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~  108 (301)
                      ..++.+.++......+.-. ......+.....|.++|.++...|++++|+.++++++...+..      ..++..+|.++
T Consensus        49 ~~~~~~~A~~~y~kA~~~~-~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL  127 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence            3455666665554443210 0011123567789999999999999999999999999876533      45677788888


Q ss_pred             HH-cCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHH
Q 022205          109 EA-KGLWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAE  174 (301)
Q Consensus       109 ~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~  174 (301)
                      .. .|++++|+..|++++...+.      ...++..+|.++...|++++|+..|++++...|.++       ..+...|.
T Consensus       128 ~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (290)
T d1qqea_         128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL  207 (290)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHH
Confidence            65 59999999999999875322      244688999999999999999999999999987763       45678899


Q ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          175 IYVSLQMYKQAAFCYEELILSQPTVPL-----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ++...|+++.|...++++++++|..+.     ....+..++ ..++.+.+++|+..|.++.+++|.
T Consensus       208 ~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~-~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCHH
Confidence            999999999999999999999986544     334444443 345555599999999999988873

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.4e-11  Score=102.03  Aligned_cols=217  Identities=10%  Similarity=-0.077  Sum_probs=139.3

Q ss_pred             HHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------chhhHHHH
Q 022205           31 VKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLE  104 (301)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~  104 (301)
                      ......++.+.++......+..  .+....+....++..+|.++...|++++|+..+++++...|.      ....+..+
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            3334566777788777777654  111112234557778899999999999999999988876542      23456677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHH---
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNP--------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDA---  168 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~---  168 (301)
                      +.++...|++..|...+.+++...+        ....++..+|.++...|+++.+...+.+++...+..     ..+   
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            8888888999999988888876321        123356678888888888888888888877654432     222   


Q ss_pred             --------------------------------------HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 022205          169 --------------------------------------WRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAY  206 (301)
Q Consensus       169 --------------------------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l  206 (301)
                                                            +..+|.++...|+++.|...+++++...|.+    ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence                                                  3344555555566666666666666555433    2344556


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhcc------cCCCchhHhhhHHHHHHHHHh
Q 022205          207 ADVLYTLGGVDNILLAKKYYASTIDL------TGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       207 a~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      |.++...|+   +++|...+++++..      .| ....++..++.++...|+
T Consensus       258 a~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~  306 (366)
T d1hz4a_         258 ARAQILLGE---FEPAEIVLEELNENARSLRLMS-DLNRNLLLLNQLYWQAGR  306 (366)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCC---HHHHHHHHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHCCC
Confidence            666666666   66666666666532      23 245556666666666655

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=9.1e-12  Score=103.16  Aligned_cols=180  Identities=16%  Similarity=0.100  Sum_probs=147.9

Q ss_pred             chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 022205           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-----SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-----  130 (301)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----  130 (301)
                      +.....+..+|..+...|+++.+...+..+....+.     ...++...+..+...+++..+...+.++....+.     
T Consensus       130 ~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  209 (366)
T d1hz4a_         130 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS  209 (366)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence            345567778899999999999999999999987763     2345667788899999999999999988774322     


Q ss_pred             --CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh------CCC
Q 022205          131 --DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILS------QPT  198 (301)
Q Consensus       131 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~  198 (301)
                        ...++..++.++...|++++|...+++++...|.+    ...+..+|.++...|++++|+..+++++..      .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence              23467788999999999999999999999887655    456788999999999999999999999854      345


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhh
Q 022205          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFG  243 (301)
Q Consensus       199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~  243 (301)
                      ...++..+|.++...|+   +++|+..|++++++.+. ..++.+..
T Consensus       290 ~~~~~~~la~~~~~~g~---~~~A~~~l~~Al~l~~~~~~~~~~~~  332 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGR---KSDAQRVLLDALKLANRTGFISHFVI  332 (366)
T ss_dssp             HHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence            56789999999999999   99999999999998664 34444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-13  Score=118.85  Aligned_cols=142  Identities=11%  Similarity=-0.039  Sum_probs=98.5

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (301)
                      ......+.|+.++..+..+....|++...+..+|..+...|++++|+..+.+++..+|  ..++..+|.++...|++++|
T Consensus        94 ~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A  171 (497)
T d1ya0a1          94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQA  171 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHH
Confidence            3344457788888888888888899999999999999999999999999999988776  35788999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (301)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  215 (301)
                      +.+|+++++++|+++.+++.||.++...|++.+|+.+|.+++...|..+.++.+++.++....+
T Consensus       172 ~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999988776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-12  Score=86.52  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ++.+|.++...|++++|+..|+++++..|.+       +.++.++|.++...|++++|+.+|+++++++|+++.++.+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            3444444444444444444444444443322       334444444444444444444444444444444444444444


Q ss_pred             H
Q 022205          208 D  208 (301)
Q Consensus       208 ~  208 (301)
                      .
T Consensus        88 ~   88 (95)
T d1tjca_          88 Y   88 (95)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-12  Score=86.96  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc
Q 022205          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  237 (301)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (301)
                      +++.++.+|.+++..|+|++|+..|++|+++.|.+       ..++.++|.+++..|+   +++|+.+|+++++++|+ +
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~---~~~A~~~y~~aL~l~P~-~   79 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPE-H   79 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-C
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC---hHHHHHHHHHHHHhCcC-C
Confidence            46678899999999999999999999999886543       6789999999999999   99999999999999996 9


Q ss_pred             hhHhhhHHHHHHHHH
Q 022205          238 TKALFGICLCSSAIA  252 (301)
Q Consensus       238 ~~~~~~l~~~~~~l~  252 (301)
                      ..++.+++.+...++
T Consensus        80 ~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          80 QRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999988776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=9.5e-13  Score=97.27  Aligned_cols=94  Identities=14%  Similarity=0.041  Sum_probs=73.0

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--------
Q 022205          139 VAIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--------  198 (301)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------  198 (301)
                      |..++..|+|++|+..|+++++++|+.            ..+|.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555666666666666666666666543            356788899999999999999999998876431        


Q ss_pred             ---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          199 ---VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       199 ---~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                         ...+++++|.+|..+|+   +++|+..|++++++.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~---~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHhhHH
Confidence               13468899999999999   99999999999999774

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.31  E-value=3.5e-12  Score=94.14  Aligned_cols=94  Identities=15%  Similarity=0.003  Sum_probs=70.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------
Q 022205          105 GILLEAKGLWAEAEKAYSSLLEDNPLD------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------  164 (301)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------  164 (301)
                      |..++..|+|++|+..|++++...|+.            ..++.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555566666666666666666655443            346778888888888888888888888876542        


Q ss_pred             ---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205          165 ---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (301)
Q Consensus       165 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  198 (301)
                         ...+++++|.+|...|++++|+.+|++++++.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               1346788999999999999999999999987553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.31  E-value=1.3e-09  Score=87.02  Aligned_cols=178  Identities=13%  Similarity=0.043  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +..+..+|..++..+++++|+.+|+++.+  .+++.+++.+|.++..    ..++..|..+++.+...+  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            56788899999999999999999999987  4678889999999987    678999999999887644  566677777


Q ss_pred             HHHHH----cCChhHHHHHHHHHHHhc----------------------------------CCCHHHHHHHHHHHHH---
Q 022205          140 AIAKA----QGNFPTAIEWLNKYLETF----------------------------------MADHDAWRELAEIYVS---  178 (301)
Q Consensus       140 ~~~~~----~g~~~~A~~~~~~~l~~~----------------------------------p~~~~~~~~lg~~~~~---  178 (301)
                      .++..    .++.+.|...++.+....                                  +.++..+..||.++..   
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            77665    345667777777655432                                  3446677788888876   


Q ss_pred             -cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205          179 -LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA  250 (301)
Q Consensus       179 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~  250 (301)
                       ..+...+..+++.+.+  +.++.+++.+|.++.. .|...++++|+.+|+++.+..   +..+++.|+.++..
T Consensus       158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~  226 (265)
T d1ouva_         158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN  226 (265)
T ss_dssp             SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             cccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence             3566778888887765  5688999999999887 222234999999999998873   67899999988864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.26  E-value=6.3e-12  Score=100.60  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=108.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A  185 (301)
                      .-.+..|++++|+..++++++.+|++..++..+|.++...|++++|+..|+.+++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567799999999999999999999999999999999999999999999999999999999999999998888777776


Q ss_pred             HHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205          186 AFCYEELIL-SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (301)
Q Consensus       186 ~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~  235 (301)
                      ...+..... ..|.....+...+.++...|+   +++|...+.++.+..|.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE  131 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC
Confidence            655444332 345556677778899999999   99999999999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.19  E-value=1.1e-11  Score=99.19  Aligned_cols=132  Identities=11%  Similarity=-0.090  Sum_probs=112.3

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205           72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (301)
Q Consensus        72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (301)
                      ...+..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+.+++.+|++..++..++.++...+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999988777666655


Q ss_pred             HHHHHHHH-HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205          152 IEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (301)
Q Consensus       152 ~~~~~~~l-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  203 (301)
                      ...+.... ...|.....+...+.++...|++++|...++++.+..|..+..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            44433322 22455566777889999999999999999999999999876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=3e-10  Score=85.27  Aligned_cols=114  Identities=15%  Similarity=0.016  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (301)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~  180 (301)
                      +...|......|++++|+..|.+++...+........       .+.+     .......+.+....++..++.++...|
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3444555555555555555555555554443221100       0111     112222333444566777777777777


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                      ++++|+.++++++..+|.+..+|..++.++...|+   +.+|+..|+++
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr---~~eAl~~y~~~  127 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRV  127 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence            77777777777777777777777777777777777   77777777776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=3.5e-10  Score=84.93  Aligned_cols=123  Identities=10%  Similarity=0.016  Sum_probs=99.4

Q ss_pred             CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (301)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  139 (301)
                      +-..+..+...|......|++++|+..|.+++..+++........+       .+     .........+....++..++
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~-------~w-----~~~~r~~l~~~~~~a~~~la   74 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF-------QF-----VEPFATALVEDKVLAHTAKA   74 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTS-------TT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcch-------HH-----HHHHHHHHHHHHHHHHHHHH
Confidence            4456777788899999999999999999999999887654332111       11     11122223344567889999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (301)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  194 (301)
                      .++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus        75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999843

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.04  E-value=9.5e-08  Score=75.85  Aligned_cols=149  Identities=12%  Similarity=0.005  Sum_probs=106.0

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChh
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFP  149 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~  149 (301)
                      .+.+.|...++.+....+  ..+...++..+..    ......|...+.....  +.+...+..+|.++..    ..+..
T Consensus        88 ~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~  163 (265)
T d1ouva_          88 QNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLK  163 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             hhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccc
Confidence            455666666666665332  3334444444443    2445555555555433  4456778888888886    34566


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Q 022205          150 TAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGVDNILLAKK  224 (301)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~~~~A~~  224 (301)
                      .+..+++.+.+  +.++.+++.+|.+|..    ..+++.|+.+|+++.+.  .++.+++.+|.+|.. .|-..++++|+.
T Consensus       164 ~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~  239 (265)
T d1ouva_         164 KALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIE  239 (265)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred             cchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence            77777777765  5689999999999987    67899999999999887  478999999999985 221234999999


Q ss_pred             HHHHHhcccC
Q 022205          225 YYASTIDLTG  234 (301)
Q Consensus       225 ~~~~al~~~p  234 (301)
                      +|++|....+
T Consensus       240 ~~~kAa~~g~  249 (265)
T d1ouva_         240 NFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHCcC
Confidence            9999998865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.7e-07  Score=64.11  Aligned_cols=82  Identities=11%  Similarity=0.008  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205          166 HDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (301)
Q Consensus       166 ~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (301)
                      +.+.+++|.++...   ++.++++.+++.++..+|.+. ..++.+|..|+++|+   +++|+.+++++++.+|+ +..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd---y~~A~~~~~~~L~ieP~-n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHccCCC-cHHHH
Confidence            56667777777654   345677777777777776554 577777777777777   77777777777777775 66665


Q ss_pred             hhHHHHHHHH
Q 022205          242 FGICLCSSAI  251 (301)
Q Consensus       242 ~~l~~~~~~l  251 (301)
                      .....+...+
T Consensus       111 ~L~~~Ie~~~  120 (124)
T d2pqrb1         111 ALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555544444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.62  E-value=6e-07  Score=63.34  Aligned_cols=114  Identities=21%  Similarity=0.099  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHH
Q 022205          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFC  188 (301)
Q Consensus       113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~  188 (301)
                      ++++|+.+|+++.+.+  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.||.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            5677777777777654  3444455543  3446778888888888764  578888888888876    4568888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcccC
Q 022205          189 YEELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTG  234 (301)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p  234 (301)
                      |+++.+.  .++.+.+.+|.+|..- |-..++.+|+.+|+++.++..
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888765  5678888888887762 212338889999998887743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=9.7e-07  Score=60.32  Aligned_cols=78  Identities=9%  Similarity=-0.110  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205          132 PVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (301)
Q Consensus       132 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  207 (301)
                      ..+.+.+|.++.+..   +.++++..|+.+++.+|.+. +.+++||.+|++.|+|+.|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            567777887777654   45688888888888887664 68888888888888888888888888888888877765544


Q ss_pred             HH
Q 022205          208 DV  209 (301)
Q Consensus       208 ~~  209 (301)
                      .+
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.49  E-value=3.1e-06  Score=59.48  Aligned_cols=112  Identities=12%  Similarity=-0.131  Sum_probs=92.3

Q ss_pred             CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 022205           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE  153 (301)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~  153 (301)
                      .|+++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            46889999999998753  5555666654  3457899999999999775  578899999999986    467899999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Q 022205          154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP  197 (301)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p  197 (301)
                      +|+++.+.  .++.+.+.||.+|..    ..++.+|+.+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999875  579999999999987    4689999999999988653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=0.23  Score=39.45  Aligned_cols=128  Identities=14%  Similarity=-0.000  Sum_probs=62.5

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (301)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  148 (301)
                      ..|..|.+.|.++.|..+|...-.        +-.+..++.+.+++..|.+...+.     ++...|..+...+......
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence            345556666666666666643211        222334555666677666666554     3455666666665555444


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (301)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (301)
                      .-+.- ....   -..++.-...+...|...|.+++.+.+++.++...+.+...+..++.+|.+.
T Consensus        86 ~la~i-~~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          86 RLAQM-CGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHH-TTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHH-HHHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            32211 1100   1123344444555566666666666666666666666666666666655544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.17  E-value=1  Score=35.61  Aligned_cols=39  Identities=8%  Similarity=0.037  Sum_probs=19.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (301)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  144 (301)
                      ..+...|.+++.+.+++.++...+.+...+..++.+|.+
T Consensus       107 ~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         107 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            334444555555555555554444455555555554443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=1.2  Score=36.46  Aligned_cols=155  Identities=10%  Similarity=-0.029  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (301)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  146 (301)
                      ...++...+..+..+.+...+........+........+ .....+++..+...+...-......+...+.+|..+...|
T Consensus       255 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G  333 (450)
T d1qsaa1         255 RDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG  333 (450)
T ss_dssp             HHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcC
Confidence            334444445556677777777666655444333333333 3445578887777776654333344556778888888888


Q ss_pred             ChhHHHHHHHHHHHhcCCCH------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205          147 NFPTAIEWLNKYLETFMADH------------------------------DAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (301)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  196 (301)
                      +.++|...|..+... + +.                              ..-+..+..++..|....|...+..++.. 
T Consensus       334 ~~~~A~~~~~~~a~~-~-~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-  410 (450)
T d1qsaa1         334 REAEAKEILHQLMQQ-R-GFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-  410 (450)
T ss_dssp             CHHHHHHHHHHHHTS-C-SHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             ChhhHHHHHHHHhcC-C-ChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-
Confidence            888888888876532 1 10                              01113344555556666666655555432 


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (301)
Q Consensus       197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a  229 (301)
                       .++.-...+|.+....|.   ++.|+....++
T Consensus       411 -~~~~~~~~la~lA~~~g~---~~~aI~a~~~~  439 (450)
T d1qsaa1         411 -KSKTEQAQLARYAFNNQW---WDLSVQATIAG  439 (450)
T ss_dssp             -CCHHHHHHHHHHHHHTTC---HHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHCCC---hhHHHHHHHHH
Confidence             234444555666666666   66666555444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=3  Score=34.01  Aligned_cols=139  Identities=12%  Similarity=0.059  Sum_probs=90.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA----KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (301)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  179 (301)
                      .+.......+.+.|...+.......+.....+.......    ...+..+.+...+........+.......++ .....
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~  298 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGT  298 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHc
Confidence            333444457888898888887776666655443333332    2346677788877777655544333333344 45567


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ  253 (301)
Q Consensus       180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~  253 (301)
                      +++..+...+...-......+...+.+|..+...|+   .+.|...|..+.. .+     .+||+. +...+|.
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~---~~~A~~~~~~~a~-~~-----~fYG~L-Aa~~Lg~  362 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ-QR-----GFYPMV-AAQRIGE  362 (450)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT-SC-----SHHHHH-HHHHTTC
T ss_pred             CChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC---hhhHHHHHHHHhc-CC-----ChHHHH-HHHHcCC
Confidence            899999888876533223446788999999999999   9999999998865 23     256653 4555664

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.80  E-value=1.6  Score=26.12  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH
Q 022205          169 WRELAEIYVSLQMYKQAAFCYEELI  193 (301)
Q Consensus       169 ~~~lg~~~~~~~~~~~A~~~~~~al  193 (301)
                      +...+.-+...|.|++||+|.+++.
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455666677777777777766554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.01  E-value=2  Score=25.68  Aligned_cols=31  Identities=6%  Similarity=0.024  Sum_probs=21.9

Q ss_pred             hhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK   92 (301)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   92 (301)
                      +....+...|..++..|.|++|+.+.+++..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455667777788888888888877665544